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ORCIDAndreas Wilke
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2020 – today
- 2024
[i5]Matteo Turilli, Mihael Hategan-Marandiuc, Mikhail Titov, Ketan Maheshwari, Aymen Alsaadi, André Merzky, Ramon Arambula, Mikhail Zakharchanka, Matt Cowan, Justin M. Wozniak, Andreas Wilke, Ozgur Ozan Kilic, Kyle Chard, Rafael Ferreira da Silva, Shantenu Jha, Daniel E. Laney:
ExaWorks Software Development Kit: A Robust and Scalable Collection of Interoperable Workflow Technologies. CoRR abs/2407.16646 (2024)- [i4]Jamie C. Overbeek, Alexander Partin, Thomas S. Brettin, Nicholas Chia, Oleksandr Narykov, Priyanka Vasanthakumari, Andreas Wilke, Yitan Zhu, Austin Clyde, Sara Jones, Rohan Gnanaolivu, Yuanhang Liu, Jun Jiang, Chen Wang, Carter Knutson, Andrew D. McNaughton, Neeraj Kumar, Gayara Demini Fernando, Souparno Ghosh, Cesar Sanchez-Villalobos, Ruibo Zhang, Ranadip Pal, M. Ryan Weil, Rick L. Stevens:
Assessing Reusability of Deep Learning-Based Monotherapy Drug Response Prediction Models Trained with Omics Data. CoRR abs/2409.12215 (2024) - 2023
- [c11]Mihael Hategan-Marandiuc
, André Merzky, Nicholson T. Collier, Ketan Maheshwari, Jonathan Ozik, Matteo Turilli, Andreas Wilke, Justin M. Wozniak, Kyle Chard, Ian T. Foster, Rafael Ferreira da Silva, Shantenu Jha, Daniel E. Laney:
PSI/J: A Portable Interface for Submitting, Monitoring, and Managing Jobs. e-Science 2023: 1-10 - [c10]Justin M. Wozniak, Rajeev Jain, Andreas Wilke, Rylie Weaver, Alexander Partin, Thomas S. Brettin, Rick Stevens:
An Automation Framework for Comparison of Cancer Response Models Across Configurations. e-Science 2023: 1-10 - [i3]Mihael Hategan-Marandiuc, André Merzky, Nicholson T. Collier, Ketan Maheshwari, Jonathan Ozik, Matteo Turilli, Andreas Wilke, Justin M. Wozniak, Kyle Chard, Ian T. Foster, Rafael Ferreira da Silva, Shantenu Jha, Daniel E. Laney:
PSI/J: A Portable Interface for Submitting, Monitoring, and Managing Jobs. CoRR abs/2307.07895 (2023) - 2020
- [c9]Jana Jarecki, Andreas Wilke:
The Relevance of Subjective Benefits in Risky Choice Across ten Domains of Life. CogSci 2020 - [c8]Felix Lorenz, Lauritz Thamsen, Andreas Wilke, Ilja Behnke, Jens Waldmüller-Littke, Ilya Komarov, Odej Kao, Manfred Paeschke:
Fingerprinting Analog IoT Sensors for Secret-Free Authentication. ICCCN 2020: 1-6 - [i2]Felix Lorenz, Lauritz Thamsen, Andreas Wilke, Ilja Behnke, Jens Waldmüller-Littke, Ilya Komarov, Odej Kao, Manfred Paeschke:
Fingerprinting Analog IoT Sensors for Secret-Free Authentication. CoRR abs/2006.06296 (2020)
2010 – 2019
- 2019
- [j14]Folker Meyer, Saurabh Bagchi, Somali Chaterji, Wolfgang Gerlach, Ananth Grama, Travis Harrison, Tobias Paczian, William L. Trimble, Andreas Wilke:
MG-RAST version 4 - lessons learned from a decade of low-budget ultra-high-throughput metagenome analysis. Briefings Bioinform. 20(4): 1151-1159 (2019) - [j13]Tobias Paczian, William L. Trimble, Wolfgang Gerlach, Travis Harrison, Andreas Wilke, Folker Meyer:
The MG-RAST API explorer: an on-ramp for RESTful query composition. BMC Bioinform. 20(1): 561:1-561:8 (2019) - [j12]Manfred Paeschke, Walter Fumy, Andreas Wilke:
Ensuring Security & Trust in a Post-Quantum Environment. Datenschutz und Datensicherheit 43(7): 440-443 (2019) - 2018
- [i1]Folker Meyer, Robert D. Finn, Wolfgang Gerlach, Alex L. Mitchell, Travis Harrison, Andreas Wilke:
On the way to research objects for environmental genomics (or metagenomics). RO 2018 - 2016
- [j11]Andreas Wilke, Jared Bischof, Wolfgang Gerlach, Elizabeth M. Glass, Travis Harrison, Kevin P. Keegan, Tobias Paczian, William L. Trimble, Saurabh Bagchi, Ananth Grama, Somali Chaterji, Folker Meyer:
The MG-RAST metagenomics database and portal in 2015. Nucleic Acids Res. 44(Database-Issue): 590-594 (2016) - 2015
