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Publication search results
found 203 matches
- 2024
- Sheikh Hasib Ahmed, Dibyendu Brinto Bose, Rafi Khandoker, M. Saifur Rahman:
StackDPP: a stacking ensemble based DNA-binding protein prediction model. BMC Bioinform. 25(1): 111 (2024) - Seungjun Ahn, Somnath Datta:
Differential network connectivity analysis for microbiome data adjusted for clinical covariates using jackknife pseudo-values. BMC Bioinform. 25(1): 117 (2024) - Shahid Akbar, Ali Raza, Quan Zou:
Deepstacked-AVPs: predicting antiviral peptides using tri-segment evolutionary profile and word embedding based multi-perspective features with deep stacking model. BMC Bioinform. 25(1): 102 (2024) - Simone Alessandri, Maria L. Ratto, Sergio Rabellino, Gabriele Piacenti, Sandro Gepiro Contaldo, Simone Pernice, Marco Beccuti, Raffaele A. Calogero, Luca Alessandrì:
CREDO: a friendly Customizable, REproducible, DOcker file generator for bioinformatics applications. BMC Bioinform. 25(1): 110 (2024) - Ali Hakem Alsaeedi, Haider Hameed R. Al-Mahmood, Zainab Fahad Alnaseri, Mohammad R. Aziz, Dhiah Al-Shammary, Ayman Ibaida, Khandakar Ahmed:
Fractal feature selection model for enhancing high-dimensional biological problems. BMC Bioinform. 25(1): 12 (2024) - Edwin Alvarez-Mamani, Reinhard Dechant, César Armando Beltrán Castañón, Alfredo J. Ibáñez:
Graph embedding on mass spectrometry- and sequencing-based biomedical data. BMC Bioinform. 25(1): 1 (2024) - Muhammad Arif, Ge Fang, Ali Ghulam, Saleh Musleh, Tanvir Alam:
DPI_CDF: druggable protein identifier using cascade deep forest. BMC Bioinform. 25(1): 145 (2024) - Robert Ebo Armah-Sekum, Sándor Szedmák, Juho Rousu:
Protein function prediction through multi-view multi-label latent tensor reconstruction. BMC Bioinform. 25(1): 174 (2024) - Akram Ashyani, Yu-Heng Wu, Huan-Wei Hsu, Torbjörn E. M. Nordling:
Ideal adaptive control in biological systems: an analysis of $\mathbb {P}$-invariance and dynamical compensation properties. BMC Bioinform. 25(1): 95 (2024) - Louis J. M. Aslett, Ryan R. Christ:
kalis: a modern implementation of the Li & Stephens model for local ancestry inference in R. BMC Bioinform. 25(1): 86 (2024) - Anthony Baptista, Galadriel Brière, Anaïs Baudot:
Random walk with restart on multilayer networks: from node prioritisation to supervised link prediction and beyond. BMC Bioinform. 25(1): 70 (2024) - Georgios Bartzis, Carel F. W. Peeters, Wilco Ligterink, Fred A. van Eeuwijk:
A guided network estimation approach using multi-omic information. BMC Bioinform. 25(1): 202 (2024) - Tim U. H. Baumeister, Eivind Aadland, Roger G. Linington, Olav M. Kvalheim:
Multivariate pattern analysis: a method and software to reveal, quantify, and visualize predictive association patterns in multicollinear data. BMC Bioinform. 25(1): 51 (2024) - Jorge Beltrán, Lisandra Herrera Belén, Fernanda Parraguez Contreras, Jorge G. Farias, Jorge Machuca-Sepúlveda, Stefania Short:
MultiToxPred 1.0: a novel comprehensive tool for predicting 27 classes of protein toxins using an ensemble machine learning approach. BMC Bioinform. 25(1): 148 (2024) - Jasper van Bemmelen, Davida S. Smyth, Jasmijn A. Baaijens:
Amplidiff: an optimized amplicon sequencing approach to estimating lineage abundances in viral metagenomes. BMC Bioinform. 25(1): 126 (2024) - Adam Bessa-Silva:
