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Brad A. Chapman
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2010 – 2019
- 2018
- [c2]Ei Pa Pa Pe-Than, James D. Herbsleb, Alexander Nolte
, Elizabeth Gerber, Brittany Fiore-Gartland, Brad Chapman, Aurelia Moser, Nancy Wilkins-Diehr:
The 2nd Workshop on Hacking and Making at Time-Bounded Events: Current Trends and Next Steps in Research and Event Design. CHI Extended Abstracts 2018 - [i4]Nomi L. Harris
, Heather Wiencko, Brad Chapman, Peter J. A. Cock
, Karsten Hokamp
, Hilmar Lapp
, Christopher J. Fields
, Bastian Greshake Tzovaras
:
The 2018 Bioinformatics Open Source Conference (GCCBOSC 2018). F1000Research 7: 1309 (2018) - 2017
- [j12]Steffen Möller
, Stuart W. Prescott
, Lars Wirzenius, Petter Reinholdtsen, Brad Chapman
, Pjotr Prins
, Stian Soiland-Reyes
, Fabian Klötzl, Andrea Bagnacani
, Matús Kalas
, Andreas Tille, Michael R. Crusoe
:
Robust Cross-Platform Workflows: How Technical and Scientific Communities Collaborate to Develop, Test and Share Best Practices for Data Analysis. Data Sci. Eng. 2(3): 232-244 (2017) - [c1]Anna Filippova, Brad Chapman, R. Stuart Geiger, James D. Herbsleb, Arun Kalyanasundaram, Erik H. Trainer, Aurelia Moser, Arlin Stoltzfus:
Hacking and Making at Time-Bounded Events: Current Trends and Next Steps in Research and Event Design. CSCW Companion 2017: 363-370 - [i3]Nomi L. Harris
, Peter J. A. Cock, Brad Chapman, Christopher J. Fields
, Karsten Hokamp
, Hilmar Lapp
, Monica C. Munoz-Torres, Bastian Greshake Tzovaras
, Heather Wiencko:
The 2017 Bioinformatics Open Source Conference (BOSC). F1000Research 6: 1858- (2017) - [i2]Michael J. Steinbaugh
, Lorena Pantano
, Rory D. Kirchner
, Víctor Barrera
, Brad A. Chapman, Mary E. Piper, Meeta Mistry, Radhika S. Khetani
, Kayleigh Rutherford, Oliver Hofmann, John N. Hutchinson
, Shannan J. Ho Sui:
bcbioRNASeq: R package for bcbio RNA-seq analysis. F1000Research 6: 1976- (2017) - 2016
- [j11]Nomi L. Harris, Peter J. A. Cock, Hilmar Lapp
, Brad Chapman, Rob Davey, Christopher J. Fields
, Karsten Hokamp
, Monica C. Munoz-Torres:
The 2015 Bioinformatics Open Source Conference (BOSC 2015). PLoS Comput. Biol. 12(2) (2016) - [i1]Nomi L. Harris
, Peter J. A. Cock
, Brad Chapman, Christopher J. Fields
, Karsten Hokamp
, Hilmar Lapp
, Monica C. Munoz-Torres, Heather Wiencko:
The 2016 Bioinformatics Open Source Conference (BOSC). F1000Research 5: 2464 (2016) - 2015
- [j10]Nomi L. Harris, Peter J. A. Cock, Brad A. Chapman, Jeremy Goecks, Hans-Rudolf Hotz, Hilmar Lapp
:
The Bioinformatics Open Source Conference (BOSC) 2013. Bioinform. 31(2): 299-300 (2015) - 2014
- [j9]Steffen Möller
, Enis Afgan, Michael Banck, Raoul Jean Pierre Bonnal
, Timothy Booth, John Chilton
, Peter J. A. Cock, Markus Gumbel, Nomi L. Harris, Richard C. G. Holland
, Matús Kalas
, László Kaján, Eri Kibukawa, David R. Powell
, Pjotr Prins
, Jacqueline Quinn, Olivier Sallou, Francesco Strozzi
, Torsten Seemann
, Clare Sloggett
, Stian Soiland-Reyes
, William Spooner, Sascha Steinbiss
, Andreas Tille, Anthony J. Travis
, Roman Guimera, Toshiaki Katayama, Brad A. Chapman:
Community-driven development for computational biology at Sprints, Hackathons and Codefests. BMC Bioinform. 15(S-14): S7 (2014) - 2013
- [j8]Umadevi Paila, Brad A. Chapman, Rory D. Kirchner
, Aaron R. Quinlan
:
GEMINI: Integrative Exploration of Genetic Variation and Genome Annotations. PLoS Comput. Biol. 9(7) (2013) - 2012
- [j7]Konstantinos Krampis, Tim Booth, Brad Chapman
, Bela Tiwari, Mesude Bicak, Dawn Field, Karen E. Nelson:
Cloud BioLinux: pre-configured and on-demand bioinformatics computing for the genomics community. BMC Bioinform. 13: 42 (2012) - [j6]Eric Talevich
, Brandon M. Invergo
, Peter J. A. Cock, Brad A. Chapman
:
Bio.Phylo: A unified toolkit for processing, analyzing and visualizing phylogenetic trees in Biopython. BMC Bioinform. 13: 209 (2012) - [j5]Enis Afgan, Brad Chapman
, James Taylor
:
CloudMan as a platform for tool, data, and analysis distribution. BMC Bioinform. 13: 315 (2012) - [j4]Shannan J. Ho Sui, Kimberly Begley, Dorothy Reilly
, Brad Chapman
, Ray McGovern, Philippe Rocca-Serra, Eamonn Maguire, Gabriel M. Altschuler, Terah A. A. Hansen, Ramakrishna Sompallae, Andrei Krivtsov, Ramesh A. Shivdasani, Scott A. Armstrong, Aedín C. Culhane
, Mick Correll, Susanna-Assunta Sansone
, Oliver Hofmann
, Winston Hide
:
The Stem Cell Discovery Engine: an integrated repository and analysis system for cancer stem cell comparisons. Nucleic Acids Res. 40(Database-Issue): 984-991 (2012) - 2010
- [j3]Enis Afgan, Dannon Baker, Nathan Coraor, Brad Chapman
, Anton Nekrutenko
, James Taylor
:
Galaxy CloudMan: delivering cloud compute clusters. BMC Bioinform. 11(S-12): S4 (2010)
2000 – 2009
- 2009
- [j2]Peter J. A. Cock, Tiago Antao
, Jeffrey T. Chang, Brad A. Chapman
, Cymon J. Cox
, Andrew Dalke, Iddo Friedberg
, Thomas Hamelryck
, Frank Kauff, Bartek Wilczynski
, Michiel J. L. de Hoon
:
Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinform. 25(11): 1422-1423 (2009) - 2004
- [j1]Brad A. Chapman
, John E. Bowers
, Stefan R. Schulze, Andrew H. Paterson:
A comparative phylogenetic approach for dating whole genome duplication events. Bioinform. 20(2): 180-185 (2004)
Coauthor Index
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