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2020 – today
- 2023
[j16]Zixin Deng, Zheng-Hai Huang, Xinhe Miao:
Sufficient conditions for judging quasi-strictly diagonally dominant tensors. Comput. Appl. Math. 42(1) (2023)- [j15]Senbin Zhu
, Qian-Hu Jiang, Zhi-Guo Chen, Xiang Zhou, Yan-Ting Jin, Zixin Deng, Feng-Biao Guo:
Mslar: Microbial synthetic lethal and rescue database. PLoS Comput. Biol. 19(6) (2023) - 2022
- [j14]Yumeng Zhang, Yangming Zhang, Yi Xiong, Hui Wang, Zixin Deng, Jiangning Song, Hong-Yu Ou:
T4SEfinder: a bioinformatics tool for genome-scale prediction of bacterial type IV secreted effectors using pre-trained protein language model. Briefings Bioinform. 23(1) (2022) - [j13]Chuan Dong, Xin Wang, Cong Ma, Zhi Zeng, Dong-Kai Pu, Shuo Liu, Candy-S. Wu, Shixin Chen, Zixin Deng, Feng-Biao Guo:
Anti-CRISPRdb v2.2: an online repository of anti-CRISPR proteins including information on inhibitory mechanisms, activities and neighbors of curated anti-CRISPR proteins. Database J. Biol. Databases Curation 2022(2022) (2022) - [j12]Meng Wang, Ying-Xian Goh, Cui Tai, Hui Wang, Zixin Deng, Hong-Yu Ou:
VRprofile2: detection of antibiotic resistance-associated mobilome in bacterial pathogens. Nucleic Acids Res. 50(W1): 768-773 (2022)
2010 – 2019
- 2019
- [j11]Meng Liu, Xiaobin Li, Yingzhou Xie, Dexi Bi, Jingyong Sun, Jun Li, Cui Tai, Zixin Deng, Hong-Yu Ou:
ICEberg 2.0: an updated database of bacterial integrative and conjugative elements. Nucleic Acids Res. 47(Database-Issue): D660-D665 (2019) - 2018
- [j10]Jun Li, Cui Tai, Zixin Deng, Weihong Zhong, Yongqun He, Hong-Yu Ou:
VRprofile: gene-cluster-detection-based profiling of virulence and antibiotic resistance traits encoded within genome sequences of pathogenic bacteria. Briefings Bioinform. 19(4): 566-574 (2018) - [j9]Yingzhou Xie, Yiqing Wei, Yue Shen, Xiaobin Li, Hao Zhou, Cui Tai, Zixin Deng, Hong-Yu Ou:
TADB 2.0: an updated database of bacterial type II toxin-antitoxin loci. Nucleic Acids Res. 46(Database-Issue): D749-D753 (2018) - [j8]Xiaobin Li, Yingzhou Xie, Meng Liu, Cui Tai, Jingyong Sun, Zixin Deng, Hong-Yu Ou:
oriTfinder: a web-based tool for the identification of origin of transfers in DNA sequences of bacterial mobile genetic elements. Nucleic Acids Res. 46(Webserver-Issue): W229-W234 (2018) - 2017
- [j7]Zhe Deng, Weizhong Tu, Zixin Deng, Qian-Nan Hu:
PhID: An Open-Access Integrated Pharmacology Interactions Database for Drugs, Targets, Diseases, Genes, Side-Effects, and Pathways. J. Chem. Inf. Model. 57(10): 2395-2400 (2017) - [j6]Weizhong Tu, Shaozhen Ding, Ling Wu, Zhe Deng, Hui Zhu, Xiaotong Xu, Chen Lin, Chaonan Ye, Minlu Han, Mengna Zhao, Juan Liu, Zixin Deng, Junni Chen, Dong-Qing Wei, Qian-Nan Hu:
SynBioEcoli: a comprehensive metabolism network of engineered E. coli in three dimensional visualization. Quant. Biol. 5(1): 99-104 (2017) - 2014
- [c1]Caihua Wang, Juan Liu, Fei Luo, Yafang Tan, Zixin Deng, Qian-Nan Hu:
Pairwise input neural network for target-ligand interaction prediction. BIBM 2014: 67-70 - 2013
- [j5]Dexi Bi, Linmeng Liu, Cui Tai, Zixin Deng, Kumar Rajakumar, Hong-Yu Ou:
SecReT4: a web-based bacterial type IV secretion system resource. Nucleic Acids Res. 41(Database-Issue): 660-665 (2013) - 2012
- [j4]Dexi Bi, Zhen Xu, Ewan M. Harrison, Cui Tai, Yiqing Wei, Xinyi He, Shiru Jia, Zixin Deng, Kumar Rajakumar, Hong-Yu Ou:
ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria. Nucleic Acids Res. 40(Database-Issue): 621-626 (2012) - 2011
- [j3]Yucheng Shao, Ewan M. Harrison, Dexi Bi, Cui Tai, Xinyi He, Hong-Yu Ou, Kumar Rajakumar, Zixin Deng:
TADB: a web-based resource for Type 2 toxin-antitoxin loci in bacteria and archaea. Nucleic Acids Res. 39(Database-Issue): 606-611 (2011) - 2010
- [j2]Yucheng Shao, Xinyi He, Ewan M. Harrison, Cui Tai, Hong-Yu Ou, Kumar Rajakumar, Zixin Deng:
mGenomeSubtractor: a web-based tool for parallel in silico subtractive hybridization analysis of multiple bacterial genomes. Nucleic Acids Res. 38(Web-Server-Issue): 194-200 (2010)
2000 – 2009
- 2007
- [j1]Hong-Yu Ou, Xinyi He, Ewan M. Harrison, Bridget R. Kulasekara, Ali Bin Thani, Aras Kadioglu, Stephen Lory, Jay C. D. Hinton, Michael R. Barer, Zixin Deng, Kumar Rajakumar:
MobilomeFINDER: web-based tools for in silico and experimental discovery of bacterial genomic islands. Nucleic Acids Res. 35(Web-Server-Issue): 97-104 (2007)
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