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ORCID10. RECOMB 2006: Venice, Italy
- Alberto Apostolico, Concettina Guerra, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman:
Research in Computational Molecular Biology, 10th Annual International Conference, RECOMB 2006, Venice, Italy, April 2-5, 2006, Proceedings. Lecture Notes in Computer Science 3909, Springer 2006, ISBN 3-540-33295-2 - Balaji S. Srinivasan, Antal F. Novak, Jason Flannick, Serafim Batzoglou, Harley H. McAdams:
Integrated Protein Interaction Networks for 11 Microbes. 1-14 - Xiaoduan Ye, Alan M. Friedman, Chris Bailey-Kellogg:
Hypergraph Model of Multi-residue Interactions in Proteins: Sequentially-Constrained Partitioning Algorithms for Optimization of Site-Directed Protein Recombination. 15-29 - Benny Chor, Tamir Tuller:
Biological Networks: Comparison, Conservation, and Evolutionary Trees. 30-44 - Mehmet Koyutürk, Ananth Grama, Wojciech Szpankowski:
Assessing Significance of Connectivity and Conservation in Protein Interaction Networks. 45-59 - Ling Wang, Marco Ramoni, Paola Sebastiani:
Clustering Short Gene Expression Profiles. 60-68 - Naftali Kaminski
, Ziv Bar-Joseph:
A Patient-Gene Model for Temporal Expression Profiles in Clinical Studies. 69-82 - Anne-Claude Gavin:
Global Interaction Networks Probed by Mass Spectrometry. 83-83 - David Sankoff:
Statistical Evaluation of Genome Rearrangement. 84-84 - Steffen Grossmann, Sebastian Bauer, Peter N. Robinson, Martin Vingron:
An Improved Statistic for Detecting Over-Represented Gene Ontology Annotations in Gene Sets. 85-98 - Akshay Vashist, Casimir A. Kulikowski, Ilya B. Muchnik:
Protein Function Annotation Based on Ortholog Clusters Extracted from Incomplete Genomes Using Combinatorial Optimization. 99-113 - Jim C. Huang, Quaid Morris, Brendan J. Frey:
Detecting MicroRNA Targets by Linking Sequence, MicroRNA and Gene Expression Data. 114-129 - Can Alkan, Emre Karakoç, Süleyman Cenk Sahinalp, Peter J. Unrau, H. Alexander Ebhardt, Kaizhong Zhang, Jeremy Buhler:
RNA Secondary Structure Prediction Via Energy Density Minimization. 130-142 - Banu Dost, Buhm Han, Shaojie Zhang, Vineet Bafna:
Structural Alignment of Pseudoknotted RNA. 143-158 - Michael S. Waterman:
Stan Ulam and Computational Biology. 159-159 - Chuong B. Do, Samuel S. Gross, Serafim Batzoglou:
CONTRAlign: Discriminative Training for Protein Sequence Alignment. 160-174 - Michael Cameron, Yaniv Bernstein, Hugh E. Williams:
Clustering Near-Identical Sequences for Fast Homology Search. 175-189 - Adam C. Siepel, Katherine S. Pollard, David Haussler:
New Methods for Detecting Lineage-Specific Selection. 190-205 - Miklós Csürös, István Miklós:
A Probabilistic Model for Gene Content Evolution with Duplication, Loss, and Horizontal Transfer. 206-220 - Nicholas D. Pattengale, Bernard M. E. Moret:
A Sublinear-Time Randomized Approximation Scheme for the Robinson-Foulds Metric. 221-230 - Yun S. Song, Zhihong Ding, Dan Gusfield, Charles H. Langley, Yufeng Wu:
Algorithms to Distinguish the Role of Gene-Conversion from Single-Crossover Recombination in the Derivation of SNP Sequences in Populations. 231-245 - Ajay K. Royyuru, Gabriela Alexe, Daniel E. Platt, Ravi Vijaya Satya, Laxmi Parida, Saharon Rosset, Gyan Bhanot:
Inferring Common Origins from mtDNA. 246-247 - Stanislav Angelov, Boulos Harb, Sampath Kannan, Sanjeev Khanna, Junhyong Kim:
Efficient Enumeration of Phylogenetically Informative Substrings. 248-264 - Sagi Snir, Lior Pachter:
Phylogenetic Profiling of Insertions and Deletions in Vertebrate Genomes. 265-280 - Constantinos Daskalakis, Cameron Hill, Alexander Jaffe, Radu Mihaescu, Elchanan Mossel, Satish Rao:
Maximal Accurate Forests from Distance Matrices. 281-295 - David Heckerman, Carl Myers Kadie, Jennifer Listgarten:
Leveraging Information Across HLA Alleles/Supertypes Improves Epitope Prediction. 296-308 - Sauro Menchetti, Andrea Passerini, Paolo Frasconi, Claudia Andreini, Antonio Rosato:
Improving Prediction of Zinc Binding Sites by Modeling the Linkage Between Residues Close in Sequence. 309-320 - Teresa M. Przytycka:
An Important Connection Between Network Motifs and Parsimony Models. 321-335 - David Haussler:
Ultraconserved Elements, Living Fossil Transposons, and Rapid Bursts of Change: Reconstructing the Uneven Evolutionary History of the Human Genome. 336-337 - Stefanie Scheid, Rainer Spang:
Permutation Filtering: A Novel Concept for Significance Analysis of Large-Scale Genomic Data. 338-347 - Kai Wang, Ilya Nemenman, Nilanjana Banerjee, Adam A. Margolin, Andrea Califano:
Genome-Wide Discovery of Modulators of Transcriptional Interactions in Human B Lymphocytes. 348-362 - Nuno Bandeira, Dekel Tsur, Ari Frank, Pavel A. Pevzner:
A New Approach to Protein Identification. 363-378 - Chakra Chennubhotla, Ivet Bahar:
Markov Methods for Hierarchical Coarse-Graining of Large Protein Dynamics. 379-393 - Shawna L. Thomas, Xinyu Tang, Lydia Tapia, Nancy M. Amato:
Simulating Protein Motions with Rigidity Analysis. 394-409 - Tsung-Han Chiang, Mehmet Serkan Apaydin, Douglas L. Brutlag, David Hsu, Jean-Claude Latombe:
Predicting Experimental Quantities in Protein Folding Kinetics Using Stochastic Roadmap Simulation. 410-424 - Carl Zimmer:
An Outsider's View of the Genome. 425 - Philipp W. Messer, Ralf Bundschuh, Martin Vingron, Peter F. Arndt:
Alignment Statistics for Long-Range Correlated Genomic Sequences. 426-440 - John D. Kececioglu, Eagu Kim:
Simple and Fast Inverse Alignment. 441-455 - Roman A. Zubarev:
Revealing the Proteome Complexity by Mass Spectrometry. 456-457 - Samuel A. Andersson, Jens Lagergren:
Motif Yggdrasil: Sampling from a Tree Mixture Model. 458-472 - Ydo Wexler, Chaya Ben-Zaken Zilberstein, Michal Ziv-Ukelson:
A Study of Accessible Motifs and RNA Folding Complexity. 473-487 - Jinbo Xu, Feng Jiao, Bonnie Berger:
A Parameterized Algorithm for Protein Structure Alignment. 488-499 - Brian Y. Chen, Viacheslav Fofanov, Drew H. Bryant, Bradley D. Dodson, David M. Kristensen, Andreas Martin Lisewski, Marek Kimmel, Olivier Lichtarge, Lydia E. Kavraki:
Geometric Sieving: Automated Distributed Optimization of 3D Motifs for Protein Function Prediction. 500-515 - Wei Xie, Nikolaos V. Sahinidis:
A Branch-and-Reduce Algorithm for the Contact Map Overlap Problem. 516-529 - Ivelin Georgiev, Ryan H. Lilien, Bruce Randall Donald:
A Novel Minimized Dead-End Elimination Criterion and Its Application to Protein Redesign in a Hybrid Scoring and Search Algorithm for Computing Partition Functions over Molecular Ensembles. 530-545 - Sarah J. Aerni, Eleazar Eskin:
10 Years of the International Conference on Research in Computational Molecular Biology (RECOMB). 546-562 - Martin Bader, Enno Ohlebusch:
Sorting by Weighted Reversals, Transpositions, and Inverted Transpositions. 563-577 - Zheng Fu, Xin Chen, Vladimir Vacic, Peng Nan, Yang Zhong, Tao Jiang:
A Parsimony Approach to Genome-Wide Ortholog Assignment. 578-594 - Jeremy Darot, Chen-Hsiang Yeang, David Haussler:
Detecting the Dependent Evolution of Biosequences. 595-609
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