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@article{DBLP:journals/tcbb/0001GHS23, author = {David Schaller and Manuela Gei{\ss} and Marc Hellmuth and Peter F. Stadler}, title = {Best Match Graphs With Binary Trees}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {1679--1690}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3143870}, doi = {10.1109/TCBB.2022.3143870}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/0001GHS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/0011LS23, author = {Hui Yu and KangKang Li and Jianyu Shi}, title = {{DGANDDI:} Double Generative Adversarial Networks for Drug-Drug Interaction Prediction}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {1854--1863}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3219883}, doi = {10.1109/TCBB.2022.3219883}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/0011LS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/0166SYW0ZZ23, author = {Wei Wang and Bin Sun and MengXue Yu and ShiYu Wu and Dong Liu and Hongjun Zhang and Yun Zhou}, title = {GraphPLBR: Protein-Ligand Binding Residue Prediction With Deep Graph Convolution Network}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {2223--2232}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3239983}, doi = {10.1109/TCBB.2023.3239983}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/0166SYW0ZZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/AbolmasoumiMM23, author = {Amir Hossein Abolmasoumi and Mohammad Mohammadian and Lamine Mili}, title = {Robust {KALMAN} Filter State Estimation for Gene Regulatory Networks}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1395--1405}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3173969}, doi = {10.1109/TCBB.2022.3173969}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/AbolmasoumiMM23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/AdhikariHN23, author = {Mainak Adhikari and Abhishek Hazra and Sudarshan Nandy}, title = {Deep Transfer Learning for Communicable Disease Detection and Recommendation in Edge Networks}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {4}, pages = {2468--2479}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3180393}, doi = {10.1109/TCBB.2022.3180393}, timestamp = {Fri, 18 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/AdhikariHN23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/AhmedCJP23, author = {Imran Ahmed and Abdellah Chehri and Gwanggil Jeon and Francesco Piccialli}, title = {Automated Pulmonary Nodule Classification and Detection Using Deep Learning Architectures}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {4}, pages = {2445--2456}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3192139}, doi = {10.1109/TCBB.2022.3192139}, timestamp = {Fri, 18 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/AhmedCJP23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/AiYDTG23, author = {Chengwei Ai and Hongpeng Yang and Yijie Ding and Jijun Tang and Fei Guo}, title = {Low Rank Matrix Factorization Algorithm Based on Multi-Graph Regularization for Detecting Drug-Disease Association}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {3033--3043}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3274587}, doi = {10.1109/TCBB.2023.3274587}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/AiYDTG23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/AlSabriGCOL23, author = {Raeed Al{-}Sabri and Jianliang Gao and Jiamin Chen and Moctard Babatounde Oloulade and Tengfei Lyu}, title = {Multi-View Graph Neural Architecture Search for Biomedical Entity and Relation Extraction}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1221--1233}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3205113}, doi = {10.1109/TCBB.2022.3205113}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/AlSabriGCOL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/AlatranyKHMA23, author = {Abbas Saad Alatrany and Wasiq Khan and Abir Jaafar Hussain and Jamila Mustafina and Dhiya Al{-}Jumeily}, title = {Transfer Learning for Classification of Alzheimer's Disease Based on Genome Wide Data}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {2700--2711}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3233869}, doi = {10.1109/TCBB.2022.3233869}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/AlatranyKHMA23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/AlexandrinoBODD23, author = {Alexsandro Oliveira Alexandrino and Klairton Lima Brito and Andre Rodrigues Oliveira and Ulisses Dias and Zanoni Dias}, title = {Reversal and Indel Distance With Intergenic Region Information}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {1628--1640}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3215615}, doi = {10.1109/TCBB.2022.3215615}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/AlexandrinoBODD23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/AliSKZKP23, author = {Sarwan Ali and Bikram Sahoo and Muhammad Asad Khan and Alexander Zelikovsky and Imdadullah Khan and Murray Patterson}, title = {Efficient Approximate Kernel Based Spike Sequence Classification}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3376--3388}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3206284}, doi = {10.1109/TCBB.2022.3206284}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/AliSKZKP23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/AllmanBR23, author = {Elizabeth S. Allman and Hector Ba{\~{n}}os and John A. Rhodes}, title = {Testing Multispecies Coalescent Simulators Using Summary Statistics}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1613--1618}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3177956}, doi = {10.1109/TCBB.2022.3177956}, timestamp = {Mon, 01 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/AllmanBR23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/Altuntas23, author = {Volkan Altuntas}, title = {Diffusion Alignment Coefficient {(DAC):} {A} Novel Similarity Metric for Protein-Protein Interaction Network}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {894--903}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3185406}, doi = {10.1109/TCBB.2022.3185406}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/Altuntas23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/AnjumNRBR23, author = {Naser Anjum and Raian Latif Nabil and Rakibul Islam Rafi and Md. Shamsuzzoha Bayzid and Mohammad Saifur Rahman}, title = {{CD-MAWS:} An Alignment-Free Phylogeny Estimation Method Using Cosine Distance on Minimal Absent Word Sets}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {196--205}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2021.3136792}, doi = {10.1109/TCBB.2021.3136792}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/AnjumNRBR23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ArsalanKNNR23, author = {Muhammad Arsalan and Tariq Mahmood Khan and Syed Saud Naqvi and Mehmood Nawaz and Imran Razzak}, title = {Prompt Deep Light-Weight Vessel Segmentation Network (PLVS-Net)}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1363--1371}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3211936}, doi = {10.1109/TCBB.2022.3211936}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ArsalanKNNR23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/AryaMSS23, author = {Nikhilanand Arya and Archana Mathur and Snehanshu Saha and Sriparna Saha}, title = {Proposal of {SVM} Utility Kernel for Breast Cancer Survival Estimation}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1372--1383}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3198879}, doi = {10.1109/TCBB.2022.3198879}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/AryaMSS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/BaiYWZWJR023, author = {Jun Bai and Chuantao Yin and Zimeng Wu and Jianfei Zhang and Yanmeng Wang and Guanyi Jia and Wenge Rong and Zhang Xiong}, title = {Improving Biomedical ReQA With Consistent NLI-Transfer and Post-Whitening}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {1864--1875}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3219375}, doi = {10.1109/TCBB.2022.3219375}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/BaiYWZWJR023.