Fasta2Structure: a user-friendly tool for converting multiple aligned FASTA files to STRUCTURE format. BMC Bioinform. 25(1): 73 (2024) - Hector Roux de Bézieux, Kelly Street, Stephan Fischer, Koen Van den Berge, Rebecca Chance, Davide Risso, Jesse A. Gillis, John Ngai, Elizabeth Purdom, Sandrine Dudoit:
Improving replicability in single-cell RNA-Seq cell type discovery with Dune. BMC Bioinform. 25(1): 198 (2024) - Dharmesh D. Bhuva, Chin Wee Tan, Ning Liu, Holly J. Whitfield, Nicholas Papachristos, Samuel C. Lee, Malvika Kharbanda, Ahmed Mohamed, Melissa J. Davis:
vissE: a versatile tool to identify and visualise higher-order molecular phenotypes from functional enrichment analysis. BMC Bioinform. 25(1): 64 (2024) - Patrick Blumenkamp, Max Pfister, Sonja Diedrich, Karina Brinkrolf, Sebastian Jaenicke, Alexander Goesmann:
Curare and GenExVis: a versatile toolkit for analyzing and visualizing RNA-Seq data. BMC Bioinform. 25(1): 138 (2024) - Adusei Bofa, Temesgen Zewotir:
Optimizing spatio-temporal correlation structures for modeling food security in Africa: a simulation-based investigation. BMC Bioinform. 25(1): 168 (2024) - Audrey E. Bollas, Andrei Rajkovic, Defne Ceyhan, Jeffrey B. Gaither, Elaine R. Mardis, Peter White:
SNVstory: inferring genetic ancestry from genome sequencing data. BMC Bioinform. 25(1): 76 (2024) - Mariella Bonomo, Simona E. Rombo:
Neighborhood based computational approaches for the prediction of lncRNA-disease associations. BMC Bioinform. 25(1): 187 (2024) - Aaron Boussina, Lennart Langouche, Augustine C. Obirieze, Mridu Sinha, Hannah Mack, William Leineweber, April Joy C. Aralar, David T. Pride, Todd P. Coleman, Stephanie I Fraley:
Machine learning based DNA melt curve profiling enables automated novel genotype detection. BMC Bioinform. 25(1): 185 (2024) - Clayton Carter, Aaron Saporito, Stephen M. Douglass:
MetageneCluster: a Python package for filtering conflicting signal trends in metagene plots. BMC Bioinform. 25(1): 21 (2024) - Eduardo N. Castanho, João Lobo, Rui Henriques, Sara C. Madeira:
Correction: G-bic: generating synthetic benchmarks for biclustering. BMC Bioinform. 25(1): 16 (2024) - Yunus Emre Cebeci, Rumeysa Aslihan Erturk, Mehmet Arif Ergun, Mehmet Baysan:
Improving somatic exome sequencing performance by biological replicates. BMC Bioinform. 25(1): 124 (2024) - Hua Chai, Siyin Lin, Junqi Lin, Minfan He, Yuedong Yang, Yongzhong OuYang, Huiying Zhao:
An uncertainty-based interpretable deep learning framework for predicting breast cancer outcome. BMC Bioinform. 25(1): 88 (2024) - Donny Chan, Graham L. Cromar, Billy Taj, John Parkinson:
Cell4D: a general purpose spatial stochastic simulator for cellular pathways. BMC Bioinform. 25(1): 121 (2024) - Haiyang Chang, Daniel A. Ashlock, Steffen P. Graether, Stefan M. Keller:
Anchor Clustering for million-scale immune repertoire sequencing data. BMC Bioinform. 25(1): 42 (2024) - Xue-Qin Chen, Jie Ma, Di Xu, Zuo-Lin Xiang:
Correction: Comprehensive analysis of KLF2 as a prognostic biomarker associated with fibrosis and immune infiltration in advanced hepatocellular carcinoma. BMC Bioinform. 25(1): 7 (2024)
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