BMC Medical Informatics & Decision Making, Volume 18 - Supplements

Volume 18, Number S-1, March 2018

Proceedings from the 3rd China Health Information Processing Conference (CHIP 2017)

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  Xieling Chen, Haoran Xie, Fu Lee Wang, Ziqing Liu, Juan Xu, Tianyong Hao:
  A bibliometric analysis of natural language processing in medical research. 14:1-14:14
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  Tianyong Hao, Xiaoyi Pan, Zhiying Gu, Yingying Qu, Heng Weng:
  A pattern learning-based method for temporal expression extraction and normalization from multi-lingual heterogeneous clinical texts. 15-25
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  Kuo Yang, Guangming Liu, Ning Wang, Runshun Zhang, Jian Yu, Jianxin Chen, Xuezhong Zhou:
  Heterogeneous network propagation for herb target identification. 27-37
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  Haihong Guo, Xu Na, Jiao Li:
  Qcorp: an annotated classification corpus of Chinese health questions. 39-47
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  Lingtong Min, Qi Tian, Xudong Lu, Jiye An, Huilong Duan:
  An openEHR based approach to improve the semantic interoperability of clinical data registry. 49-56
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  Weiqi Chen, Yong Hu, Xiangzhou Zhang, Lijuan Wu, Kang Liu, Jianqin He, Zilin Tang, Xing Song, Lemuel R. Waitman, Mei Liu:
  Causal risk factor discovery for severe acute kidney injury using electronic health records. 57-63
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  Yue-Shu Zhao, Kunli Zhang, Hongchao Ma, Kun Li:
  Leveraging text skeleton for de-identification of electronic medical records. 65-72

Volume 18, Number S-2, July 2018

Selected extended articles from the 2nd International Workshop on Semantics-Powered Data Analytics

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  Rui Zhang, Sisi Ma, Liesa Shanahan, Jessica Munroe, Sarah Horn, Stuart M. Speedie:
  Discovering and identifying New York heart association classification from electronic health records. 5-13
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  Yadan Fan, Rui Zhang:
  Using natural language processing methods to classify use status of dietary supplements in clinical notes. 15-22
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  Hee-Jin Lee, Yaoyun Zhang, Min Jiang, Jun Xu, Cui Tao, Hua Xu:
  Identifying direct temporal relations between time and events from clinical notes. 23-34
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  Kaixian Yu, Pei-Yau Lung, Tingting Zhao, Peixiang Zhao, Yan-Yuan Tseng, Jinfeng Zhang:
  Automatic extraction of protein-protein interactions using grammatical relationship graph. 35-43
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  Haodi Li, Ming Yang, Qingcai Chen, Buzhou Tang, Xiaolong Wang, Jun Yan:
  Chemical-induced disease extraction via recurrent piecewise convolutional neural networks. 45-51
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  Zhiwei Chen, Zhe He, Xiuwen Liu, Jiang Bian:
  Evaluating semantic relations in neural word embeddings with biomedical and general domain knowledge bases. 53-68
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  Zhe He, Cui Tao, Jiang Bian, Rui Zhang, Jingshan Huang:
  Introduction: selected extended articles from the 2nd International Workshop on Semantics-Powered Data Analytics (SEPDA 2017). 56:1-56:4
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  Xinyuan Zhang, Shiqi Wang, Jie Liu, Cui Tao:
  Towards improving diagnosis of skin diseases by combining deep neural network and human knowledge. 69-76
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  Jingcheng Du, Yaoyun Zhang, Jianhong Luo, Yuxi Jia, Qiang Wei, Cui Tao, Hua Xu:
  Extracting psychiatric stressors for suicide from social media using deep learning. 77-87
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  Rashmie Abeysinghe, Licong Cui:
  Query-constraint-based mining of association rules for exploratory analysis of clinical datasets in the National Sleep Research Resource. 89-100
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  Rebecca Lin, Muhammad Amith, Chen Liang, Rui Duan, Yong Chen, Cui Tao:
  Visualized Emotion Ontology: a model for representing visual cues of emotions. 101-113
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  Juan Antonio Lossio-Ventura, William R. Hogan, François Modave, Yi Guo, Zhe He, Xi Yang, Hansi Zhang, Jiang Bian:
  OC-2-KB: integrating crowdsourcing into an obesity and cancer knowledge base curation system. 115-127
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  Hansi Zhang, Yi Guo, Qian Li, Thomas J. George, Elizabeth Shenkman, François Modave, Jiang Bian:
  An ontology-guided semantic data integration framework to support integrative data analysis of cancer survival. 129-147
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  Huiqin Chen, Dihua Zhang, Guoping Zhang, Xiaofeng Li, Ying Liang, Mohan Vamsi Kasukurthi, Shengyu Li, Glen M. Borchert, Jingshan Huang:
  A semantics-oriented computational approach to investigate microRNA regulation on glucocorticoid resistance in pediatric acute lymphoblastic leukemia. 149-157

