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2020 – today
- 2022
[j4]Mehmet Burak Koca, Esmaeil Nourani, Ferda Abbasoglu, Ilknur Karadeniz, Fatih Erdogan Sevilgen:
Graph convolutional network based virus-human protein-protein interaction prediction for novel viruses. Comput. Biol. Chem. 101: 107755 (2022)- 2021
- [c3]Mehmet Burak Koca, Ilknur Karadeniz, Esmaeil Nourani, Fatih Erdogan Sevilgen:
Protein Interaction Prediction on PHI Networks Using Graph Convolution Networks. SIU 2021: 1-4
2010 – 2019
- 2019
- [b1]Ilknur Karadeniz:
Ontology-based entity tagging and normalization in the biomedical domain (Biyomedikal alanda ontoloji tabanlı varlık ismi etiketleme ve normalizasyonu). Boğaziçi University, Turkey, 2019 - [j3]Ilknur Karadeniz
, Arzucan Özgür:
Linking entities through an ontology using word embeddings and syntactic re-ranking. BMC Bioinform. 20(1): 156:1-156:12 (2019) - [c2]Ilknur Karadeniz, Ömer Faruk Tuna, Arzucan Özgür:
BOUN-ISIK Participation: An Unsupervised Approach for the Named Entity Normalization and Relation Extraction of Bacteria Biotopes. BioNLP-OST@EMNLP-IJNCLP 2019: 150-157 - 2015
- [j2]Ilknur Karadeniz, Arzucan Özgür:
Detection and categorization of bacteria habitats using shallow linguistic analysis. BMC Bioinform. 16(S10): S5 (2015) - 2013
- [j1]Saliha Durmus Tekir, Tunahan Çakir, Emre Ardiç, Ali Semih Sayilirbas, Gökhan Konuk, Mithat Konuk, Hasret Sariyer, Azat Ugurlu, Ilknur Karadeniz, Arzucan Özgür, Fatih Erdogan Sevilgen, Kutlu Ö. Ülgen:
PHISTO: pathogen-host interaction search tool. Bioinform. 29(10): 1357-1358 (2013) - [c1]Ilknur Karadeniz, Arzucan Özgür:
Bacteria Biotope Detection, Ontology-based Normalization, and Relation Extraction using Syntactic Rules. BioNLP@ACL (Shared Task) 2013: 170-177
Coauthor Index
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