- Yahui Cao, Tao Zhang, Xin Zhao, Xue Jia, Bingzhi Li:
MooSeeker: A Metabolic Pathway Design Tool Based on Multi-Objective Optimization Algorithm. IEEE ACM Trans. Comput. Biol. Bioinform. 20(6): 3609-3622 (2023) - Filippo Castiglione, Christine Nardini, Elia Onofri, Marco Pedicini, Paolo Tieri:
Explainable Drug Repurposing Approach From Biased Random Walks. IEEE ACM Trans. Comput. Biol. Bioinform. 20(2): 1009-1019 (2023) - Zhaoying Chai, Han Jin, Shenghui Shi, Siyan Zhan, Lin Zhuo, Yu Yang, Qi Lian:
Noise Reduction Learning Based on XLNet-CRF for Biomedical Named Entity Recognition. IEEE ACM Trans. Comput. Biol. Bioinform. 20(1): 595-605 (2023) - Shutao Chen, Lin Zhang, Xiangzhi Chen, Hui Liu:
FGFICA: Independent Component Analysis of Fusion Genomic Features for Mining Epi-Transcriptome Profiling Data. IEEE ACM Trans. Comput. Biol. Bioinform. 20(3): 1842-1853 (2023) - Peng Chen, Jian Wang, Hongfei Lin, Yijia Zhang, Zhihao Yang:
Knowledge Adaptive Multi-Way Matching Network for Biomedical Named Entity Recognition via Machine Reading Comprehension. IEEE ACM Trans. Comput. Biol. Bioinform. 20(3): 2101-2111 (2023) - Nan Chen, Man Guo, Yongchao Li, Xiping Hu, Zhijun Yao, Bin Hu:
Estimation of Discriminative Multimodal Brain Network Connectivity Using Message-Passing-Based Nonlinear Network Fusion. IEEE ACM Trans. Comput. Biol. Bioinform. 20(4): 2398-2406 (2023) - Jiamin Chen, Jianliang Gao, Tengfei Lyu, Oloulade Babatounde Moctard, Xiaohua Hu:
AutoMSR: Auto Molecular Structure Representation Learning for Multi-label Metabolic Pathway Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 20(6): 3430-3439 (2023) - Jiazhou Chen, Guoqiang Han, Aodan Xu, Tatsuya Akutsu, Hongmin Cai:
Identifying miRNA-Gene Common and Specific Regulatory Modules for Cancer Subtyping by a High-Order Graph Matching Model. IEEE ACM Trans. Comput. Biol. Bioinform. 20(1): 421-431 (2023) - Zihao Chen, Nan Liu, Yang Huang, Xiaoping Min, Xiangxiang Zeng, Shengxiang Ge, Jun Zhang, Ning-Shao Xia:
PointDE: Protein Docking Evaluation Using 3D Point Cloud Neural Network. IEEE ACM Trans. Comput. Biol. Bioinform. 20(5): 3128-3138 (2023) - Hegang Chen, Yuyin Lu, Yuedong Yang, Yanghui Rao:
A Drug Combination Prediction Framework Based on Graph Convolutional Network and Heterogeneous Information. IEEE ACM Trans. Comput. Biol. Bioinform. 20(3): 1917-1925 (2023) - Shouzhi Chen, Yanhong Liao, Jianping Zhao, Yannan Bin, Chun-Hou Zheng:
PACVP: Prediction of Anti-Coronavirus Peptides Using a Stacking Learning Strategy With Effective Feature Representation. IEEE ACM Trans. Comput. Biol. Bioinform. 20(5): 3106-3116 (2023) - Jiazhou Chen, Wentao Rong, Guihua Tao, Hongmin Cai:
Similarity Fusion via Exploiting High Order Proximity for Cancer Subtyping. IEEE ACM Trans. Comput. Biol. Bioinform. 20(1): 658-667 (2023) - Qi-Qi Chen, Zhao-Hui Sun, Chuan-Feng Wei, Edmond Qi Wu, Dong Ming:
Semi-Supervised 3D Medical Image Segmentation Based on Dual-Task Consistent Joint Learning and Task-Level Regularization. IEEE ACM Trans. Comput. Biol. Bioinform. 20(4): 2457-2467 (2023) - Peng Chen, Huimin Shen, Youzhi Zhang, Bing Wang, Pengying Gu:
SGNet: Sequence-Based Convolution and Ligand Graph Network for Protein Binding Affinity Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 20(5): 3257-3266 (2023) - Cheng-Bang Chen, Yujie Wang, Xuanya Fu, Hui Yang:
Recurrence Network Analysis of Histopathological Images for the Detection of Invasive Ductal Carcinoma in Breast Cancer. IEEE ACM Trans. Comput. Biol. Bioinform. 20(5): 3234-3244 (2023) - Taoning Chen, Tingfang Wu, Deng Pan, Jinxing Xie, Jin Zhi, Xuejiao Wang, Lijun Quan, Qiang Lyu:
TransRNAm: Identifying Twelve Types of RNA Modifications by an Interpretable Multi-Label Deep Learning Model Based on Transformer. IEEE ACM Trans. Comput. Biol. Bioinform. 20(6): 3623-3634 (2023) - Jiatao Chen, Liang Zhang, Ke Cheng, Bo Jin, Xinjiang Lu, Chao Che:
Predicting Drug-Target Interaction Via Self-Supervised Learning. IEEE ACM Trans. Comput. Biol. Bioinform. 20(5): 2781-2789 (2023) - Cheng Chen, Yuguo Zha, Daming Zhu, Kang Ning, Xuefeng Cui:
ContactLib-ATT: A Structure-Based Search Engine for Homologous Proteins. IEEE ACM Trans. Comput. Biol. Bioinform. 20(6): 3421-3429 (2023) - Xiaoqing Cheng, Chang Yan, Hao Jiang, Yushan Qiu:
scHOIS: Determining Cell Heterogeneity Through Hierarchical Clustering Based on Optimal Imputation Strategy. IEEE ACM Trans. Comput. Biol. Bioinform. 20(2): 1431-1444 (2023) - Enhao Cheng, Jun Zhao, Hong Wang, Shuguang Song, Shuxian Xiong, Yanshen Sun:
Dual Network Contrastive Learning for Predicting Microbe-Disease Associations. IEEE ACM Trans. Comput. Biol. Bioinform. 20(6): 3469-3481 (2023) - He-Ming Chu, Xiang-Zhen Kong, Jin-Xing Liu, Chun-Hou Zheng, Han Zhang:
A New Binary Biclustering Algorithm Based on Weight Adjacency Difference Matrix for Analyzing Gene Expression Data. IEEE ACM Trans. Comput. Biol. Bioinform. 20(5): 2802-2809 (2023) - Thang Chu, Thuy Trang Nguyen, Bui Duong Hai, Quang Huy Nguyen, Tuan Nguyen:
Graph Transformer for Drug Response Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 20(2): 1065-1072 (2023) - Evgenia Chunikhina, Paul Logan, Yevgeniy Kovchegov, Anatoly Yambartsev, Debashis Mondal, Andrey Morgun:
The C-SHIFT Algorithm for Normalizing Covariances. IEEE ACM Trans. Comput. Biol. Bioinform. 20(1): 720-730 (2023) - Qi Dang, Yong Liang, Dong Ouyang, Rui Miao, Caijin Ling, Xiao-Ying Liu, Shengli Xie:
Improved Computational Drug-Repositioning by Self-Paced Non-Negative Matrix Tri-Factorization. IEEE ACM Trans. Comput. Biol. Bioinform. 20(3): 1953-1962 (2023) - Pradeep Kumar Das, Biswajeet Sahoo, Sukadev Meher:
An Efficient Detection and Classification of Acute Leukemia Using Transfer Learning and Orthogonal Softmax Layer-Based Model. IEEE ACM Trans. Comput. Biol. Bioinform. 20(3): 1817-1828 (2023) - Pranab Das, Yogita Thakran, S. R. Ngamwal Anal, Vipin Pal, Anju Yadav:
BRMCF: Binary Relevance and MLSMOTE Based Computational Framework to Predict Drug Functions From Chemical and Biological Properties of Drugs. IEEE ACM Trans. Comput. Biol. Bioinform. 20(3): 1761-1773 (2023) - Richa Dhanuka, Jyoti Prakash Singh, Anushree Tripathi:
A Comprehensive Survey of Deep Learning Techniques in Protein Function Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 20(3): 2291-2301 (2023) - Fayaz Ali Dharejo, Muhammad Zawish, Farah Deeba, Yuanchun Zhou, Kapal Dev, Sunder Ali Khowaja, Nawab Muhammad Faseeh Qureshi:
Multimodal-Boost: Multimodal Medical Image Super-Resolution Using Multi-Attention Network With Wavelet Transform. IEEE ACM Trans. Comput. Biol. Bioinform. 20(4): 2420-2433 (2023) - Yijie Ding, Wenying He, Jijun Tang, Quan Zou, Fei Guo:
Laplacian Regularized Sparse Representation Based Classifier for Identifying DNA N4-Methylcytosine Sites via $L_{2,1/2}$L2,1/2-Matrix Norm. IEEE ACM Trans. Comput. Biol. Bioinform. 20(1): 500-511 (2023) - Yulian Ding, Xiujuan Lei, Bo Liao, Fang-Xiang Wu:
Biomarker Identification via a Factorization Machine-Based Neural Network With Binary Pairwise Encoding. IEEE ACM Trans. Comput. Biol. Bioinform. 20(3): 2136-2146 (2023)