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journals/bioinformatics/BrezovskyTSSMSF22 share record
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Jan Brezovsky , Aravind Selvaram Thirunavukarasu , Bartlomiej Surpeta , Carlos Eduardo Sequeiros-Borja , Nishita Mandal , Dheeraj Kumar Sarkar , Cedrix Jurgal Dongmo Foumthuim , Nikhil Agrawal : TransportTools: a library for high-throughput analyses of internal voids in biomolecules and ligand transport through them. Bioinform. 38 (6 ) : 1752-1753 (2022 )export record
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journals/bioinformatics/BuchnerML22 share record
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Dominik Buchner , Till-Hendrik Macher , Florian Leese : APSCALE: advanced pipeline for simple yet comprehensive analyses of DNA metabarcoding data. Bioinform. 38 (20 ) : 4817-4819 (2022 )export record
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journals/bioinformatics/BueschlDVSFWZ22 share record
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Christoph Bueschl , Maria Doppler , Elisabeth Varga , Bernhard Seidl , Mira Flasch , Benedikt Warth , Jürgen Zanghellini : PeakBot: machine-learning-based chromatographic peak picking. Bioinform. 38 (13 ) : 3422-3428 (2022 )export record
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journals/bioinformatics/BuitronCGHPFP22 share record
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Martin Gonzalez Buitron , Ronaldo Romario Tunque Cahui , Emilio Garcia-Rios , Layla Hirsh , Gustavo D. Parisi , María Silvina Fornasari , Nicolas Palopoli : CoDNaS-RNA: a database of conformational diversity in the native state of RNA. Bioinform. 38 (6 ) : 1745-1748 (2022 )export record
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journals/bioinformatics/ButerezBTAL22 share record
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David Buterez , Ioana Bica , Ifrah Tariq , Helena Andrés-Terré , Pietro Liò : CellVGAE: an unsupervised scRNA-seq analysis workflow with graph attention networks. Bioinform. 38 (5 ) : 1277-1286 (2022 )export record
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journals/bioinformatics/BuyukozkanSK22 share record
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Mustafa Buyukozkan , Karsten Suhre , Jan Krumsiek : SGI: automatic clinical subgroup identification in omics datasets. Bioinform. 38 (2 ) : 573-576 (2022 )export record
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journals/bioinformatics/CaceresG22 share record
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Alejandro Cáceres , Juan R. González : teff : estimation of Treatment EFFects on transcriptomic data using causal random forest. Bioinform. 38 (11 ) : 3124-3125 (2022 )export record
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journals/bioinformatics/CaiS22 share record
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Dehan Cai , Yanni Sun : Reconstructing viral haplotypes using long reads. Bioinform. 38 (8 ) : 2127-2134 (2022 )export record
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Dehan Cai , Jiayu Shang , Yanni Sun : HaploDMF: viral haplotype reconstruction from long reads via deep matrix factorization. Bioinform. 38 (24 ) : 5360-5367 (2022 )export record
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journals/bioinformatics/CaiYCLFLBCMCW22 share record
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Manqi Cai , Molin Yue , Tianmeng Chen , Jinling Liu , Erick Forno , Xinghua Lu , Timothy Billiar , Juan C. Celedón , Chris McKennan , Wei Chen , Jiebiao Wang : Robust and accurate estimation of cellular fraction from tissue omics data via ensemble deconvolution. Bioinform. 38 (11 ) : 3004-3010 (2022 )export record
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journals/bioinformatics/CakmakciKBPPNC22 share record
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Doruk Cakmakci , Gun Kaynar , Caroline Bund , Martial Piotto , Francois Proust , Izzie-Jacques Namer , A. Ercüment Çiçek : Targeted metabolomics analyses for brain tumor margin assessment during surgery. Bioinform. 38 (12 ) : 3238-3244 (2022 )export record
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journals/bioinformatics/CameleMCMHBA22 share record
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Genaro Camele , Sebastian Menazzi , Hernán Chanfreau , Agustin Marraco , Waldo Hasperué , Matias D. Butti , Martin C. Abba : Multiomix: a cloud-based platform to infer cancer genomic and epigenomic events associated with gene expression modulation. Bioinform. 38 (3 ) : 866-868 (2022 )export record
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journals/bioinformatics/CameronDP22 share record
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Daniel Cameron , Ruining Dong , Anthony T. Papenfuss : StructuralVariantAnnotation: a R/Bioconductor foundation for a caller-agnostic structural variant software ecosystem. Bioinform. 38 (7 ) : 2046-2048 (2022 )export record
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journals/bioinformatics/CaneteIOBHP22 share record
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Nicolas P. Canete , Sourish S. Iyengar , John T. Ormerod , Heeva Baharlou , Andrew N. Harman , Ellis Patrick : spicyR: spatial analysis of in situ cytometry data in R. Bioinform. 38 (11 ) : 3099-3105 (2022 )export record
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journals/bioinformatics/CaoDWZLN22 share record
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Yang Cao , Qingyang Dong , Dan Wang , Pengcheng Zhang , Ying Liu , Chao Niu : microbiomeMarker: an R/Bioconductor package for microbiome marker identification and visualization. Bioinform. 38 (16 ) : 4027-4029 (2022 )export record
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journals/bioinformatics/CaoLPYY22 share record
