Stop the war!Остановите войну!
for scientists:
default search action
Google
Google Scholar
Semantic Scholar
Internet Archive Scholar
CiteSeerX
ORCIDJournal of Open Source Software, Volume 3
Volume 3, Number 21, 2018
- Brandon LeBeau
:
highlightHTML: CSS Formatting of R Markdown Documents. 185
- Gilbert Marzolin, Olivier Gimenez:
Fitting a Gamma-Gompertz survival model to capture-recapture data collected on free-ranging animal populations. 216 - Alexander D. Lindsay, Kathryn D. Huff:
Moltres: finite element based simulation of molten salt reactors. 298 - Jason Keith Moore, Antonie J. van den Bogert:
opty: Software for trajectory optimization and parameter identification using direct collocation. 300 - Paul B. Govan:
BayesianNetwork: Interactive Bayesian Network Modeling and Analysis. 425 - Lester James V. Miranda:
PySwarms: a research toolkit for Particle Swarm Optimization in Python. 433 - Jiao Y. Y. Lin, Fahima Islam, Max Kresh:
Multiphonon: Phonon Density of States tools for Inelastic Neutron Scattering Powder Data. 440 - Nathan C. Sheffield, V. P. Nagraj, Vince Reuter:
simpleCache: R caching for reproducible, distributed, large-scale projects. 463 - Markus J. Ankenbrand, Simon Pfaff, Niklas Terhoeven, Musga Qureischi, Maik Gündel, Clemens L. Weiß, Thomas Hackl, Frank Förster:
chloroExtractor: extraction and assembly of the chloroplast genome from whole genome shotgun data. 464 - Anton Rodenhauser, Wilson Good, Brian Zenger, Jess D. Tate, Kedar Aras, Brett M. Burton, Rob S. MacLeod:
PFEIFER: Preprocessing Framework for Electrograms Intermittently Fiducialized from Experimental Recordings. 472 - Pablo G. Garay, Jorge A. Vila, Osvaldo A. Martin:
CheSweet: An application to predict glycan's chemicals shifts. 488 - Björn Dahlgren:
pyodesys: Straightforward numerical integration of ODE systems from Python. 490 - Pamphile T. Roy, Sophie Ricci, Romain Dupuis, Robin Campet, Jean-Christophe Jouhaud, Cyril Fournier:
BATMAN: Statistical analysis for expensive computer codes made easy. 493 - René L. Warren:
Visualizing genome synteny with xmatchview. 497 - William McGinnis, Chapman Siu, Andre S., Hanyu Huang:
Category Encoders: a scikit-learn-contrib package of transformers for encoding categorical data. 501 - Jeremy R. Coyle, Nima S. Hejazi:
origami: A Generalized Framework for Cross-Validation in R. 512 - Stephanie J. Spielman:
phyphy: Python package for facilitating the execution and parsing of HyPhy standard analyses. 514 - R. Daniel Kortschak:
arrgh: a Go interface to the OpenCPU R server system. 517 - Björn Dahlgren:
pyneqsys: Solve symbolically defined systems of non-linear equations numerically. 531 - Sébastien Boisgérault:
Bitstream - Binary Data for Humans. 541 - Joshua T. Karpel:
IDESolver: a general purpose integro-differential equation solver. 542 - William Michael Landau:
The drake R package: a pipeline toolkit for reproducibility and high-performance computing. 550
Volume 3, Number 22, 2018
- Benny Malengier, Pavol Kison, James Tocknell, Claas Abert, Florian Bruckner, Marc-Antonio Bisotti:
ODES: a high level interface to ODE and DAE solvers. 165 - James Hiebert, Alex J. Cannon, Trevor Murdock, Stephen Sobie, Arelia Werner:
ClimDown: Climate Downscaling in R. 360 - Danilo Freire, Robert Myles McDonnell:
prisonbrief: An R package that returns tidy data from the World Prison Brief website. 361 - Shadia Mikhael, Calum D. Gray:
Masks2Metrics (M2M): A Matlab Toolbox for Gold Standard Morphometrics. 436 - Dominique Makowski:
The psycho Package: an Efficient and Publishing-Oriented Workflow for Psychological Science. 470 - James P. Howard II:
Phonetic Algorithms in R. 480 - Parker Owan, Cameron Devine, W. Tony Piaskowy:
CoreRobotics: An object-oriented C++ library with cross-language wrappers for cross-platform robot control. 489 - Jeongseok Lee, Michael X. Grey, Sehoon Ha, Tobias Kunz, Sumit Jain, Yuting Ye, Siddhartha S. Srinivasa, Mike Stilman, C. Karen Liu:
DART: Dynamic Animation and Robotics Toolkit. 500 - Roderick Bovee, Nick Greenfield:
Finch: a tool adding dynamic abundance filtering to genomic MinHashing. 505 - Kevin M. Moerman:
GIBBON: The Geometry and Image-Based Bioengineering add-On. 506 - Robert Gieseke, Sven N. Willner, Matthias Mengel:
Pymagicc: A Python wrapper for the simple climate model MAGICC. 516 - Vanessa V. Sochat:
The Experiment Factory: Reproducible Experiment Containers. 521 - Taha Zaghdoudi:
ivprobit: An R package to estimate the instrumental variables probit model. 523 - Niklas Terhoeven, Jörg Schultz, Thomas Hackl:
reper: Genome-wide identification, classification and quantification of repetitive elements without an assembled genome. 527 - Jakob Bossek:
grapherator: A Modular Multi-Step Graph Generator. 528 - Nicola Demo, Marco Tezzele, Gianluigi Rozza:
PyDMD: Python Dynamic Mode Decomposition. 530 - Matthew Pitkin:
psrqpy: a python interface for querying the ATNF pulsar catalogue. 538 - Aleksey Bilogur:
Missingno: a missing data visualization suite. 547 - Robert Reinecke:
G³M-f a global gradient-based groundwater modelling framwork. 548 - Matilda Åslin, Monika Brandt, Johan Dahlberg:
CheckQC: Quick quality control of Illumina sequencing runs. 556 - Julia Wrobel:
register: Registration for Exponential Family Functional Data. 557 - Chi-Lin Yu, Ching-Fan Sheu:
EFAshiny: An User-Friendly Shiny Application for Exploratory Factor Analysis. 567 - Ian H. Bell, Bradley Alpert, Lucas Bouck:
ChebTools: C++11 (and Python) tools for working with Chebyshev expansions. 569 - Stefanie E. LaZerte, Sam J. Albers:
weathercan: Download and format weather data from Environment and Climate Change Canada. 571 - James Tocknell:
h5preserve: Thin wrapper around h5py, inspired by camel. 581
Volume 3, Number 23, 2018
- Lincoln Mullen, Jordan Bratt:
USAboundaries: Historical and Contemporary Boundaries of the United States of America. 314 - Nuno Fachada, Agostinho C. Rosa:
micompm: A MATLAB/Octave toolbox for multivariate independent comparison of observations. 430 - David J. Mulryne, John W. Ronayne:
PyTransport: A Python package for the calculation of inflationary correlation functions. 494 - Pierre Morel:
Gramm: grammar of graphics plotting in Matlab. 568 - Peter Laurinec:
TSrepr R package: Time Series Representations. 577 - Michael Hirsch:
PyMap3D: 3-D coordinate conversions for terrestrial and geospace environments. 580 - John Mount, Nina B. Zumel:
The vtreat R package: a statistically sound data processor for predictive modeling. 584 - Donald E. Willcox, Michael Zingale:
pynucastro: an interface to nuclear reaction rates and code generator for reaction network equations. 588 - Sander Wahls, Shrinivas Chimmalgi, Peter J. Prins:
FNFT: A Software Library for Computing Nonlinear Fourier Transforms. 597 - George Datseris:
DynamicalSystems.jl: A Julia software library for chaos and nonlinear dynamics. 598 - Andreas Bender, Alexander Bauer:
coalitions: Coalition probabilities in multi-party democracies. 606 - Grega Vrbancic, Lucija Brezocnik, Uros Mlakar, Dusan Fister, Iztok Fister Jr.:
NiaPy: Python microframework for building nature-inspired algorithms. 613 - Joe Thorley:
checkr: An R package for Assertive Programming. 624 - Konstantinos Vantas:
hydroscoper: R interface to the Greek National Data Bank for Hydrological and Meteorological Information. 625 - Rory Nolan, Sergi Padilla-Parra:
ijtiff: An R package providing TIFF I/O for ImageJ users. 633 - Alessandro Gasparini:
comorbidity: An R package for computing comorbidity scores. 648 - Lincoln Mullen, Kenneth Benoit, Os Keyes, Dmitriy Selivanov, Jeffrey Arnold:
Fast, Consistent Tokenization of Natural Language Text. 655
Volume 3, Number 24, 2018
- Björn Dahlgren:
ChemPy: A package useful for chemistry written in Python. 565 - Sergio Ibarra-Espinosa, Daniel Schuch, Edmilson Dias de Freitas:
eixport: An R package to export emissions to atmospheric models. 607 - Giuseppe Cardellini, Christopher Lucien Mutel:
Temporalis: an open source software for dynamic LCA. 612 - Patrick Kofod Mogensen, Asbjørn Nilsen Riseth:
Optim: A mathematical optimization package for Julia. 615 - Daniel Amsel, André Billion, Andreas Vilcinskas, Frank Förster:
microPIECE - microRNA pipeline enhanced by CLIP experiments. 616 - Louise A. Dennis:
The MCAPL Framework including the Agent Infrastructure Layer an Agent Java Pathfinder. 617 - Sebastian Raschka:
MLxtend: Providing machine learning and data science utilities and extensions to Python's scientific computing stack. 638 - Moti Ben-Ari:
LearnSAT: A SAT Solver for Education. 639 - Casey Youngflesh:
MCMCvis: Tools to Visualize, Manipulate, and Summarize MCMC Output. 640 - Caley Finn:
OpenEPSim: An Open Exclusion Process Simulation Tool. 650 - Michael Hucka:
Spiral: splitters for identifiers in source code files. 653 - Yuan (Terry) Tang:
autoplotly: An R package for automatic generation of interactive visualizations for statistical results. 657 - Brian E. J. Rose:
CLIMLAB: a Python toolkit for interactive, process-oriented climate modeling. 659 - Nicola Demo, Marco Tezzele, Gianluigi Rozza:
EZyRB: Easy Reduced Basis method. 661 - Jasper Ginn:
qualtRics: retrieve survey data using the Qualtrics API. 690 - Júlio Hoffimann:
GeoStats.jl - High-performance geostatistics in Julia. 692 - Sebastian S. Zeki:
EndoMineR for the extraction of endoscopic and associated pathology data from medical reports. 701
Volume 3, Number 25, 2018
- Benjamin Allévius:
scanstatistics: space-time anomaly detection using scan statistics. 515 - Pi-Yueh Chuang, Olivier Mesnard, Anush Krishnan, Lorena A. Barba:
PetIBM: toolbox and applications of the immersed-boundary method on distributed-memory architectures. 558 - Ignacio Ferrés, Gregorio Iraola:
Phylen: automatic phylogenetic reconstruction using the EggNOG database. 593 - Michael Hucka:
Nostril: A nonsense string evaluator written in Python. 596 - Mike Innes:
Flux: Elegant machine learning with Julia. 602 - David E. Hudak, Douglas Johnson, Alan Chalker, Jeremy W. Nicklas, Eric Franz, Trey Dockendorf, Brian McMichael:
Open OnDemand: A web-based client portal for HPC centers. 622 - Andrew P. Smith:
humanleague: a C++ microsynthesis package with R and python interfaces. 629 - Ryan C. Brown, Joshua Moser:
HSImage: A Python and C++ library to allow interaction with ENVI-BIL hyperspectral images. 630 - Amelia Ortiz-Gil, Jordi Burguet-Castell:
Mapelia and friends: create 3D models from maps. 660 - Arjun Chennu:
MicroBenthos: a modeling framework for microbial benthic ecology. 674 - Mikkel Meyer Andersen:
malan: MAle Lineage ANalysis. 684 - Boaz Blankrot, Clemens Heitzinger:
ParticleScattering: Solving and optimizing multiple-scattering problems in Julia. 691 - Jacob Anhøj:
qicharts2: Quality Improvement Charts for R. 699 - Will Pearse, Scott Chamberlain:
Suppdata: Downloading Supplementary Data from Published Manuscripts. 721 - Sepand Haghighi, Masoomeh Jasemi, Shaahin Hessabi, Alireza Zolanvari:
PyCM: Multiclass confusion matrix library in Python. 729 - Stephen D. Turner:
qqman: an R package for visualizing GWAS results using Q-Q and manhattan plots. 731 - Ryan G. James, Christopher J. Ellison, James P. Crutchfield:
dit: a Python package for discrete information theory. 738 - Rickichard Izzo, David A. Steinman, Simone Manini, Elena Faggiano, Luca Antiga:
The Vascular Modeling Toolkit: A Python Library for the Analysis of Tubular Structures in Medical Images. 745
Volume 3, Number 26, 2018
- João P. Faria, Nuno C. Santos, Pedro Figueira, Brendon J. Brewer:
kima: Exoplanet detection in radial velocities. 487 - Antoine Cully, Konstantinos I. Chatzilygeroudis, Federico Allocati, Jean-Baptiste Mouret:
Limbo: A Flexible High-performance Library for Gaussian Processes modeling and Data-Efficient Optimization. 545 - Edward W. Doddridge, Alexey Radul:
Aronnax: An idealised isopycnal ocean model. 592 - Laurent Fasnacht:
mmappickle: Python 3 module to store memory-mapped numpy array in pickle format. 651 - Tobias C. Wood:
QUIT: QUantitative Imaging Tools. 656 - Manuel Krebber, Henrik Barthels:
MatchPy: Pattern Matching in Python. 670 - Russell Y. Neches, Camille Scott:
SuchTree: Fast, thread-safe computations with phylogenetic trees. 678 - Gregory M. Green:
dustmaps: A Python interface for maps of interstellar dust. 695 - Karl Wette, Reinhard Prix, David Keitel, Matthew Pitkin, Christoph Dreissigacker, John T. Whelan, Paola Leaci:
OctApps: a library of Octave functions for continuous gravitational-wave data analysis. 707 - Shahriar Iravanian:
fib-tf: A TensorFlow-based Cardiac Electrophysiology Simulator. 719 - Ryan R. Curtin, Marcus Edel, Mikhail Lozhnikov, Yannis Mentekidis, Sumedh Ghaisas, Shangtong Zhang:
mlpack 3: a fast, flexible machine learning library. 726 - Inom Mirzaev, Drew F. K. Williamson, Jacob G. Scott:
egtplot: A Python Package for Three-Strategy Evolutionary Games. 735 - Alessandro Gasparini, Michel Lang:
rsimsum: Summarise results from Monte Carlo simulation studies. 739 - James Bourbeau, Zigfried Hampel-Arias:
PyUnfold: A Python package for iterative unfolding. 741 - Mikkel Meyer Andersen:
Discrete Laplace mixture model with applications in forensic genetics. 748 - Daniel G. A. Smith, Johnnie Gray:
opt\_einsum - A Python package for optimizing contraction order for einsum-like expressions. 753 - Daniel Lüdecke:
sjmisc: Data and Variable Transformation Functions. 754 - Hajk-Georg Drost:
Philentropy: Information Theory and Distance Quantification with R. 765 - Jeroen F. J. Laros:
General binary file parser. 766 - Daniel Lüdecke:
ggeffects: Tidy Data Frames of Marginal Effects from Regression Models. 772 - Adam J. Jackson, Alex M. Ganose, Anna Regoutz, Russel G. Egdell, David O. Scanlon:
Galore: Broadening and weighting for simulation of photoelectron spectroscopy. 773 - Vanessa V. Sochat:
HelpMe Command Line Helper Utility. 775 - David Hagan, Andrew Tolmie, Jakub Trochim:
py-opc: operate the Alphasense OPC-N2 from a raspberry pi or other popular microcontrollers/microcomputers. 782 - Christoph Molnar, Giuseppe Casalicchio, Bernd Bischl:
iml: An R package for Interpretable Machine Learning. 786