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/BaiYZWDRX23, author = {Jun Bai and Chuantao Yin and Jianfei Zhang and Yanmeng Wang and Yi Dong and Wenge Rong and Zhang Xiong}, title = {Adversarial Knowledge Distillation Based Biomedical Factoid Question Answering}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {106--118}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3161032}, doi = {10.1109/TCBB.2022.3161032}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/BaiYZWDRX23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/BaileySSDK23, author = {Richard Bailey and Aisharjya Sarkar and Aaditya Singh and Alin Dobra and Tamer Kahveci}, title = {Optimal Supervised Reduction of High Dimensional Transcription Data}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {3093--3105}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3280557}, doi = {10.1109/TCBB.2023.3280557}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/BaileySSDK23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/BerberEK23, author = {Ibrahim Berber and Cesim Erten and Hilal Kazan}, title = {Predator: Predicting the Impact of Cancer Somatic Mutations on Protein-Protein Interactions}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {3163--3172}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3262119}, doi = {10.1109/TCBB.2023.3262119}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/BerberEK23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/Bhattacharyya23, author = {Ramkishore Bhattacharyya}, title = {Bidirectional Association Discovery Leads to Precise Identification of Lung Cancer Biomarkers and Genome Taxa Class}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {1783--1794}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3215630}, doi = {10.1109/TCBB.2022.3215630}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/Bhattacharyya23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/BianCCYCW23, author = {Yuexin Bian and Jintai Chen and Xiaojun Chen and Xiaoxian Yang and Danny Z. Chen and Jian Wu}, title = {Identifying Electrocardiogram Abnormalities Using a Handcrafted-Rule-Enhanced Neural Network}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {4}, pages = {2434--2444}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3140785}, doi = {10.1109/TCBB.2022.3140785}, timestamp = {Fri, 18 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/BianCCYCW23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/BohnsackKAV23, author = {Katrin Sophie Bohnsack and Marika Kaden and Julia Abel and Thomas Villmann}, title = {Alignment-Free Sequence Comparison: {A} Systematic Survey From a Machine Learning Perspective}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {119--135}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3140873}, doi = {10.1109/TCBB.2022.3140873}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/BohnsackKAV23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/BonginiMPB23, author = {Pietro Bongini and Elisa Messori and Niccol{\`{o}} Pancino and Monica Bianchini}, title = {A Deep Learning Approach to the Prediction of Drug Side-Effects on Molecular Graphs}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3681--3690}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3311015}, doi = {10.1109/TCBB.2023.3311015}, timestamp = {Fri, 26 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/BonginiMPB23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/BonginiSBDPL23, author = {Pietro Bongini and Franco Scarselli and Monica Bianchini and Giovanna Maria Dimitri and Niccol{\`{o}} Pancino and Pietro Li{\'{o}}}, title = {Modular Multi-Source Prediction of Drug Side-Effects With DruGNN}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1211--1220}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3175362}, doi = {10.1109/TCBB.2022.3175362}, timestamp = {Thu, 27 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/BonginiSBDPL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/BritoAODD23, author = {Klairton Lima Brito and Alexsandro Oliveira Alexandrino and Andre Rodrigues Oliveira and Ulisses Dias and Zanoni Dias}, title = {Genome Rearrangement Distance With a Flexible Intergenic Regions Aspect}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {1641--1653}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3165443}, doi = {10.1109/TCBB.2022.3165443}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/BritoAODD23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/CaiLSW23, author = {Zhipeng Cai and Min Li and Pavel Skums and Yanjie Wei}, title = {Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3329--3331}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3325032}, doi = {10.1109/TCBB.2023.3325032}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/CaiLSW23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/CaiXYLGW23, author = {Wentian Cai and Linsen Xie and Weixian Yang and Yijiang Li and Ying Gao and Tingting Wang}, title = {DFTNet: Dual-Path Feature Transfer Network for Weakly Supervised Medical Image Segmentation}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {4}, pages = {2530--2540}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3198284}, doi = {10.1109/TCBB.2022.3198284}, timestamp = {Wed, 08 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/CaiXYLGW23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/CaoPLMOA23, author = {Yu Cao and Wenya Pi and Chun{-}Yu Lin and Ulrike M{\"{u}}nzner and Masahiro Ohtomo and Tatsuya Akutsu}, title = {Common Attractors in Multiple Boolean Networks}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {2862--2873}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3268795}, doi = {10.1109/TCBB.2023.3268795}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/CaoPLMOA23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/CaoZWGZ23, author = {Qingqing Cao and Jianping Zhao and Hai{-}Yun Wang and Qi Guan and Chun{-}Hou Zheng}, title = {An Integrated Method Based on Wasserstein Distance and Graph for Cancer Subtype Discovery}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3499--3510}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3293472}, doi = {10.1109/TCBB.2023.3293472}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/CaoZWGZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/CaoZZJL23, author = {Yahui Cao and Tao Zhang and Xin Zhao and Xue Jia and Bingzhi Li}, title = {MooSeeker: {A} Metabolic Pathway Design Tool Based on Multi-Objective Optimization Algorithm}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3609--3622}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3307363}, doi = {10.1109/TCBB.2023.3307363}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/CaoZZJL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/CastiglioneNOPT23, author = {Filippo Castiglione and Christine Nardini and Elia Onofri and Marco Pedicini and Paolo Tieri}, title = {Explainable Drug Repurposing Approach From Biased Random Walks}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1009--1019}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3191392}, doi = {10.1109/TCBB.2022.3191392}, timestamp = {Thu, 27 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/CastiglioneNOPT23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ChaiJSZZYL23, author = {Zhaoying Chai and Han Jin and Shenghui Shi and Siyan Zhan and Lin Zhuo and Yu Yang and Qi Lian}, title = {Noise Reduction Learning Based on XLNet-CRF for Biomedical Named Entity Recognition}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {595--605}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3157630}, doi = {10.1109/TCBB.2022.3157630}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ChaiJSZZYL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/Chen0C023, author = {Shutao Chen and Lin Zhang and Xiangzhi Chen and Hui Liu}, title = {{FGFICA:} Independent Component Analysis of Fusion Genomic Features for Mining Epi-Transcriptome Profiling Data}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {1842--1853}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3220552}, doi = {10.1109/TCBB.2022.3220552}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/Chen0C023.