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Yue Cao , Yingxin Lin , Ellis Patrick , Pengyi Yang , Jean Yee Hwa Yang : scFeatures: multi-view representations of single-cell and spatial data for disease outcome prediction. Bioinform. 38 (20 ) : 4745-4753 (2022 )export record
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journals/bioinformatics/CaoZBBDKMMRRRSHS22 share record
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Han Cao , Youcheng Zhang , Jan Baumbach , Paul R. Burton , Dominic B. Dwyer , Nikolaos Koutsouleris , Julian O. Matschinske , Yannick Marcon , Sivanesan Rajan , Thilo Rieg , Patricia Ryser-Welch , Julian Späth , Carl Herrmann , Emanuel Schwarz : dsMTL: a computational framework for privacy-preserving, distributed multi-task machine learning. Bioinform. 38 (21 ) : 4919-4926 (2022 )export record
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journals/bioinformatics/CaptierMMSZNBKZ22 share record
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Nicolas Captier , Jane Merlevede , Askhat Molkenov , Ainur Seisenova , Altynbek Zhubanchaliyev , Petr V. Nazarov , Emmanuel Barillot , Ulykbek Kairov , Andrei Yu. Zinovyev : BIODICA: a computational environment for Independent Component Analysis of omics data. Bioinform. 38 (10 ) : 2963-2964 (2022 )export record
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journals/bioinformatics/Caraballo-Ortiz22 share record
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Marcos A. Caraballo-Ortiz , Sayaka Miura , Maxwell D. Sanderford , Tenzin Dolker , Qiqing Tao , Steven Weaver , Sergei L. Kosakovsky Pond , Sudhir Kumar : TopHap: rapid inference of key phylogenetic structures from common haplotypes in large genome collections with limited diversity. Bioinform. 38 (10 ) : 2719-2726 (2022 )export record
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Milena A. Cardoso , Luis E. A. Rizzardi , Leonardo W. Kume , Clarice S. Groeneveld , Sheyla Trefflich , Diego A. A. Morais , Rodrigo J. S. Dalmolin , Bruce A. J. Ponder , Kerstin B. Meyer , Mauro A. A. Castro : TreeAndLeaf: an R/Bioconductor package for graphs and trees with focus on the leaves. Bioinform. 38 (5 ) : 1463-1464 (2022 )export record
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journals/bioinformatics/CarenzoPSLLC22 share record
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Andrea Carenzo , Federico Pistore , Mara S. Serafini , Deborah Lenoci , Armando G. Licata , Loris De Cecco : hacksig: a unified and tidy R framework to easily compute gene expression signature scores. Bioinform. 38 (10 ) : 2940-2942 (2022 )export record
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journals/bioinformatics/CarlucciKLGKPO22 share record
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Matthew Carlucci , Algimantas Krisciunas , Haohan Li , Povilas Gibas , Karolis Koncevicius , Art Petronis , Gabriel Oh : DiscoRhythm: an easy-to-use web application and R package for discovering rhythmicity. Bioinform. 38 (3 ) : 882 (2022 )export record
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journals/bioinformatics/CascaranoCSMPM22 share record
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Pasquale Cascarano , Maria Colomba Comes , Andrea Sebastiani , Arianna Mencattini , Elena Loli Piccolomini , Eugenio Martinelli : DeepCEL0 for 2D single-molecule localization in fluorescence microscopy. Bioinform. 38 (5 ) : 1411-1419 (2022 )export record
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Sean M. Cascarina , Eric D. Ross : The LCD-Composer webserver: high-specificity identification and functional analysis of low-complexity domains in proteins. Bioinform. 38 (24 ) : 5446-5448 (2022 )export record
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journals/bioinformatics/CastroHMSL22 share record
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Giovanni Marques de Castro , Zandora Hastenreiter , Thiago Augusto Silva Monteiro , Thieres Tayroni Martins da Silva , Francisco Pereira Lobo : Cross-species prediction of essential genes in insects. Bioinform. 38 (6 ) : 1504-1513 (2022 )export record
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journals/bioinformatics/CattaneoPGPR22 share record
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Giuseppe Cattaneo , Umberto Ferraro Petrillo , Raffaele Giancarlo , Francesco Palini , Chiara Romualdi : The power of word-frequency-based alignment-free functions: a comprehensive large-scale experimental analysis. Bioinform. 38 (4 ) : 925-932 (2022 )export record
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journals/bioinformatics/ChaguzaTLHCHB22 share record
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Chrispin Chaguza , Gerry Tonkin-Hill , Stephanie W. Lo , James Hadfield , Nicholas J. Croucher , Simon R. Harris , Stephen D. Bentley : RCandy: an R package for visualizing homologous recombinations in bacterial genomes. Bioinform. 38 (5 ) : 1450-1451 (2022 )export record
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journals/bioinformatics/ChatzigoulasC22 share record
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Alexios Chatzigoulas , Zoe Cournia : DREAMM: a web-based server for drugging protein-membrane interfaces as a novel workflow for targeted drug design. Bioinform. 38 (24 ) : 5449-5451 (2022 )export record
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Pierre-Alain Chaumeil , Aaron J. Mussig , Philip Hugenholtz , Donovan H. Parks : GTDB-Tk v2: memory friendly classification with the genome taxonomy database. Bioinform. 38 (23 ) : 5315-5316 (2022 )export record
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journals/bioinformatics/Chaves-UrbanoHG22 share record
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Blas Chaves-Urbano , Barbara Hernando , Maria J. Garcia , Geoff MacIntyre : CNpare: matching DNA copy number profiles. Bioinform. 38 (14 ) : 3638-3641 (2022 )