Volume 18, Number S-3, September 2018

Selected articles from the 7th Translational Bioinformatics Conference (TBC 2017): medical informatics and decision making

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  Khader Shameer, M. Mercedes Perez-Rodriguez, Roy Bachar, Li Li, Amy Johnson, Kipp W. Johnson, Benjamin S. Glicksberg, Milo R. Smith, Ben Readhead, Joseph Scarpa, Jebakumar Jebakaran, Patricia H. Kovatch, Sabina Lim, Wayne K. Goodman, David L. Reich, Andrew Kasarskis, Nicholas P. Tatonetti, Joel T. Dudley:
  Pharmacological risk factors associated with hospital readmission rates in a psychiatric cohort identified using prescriptome data mining. 79:1-79:11
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  Ruth Reátegui Rojas, Sylvie Ratté:
  Comparison of MetaMap and cTAKES for entity extraction in clinical notes. 13-19

Volume 18, Number S-4, December 2018

Selected articles from the IEEE BIBM International Conference on Bioinformatics & Biomedicine (BIBM) 2017: medical informatics and decision making

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  Tian Bai, Ashis Kumar Chanda, Brian L. Egleston, Slobodan Vucetic:
  EHR phenotyping via jointly embedding medical concepts and words into a unified vector space. 15-25
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  Ankur Agrawal:
  Evaluating lexical similarity and modeling discrepancies in the procedure hierarchy of SNOMED CT. 27-33
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  Moumita Bhattacharya, Claudine Jurkovitz, Hagit Shatkay:
  Chronic Kidney Disease stratification using office visit records: Handling data imbalance via hierarchical meta-classification. 35-44
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  Xiangrui Li, Dongxiao Zhu, Phillip Levy:
  Leveraging auxiliary measures: a deep multi-task neural network for predictive modeling in clinical research. 45-53
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  Anand Avati, Kenneth Jung, Stephanie Harman, Lance Downing, Andrew Y. Ng, Nigam H. Shah:
  Improving palliative care with deep learning. 55-64
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  Matin Kheirkhahan, Avirup Chakraborty, Amal A. Wanigatunga, Duane B. Corbett, Todd M. Manini, Sanjay Ranka:
  Wrist accelerometer shape feature derivation methods for assessing activities of daily living. 124:1-124:13

Volume 18, Number S-5, December 2018

Proceedings from the 2018 Sino-US Conference on Health Informatics

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  Hong Kang, Sicheng Zhou, Bin Yao, Yang Gong:
  A prototype of knowledge-based patient safety event reporting and learning system. 13-22
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  Mi-Mi Liu, Li Wen, Yong-Jia Liu, Qiao Cai, Li-Ting Li, Yongming Cai:
  Application of data mining methods to improve screening for the risk of early gastric cancer. 23-32
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  Kai Xu, Zhanfan Zhou, Tao Gong, Tianyong Hao, Wenyin Liu:
  SBLC: a hybrid model for disease named entity recognition based on semantic bidirectional LSTMs and conditional random fields. 33-44
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  Jiannan Liu, Chenyang Li, Jing Xu, Huanmei Wu:
  A patient-oriented clinical decision support system for CRC risk assessment and preventative care. 45-53
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  Xieling Chen, Ziqing Liu, Li Wei, Jun Yan, Tianyong Hao, Ruoyao Ding:
  A comparative quantitative study of utilizing artificial intelligence on electronic health records in the USA and China during 2008-2017. 55-69
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  Xiaoyan Wei, Lin Zhou, Ziyi Chen, Liangjun Zhang, Yi Zhou:
  Automatic seizure detection using three-dimensional CNN based on multi-channel EEG. 71-80
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  Na Hong, Ning Zhang, Huawei Wu, Shanshan Lu, Yue Yu, Li Hou, Yinying Lu, Hongfang Liu, Guoqian Jiang:
  Preliminary exploration of survival analysis using the OHDSI common data model: a case study of intrahepatic cholangiocarcinoma. 81-88
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  Suyan Tian, Chi Wang, Howard H. Chang:
  A longitudinal feature selection method identifies relevant genes to distinguish complicated injury and uncomplicated injury over time. 89-96
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  Ruoyao Ding, Yingying Qu, Cathy H. Wu, K. Vijay-Shanker:
  Automatic gene annotation using GO terms from cellular component domain. 97-106
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  Li Hou, Hongyu Kang, Yan Liu, Luqi Li, Jiao Li:
  Mining and standardizing chinese consumer health terms. 107-117
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  Sicheng Zhou, Hong Kang, Bin Yao, Yang Gong:
  An automated pipeline for analyzing medication event reports in clinical settings. 113:1-113:11
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  Xia Zhao, Xiaohua Li, Wei Yang, Qianjin Feng, Yi Zhou, Qiong Wang:
  Primary health information standard system based on semantic interoperability. 119-127