- Théo Roncalli, Loïc Paulevé:
Variable-Depth Simulation of Most Permissive Boolean Networks. CMSB 2022: 138-157 - Honglu Sun, Maxime Folschette, Morgan Magnin:
Limit Cycle Analysis of a Class of Hybrid Gene Regulatory Networks. CMSB 2022: 217-236 - Van-Giang Trinh, Belaid Benhamou, Kunihiko Hiraishi, Sylvain Soliman:
Minimal Trap Spaces of Logical Models are Maximal Siphons of Their Petri Net Encoding. CMSB 2022: 158-176 - Matej Troják, David Safránek, Branislav Brozmann, Lubos Brim:
eBCSgen 2.0: Modelling and Analysis of Regulated Rule-Based Systems. CMSB 2022: 302-309 - Hanna Josephine Wiederanders, Anne-Lena Moor, Christoph Zechner:
Automated Generation of Conditional Moment Equations for Stochastic Reaction Networks. CMSB 2022: 286-293 - Ion Petre, Andrei Paun:
Computational Methods in Systems Biology - 20th International Conference, CMSB 2022, Bucharest, Romania, September 14-16, 2022, Proceedings. Lecture Notes in Computer Science 13447, Springer 2022, ISBN 978-3-031-15033-3 [contents] - 2021
- Georgios Argyris, Alberto Lluch-Lafuente, Mirco Tribastone, Max Tschaikowski, Andrea Vandin:
Reducing Boolean Networks with Backward Boolean Equivalence. CMSB 2021: 1-18 - Nikola Benes, Lubos Brim, Samuel Pastva, David Safránek:
Aeon 2021: Bifurcation Decision Trees in Boolean Networks. CMSB 2021: 230-237 - Ansuman Biswas, Ashutosh Gupta, Meghana Missula, Mukund Thattai:
Automated Inference of Production Rules for Glycans. CMSB 2021: 57-73 - Marion Buffard, Aurélien Desoeuvres, Aurélien Naldi, Clément Requilé, Andrei Yu. Zinovyev, Ovidiu Radulescu:
LNetReduce: Tool for Reducing Linear Dynamic Networks with Separated Timescales. CMSB 2021: 238-244 - Francesca Cairoli, Ginevra Carbone, Luca Bortolussi:
Abstraction of Markov Population Dynamics via Generative Adversarial Nets. CMSB 2021: 19-35 - Candan Çelik, Pavol Bokes, Abhyudai Singh:
Protein Noise and Distribution in a Two-Stage Gene-Expression Model Extended by an mRNA Inactivation Loop. CMSB 2021: 215-229 - David Doty, Eric E. Severson:
Ppsim: A Software Package for Efficiently Simulating and Visualizing Population Protocols. CMSB 2021: 245-253 - Laetitia Gibart, Hélène Collavizza, Jean-Paul Comet:
Greening R. Thomas' Framework with Environment Variables: A Divide and Conquer Approach. CMSB 2021: 36-56 - Mathieu Hemery, François Fages, Sylvain Soliman:
Compiling Elementary Mathematical Functions into Finite Chemical Reaction Networks via a Polynomialization Algorithm for ODEs. CMSB 2021: 74-90 - Ilia Ilmer, Alexey Ovchinnikov, Gleb Pogudin:
Web-Based Structural Identifiability Analyzer. CMSB 2021: 254-265 - Gleb Pogudin, Xingjian Zhang:
Interpretable Exact Linear Reductions via Positivity. CMSB 2021: 91-107 - Misbah Razzaq, Louisa Goumidi, Maria-Jesus Iglesias, Gaëlle Munsch, Maria Bruzelius, Manal Ibrahim-Kosta, Lynn Butler, Jacob Odeberg, Pierre-Emmanuel Morange, David Alexandre Tregouet:
Explainable Artificial Neural Network for Recurrent Venous Thromboembolism Based on Plasma Proteomics. CMSB 2021: 108-121 - Mathilde Sautreuil, Sarah Lemler, Paul-Henry Cournède:
Neural Networks to Predict Survival from RNA-seq Data in Oncology. CMSB 2021: 122-140 - Gaurav Saxena, Miguel Ponce de Leon, Arnau Montagud, David Vicente Dorca, Alfonso Valencia:
BioFVM-X: An MPI+OpenMP 3-D Simulator for Biological Systems. CMSB 2021: 266-279 - Axel Theorell, Jörg Stelling:
Microbial Community Decision Making Models in Batch and Chemostat Cultures. CMSB 2021: 141-158 - Kerian Thuillier, Caroline Baroukh, Alexander Bockmayr, Ludovic Cottret, Loïc Paulevé, Anne Siegel:
Learning Boolean Controls in Regulated Metabolic Networks: A Case-Study. CMSB 2021: 159-180 - Baptiste Turpin, Eline Y. Bijman, Hans-Michael Kaltenbach, Jörg Stelling:
Population Design for Synthetic Gene Circuits. CMSB 2021: 181-197 - Tom Warnke, Adelinde M. Uhrmacher:
Nonlinear Pattern Matching in Rule-Based Modeling Languages. CMSB 2021: 198-214 - Eugenio Cinquemani, Loïc Paulevé:
Computational Methods in Systems Biology - 19th International Conference, CMSB 2021, Bordeaux, France, September 22-24, 2021, Proceedings. Lecture Notes in Computer Science 12881, Springer 2021, ISBN 978-3-030-85632-8 [contents] - 2020
- Sophie Le Bars, Jérémie Bourdon, Carito Guziolowski:
Comparing Probabilistic and Logic Programming Approaches to Predict the Effects of Enzymes in a Neurodegenerative Disease Model. CMSB 2020: 141-156 - Pavol Bokes, Julia Klein, Tatjana Petrov:
Accelerating Reactions at the DNA Can Slow Down Transient Gene Expression. CMSB 2020: 44-60 - Déborah Boyenval, Gilles Bernot, Hélène Collavizza, Jean-Paul Comet:
What is a Cell Cycle Checkpoint? The TotemBioNet Answer. CMSB 2020: 362-372 - Luca Cardelli:
Kaemika App: Integrating Protocols and Chemical Simulation - Integrating Protocols and Chemical Simulation. CMSB 2020: 373-379 - Candan Çelik, Pavol Bokes, Abhyudai Singh:
Stationary Distributions and Metastable Behaviour for Self-regulating Proteins with General Lifetime Distributions. CMSB 2020: 27-43