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/Chen0L0Y23, author = {Peng Chen and Jian Wang and Hongfei Lin and Yijia Zhang and Zhihao Yang}, title = {Knowledge Adaptive Multi-Way Matching Network for Biomedical Named Entity Recognition via Machine Reading Comprehension}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {2101--2111}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3233856}, doi = {10.1109/TCBB.2022.3233856}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/Chen0L0Y23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ChenGLHYH23, author = {Nan Chen and Man Guo and Yongchao Li and Xiping Hu and Zhijun Yao and Bin Hu}, title = {Estimation of Discriminative Multimodal Brain Network Connectivity Using Message-Passing-Based Nonlinear Network Fusion}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {4}, pages = {2398--2406}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2021.3137498}, doi = {10.1109/TCBB.2021.3137498}, timestamp = {Fri, 18 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ChenGLHYH23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ChenGLMH23, author = {Jiamin Chen and Jianliang Gao and Tengfei Lyu and Oloulade Babatounde Moctard and Xiaohua Hu}, title = {AutoMSR: Auto Molecular Structure Representation Learning for Multi-label Metabolic Pathway Prediction}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3430--3439}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3198119}, doi = {10.1109/TCBB.2022.3198119}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/ChenGLMH23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ChenHXAC23, author = {Jiazhou Chen and Guoqiang Han and Aodan Xu and Tatsuya Akutsu and Hongmin Cai}, title = {Identifying miRNA-Gene Common and Specific Regulatory Modules for Cancer Subtyping by a High-Order Graph Matching Model}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {421--431}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3161635}, doi = {10.1109/TCBB.2022.3161635}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ChenHXAC23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ChenLHMZGZX23, author = {Zihao Chen and Nan Liu and Yang Huang and Xiaoping Min and Xiangxiang Zeng and Shengxiang Ge and Jun Zhang and Ning{-}Shao Xia}, title = {PointDE: Protein Docking Evaluation Using 3D Point Cloud Neural Network}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {3128--3138}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3279019}, doi = {10.1109/TCBB.2023.3279019}, timestamp = {Sat, 28 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ChenLHMZGZX23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ChenLYR23, author = {Hegang Chen and Yuyin Lu and Yuedong Yang and Yanghui Rao}, title = {A Drug Combination Prediction Framework Based on Graph Convolutional Network and Heterogeneous Information}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {1917--1925}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3224734}, doi = {10.1109/TCBB.2022.3224734}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ChenLYR23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ChenLZBZ23, author = {Shouzhi Chen and Yanhong Liao and Jianping Zhao and Yannan Bin and Chun{-}Hou Zheng}, title = {{PACVP:} Prediction of Anti-Coronavirus Peptides Using a Stacking Learning Strategy With Effective Feature Representation}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {3106--3116}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3238370}, doi = {10.1109/TCBB.2023.3238370}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ChenLZBZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ChenRTC23, author = {Jiazhou Chen and Wentao Rong and Guihua Tao and Hongmin Cai}, title = {Similarity Fusion via Exploiting High Order Proximity for Cancer Subtyping}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {658--667}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2021.3139597}, doi = {10.1109/TCBB.2021.3139597}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ChenRTC23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ChenSWWM23, author = {Qi{-}Qi Chen and Zhao{-}Hui Sun and Chuan{-}Feng Wei and Edmond Qi Wu and Dong Ming}, title = {Semi-Supervised 3D Medical Image Segmentation Based on Dual-Task Consistent Joint Learning and Task-Level Regularization}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {4}, pages = {2457--2467}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3144428}, doi = {10.1109/TCBB.2022.3144428}, timestamp = {Fri, 18 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ChenSWWM23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ChenSZWG23, author = {Peng Chen and Huimin Shen and Youzhi Zhang and Bing Wang and Pengying Gu}, title = {SGNet: Sequence-Based Convolution and Ligand Graph Network for Protein Binding Affinity Prediction}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {3257--3266}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3262821}, doi = {10.1109/TCBB.2023.3262821}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ChenSZWG23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ChenWFY23, author = {Cheng{-}Bang Chen and Yujie Wang and Xuanya Fu and Hui Yang}, title = {Recurrence Network Analysis of Histopathological Images for the Detection of Invasive Ductal Carcinoma in Breast Cancer}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {3234--3244}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3282798}, doi = {10.1109/TCBB.2023.3282798}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ChenWFY23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ChenWPXZWQL23, author = {Taoning Chen and Tingfang Wu and Deng Pan and Jinxing Xie and Jin Zhi and Xuejiao Wang and Lijun Quan and Qiang Lyu}, title = {TransRNAm: Identifying Twelve Types of {RNA} Modifications by an Interpretable Multi-Label Deep Learning Model Based on Transformer}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3623--3634}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3307419}, doi = {10.1109/TCBB.2023.3307419}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/ChenWPXZWQL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ChenZCJLC23, author = {Jiatao Chen and Liang Zhang and Ke Cheng and Bo Jin and Xinjiang Lu and Chao Che}, title = {Predicting Drug-Target Interaction Via Self-Supervised Learning}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {2781--2789}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3153963}, doi = {10.1109/TCBB.2022.3153963}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ChenZCJLC23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ChenZZNC23, author = {Cheng Chen and Yuguo Zha and Daming Zhu and Kang Ning and Xuefeng Cui}, title = {ContactLib-ATT: {A} Structure-Based Search Engine for Homologous Proteins}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3421--3429}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3197802}, doi = {10.1109/TCBB.2022.3197802}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ChenZZNC23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ChengYJQ23, author = {Xiaoqing Cheng and Chang Yan and Hao Jiang and Yushan Qiu}, title = {scHOIS: Determining Cell Heterogeneity Through Hierarchical Clustering Based on Optimal Imputation Strategy}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1431--1444}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3203592}, doi = {10.1109/TCBB.2022.3203592}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ChengYJQ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ChengZWSXS23, author = {Enhao Cheng and Jun Zhao and Hong Wang and Shuguang Song and Shuxian Xiong and Yanshen Sun}, title = {Dual Network Contrastive Learning for Predicting Microbe-Disease Associations}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3469--3481}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3228617}, doi = {10.1109/TCBB.2022.3228617}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/ChengZWSXS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ChuKLZZ23, author = {He{-}Ming Chu and Xiang{-}Zhen Kong and Jin{-}Xing Liu and Chun{-}Hou Zheng and Han Zhang}, title = {A New Binary Biclustering Algorithm Based on Weight Adjacency Difference Matrix for Analyzing Gene Expression Data}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {2802--2809}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3283801}, doi = {10.1109/TCBB.2023.3283801}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ChuKLZZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ChuNHNN23, author = {Thang Chu and Thuy Trang Nguyen and Bui Duong Hai and Quang Huy Nguyen and Tuan Nguyen}, title = {Graph Transformer for Drug Response Prediction}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1065--1072}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3206888}, doi = {10.1109/TCBB.2022.3206888}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ChuNHNN23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ChunikhinaLKYMM23, author = {Evgenia Chunikhina and Paul Logan and Yevgeniy Kovchegov and Anatoly Yambartsev and Debashis Mondal and Andrey Morgun}, title = {The {C-SHIFT} Algorithm for Normalizing Covariances}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {720--730}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3151840}, doi = {10.1109/TCBB.2022.3151840}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ChunikhinaLKYMM23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/Dang0OML0X23, author = {Qi Dang and Yong Liang and Dong Ouyang and Rui Miao and Caijin Ling and Xiao{-}Ying Liu and Shengli Xie}, title = {Improved Computational Drug-Repositioning by Self-Paced Non-Negative Matrix Tri-Factorization}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {1953--1962}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3225300}, doi = {10.1109/TCBB.2022.3225300}, timestamp = {Wed, 20 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/Dang0OML0X23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/DasSM23, author = {Pradeep Kumar Das and Biswajeet Sahoo and Sukadev Meher}, title = {An Efficient Detection and Classification of Acute Leukemia