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Journal Articles
- 2023
[j15]Sumeer Ahmad Khan, Alberto Maillo, Vincenzo Lagani
, Robert Lehmann, Narsis A. Kiani, David Gomez-Cabrero, Jesper Tegnér:
Reusability report: Learning the transcriptional grammar in single-cell RNA-sequencing data using transformers. Nat. Mac. Intell. 5(12): 1437-1446 (2023)- [j14]Xabier Martinez-de-morentin, Sumeer Ahmad Khan, Robert Lehmann, Sally Sisi Qu, Alberto Maillo, Narsis A. Kiani, Felipe Prósper, Jesper Tegnér, David Gomez-Cabrero:
LIBRA: an adaptative integrative tool for paired single-cell multi-omics data. Quant. Biol. 11(3): 246-259 (2023) - 2020
- [j13]Ewoud Ewing, Nuria Planell-Picola, Maja Jagodic, David Gomez-Cabrero:
GeneSetCluster: a tool for summarizing and integrating gene-set analysis results. BMC Bioinform. 21(1): 443 (2020) - 2019
- [j12]Camden Jansen, Ricardo N. Ramirez, Nicole C. El-Ali, David Gomez-Cabrero, Jesper Tegnér, Matthias Merkenschlager, Ana Conesa, Ali Mortazavi:
Building gene regulatory networks from scATAC-seq and scRNA-seq using Linked Self Organizing Maps. PLoS Comput. Biol. 15(11) (2019) - 2017
- [j11]Maria Needhamsen, Ewoud Ewing, Harald Lund, David Gomez-Cabrero, Robert Adam Harris, Lara Kular, Maja Jagodic:
Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies. BMC Bioinform. 18(1): 486 (2017) - 2016
- [j10]Lavanya Kannan, Marcel Ramos, Angela Re, Nehme Hachem, Zhaleh Safikhani, Deena M. A. Gendoo, Sean R. Davis, David Gomez-Cabrero, Robert Castelo, Kasper D. Hansen, Vincent J. Carey, Martin Morgan, Aedín C. Culhane, Benjamin Haibe-Kains, Levi Waldron:
Public data and open source tools for multi-assay genomic investigation of disease. Briefings Bioinform. 17(4): 603-615 (2016) - [j9]Ákos Tényi, Pedro de Atauri, David Gomez-Cabrero, Isaac Cano, Kim Clarke, Francesco Falciani, Marta Cascante, Josep Roca, Dieter Maier:
ChainRank, a chain prioritisation method for contextualisation of biological networks. BMC Bioinform. 17: 17 (2016) - [j8]David Gomez-Cabrero, Jörg Menche, Claudia Vargas, Isaac Cano, Dieter Maier, Albert-László Barabási, Jesper Tegnér, Josep Roca:
From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration. BMC Bioinform. 17(1): 23-35 (2016) - [j7]Vincenzo Lagani, Argyro D. Karozou, David Gomez-Cabrero, Gilad Silberberg, Ioannis Tsamardinos:
Erratum to: A comparative evaluation of data-merging and meta-analysis methods for reconstructing gene-gene interactions. BMC Bioinform. 17: 290 (2016) - [j6]Vincenzo Lagani, Argyro D. Karozou, David Gomez-Cabrero, Gilad Silberberg, Ioannis Tsamardinos:
A comparative evaluation of data-merging and meta-analysis methods for reconstructing gene-gene interactions. BMC Bioinform. 17(S-5): S194 (2016) - 2015
- [j5]Frida Danielsson, Tojo James, David Gomez-Cabrero, Mikael Huss:
Assessing the consistency of public human tissue RNA-seq data sets. Briefings Bioinform. 16(6): 941-949 (2015) - 2014
- [j4]David Gomez-Cabrero, Imad Abugessaisa, Dieter Maier, Andrew E. Teschendorff, Matthias Merkenschlager, Andreas Gisel, Esteban Ballestar, Erik Bongcam-Rudloff, Ana Conesa, Jesper Tegnér:
Data integration in the era of omics: current and future challenges. BMC Syst. Biol. 8(S-2): I1 (2014) - [j3]Rafael Hernández-de-Diego, Noemi Boix-Chova, David Gomez-Cabrero, Jesper Tegnér, Imad Abugessaisa, Ana Conesa:
STATegra EMS: an Experiment Management System for complex next-generation omics experiments. BMC Syst. Biol. 8(S-2): S9 (2014) - 2013
- [j2]Andrew E. Teschendorff, Francesco Marabita, Matthias Lechner, Thomas E. Bartlett, Jesper Tegnér, David Gomez-Cabrero, Stephan Beck:
A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data. Bioinform. 29(2): 189-196 (2013) - 2011
- [j1]Cristian Taccioli, Vincenza Maselli, Jesper Tegnér, David Gomez-Cabrero, Gioia Altobelli, Warren Emmett, Francesco Lescai, Stefano Gustincich, Elia Stupka:
ParkDB: a Parkinson's disease gene expression database. Database J. Biol. Databases Curation 2011 (2011)
Conference and Workshop Papers
- 2023
- [c2]Srijith Radhakrishnan, Chao-Han Huck Yang, Sumeer Ahmad Khan, Rohit Kumar, Narsis A. Kiani, David Gomez-Cabrero, Jesper Tegnér:
Whispering LLaMA: A Cross-Modal Generative Error Correction Framework for Speech Recognition. EMNLP 2023: 10007-10016 - [c1]Srijith Radhakrishnan, Chao-Han Huck Yang, Sumeer Ahmad Khan, Narsis A. Kiani, David Gomez-Cabrero, Jesper N. Tegnér:
A Parameter-Efficient Learning Approach to Arabic Dialect Identification with Pre-Trained General-Purpose Speech Model. INTERSPEECH 2023: 1958-1962
Informal and Other Publications
- 2023
- [i3]Srijith Radhakrishnan, Chao-Han Huck Yang, Sumeer Ahmad Khan, Narsis Aftab Kiani, David Gomez-Cabrero, Jesper N. Tegnér:
A Parameter-Efficient Learning Approach to Arabic Dialect Identification with Pre-Trained General-Purpose Speech Model. CoRR abs/2305.11244 (2023) - [i2]Srijith Radhakrishnan, Chao-Han Huck Yang, Sumeer Ahmad Khan, Rohit Kumar, Narsis A. Kiani, David Gomez-Cabrero, Jesper N. Tegnér:
Whispering LLaMA: A Cross-Modal Generative Error Correction Framework for Speech Recognition. CoRR abs/2310.06434 (2023) - 2018
- [i1]Rise Ooi, Chao-Han Huck Yang, Pin-Yu Chen, Víctor M. Eguíluz, Narsis Aftab Kiani, Hector Zenil, David Gomez-Cabrero, Jesper Tegnér:
Controllability, Multiplexing, and Transfer Learning in Networks using Evolutionary Learning. CoRR abs/1811.05592 (2018)
Coauthor Index
aka: Jesper N. Tegnér
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