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Journal of Integrative Bioinformatics, Volume 13
Volume 13, Number 1, 2016
- Diogo Almeida, Vasco Ariston de Carvalho Azevedo
, Artur Silva
, Jan Baumbach
:
PetriScape - A plugin for discrete Petri net simulations in Cytoscape. - Kasikrit Damkliang
, Pichaya Tandayya, Unitsa Sangket, Ekawat Pasomsub:
Integrated Automatic Workflow for Phylogenetic Tree Analysis Using Public Access and Local Web Services. - Julia Rahman, Md. Nazrul Islam Mondal, Md. Khaled Ben Islam, Md. Al Mehedi Hasan:
Feature Fusion Based SVM Classifier for Protein Subcellular Localization Prediction. - Josch Pauling, Edda Klipp:
Computational Lipidomics and Lipid Bioinformatics: Filling In the Blanks. - Richard Röttger
:
Clustering of Biological Datasets in the Era of Big Data. - Siomar de Castro Soares
, Letícia de Castro Oliveira
, Arun Kumar Jaiswal, Vasco Ariston de Carvalho Azevedo
:
Genomic Islands: an overview of current software and future improvements.
Volume 13, Number 2, 2016
- Sophia Santos
, Isabel Rocha
:
Estimation of biomass composition from genomic and transcriptomic information. - Fiorella Cravero
, María Jimena Martínez
, Gustavo Esteban Vazquez
, Mónica Fátima Díaz
, Ignacio Ponzoni
:
Feature Learning applied to the Estimation of Tensile Strength at Break in Polymeric Material Design.
Volume 13, Number 3, 2016
- Falk Schreiber, Gary D. Bader
, Padraig Gleeson
, Martin Golebiewski, Michael Hucka
, Nicolas Le Novère, Chris J. Myers, David P. Nickerson
, Björn Sommer, Dagmar Waltemath:
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2016. - Michael Hucka
, Lucian P. Smith
:
SBML Level 3 package: Groups, Version 1 Release 1. - Jacob Beal, Robert Sidney Cox III, Raik Grünberg
, James Alastair McLaughlin, Tramy Nguyen, Bryan Bartley, Michael Bissell, Kiri Choi
, Kevin Clancy, Chris Macklin, Curtis Madsen, Goksel Misirli
, Ernst Oberortner, Matthew R. Pocock, Nicholas Roehner, Meher Samineni, Michael Zhang, Zhen Zhang, Zach Zundel, John H. Gennari
, Chris J. Myers, Herbert M. Sauro, Anil Wipat
:
Synthetic Biology Open Language (SBOL) Version 2.1.0.
Volume 13, Number 4, 2016
- Vladimir N. Babenko
, Anatoly O. Bragin, Anastasia M. Spitsina, Irina V. Chadaeva
, Elvira R. Galieva, Galina V. Orlova, Irina V. Medvedeva
, Yuriy L. Orlov
:
Analysis of differential gene expression by RNA-seq data in brain areas of laboratory animals. - Canan Has
, Sergey A. Lashin
, Alexey V. Kochetov, Jens Allmer
:
PGMiner reloaded, fully automated proteogenomic annotation tool linking genomes to proteomes. - Diogo Almeida, Ida Skov, Jesper Lund, Afsaneh Mohammadnejad
, Artur Silva
, Fabio Vandin, Qihua Tan
, Jan Baumbach
, Richard Röttger
:
Jllumina - A comprehensive Java-based API for statistical Illumina Infinium HumanMethylation450 and MethylationEPIC data processing. - Alexander Mulik, Valery Novochadov, Alexander Bondarev, Sofya Lipnitskaya, Irina Ulesikova, Yulia Shatyr:
New insights into genotype-phenotype correlation in individuals with different level of general non-specific reactivity of an organism. - Benedikt G. Brink
, Annica Seidel, Nils Kleinbölting, Tim W. Nattkemper
, Stefan P. Albaum:
Omics Fusion - A Platform for Integrative Analysis of Omics Data. - Qilin Li
, Yincong Zhou, Yingmin Jiao, Zhao Zhang, Lin Bai, Li Tong, Xiong Yang, Björn Sommer, Ralf Hofestädt, Ming Chen
:
DaTo: an atlas of biological databases and tools. - Gökhan Kovanci, Mehmood Ghaffar, Björn Sommer:
Web-based hybrid-dimensional Visualization and Exploration of Cytological Localization Scenarios.
Volume 13, Number 5, 2016
- Jens Allmer, Malik Yousef:
Editorial: Computational miRNomics. - Muserref Duygu Saçar Demirci
, Mustafa Toprak, Jens Allmer:
A Machine Learning Approach for MicroRNA Precursor Prediction in Retro-transcribing Virus Genomes. - Malik Yousef, Waleed Khalifa, Loai AbdAllah:
Ensemble Clustering Classification compete SVM and One-Class classifiers applied on plant microRNAs Data. - Aneesh Kotipalli, Ravikumar Gutti
, Chanchal K. Mitra:
Dynamics of miRNA biogenesis and nuclear transport. - Jing Zhang, Hanane Hadj-Moussa
, Kenneth B. Storey:
Current progress of high-throughput microRNA differential expression analysis and random forest gene selection for model and non-model systems: an R implementation. - Matthew Kanke, Jeanette Baran-Gale, Jonathan Villanueva, Praveen Sethupathy:
miRquant 2.0: an Expanded Tool for Accurate Annotation and Quantification of MicroRNAs and their isomiRs from Small RNA-Sequencing Data. - Ebru Diler, Turgay Unver
, Gökhan Karakülah
:
Differential Expression of Hyperhydricity Responsive Peach miRNAs.
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