Using Transfer Learning and Orthogonal Softmax Layer-Based Model}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {1817--1828}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3218590}, doi = {10.1109/TCBB.2022.3218590}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/DasSM23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/DasTAPY23, author = {Pranab Das and Yogita Thakran and S. R. Ngamwal Anal and Vipin Pal and Anju Yadav}, title = {{BRMCF:} Binary Relevance and {MLSMOTE} Based Computational Framework to Predict Drug Functions From Chemical and Biological Properties of Drugs}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {1761--1773}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3215645}, doi = {10.1109/TCBB.2022.3215645}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/DasTAPY23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/DhanukaST23, author = {Richa Dhanuka and Jyoti Prakash Singh and Anushree Tripathi}, title = {A Comprehensive Survey of Deep Learning Techniques in Protein Function Prediction}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {2291--2301}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3247634}, doi = {10.1109/TCBB.2023.3247634}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/DhanukaST23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/DharejoZDZDKQ23, author = {Fayaz Ali Dharejo and Muhammad Zawish and Farah Deeba and Yuanchun Zhou and Kapal Dev and Sunder Ali Khowaja and Nawab Muhammad Faseeh Qureshi}, title = {Multimodal-Boost: Multimodal Medical Image Super-Resolution Using Multi-Attention Network With Wavelet Transform}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {4}, pages = {2420--2433}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3191387}, doi = {10.1109/TCBB.2022.3191387}, timestamp = {Fri, 18 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/DharejoZDZDKQ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/DingHTZG23, author = {Yijie Ding and Wenying He and Jijun Tang and Quan Zou and Fei Guo}, title = {Laplacian Regularized Sparse Representation Based Classifier for Identifying {DNA} N4-Methylcytosine Sites via {\textdollar}L{\_}\{2,1/2\}{\textdollar}L2,1/2-Matrix Norm}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {500--511}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2021.3133309}, doi = {10.1109/TCBB.2021.3133309}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/DingHTZG23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/DingLLW23, author = {Yulian Ding and Xiujuan Lei and Bo Liao and Fang{-}Xiang Wu}, title = {Biomarker Identification via a Factorization Machine-Based Neural Network With Binary Pairwise Encoding}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {2136--2146}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3235299}, doi = {10.1109/TCBB.2023.3235299}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/DingLLW23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/DingQZGCDS23, author = {Yi Ding and Xue Qin and Mingfeng Zhang and Ji Geng and Dajiang Chen and Fuhu Deng and Chunhe Song}, title = {RLSegNet: An Medical Image Segmentation Network Based on Reinforcement Learning}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {4}, pages = {2565--2576}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3195705}, doi = {10.1109/TCBB.2022.3195705}, timestamp = {Fri, 18 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/DingQZGCDS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/DingYMC23, author = {Xiaojian Ding and Fan Yang and Fumin Ma and Shilin Chen}, title = {A Unified Multi-Class Feature Selection Framework for Microarray Data}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3725--3736}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3314432}, doi = {10.1109/TCBB.2023.3314432}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/DingYMC23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/DongCVLQ23, author = {Xishuang Dong and Shanta Chowdhury and Uboho Victor and Xiangfang Li and Lijun Qian}, title = {Semi-Supervised Deep Learning for Cell Type Identification From Single-Cell Transcriptomic Data}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1492--1505}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3173587}, doi = {10.1109/TCBB.2022.3173587}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/DongCVLQ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/DuH0WL23, author = {Linlin Du and Rui Han and Bo Liu and Yadong Wang and Junyi Li}, title = {ScCCL: Single-Cell Data Clustering Based on Self-Supervised Contrastive Learning}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {2233--2241}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3241129}, doi = {10.1109/TCBB.2023.3241129}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/DuH0WL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/DuH23, author = {Xiuquan Du and Jiajia Hu}, title = {Deep Multi-Label Joint Learning for {RNA} and DNA-Binding Proteins Prediction}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {307--320}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3150280}, doi = {10.1109/TCBB.2022.3150280}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/DuH23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/DuHUL23, author = {Zhihua Du and Tianyou Huang and Vladimir N. Uversky and Jianqiang Li}, title = {Predicting {TF} Proteins by Incorporating Evolution Information Through {PSSM}}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1319--1326}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3199758}, doi = {10.1109/TCBB.2022.3199758}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/DuHUL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/DuYLZJ23, author = {Yongping Du and Jingya Yan and Yuxuan Lu and Yiliang Zhao and Xingnan Jin}, title = {Improving Biomedical Question Answering by Data Augmentation and Model Weighting}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1114--1124}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3171388}, doi = {10.1109/TCBB.2022.3171388}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/DuYLZJ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/FanSP23, author = {Yongxian Fan and Guicong Sun and Xiaoyong Pan}, title = {ELMo4m6A: {A} Contextual Language Embedding-Based Predictor for Detecting {RNA} N6-Methyladenosine Sites}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {944--954}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3173323}, doi = {10.1109/TCBB.2022.3173323}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/FanSP23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/FengQT23, author = {Yuhao Feng and Lei Qi and Weidong Tian}, title = {PhenoBERT: {A} Combined Deep Learning Method for Automated Recognition of Human Phenotype Ontology}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1269--1277}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3170301}, doi = {10.1109/TCBB.2022.3170301}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/FengQT23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/Fernandez-Fraga23, author = {Alejandro Fern{\'{a}}ndez{-}Fraga and Jorge Gonz{\'{a}}lez{-}Dom{\'{\i}}nguez and Juan Touri{\~{n}}o}, title = {ParRADMeth: Identification of Differentially Methylated Regions on Multicore Clusters}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {2041--2049}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3230473}, doi = {10.1109/TCBB.2022.3230473}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/Fernandez-Fraga23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/FreireLPS23, author = {Borja Freire and Susana Ladra and Jos{\'{e}} R. Param{\'{a}} and Leena Salmela}, title = {ViQUF: De Novo Viral Quasispecies Reconstruction Using Unitig-Based Flow Networks}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1550--1562}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3190282}, doi = {10.1109/TCBB.2022.3190282}, timestamp = {Mon, 01 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/FreireLPS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/FuZNZ23, author = {Haitao Fu and Cecheng Zhao and Xiaohui Niu and Wen Zhang}, title = {{DRLM:} {A} Robust Drug Representation Learning Method and its Applications}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3451--3460}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3213979}, doi = {10.1109/TCBB.2022.3213979}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/FuZNZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/FurtneyBK23, author = {Isaac Furtney and Ray M. Bradley and Mansur R. Kabuka}, title = {Patient Graph Deep Learning to Predict Breast Cancer Molecular Subtype}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {3117--3127}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3290394}, doi = {10.1109/TCBB.2023.3290394}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/FurtneyBK23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/GaoTXZW23, author = {Zhen Gao and Jin Tang and Junfeng Xia and Chun{-}Hou Zheng and Pi{-}Jing Wei}, title = {{CNNGRN:} {A} Convolutional Neural Network-Based Method for Gene Regulatory Network Inference From Bulk Time-Series Expression Data}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {2853--2861}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3282212}, doi = {10.1109/TCBB.2023.3282212}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/GaoTXZW23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/GaoWHLM23, author = {Xiaowei Gao and Yan Wang and Weimin Hou and Zaiyi Liu and Xiaoke Ma}, title = {Multi-View Clustering for Integration of Gene Expression and Methylation Data With Tensor Decomposition and Self-Representation Learning}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {2050--2063}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3229678}, doi = {10.1109/TCBB.2022.3229678}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/GaoWHLM23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/GaoZB23, author = {Honghao Gao and Zijian Zhang and Ram{\'{o}}n J. Dur{\'{a}}n Barroso}, title = {Guest Editorial Special Issue on Multi-Modal Biomedical Computing-Deep Transfer Learning}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {4}, pages = {2363--2366}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3284603}, doi = {10.1109/TCBB.2023.3284603}, timestamp = {Thu, 31 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/GaoZB23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/GargS23, author = {Shankey Garg and Pradeep Singh}, title = {Transfer Learning Based Lightweight Ensemble Model for Imbalanced Breast Cancer Classification}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1529--1539}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3174091}, doi = {10.1109/TCBB.2022.3174091}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/GargS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/GhasemiRK23, author = {Mahdieh Ghasemi and Maseud Rahgozar and Kaveh Kavousi}, title = {Complex Disease Genes Identification Using a Heterogeneous Network Embedding Approach}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {875--882}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3175598}, doi = {10.1109/TCBB.2022.3175598}, timestamp = {Sun, 30 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/GhasemiRK23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/GongJSB23, author = {Tiansu Gong and Fusong Ju and Shiwei Sun and Dongbo Bu}, title = {SASA-Net: {A} Spatial-Aware Self-Attention Mechanism for Building Protein 3D Structure Directly From Inter- Residue Distances}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3482--3488}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3240456}, doi = {10.1109/TCBB.2023.3240456}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/GongJSB23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/GongLFLWLC23, author = {Yinyin Gong and Rui Li and Bin Fu and Yan Liu and Jilong Wang and Renfa Li and Danny Z. Chen}, title = {A {CNN-LSTM} Ensemble Model for Predicting Protein-Protein Interaction Binding Sites}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3588--3599}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3306948}, doi = {10.1109/TCBB.2023.3306948}, timestamp = {Mon, 29 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/GongLFLWLC23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/GonzalezCrespoGPFP23, author = {Isabel Gonz{\'{a}}lez{-}Crespo and Antonio G{\'{o}}mez{-}Caama{\~{n}}o and {\'{O}}scar L{\'{o}}pez Pouso and John D. Fenwick and Juan Pardo{-}Montero}, title = {A Biomathematical Model of Tumor Response to Radioimmunotherapy With {\(\alpha\)}PDL1 and {\(\alpha\)}CTLA4}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {808--821}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3174454}, doi = {10.1109/TCBB.2022.3174454}, timestamp = {Wed, 17 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/GonzalezCrespoGPFP23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/GormezA23, author = {Yasin G{\"{o}}rmez and Zafer Aydin}, title = {IGPRED-MultiTask: {A} Deep Learning Model to Predict Protein Secondary Structure, Torsion Angles and Solvent Accessibility}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1104--1113}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3191395}, doi = {10.1109/TCBB.2022.3191395}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/GormezA23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/GuanAXLW23, author = {Yuxia Guan and Ying An and Jingrui Xu and Ning Liu and Jianxin Wang}, title = {HA-ResNet: Residual Neural Network With Hidden Attention for {ECG} Arrhythmia Detection Using Two-Dimensional Signal}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3389--3398}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3198998}, doi = {10.1109/TCBB.2022.3198998}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/GuanAXLW23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/GuanQJJDW23, author = {Shixuan Guan and Yuqing Qian and Tengsheng Jiang and Min Jiang and Yijie Ding and Hongjie Wu}, title = {{MV-H-RKM:} {A} Multiple View-Based Hypergraph Regularized Restricted Kernel Machine for Predicting DNA-Binding Proteins}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1246--1256}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3183191}, doi = {10.1109/TCBB.2022.3183191}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/GuanQJJDW23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/GuanZ23, author = {Xiaoyu Guan and Daoqiang Zhang}, title = {{T-MGCL:} Molecule Graph Contrastive Learning Based on Transformer for Molecular Property Prediction}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3851--3862}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3326145}, doi = {10.1109/TCBB.2023.3326145}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/GuanZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/GuanZWD23, author = {Shixuan Guan and Quan Zou and Hongjie Wu and Yijie Ding}, title = {Protein-DNA Binding Residues Prediction Using a Deep Learning Model With Hierarchical Feature Extraction}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {2619--2628}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3190933}, doi = {10.1109/TCBB.2022.3190933}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/GuanZWD23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/HaP23, author = {Jihwan Ha and Sanghyun Park}, title = {{NCMD:} Node2vec-Based Neural Collaborative Filtering for Predicting MiRNA-Disease Association}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1257--1268}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3191972}, doi = {10.1109/TCBB.2022.3191972}, timestamp = {Thu, 27 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/HaP23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/HasanMS23, author = {Md. Al Mehedi Hasan and Md. Maniruzzaman and Jungpil Shin}, title = {Gene Expression and Metadata Based Identification of Key Genes for Hepatocellular Carcinoma Using Machine Learning and Statistical Models}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3786--3799}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3322753}, doi = {10.1109/TCBB.2023.3322753}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/HasanMS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/HayamizuM23, author = {Momoko Hayamizu and Kazuhisa Makino}, title = {Ranking Top-{\textdollar}k{\textdollar} Trees in Tree-Based Phylogenetic Networks}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {2349--2355}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3229827}, doi = {10.1109/TCBB.2022.3229827}, timestamp = {Thu, 27 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/HayamizuM23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/HeCT023, author = {Yezi He and Xiangtao Chen and Nguyen Hoang Tu and Jiawei Luo}, title = {Deep Multi-Constraint Soft Clustering Analysis for Single-Cell RNA-Seq Data via Zero-Inflated Autoencoder Embedding}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {2254--2265}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3240253}, doi = {10.1109/TCBB.2023.3240253}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/HeCT023.