- 2023
- David Schaller, Manuela Geiß, Marc Hellmuth, Peter F. Stadler:
Best Match Graphs With Binary Trees. IEEE ACM Trans. Comput. Biol. Bioinform. 20(3): 1679-1690 (2023) - Hui Yu, KangKang Li, Jianyu Shi:
DGANDDI: Double Generative Adversarial Networks for Drug-Drug Interaction Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 20(3): 1854-1863 (2023) - Wei Wang, Bin Sun, MengXue Yu, ShiYu Wu, Dong Liu, Hongjun Zhang, Yun Zhou:
GraphPLBR: Protein-Ligand Binding Residue Prediction With Deep Graph Convolution Network. IEEE ACM Trans. Comput. Biol. Bioinform. 20(3): 2223-2232 (2023) - Amir Hossein Abolmasoumi, Mohammad Mohammadian, Lamine Mili:
Robust KALMAN Filter State Estimation for Gene Regulatory Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 20(2): 1395-1405 (2023) - Mainak Adhikari, Abhishek Hazra, Sudarshan Nandy:
Deep Transfer Learning for Communicable Disease Detection and Recommendation in Edge Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 20(4): 2468-2479 (2023) - Imran Ahmed, Abdellah Chehri, Gwanggil Jeon, Francesco Piccialli:
Automated Pulmonary Nodule Classification and Detection Using Deep Learning Architectures. IEEE ACM Trans. Comput. Biol. Bioinform. 20(4): 2445-2456 (2023) - Chengwei Ai, Hongpeng Yang, Yijie Ding, Jijun Tang, Fei Guo:
Low Rank Matrix Factorization Algorithm Based on Multi-Graph Regularization for Detecting Drug-Disease Association. IEEE ACM Trans. Comput. Biol. Bioinform. 20(5): 3033-3043 (2023) - Raeed Al-Sabri, Jianliang Gao, Jiamin Chen, Moctard Babatounde Oloulade, Tengfei Lyu:
Multi-View Graph Neural Architecture Search for Biomedical Entity and Relation Extraction. IEEE ACM Trans. Comput. Biol. Bioinform. 20(2): 1221-1233 (2023) - Abbas Saad Alatrany, Wasiq Khan, Abir Jaafar Hussain, Jamila Mustafina, Dhiya Al-Jumeily:
Transfer Learning for Classification of Alzheimer's Disease Based on Genome Wide Data. IEEE ACM Trans. Comput. Biol. Bioinform. 20(5): 2700-2711 (2023) - Alexsandro Oliveira Alexandrino, Klairton Lima Brito, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias:
Reversal and Indel Distance With Intergenic Region Information. IEEE ACM Trans. Comput. Biol. Bioinform. 20(3): 1628-1640 (2023) - Sarwan Ali, Bikram Sahoo, Muhammad Asad Khan, Alexander Zelikovsky, Imdadullah Khan, Murray Patterson:
Efficient Approximate Kernel Based Spike Sequence Classification. IEEE ACM Trans. Comput. Biol. Bioinform. 20(6): 3376-3388 (2023) - Elizabeth S. Allman, Hector Baños, John A. Rhodes:
Testing Multispecies Coalescent Simulators Using Summary Statistics. IEEE ACM Trans. Comput. Biol. Bioinform. 20(2): 1613-1618 (2023) - Volkan Altuntas:
Diffusion Alignment Coefficient (DAC): A Novel Similarity Metric for Protein-Protein Interaction Network. IEEE ACM Trans. Comput. Biol. Bioinform. 20(2): 894-903 (2023) - Naser Anjum, Raian Latif Nabil, Rakibul Islam Rafi, Md. Shamsuzzoha Bayzid, Mohammad Saifur Rahman:
CD-MAWS: An Alignment-Free Phylogeny Estimation Method Using Cosine Distance on Minimal Absent Word Sets. IEEE ACM Trans. Comput. Biol. Bioinform. 20(1): 196-205 (2023) - Muhammad Arsalan, Tariq Mahmood Khan, Syed Saud Naqvi, Mehmood Nawaz, Imran Razzak:
Prompt Deep Light-Weight Vessel Segmentation Network (PLVS-Net). IEEE ACM Trans. Comput. Biol. Bioinform. 20(2): 1363-1371 (2023) - Nikhilanand Arya, Archana Mathur, Snehanshu Saha, Sriparna Saha:
Proposal of SVM Utility Kernel for Breast Cancer Survival Estimation. IEEE ACM Trans. Comput. Biol. Bioinform. 20(2): 1372-1383 (2023) - Jun Bai, Chuantao Yin, Zimeng Wu, Jianfei Zhang, Yanmeng Wang, Guanyi Jia, Wenge Rong, Zhang Xiong:
Improving Biomedical ReQA With Consistent NLI-Transfer and Post-Whitening. IEEE ACM Trans. Comput. Biol. Bioinform. 20(3): 1864-1875 (2023) - Jun Bai, Chuantao Yin, Jianfei Zhang, Yanmeng Wang, Yi Dong, Wenge Rong, Zhang Xiong:
Adversarial Knowledge Distillation Based Biomedical Factoid Question Answering. IEEE ACM Trans. Comput. Biol. Bioinform. 20(1): 106-118 (2023) - Richard Bailey, Aisharjya Sarkar, Aaditya Singh, Alin Dobra, Tamer Kahveci:
Optimal Supervised Reduction of High Dimensional Transcription Data. IEEE ACM Trans. Comput. Biol. Bioinform. 20(5): 3093-3105 (2023) - Ibrahim Berber, Cesim Erten, Hilal Kazan:
Predator: Predicting the Impact of Cancer Somatic Mutations on Protein-Protein Interactions. IEEE ACM Trans. Comput. Biol. Bioinform. 20(5): 3163-3172 (2023) - Ramkishore Bhattacharyya:
Bidirectional Association Discovery Leads to Precise Identification of Lung Cancer Biomarkers and Genome Taxa Class. IEEE ACM Trans. Comput. Biol. Bioinform. 20(3): 1783-1794 (2023) - Yuexin Bian, Jintai Chen, Xiaojun Chen, Xiaoxian Yang, Danny Z. Chen, Jian Wu:
Identifying Electrocardiogram Abnormalities Using a Handcrafted-Rule-Enhanced Neural Network. IEEE ACM Trans. Comput. Biol. Bioinform. 20(4): 2434-2444 (2023) - Katrin Sophie Bohnsack, Marika Kaden, Julia Abel, Thomas Villmann:
Alignment-Free Sequence Comparison: A Systematic Survey From a Machine Learning Perspective. IEEE ACM Trans. Comput. Biol. Bioinform. 20(1): 119-135 (2023) - Pietro Bongini, Elisa Messori, Niccolò Pancino, Monica Bianchini:
A Deep Learning Approach to the Prediction of Drug Side-Effects on Molecular Graphs. IEEE ACM Trans. Comput. Biol. Bioinform. 20(6): 3681-3690 (2023) - Pietro Bongini, Franco Scarselli, Monica Bianchini, Giovanna Maria Dimitri, Niccolò Pancino, Pietro Lió:
Modular Multi-Source Prediction of Drug Side-Effects With DruGNN. IEEE ACM Trans. Comput. Biol. Bioinform. 20(2): 1211-1220 (2023) - Klairton Lima Brito, Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias:
Genome Rearrangement Distance With a Flexible Intergenic Regions Aspect. IEEE ACM Trans. Comput. Biol. Bioinform. 20(3): 1641-1653 (2023) - Zhipeng Cai, Min Li, Pavel Skums, Yanjie Wei:
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications. IEEE ACM Trans. Comput. Biol. Bioinform. 20(6): 3329-3331 (2023) - Wentian Cai, Linsen Xie, Weixian Yang, Yijiang Li, Ying Gao, Tingting Wang:
DFTNet: Dual-Path Feature Transfer Network for Weakly Supervised Medical Image Segmentation. IEEE ACM Trans. Comput. Biol. Bioinform. 20(4): 2530-2540 (2023) - Yu Cao, Wenya Pi, Chun-Yu Lin, Ulrike Münzner, Masahiro Ohtomo, Tatsuya Akutsu:
Common Attractors in Multiple Boolean Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 20(5): 2862-2873 (2023) - Qingqing Cao, Jianping Zhao, Hai-Yun Wang, Qi Guan, Chun-Hou Zheng:
An Integrated Method Based on Wasserstein Distance and Graph for Cancer Subtype Discovery. IEEE ACM Trans. Comput. Biol. Bioinform. 20(6): 3499-3510 (2023)