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ORCID5th BioNLP@EMNLP-IJCNLP - Open Shared Tasks, 2019: Hong Kong, China
- Jin-Dong Kim, Claire Nédellec, Robert Bossy, Louise Deléger:
Proceedings of The 5th Workshop on BioNLP Open Shared Tasks, BioNLP-OST@EMNLP-IJNCLP 2019, Hong Kong, China, November 4, 2019. Association for Computational Linguistics 2019, ISBN 978-1-950737-82-6 - Aitor Gonzalez-Agirre, Montserrat Marimon, Ander Intxaurrondo, Obdulia Rabal, Marta Villegas, Martin Krallinger:
PharmaCoNER: Pharmacological Substances, Compounds and proteins Named Entity Recognition track. 1-10 - Manuel Stoeckel, Wahed Hemati, Alexander Mehler:
When Specialization Helps: Using Pooled Contextualized Embeddings to Detect Chemical and Biomedical Entities in Spanish. 11-15 - Víctor Suárez-Paniagua:
VSP at PharmaCoNER 2019: Recognition of Pharmacological Substances, Compounds and Proteins with Recurrent Neural Networks in Spanish Clinical Cases. 16-20 - Xabier Lahuerta, Iakes Goenaga, Koldo Gojenola, Aitziber Atutxa, Maite Oronoz:
IxaMed at PharmacoNER Challenge 2019. 21-25 - Lukas Lange, Heike Adel, Jannik Strötgen:
NLNDE: Enhancing Neural Sequence Taggers with Attention and Noisy Channel for Robust Pharmacological Entity Detection. 26-32 - Ying Xiong, Yedan Shen, Yuanhang Huang, Shuai Chen, Buzhou Tang, Xiaolong Wang, Qingcai Chen, Jun Yan, Yi Zhou:
A Deep Learning-Based System for PharmaCoNER. 33-37 - Renzo M. Rivera Zavala, Paloma Martínez:
Deep neural model with enhanced embeddings for pharmaceutical and chemical entities recognition in Spanish clinical text. 38-46 - Mohammad Golam Sohrab, Pham Minh Thang, Makoto Miwa, Hiroya Takamura:
A Neural Pipeline Approach for the PharmaCoNER Shared Task using Contextual Exhaustive Models. 47-55 - Kai Hakala, Sampo Pyysalo:
Biomedical Named Entity Recognition with Multilingual BERT. 56-61 - Yuxing Wang, Kaiyin Zhou, Mina Gachloo, Jingbo Xia:
An Overview of the Active Gene Annotation Corpus and the BioNLP OST 2019 AGAC Track Tasks. 62-71 - Dongfang Li, Ying Xiong, Baotian Hu, Hanyang Du, Buzhou Tang, Qingcai Chen:
Trigger Word Detection and Thematic Role Identification via BERT and Multitask Learning. 72-76 - Feifan Liu, Xiaoyu Zheng, Bo Wang, Catarina I. Kiefe:
DeepGeneMD: A Joint Deep Learning Model for Extracting Gene Mutation-Disease Knowledge from PubMed Literature. 77-83 - Ashok Thillaisundaram, Theodosia Togia:
Biomedical relation extraction with pre-trained language representations and minimal task-specific architecture. 84-89 - Radu Ion, Vasile Florian Pais
, Maria Mitrofan:
RACAI's System at PharmaCoNER 2019. 90-99 - Cong Sun, Zhihao Yang:
Transfer Learning in Biomedical Named Entity Recognition: An Evaluation of BERT in the PharmaCoNER task. 100-104 - Qi Zhang, Chao Liu, Ying Chi, Xuansong Xie, Xian-Sheng Hua:
A Multi-Task Learning Framework for Extracting Bacteria Biotope Information. 105-109 - Junyi Li, Xiaobing Zhou, Yuhang Wu, Bin Wang:
YNU-junyi in BioNLP-OST 2019: Using CNN-LSTM Model with Embeddings for SeeDev Binary Event Extraction. 110-114 - Pilar López-Úbeda, Manuel Carlos Díaz-Galiano, Luis Alfonso Ureña López, Maite Martín-Valdivia:
Using Snomed to recognize and index chemical and drug mentions. 115-120 - Robert Bossy, Louise Deléger, Estelle Chaix, Mouhamadou Ba, Claire Nédellec:
Bacteria Biotope at BioNLP Open Shared Tasks 2019. 121-131 - Pankaj Gupta, Usama Yaseen, Hinrich Schütze:
Linguistically Informed Relation Extraction and Neural Architectures for Nested Named Entity Recognition in BioNLP-OST 2019. 132-142 - Pan Deng, Haipeng Chen, Mengyao Huang, Xiaowen Ruan, Liang Xu:
An ensemble CNN method for biomedical entity normalization. 143-149 - Ilknur Karadeniz, Ömer Faruk Tuna, Arzucan Özgür:
BOUN-ISIK Participation: An Unsupervised Approach for the Named Entity Normalization and Relation Extraction of Bacteria Biotopes. 150-157 - Wuti Xiong, Fei Li, Ming Cheng, Hong Yu, Donghong Ji:
Bacteria Biotope Relation Extraction via Lexical Chains and Dependency Graphs. 158-167 - Jihang Mao, Wanli Liu:
Integration of Deep Learning and Traditional Machine Learning for Knowledge Extraction from Biomedical Literature. 168-173 - William A. Baumgartner Jr., Michael Bada, Sampo Pyysalo, Manuel R. Ciosici, Negacy D. Hailu, Harrison Pielke-Lombardo, Michael Regan, Lawrence Hunter:
CRAFT Shared Tasks 2019 Overview - Integrated Structure, Semantics, and Coreference. 174-184 - Lenz Furrer, Joseph Cornelius, Fabio Rinaldi:
UZH@CRAFT-ST: a Sequence-labeling Approach to Concept Recognition. 185-195 - Hai-Long Trieu, Anh-Khoa Duong Nguyen, Nhung T. H. Nguyen, Makoto Miwa, Hiroya Takamura, Sophia Ananiadou:
Coreference Resolution in Full Text Articles with BERT and Syntax-based Mention Filtering. 196-205 - Thang Minh Ngo, Jenna Kanerva, Filip Ginter, Sampo Pyysalo:
Neural Dependency Parsing of Biomedical Text: TurkuNLP entry in the CRAFT Structural Annotation Task. 206-215 - Mohammad Anani, Nazmul Kazi, Matthew Kuntz, Indika Kahanda:
RDoC Task at BioNLP-OST 2019. 216-226 - Pankaj Gupta, Yatin Chaudhary, Hinrich Schütze:
BioNLP-OST 2019 RDoC Tasks: Multi-grain Neural Relevance Ranking Using Topics and Attention Based Query-Document-Sentence Interactions. 227-236
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