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/HeZWCCGH23, author = {Ying He and Qinhu Zhang and Siguo Wang and Zhanheng Chen and Zhen Cui and Zhen{-}Hao Guo and De{-}Shuang Huang}, title = {Predicting the Sequence Specificities of DNA-Binding Proteins by {DNA} Fine-Tuned Language Model With Decaying Learning Rates}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {616--624}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3165592}, doi = {10.1109/TCBB.2022.3165592}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/HeZWCCGH23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/HerreraRomeroASVG23, author = {Bryan Herrera{-}Romero and Diego Almeida{-}Gal{\'{a}}rraga and Graciela M. Salum and Fernando Villalba{-}Meneses and Marco Esteban Gudi{\~{n}}o{-}Gomezjurado}, title = {GUSignal: An Informatics Tool to Analyze Glucuronidase Gene Expression in Arabidopsis Thaliana Roots}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1073--1080}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3190427}, doi = {10.1109/TCBB.2022.3190427}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/HerreraRomeroASVG23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/HuaSFWKY23, author = {Yang Hua and Xiaoning Song and Zhen{-}Hua Feng and Xiaojun Wu and Josef Kittler and Dong{-}Jun Yu}, title = {CPInformer for Efficient and Robust Compound-Protein Interaction Prediction}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {285--296}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3144008}, doi = {10.1109/TCBB.2022.3144008}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/HuaSFWKY23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/HuangBZLZ23, author = {Yiran Huang and Yongjin Bin and Pingfan Zeng and Wei Lan and Cheng Zhong}, title = {NetPro: Neighborhood Interaction-Based Drug Repositioning via Label Propagation}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {2159--2169}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3234331}, doi = {10.1109/TCBB.2023.3234331}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/HuangBZLZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/HuangSZHL23, author = {Xin Huang and Benzhe Su and Chenbo Zhu and Xinyu He and Xiaohui Lin}, title = {Dynamic Network Construction for Identifying Early Warning Signals Based On a Data-Driven Approach: Early Diagnosis Biomarker Discovery for Gastric Cancer}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {923--931}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3176319}, doi = {10.1109/TCBB.2022.3176319}, timestamp = {Sun, 21 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/HuangSZHL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/HuangTZHD23, author = {Weixian Huang and Kaiwen Tan and Ziye Zhang and Jinlong Hu and Shoubin Dong}, title = {A Review of Fusion Methods for Omics and Imaging Data}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {74--93}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3143900}, doi = {10.1109/TCBB.2022.3143900}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/HuangTZHD23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/HuangWLZ23, author = {Yiran Huang and Zhihong Wu and Wei Lan and Cheng Zhong}, title = {Predicting Disease-Associated N7-Methylguanosine (m\({}^{\mbox{7}}\)G) Sites via Random Walk on Heterogeneous Network}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {3173--3181}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3284505}, doi = {10.1109/TCBB.2023.3284505}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/HuangWLZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/HuangWYWG23, author = {Zimo Huang and Jun Wang and Zhongmin Yan and Lin Wan and Maozu Guo}, title = {Differential Gene Expression Prediction by Ensemble Deep Networks on Histone Modification Data}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {340--351}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2021.3139634}, doi = {10.1109/TCBB.2021.3139634}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/HuangWYWG23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/HuangWZWZ23, author = {Chenxi Huang and Wei Wang and Xin Zhang and Shui{-}Hua Wang and Yudong Zhang}, title = {Tuberculosis Diagnosis Using Deep Transferred EfficientNet}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {2639--2646}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3199572}, doi = {10.1109/TCBB.2022.3199572}, timestamp = {Fri, 02 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/HuangWZWZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/Inzamam-Ul-Hossain23, author = {Md. Inzamam{-}Ul{-}Hossain and Md. Rafiqul Islam}, title = {Identification of Essential Protein Using Chemical Reaction Optimization and Machine Learning Technique}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {2122--2135}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3233473}, doi = {10.1109/TCBB.2022.3233473}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/Inzamam-Ul-Hossain23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/IravaniC23, author = {Sahar Iravani and Tim O. F. Conrad}, title = {An Interpretable Deep Learning Approach for Biomarker Detection in {LC-MS} Proteomics Data}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {151--161}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3141656}, doi = {10.1109/TCBB.2022.3141656}, timestamp = {Thu, 27 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/IravaniC23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/IslamKISK23, author = {Tanzila Islam and Chyon Hae Kim and Hiroyoshi Iwata and Hiroyuki Shimono and Akio Kimura}, title = {DeepCGP: {A} Deep Learning Method to Compress Genome-Wide Polymorphisms for Predicting Phenotype of Rice}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {2078--2088}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3231466}, doi = {10.1109/TCBB.2022.3231466}, timestamp = {Thu, 27 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/IslamKISK23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/JainG23, author = {Aditi Jain and Arvind Kumar Gupta}, title = {Modeling mRNA Translation With Ribosome Abortions}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1600--1605}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3203171}, doi = {10.1109/TCBB.2022.3203171}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/JainG23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/JamaliKW23, author = {Ali Akbar Jamali and Anthony J. Kusalik and Fang{-}Xiang Wu}, title = {{NMTF-DTI:} {A} Nonnegative Matrix Tri-factorization Approach With Multiple Kernel Fusion for Drug-Target Interaction Prediction}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {586--594}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2021.3135978}, doi = {10.1109/TCBB.2021.3135978}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/JamaliKW23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/JeeKC23, author = {Dong Jun Jee and Yixin Kong and Hyonho Chun}, title = {Deep Nonnegative Matrix Factorization Using a Variational Autoencoder With Application to Single-Cell {RNA} Sequencing Data}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {883--893}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3172723}, doi = {10.1109/TCBB.2022.3172723}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/JeeKC23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/JeonBKK23, author = {Hajin Jeon and Jeongmin Bae and Hyerin Kim and Min{-}Soo Kim}, title = {VPrimer: {A} Method of Designing and Updating Primer and Probe With High Variant Coverage for {RNA} Virus Detection}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {775--784}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2021.3138145}, doi = {10.1109/TCBB.2021.3138145}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/JeonBKK23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/JhaS23, author = {Kanchan Jha and Sriparna Saha}, title = {Analyzing Effect of Multi-Modality in Predicting Protein-Protein Interactions}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {162--173}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3157531}, doi = {10.1109/TCBB.2022.3157531}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/JhaS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/JhaSK23, author = {Kanchan Jha and Sriparna Saha and Sourav Karmakar}, title = {Prediction of Protein-Protein Interactions Using Vision Transformer and Language Model}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {3215--3225}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3248797}, doi = {10.1109/TCBB.2023.3248797}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/JhaSK23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/JiYWQZ23, author = {Cunmei Ji and Ning Yu and Yu{-}Tian Wang and Rong Qi and Chun{-}Hou Zheng}, title = {An End-to-End Deep Hybrid Autoencoder Based Method for Single-Cell RNA-Seq Data Analysis}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3889--3900}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3328029}, doi = {10.1109/TCBB.2023.3328029}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/JiYWQZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/JiaMCY23, author = {Baoli Jia and Qingfang Meng and Yuehui Chen and Hongri Yang}, title = {Prediction of Membrane Protein Amphiphilic Helix Based on Horizontal Visibility Graph and Graph Convolution Network}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3567--3574}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3305493}, doi = {10.1109/TCBB.2023.3305493}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/JiaMCY23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/JiangL023, author = {Changkun Jiang and Weipeng Lv and Jianqiang Li}, title = {Protein-Protein Interaction Sites Prediction Using Batch Normalization Based CNNs and Oversampling Method Borderline-SMOTE}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {2190--2199}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3238001}, doi = {10.1109/TCBB.2023.3238001}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/JiangL023.