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ORCIDNúria López-Bigas
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- affiliation: Pompeu Fabra University, Barcelona, Spain
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Journal Articles
- 2022
[j18]José Bonet, Mandi Chen
, Marc Dabad, Simon Heath, Abel Gonzalez-Perez, Núria López-Bigas, Jens Lagergren:
DeepMP: a deep learning tool to detect DNA base modifications on Nanopore sequencing data. Bioinform. 38(5): 1235-1243 (2022)- [j17]Miranda D. Stobbe, Abel Gonzalez-Perez, Núria López-Bigas, Ivo Glynne Gut:
Ten simple rules for a successful international consortium in big data omics. PLoS Comput. Biol. 18(10): 1010546 (2022) - 2020
- [j16]Nico Borgsmüller, José Bonet, Francesco Marass, Abel Gonzalez-Perez, Núria López-Bigas, Niko Beerenwinkel:
BnpC: Bayesian non-parametric clustering of single-cell mutation profiles. Bioinform. 36(19): 4854-4859 (2020) - [j15]Esther Rheinbay, Morten Muhlig Nielsen, Federico Abascal, Jeremiah Wala, Ofer Shapira, Grace Tiao, Henrik Hornshøj, Julian M. Hess, Randi Istrup Juul, Ziao Lin, Lars Feuerbach, Radhakrishnan Sabarinathan, Tobias Madsen, Jaegil Kim, Loris Mularoni, Shimin Shuai, Andrés Lanzós, Carl Herrmann, Yosef E. Maruvka, Ciyue Shen, Samirkumar B. Amin, Pratiti Bandopadhayay, Johanna Bertl, Keith A. Boroevich, John Busanovich, Joana Carlevaro-Fita, Dimple Chakravarty, Calvin Wing Yiu Chan, David Craft, Priyanka Dhingra, Klev Diamanti, Nuno A. Fonseca, Abel Gonzalez-Perez, Qianyun Guo, Mark P. Hamilton, Nicholas J. Haradhvala, Chen Hong, Keren Isaev, Todd A. Johnson, Malene Juul, André Kahles, Abdullah Kahraman, Youngwook Kim, Jan Komorowski, Kiran Kumar, Sushant Kumar, Donghoon Lee, Kjong-Van Lehmann, Yilong Li, Eric Minwei Liu, Lucas Lochovsky, Keunchil Park, Oriol Pich, Nicola D. Roberts, Gordon Saksena, Steven E. Schumacher, Nikos Sidiropoulos, Lina Sieverling, Nasa Sinnott-Armstrong, Chip Stewart, David Tamborero, Jose M. C. Tubio, Husen M. Umer, Liis Uusküla-Reimand, Claes Wadelius, Lina Wadi, Xiaotong Yao, Cheng-Zhong Zhang, Jing Zhang, James E. Haber, Asger Hobolth, Marcin Imielinski, Manolis Kellis, Michael S. Lawrence, Christian von Mering, Hidewaki Nakagawa, Benjamin J. Raphael, Mark A. Rubin, Chris Sander, Lincoln D. Stein, Joshua M. Stuart, Tatsuhiko Tsunoda, David A. Wheeler, Rory Johnson, Jüri Reimand, Mark Gerstein, Ekta Khurana, Peter J. Campbell, Núria López-Bigas, Gary D. Bader, Jonathan Barenboim, Rameen Beroukhim, Søren Brunak, Ken Chen, Jung Kyoon Choi, Jordi Deu-Pons, J. Lynn Fink, Joan Frigola, Carlo Gambacorti Passerini, Dale W. Garsed, Gad Getz, Ivo Glynne Gut, David Haan, Arif Ozgun Harmanci, Mohamed Helmy, Ermin Hodzic, José M. G. Izarzugaza, Jong K. Kim, Jan O. Korbel, Erik Larsson, Shantao Li, Xiaotong Li, Shaoke Lou, Kathleen Marchal, Iñigo Martincorena, Alexander Martínez-Fundichely, Patrick D. McGillivray, William Meyerson, Ferran