- Ekaterina Khrameeva, Geoffrey Fudenberg, Mikhail S. Gelfand, Leonid A. Mirny:
History of chromosome rearrangements reflects the spatial organization of yeast chromosomes. J. Bioinform. Comput. Biol. 14(2): 1641002:1-1641002:12 (2016) - Weerayuth Kittichotirat, Worrawat Engchuan, Wanwipa Vongsangnak, Asawin Meechai:
Preface to selected papers from the 6th International Conference on Computational Systems-Biology and Bioinformatics (CSBio2015). J. Bioinform. Comput. Biol. 14(1): 1602001:1-1602001:2 (2016) - Kento Kodama, Hiroto Saigo:
KDSNP: A kernel-based approach to detecting high-order SNP interactions. J. Bioinform. Comput. Biol. 14(5): 1644003:1-1644003:16 (2016) - Ruchishree Konhar, Manish Debnath, Jean Valrie Marbaniang, Devendra Kumar Biswal, Pramod Tandon:
Age estimation for the genus Cymbidium (Orchidaceae: Epidendroideae) with implementation of fossil data calibration using molecular markers (ITS2 & matK) and phylogeographic inference from ancestral area reconstruction. J. Bioinform. Comput. Biol. 14(6): 1660001:1-1660001:17 (2016) - Jin Li, Chengzhen Xu, Lei Wang, Hong Liang, Weixing Feng, Zhongxi Cai, Ying Wang, Wang Cong, Yunlong Liu:
PSRna: Prediction of small RNA secondary structures based on reverse complementary folding method. J. Bioinform. Comput. Biol. 14(4): 1643001:1-1643001:18 (2016) - Bingxin Lu, Hon Wai Leong:
GI-SVM: A sensitive method for predicting genomic islands based on unannotated sequence of a single genome. J. Bioinform. Comput. Biol. 14(1): 1640003:1-1640003:16 (2016) - Naim Al Mahi, Munni Begum:
A two-step integrated approach to detect differentially expressed genes in RNA-Seq data. J. Bioinform. Comput. Biol. 14(6): 1650034:1-1650034:18 (2016) - Sudip Mandal, Abhinandan Khan, Goutam Saha, Rajat Kumar Pal:
Reverse engineering of gene regulatory networks based on S-systems and Bat algorithm. J. Bioinform. Comput. Biol. 14(3): 1650010:1-1650010:22 (2016) - Darlington S. Mapiye, Alan Christoffels, Junaid Gamieldien:
Identification of phenotype-relevant differentially expressed genes in breast cancer demonstrates enhanced quantile discretization protocol's utility in multi-platform microarray data integration. J. Bioinform. Comput. Biol. 14(5): 1650022:1-1650022:18 (2016) - Mani Mehraei, Rza Bashirov, Sükrü Tüzmen:
Target-based drug discovery for β-globin disorders: drug target prediction using quantitative modeling with hybrid functional Petri nets. J. Bioinform. Comput. Biol. 14(5): 1650026:1-1650026:18 (2016) - Jucheol Moon, Harris T. Lin, Oliver Eulenstein:
Consensus properties and their large-scale applications for the gene duplication problem. J. Bioinform. Comput. Biol. 14(3): 1642005:1-1642005:17 (2016) - Christopher Ochs, Yehoshua Perl, Michael Halper, James Geller, Jane Lomax:
Quality assurance of the gene ontology using abstraction networks. J. Bioinform. Comput. Biol. 14(3): 1642001:1-1642001:22 (2016) - Sohee Oh, Ik-Soo Huh, Seung Yeoun Lee, Taesung Park:
Analysis of multiple related phenotypes in genome-wide association studies. J. Bioinform. Comput. Biol. 14(5): 1644005:1-1644005:23 (2016) - Jinwoo Park, Benjamin Hur, SungMin Rhee, Sangsoo Lim, Min-Su Kim, Kwangsoo Kim, Wonshik Han, Sun Kim:
Information theoretic sub-network mining characterizes breast cancer subtypes in terms of cancer core mechanisms. J. Bioinform. Comput. Biol. 14(5): 1644002:1-1644002:23 (2016) - Ana Brândusa Pavel, Cristian Ioan Vasile:
Identifying cancer type specific oncogenes and tumor suppressors using limited size data. J. Bioinform. Comput. Biol. 14(6): 1650031:1-1650031:16 (2016) - Nolen Joy Perualila-Tan, Ziv Shkedy, Willem Talloen, Hinrich W. H. Göhlmann, Marijke Van Moerbeke, Adetayo Kasim:
Weighted similarity-based clustering of chemical structures and bioactivity data in early drug discovery. J. Bioinform. Comput. Biol. 14(4): 1650018:1-1650018:22 (2016) - Artem Petrov, Vladimir Arzhanik, Gennady Makarov, Oleg V. Koliasnikov:
A novel Arg H52/Tyr H33 conservative motif in antibodies: A correlation between sequence of antibodies and antigen binding. J. Bioinform. Comput. Biol. 14(4): 1650019:1-1650019:17 (2016) - Cong Pian, Jin Zhang, Yuan-yuan Chen, Zhi Chen, Qin Li, Qiang Li, Liang-Yun Zhang:
OP-Triplet-ELM: Identification of real and pseudo microRNA precursors using extreme learning machine with optimal features. J. Bioinform. Comput. Biol. 14(1): 1650006:1-1650006:14 (2016) - Monamorn Precharattana:
Stochastic modeling for dynamics of HIV-1 infection using cellular automata: A review. J. Bioinform. Comput. Biol. 14(1): 1630001:1-1630001:17 (2016) - Fahad Saeed, Nurit Haspel, Hisham Al-Mubaid:
Introduction to the selected papers from the 7th International Conference on Bioinformatics and Computational Biology (BICoB 2015). J. Bioinform. Comput. Biol. 14(3): 1602002:1-1602002:3 (2016) - Muhammad Sardaraz, Muhammad Tahir, Ataul Aziz Ikram:
Advances in high throughput DNA sequence data compression. J. Bioinform. Comput. Biol. 14(3): 1630002:1-1630002:18 (2016) - Igor V. Sharakhov, Gleb N. Artemov, Maria V. Sharakhova:
Chromosome evolution in malaria mosquitoes inferred from physically mapped genome assemblies. J. Bioinform. Comput. Biol. 14(2): 1630003:1-1630003:17 (2016) - Fangzhou Shen, Jian Li, Ying Zhu, Zhuo Wang:
Systematic investigation of metabolic reprogramming in different cancers based on tissue-specific metabolic models. J. Bioinform. Comput. Biol. 14(5): 1644001:1-1644001:18 (2016) - Nikita G. Shiliaev, Olga M. Selivanova, Oxana V. Galzitskaya:
Search for conserved amino acid residues of the α-crystallin proteins of vertebrates. J. Bioinform. Comput. Biol. 14(2): 1641004:1-1641004:16 (2016) - Alexander V. Spirov, Ekaterina M. Myasnikova, David M. Holloway:
Sequential construction of a model for modular gene expression control, applied to spatial patterning of the Drosophila gene hunchback. J. Bioinform. Comput. Biol. 14(2): 1641005:1-1641005:24 (2016) - Dmitry A. Suplatov, Nina Popova, Sergey A. Zhumatiy, Vladimir V. Voevodin, Vytas K. Svedas:
Parallel workflow manager for non-parallel bioinformatic applications to solve large-scale biological problems on a supercomputer. J. Bioinform. Comput. Biol. 14(2): 1641008:1-1641008:15 (2016) - Chandra Verma, Peter J. Bond:
Introductory note for JBCB special issue. J. Bioinform. Comput. Biol. 14(6): 1602005:1-1602005:2 (2016) - Oxana A. Volkova, Yury V. Kondrakhin, Ivan S. Yevshin, Tagir F. Valeev, Ruslan N. Sharipov:
Assessment of translational importance of mammalian mRNA sequence features based on Ribo-Seq and mRNA-Seq data. J. Bioinform. Comput. Biol. 14(2): 1641006:1-1641006:15 (2016) - Xiaoling Wang, Jingshi Han, Kui Li, Guoqing Wang, Mudong Hao:
Multi-layer composite mechanical modeling for the inhomogeneous biofilm mechanical behavior. J. Bioinform. Comput. Biol. 14(4): 1650014:1-1650014:14 (2016) - Wenlei Wu, Weibin Sun, Tingzhe Sun:
Modeling the heterogeneity of p53 dynamics in DNA damage response. J. Bioinform. Comput. Biol. 14(1): 1650001:1-1650001:18 (2016)