- [j10]Andreas Wilke, Jared Bischof, Travis Harrison, Tom Brettin, Mark D'Souza, Wolfgang Gerlach, Hunter Matthews, Tobias Paczian, Jared Wilkening, Elizabeth M. Glass, Narayan Desai, Folker Meyer:
A RESTful API for Accessing Microbial Community Data for MG-RAST. PLoS Comput. Biol. 11(1) (2015) - [c7]Andreas Wilke, Wolfgang Gerlach, Travis Harrison, Tobias Paczian, Wei Tang, William L. Trimble, Jared Wilkening, Narayan Desai, Folker Meyer:
Shock: Active Storage for Multicloud Streaming Data Analysis. BDC 2015: 68-72 - [c6]Wolfgang Gerlach, Wei Tang, Andreas Wilke, Dan Olson, Folker Meyer:
Container Orchestration for Scientific Workflows. IC2E 2015: 377-378 - 2014
- [c5]Wei Tang, Jared Bischof, Narayan Desai, Kanak Mahadik, Wolfgang Gerlach, Travis Harrison, Andreas Wilke, Folker Meyer:
Workload characterization for MG-RAST metagenomic data analytics service in the cloud. IEEE BigData 2014: 56-63 - [c4]Wolfgang Gerlach, Wei Tang, Kevin P. Keegan, Travis Harrison, Andreas Wilke, Jared Bischof, Mark D'Souza, Scott Devoid, Daniel E. Murphy-Olson, Narayan Desai, Folker Meyer:
Skyport: container-based execution environment management for multi-cloud scientific workflows. DataCloud@SC 2014: 25-32 - 2013
- [c3]Wei Tang, Jared Wilkening, Narayan Desai, Wolfgang Gerlach, Andreas Wilke, Folker Meyer:
A scalable data analysis platform for metagenomics. IEEE BigData 2013: 21-26 - 2012
- [j9]Andreas Wilke, Travis Harrison, Jared Wilkening, Dawn Field, Elizabeth M. Glass, Nikos Kyrpides, Konstantinos Mavrommatis, Folker Meyer:
The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools. BMC Bioinform. 13: 141 (2012) - [j8]William L. Trimble, Kevin P. Keegan, Mark D'Souza, Andreas Wilke, Jared Wilkening, Jack A. Gilbert, Folker Meyer:
Short-read reading-frame predictors are not created equal: sequence error causes loss of signal. BMC Bioinform. 13: 183 (2012) - [j7]Kevin P. Keegan, William L. Trimble, Jared Wilkening, Andreas Wilke, Travis Harrison, Mark D'Souza, Folker Meyer:
A Platform-Independent Method for Detecting Errors in Metagenomic Sequencing Data: DRISEE. PLoS Comput. Biol. 8(6) (2012) - 2011
- [j6]Suparna Mitra, Paul Rupek, Daniel C. Richter, Tim Urich, Jack A. Gilbert, Folker Meyer, Andreas Wilke, Daniel H. Huson:
Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG. BMC Bioinform. 12(S-1): S21 (2011) - [j5]Andreas Wilke, Jared Wilkening, Elizabeth M. Glass, Narayan Desai, Folker Meyer:
An experience report: porting the MG-RAST rapid metagenomics analysis pipeline to the cloud. Concurr. Comput. Pract. Exp. 23(17): 2250-2257 (2011) - [c2]Thomas T. Hills, Rui Mata, Andreas Wilke, Gregory R. Samanez-Larkin:
Exploration and Exploitation in Memory Search Across the Lifespan. CogSci 2011
2000 – 2009
- 2009
- [j4]Andreas Wilke, John M. C. Hutchinson, Peter M. Todd, Uwe Czienskowski:
Fishing for the Right Words: Decision Rules for Human Foraging Behavior in Internal Search Tasks. Cogn. Sci. 33(3): 497-529 (2009) - [c1]Jared Wilkening, Andreas Wilke, Narayan Desai, Folker Meyer:
Using clouds for metagenomics: A case study. CLUSTER 2009: 1-6 - 2008
- [j3]Folker Meyer, Daniel Paarmann, Mark D'Souza, Robert Olson, Elizabeth M. Glass, Michael Kubal, Tobias Paczian, Alexis A. Rodriguez, Rick Stevens, Andreas Wilke, Jared Wilkening, Robert A. Edwards:
The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinform. 9 (2008) - 2007
- [j2]Hans-Michael Kaltenbach, Andreas Wilke, Sebastian Böcker:
SAMPI: Protein Identification with Mass Spectra Alignments. BMC Bioinform. 8 (2007) - 2005
- [j1]Alexander Goesmann, Burkhard Linke, Daniela Bartels, Michael Dondrup, Lutz Krause, Heiko Neuweger, Sebastian Oehm, Tobias Paczian, Andreas Wilke, Folker Meyer:
BRIGEP - the BRIDGE-based genome-transcriptome-proteome browser. Nucleic Acids Res. 33(Web-Server-Issue): 710-716 (2005)
Coauthor Index
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