Muiños, Marta Paczkowska, Kiejung Park, Jakob Skou Pedersen, Tirso Pons, Sergio Pulido-Tamayo, Iker Reyes-Salazar, Matthew A. Reyna, Carlota Rubio-Perez, Süleyman Cenk Sahinalp, Leonidas Salichos, Mark Shackleton, Raunak Shrestha, Alfonso Valencia, Miguel Vazquez, Lieven P. C. Verbeke, Jiayin Wang, Jonathan Warrell, Sebastian M. Waszak, Joachim Weischenfeldt, Guanming Wu, Jun Yu, Xuanping Zhang, Yan Zhang, Zhongming Zhao, Lihua Zou, Kadir C. Akdemir, Eva G. Alvarez, Adrian Baez-Ortega, Paul C. Boutros, David D. L. Bowtell, Benedikt Brors, Kathleen H. Burns, Kin Chan, Isidro Cortés-Ciriano, Ana Dueso-Barroso, Andrew J. Dunford, Paul A. Edwards, Xavier Estivill, Dariush Etemadmoghadam, Milana Frenkel-Morgenstern, Dmitry A. Gordenin, Barbara Hutter, David T. W. Jones, Young Seok Ju, Marat D. Kazanov, Leszek J. Klimczak, Youngil Koh, Eunjung Alice Lee, Jake June-Koo Lee, Andy G. Lynch, Geoff MacIntyre, Florian Markowetz, Matthew Meyerson, Satoru Miyano, Fabio C. P. Navarro, Stephan Ossowski, Peter J. Park, John V. Pearson, Montserrat Puiggròs, Karsten Rippe, Steven A. Roberts, Bernardo Rodriguez-Martin, Ralph Scully, David Torrents, Izar Villasante, Nicola Waddell, Jeremiah A. Wala, Lixing Yang, Sung-Soo Yoon, Jorge Zamora:
Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. Nat. 578(7793): 102-111 (2020) - 2019
- [j14]Claudia Arnedo-Pac, Loris Mularoni, Ferran Muiños, Abel Gonzalez-Perez, Núria López-Bigas:
OncodriveCLUSTL: a sequence-based clustering method to identify cancer drivers. Bioinform. 35(22): 4788-4790 (2019) - [j13]Claudia Arnedo-Pac, Loris Mularoni, Ferran Muiños, Abel Gonzalez-Perez, Núria López-Bigas:
OncodriveCLUSTL: a sequence-based clustering method to identify cancer drivers. Bioinform. 35(24): 5396 (2019) - 2014
- [j12]Jordi Deu-Pons, Michael P. Schroeder, Núria López-Bigas:
jHeatmap: an interactive heatmap viewer for the web. Bioinform. 30(12): 1757-1758 (2014) - [j11]Michael P. Schroeder, Carlota Rubio-Perez, David Tamborero, Abel Gonzalez-Perez, Núria López-Bigas:
OncodriveROLE classifies cancer driver genes in loss of function and activating mode of action. Bioinform. 30(17): 549-555 (2014) - [j10]Andrea Gobbi, Francesco Iorio, Kevin J. Dawson, David C. Wedge, David Tamborero, Ludmil B. Alexandrov, Núria López-Bigas, Mathew Garnett, Giuseppe Jurman, Julio Saez-Rodriguez:
Fast randomization of large genomic datasets while preserving alteration counts. Bioinform. 30(17): 617-623 (2014) - 2013
- [j9]David Tamborero, Abel Gonzalez-Perez, Núria López-Bigas:
OncodriveCLUST: exploiting the positional clustering of somatic mutations to identify cancer genes. Bioinform. 29(18): 2238-2244 (2013) - 2012
- [j8]Xavier Rafael Palou, Michael P. Schroeder, Núria López-Bigas:
SVGMap: configurable image browser for experimental data. Bioinform. 28(1): 119-120 (2012) - [j7]Sam Ng, Eric A. Collisson, Artem Sokolov, Theodore Goldstein, Abel Gonzalez-Perez, Núria López-Bigas, Christopher Benz, David Haussler, Joshua M. Stuart:
PARADIGM-SHIFT predicts the function of mutations in multiple cancers using pathway impact analysis. Bioinform. 28(18): 640-646 (2012) - 2011
- [j6]Jonathan M. Guberman, Jiye Ai, Olivier Arnaiz, Joachim Baran, Andrew Blake, Richard A. Baldock, Claude Chelala, David Croft, Anthony Cros, Rosalind J. Cutts, Alex Di Génova, Simon A. Forbes, Takatomo Fujisawa, Emanuela Gadaleta, David M. Goodstein, Gunes Gundem, Bernard Haggarty, Syed Haider, Matthew Hall, Todd W. Harris, Robin Haw, Shen Hu, Simon J. Hubbard, Jack Hsu, Vivek Iyer, Philip Jones, Toshiaki Katayama, Rhoda Kinsella, Lei Kong, Daniel Lawson, Yong Liang, Núria López-Bigas, Jie Luo, Michael J. Lush, Jeremy C. Mason, François Moreews, Nelson Ndegwa, Darren J. Oakley, Christian Perez-Llamas, Michael Primig, Elena Rivkin, Steven Rosanoff, Rebecca Shepherd, Reinhard Simon, William C. Skarnes, Damian Smedley, Linda Sperling, William Spooner, Peter Stevenson, Kevin R. Stone, Jon W. Teague, Jun Wang, Jianxin Wang, Brett Whitty, David Tai Wai Wong, Marie Wong-Erasmus, Long Yao, Ken Youens-Clark, Christina K. Yung, Junjun Zhang, Arek Kasprzyk:
BioMart Central Portal: an open database network for the biological community. Database J. Biol. Databases Curation 2011 (2011) - [j5]Christian Perez-Llamas, Gunes Gundem, Núria López-Bigas:
Integrative Cancer Genomics (IntOGen) in Biomart. Database J. Biol. Databases Curation 2011 (2011) - 2008
- [j4]Simon J. Furney, Stephen F. Madden, Tomasz A. Kisiel, Desmond G. Higgins, Núria López-Bigas:
Distinct Patterns in the Regulation and Evolution of Human Cancer Genes. Silico Biol. 8(1): 33-46 (2008) - 2007
- [j3]Borja Calvo, Núria López-Bigas, Simon J. Furney, Pedro Larrañaga, José Antonio Lozano:
A partially supervised classification approach to dominant and recessive human disease gene prediction. Comput. Methods Programs Biomed. 85(3): 229-237 (2007) - 2006
- [j2]Núria López-Bigas, Benjamin J. Blencowe, Christos A. Ouzounis:
Highly consistent patterns for inherited human diseases at the molecular level. Bioinform. 22(3): 269-277 (2006) - 2005
- [j1]Leon Goldovsky, Paul J. Janssen, Dag G. Ahrén, Benjamin Audit, Ildefonso Cases, Nikos Darzentas, Anton J. Enright, Núria López-Bigas, José M. Peregrín-Alvarez, Mike Smith, Sophia Tsoka, Victor Kunin, Christos A. Ouzounis:
CoGenT++: an extensive and extensible data environment for computational genomics. Bioinform. 21(19): 3806-3810 (2005)
Conference and Workshop Papers
- 2020
- [c2]Nico Borgsmüller, José Bonet, Francesco Marass, Abel Gonzalez-Perez, Núria López-Bigas, Niko Beerenwinkel:
Bayesian Non-parametric Clustering of Single-Cell Mutation Profiles. RECOMB 2020: 229-230 - 2004
- [c1]Núria López-Bigas, Christos A. Ouzounis:
Properties of Genes involved in Human Genetic Disease. Spanish Bioinformatics Conference 2004: 45-46
Coauthor Index
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