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/JiangLWF23, author = {Hangjin Jiang and Han Li and Wing Hung Wong and Xiaodan Fan}, title = {Revealing Free Energy Landscape From {MD} Data via Conditional Angle Partition Tree}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1384--1394}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3172352}, doi = {10.1109/TCBB.2022.3172352}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/JiangLWF23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/JiangQLLZWL23, author = {Yelu Jiang and Lijun Quan and Kailong Li and Yan Li and Yiting Zhou and Tingfang Wu and Qiang Lyu}, title = {DGCddG: Deep Graph Convolution for Predicting Protein-Protein Binding Affinity Changes Upon Mutations}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {2089--2100}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3233627}, doi = {10.1109/TCBB.2022.3233627}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/JiangQLLZWL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/JiangSL23, author = {Yatong Jiang and Tao Shang and Jianwei Liu}, title = {Secure Counting Query Protocol for Genomic Data}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1457--1468}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3178446}, doi = {10.1109/TCBB.2022.3178446}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/JiangSL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/JiangSZYL23, author = {Likun Jiang and Nan Sun and Yue Zhang and Xinyu Yu and Xiangrong Liu}, title = {Bioactive Peptide Recognition Based on {NLP} Pre-Train Algorithm}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3809--3819}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3323295}, doi = {10.1109/TCBB.2023.3323295}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/JiangSZYL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/JiangTJHL23, author = {Changzhi Jiang and Minli Tang and Shuting Jin and Wei Huang and Xiangrong Liu}, title = {{KGNMDA:} {A} Knowledge Graph Neural Network Method for Predicting Microbe-Disease Associations}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1147--1155}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3184362}, doi = {10.1109/TCBB.2022.3184362}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/JiangTJHL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/JosephS23, author = {Steffy Maria Joseph and P. S. Sathidevi}, title = {An Automated cDNA Microarray Image Analysis for the Determination of Gene Expression Ratios}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {136--150}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2021.3135650}, doi = {10.1109/TCBB.2021.3135650}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/JosephS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/KangWPTCY23, author = {Yan Kang and Haining Wang and Bin Pu and Liu Tao and Jianguo Chen and Philip S. Yu}, title = {A Hybrid Two-Stage Teaching-Learning-Based Optimization Algorithm for Feature Selection in Bioinformatics}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {1746--1760}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3215129}, doi = {10.1109/TCBB.2022.3215129}, timestamp = {Thu, 07 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/KangWPTCY23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/KariBKY23, author = {Hemanth Kari and Surya Manikhanta Sowri Bandi and Aditya Kumar and Venkata Rajesh Yella}, title = {DeePromClass: Delineator for Eukaryotic Core Promoters Employing Deep Neural Networks}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {802--807}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3163418}, doi = {10.1109/TCBB.2022.3163418}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/KariBKY23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/KaurCA23, author = {Amandeep Kaur and Ajay Pal Singh Chauhan and Ashwani Kumar Aggarwal}, title = {Prediction of Enhancers in {DNA} Sequence Data using a Hybrid {CNN-DLSTM} Model}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1327--1336}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3167090}, doi = {10.1109/TCBB.2022.3167090}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/KaurCA23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/KerkettaEWHE23, author = {Romica Kerketta and M. Frank Erasmus and Bridget S. Wilson and {\'{A}}d{\'{a}}m M. Hal{\'{a}}sz and Jeremy S. Edwards}, title = {Spatial Stochastic Model of the Pre-B Cell Receptor}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {683--693}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3166149}, doi = {10.1109/TCBB.2022.3166149}, timestamp = {Thu, 27 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/KerkettaEWHE23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/KimothiBHD23, author = {Dhananjay Kimothi and Pravesh Biyani and James M. Hogan and Melissa J. Davis}, title = {Sequence Representations and Their Utility for Predicting Protein-Protein Interactions}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {646--657}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2021.3137325}, doi = {10.1109/TCBB.2021.3137325}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/KimothiBHD23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/KlosaSLW23, author = {Jan Klosa and Noah Simon and Volkmar Liebscher and D{\"{o}}rte Wittenburg}, title = {A Fitted Sparse-Group Lasso for Genome-Based Evaluations}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {30--38}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3156805}, doi = {10.1109/TCBB.2022.3156805}, timestamp = {Thu, 27 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/KlosaSLW23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/Koh23, author = {Hyunwook Koh}, title = {Subgroup Identification Using Virtual Twins for Human Microbiome Studies}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3800--3808}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3324139}, doi = {10.1109/TCBB.2023.3324139}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/Koh23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/KuangZLT23, author = {Mengmeng Kuang and Yong Zhang and Tak Wah Lam and Hing{-}Fung Ting}, title = {MLProbs: {A} Data-Centric Pipeline for Better Multiple Sequence Alignment}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {524--533}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3148382}, doi = {10.1109/TCBB.2022.3148382}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/KuangZLT23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/KumarD0P23, author = {Vikash Kumar and Akshay Deepak and Ashish Ranjan and Aravind Prakash}, title = {Lite-SeqCNN: {A} Light-Weight Deep {CNN} Architecture for Protein Function Prediction}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {2242--2253}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3240169}, doi = {10.1109/TCBB.2023.3240169}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/KumarD0P23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LahorkarBSRJ23, author = {Ashwin Lahorkar and Hrushikesh Bhosale and Aamod Sane and Vigneshwar Ramakrishnan and Valadi K. Jayaraman}, title = {Identification of Phase Separating Proteins With Distributed Reduced Alphabet Representations of Sequences}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {410--420}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3149310}, doi = {10.1109/TCBB.2022.3149310}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LahorkarBSRJ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LanCYAXYY23, author = {Jingfen Lan and Wenxiang Chen and Ganggang Yin and Haque A. K. Alvi and Kun Xie and Qiang Yu and Xiguo Yuan}, title = {{LDSSNV:} {A} Linkage Disequilibrium-Based Method for the Detection of Somatic Single-Nucleotide Variants}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {3020--3032}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3291134}, doi = {10.1109/TCBB.2023.3291134}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LanCYAXYY23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LandryTLS23, author = {Kaari Landry and Aivee Teodocio and Manuel Lafond and Olivier Tremblay Savard}, title = {Defining Phylogenetic Network Distances Using Cherry Operations}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {1654--1666}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3162991}, doi = {10.1109/TCBB.2022.3162991}, timestamp = {Thu, 27 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LandryTLS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LangaritaAIAM23, author = {Rub{\'{e}}n Langarita and Adri{\`{a}} Armejach and Pablo Ib{\'{a}}{\~{n}}ez and Jes{\'{u}}s Alastruey{-}Bened{\'{e}} and Miquel Moret{\'{o}}}, title = {Porting and Optimizing {BWA-MEM2} Using the Fujitsu {A64FX} Processor}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {3139--3153}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3264514}, doi = {10.1109/TCBB.2023.3264514}, timestamp = {Thu, 09 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/LangaritaAIAM23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LeeKKSL23, author = {Hunmin Lee and Mingon Kang and Donghyun Kim and Daehee Seo and Yingshu Li}, title = {Epidemic Vulnerability Index for Effective Vaccine Distribution Against Pandemic}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3332--3342}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3198365}, doi = {10.1109/TCBB.2022.3198365}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/LeeKKSL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LeeLH23, author = {Wook Lee and Seokwoo Lee and Kyungsook Han}, title = {Constructing a Cancer Patient-Specific Network Based on Second-Order Partial Correlations of Gene Expression and {DNA} Methylation}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {266--276}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3145796}, doi = {10.1109/TCBB.2022.3145796}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LeeLH23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LeeLRPH23, author = {Seokwoo Lee and Wook Lee and Shulei Ren and Byungkyu Park and Kyungsook Han}, title = {Constructing Integrative ceRNA Networks and Finding Prognostic Biomarkers in Renal Cell Carcinoma}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {2671--2680}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3214190}, doi = {10.1109/TCBB.2022.3214190}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LeeLRPH23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LiDZL23, author = {Hong{-}Dong Li and Chao Deng and Xiao{-}Qi Zhang and Cui{-}Xiang Lin}, title = {A Gene Set-Integrated Approach for Predicting Disease-Associated Genes}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3440--3450}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3214517}, doi = {10.1109/TCBB.2022.3214517}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/LiDZL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LiJOYZ23, author = {Bo Li and Ke Jin and Le Ou{-}Yang and Hong Yan and Xiao{-}Fei Zhang}, title = {scTSSR2: Imputing Dropout Events for Single-Cell {RNA} Sequencing Using Fast Two-Side Self-Representation}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1445--1456}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3170587}, doi = {10.1109/TCBB.2022.3170587}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LiJOYZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LiKCWLM23, author = {Ye Li and Fanhui Kong and Hui Cui and Fan Wang and Chunquan Li and Jiquan Ma}, title = {{SENIES:} {DNA} Shape Enhanced Two-Layer Deep Learning Predictor for the Identification of Enhancers and Their Strength}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {637--645}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3142019}, doi = {10.1109/TCBB.2022.3142019}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LiKCWLM23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LiLMNZ23, author = {Yuguang Li and Shuai Lu and Qiang Ma and Xiaofei Nan and Shoutao Zhang}, title = {Protein-Protein Interaction Site Prediction Based on Attention Mechanism and Convolutional Neural Networks}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3820--3829}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3323493}, doi = {10.1109/TCBB.2023.3323493}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/LiLMNZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LiLMZ23, author = {Jianyuan Li and Xiong Luo and Huimin Ma and Wenbing Zhao}, title = {A Hybrid Deep Transfer Learning Model With Kernel Metric for {COVID-19} Pneumonia Classification Using Chest {CT} Images}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {4}, pages = {2506--2517}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3216661}, doi = {10.1109/TCBB.2022.3216661}, timestamp = {Mon, 20 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/LiLMZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LiLXLCWZ23, author = {Xiong Li and Yangkai Lin and Chengwang Xie and Zejun Li and Min Chen and Peng Wang and Juan Zhou}, title = {A Clustering Method Unifying Cell-Type Recognition and Subtype Identification for Tumor Heterogeneity Analysis}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {822--832}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3203185}, doi = {10.1109/TCBB.2022.3203185}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LiLXLCWZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LiQJLZWL23, author = {Kailong Li and Lijun Quan and Yelu Jiang and Yan Li and Yiting Zhou and Tingfang Wu and Qiang Lyu}, title = {ctP\({}^{\mbox{2}}\)ISP: Protein-Protein Interaction Sites Prediction Using Convolution and Transformer With Data Augmentation}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {297--306}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3154413}, doi = {10.1109/TCBB.2022.3154413}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LiQJLZWL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LiSLL23, author = {Jiefu Li and Aman Sawhney and Jung{-}Youn Lee and Li Liao}, title = {Improving Inter-Helix Contact Prediction With Local 2D Topological Information}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {3001--3012}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3274361}, doi = {10.1109/TCBB.2023.3274361}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LiSLL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LiSWYFALYY23, author = {Qiang Li and Hong Song and Zenghui Wei and Fengbo Yang and Jingfan Fan and Danni Ai and Yucong Lin and Xiaoling Yu and Jian Yang}, title = {Densely Connected U-Net With Criss-Cross Attention for Automatic Liver Tumor Segmentation in {CT} Images}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3399--3410}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3198425}, doi = {10.1109/TCBB.2022.3198425}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/LiSWYFALYY23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LiSZZL23, author = {Min Li and Wenbo Shi and Fuhao Zhang and Min Zeng and Yaohang Li}, title = {A Deep Learning Framework for Predicting Protein Functions With Co-Occurrence of {GO} Terms}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {833--842}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3170719}, doi = {10.1109/TCBB.2022.3170719}, timestamp = {Mon, 01 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LiSZZL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LiWYHYW23, author = {Zheng{-}Wei Li and Qiankun Wang and Chang{-}An Yuan and Pengyong Han and Zhu{-}Hong You and Lei Wang}, title = {Predicting MiRNA-Disease Associations by Graph Representation Learning Based on Jumping Knowledge Networks}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {2629--2638}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3196394}, doi = {10.1109/TCBB.2022.3196394}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LiWYHYW23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LiWYL23, author = {Jianwei Li and Duanyang Wang and Zhenwu Yang and Ming Liu}, title = {{HEGANLDA:} {A} Computational Model for Predicting Potential Lncrna-Disease Associations Based On Multiple Heterogeneous Networks}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {388--398}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2021.3136886}, doi = {10.1109/TCBB.2021.3136886}, timestamp = {Thu, 27 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LiWYL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LiXLMLFZL23, author = {Aimin Li and Siqi Xiong and Junhuai Li and Saurav Mallik and Yajun Liu and Rong Fei and Hongfang Zhou and Guangming Liu}, title = {AngClust: Angle Feature-Based Clustering for Short Time Series Gene Expression Profiles}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1574--1580}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3192306}, doi = {10.1109/TCBB.2022.3192306}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LiXLMLFZL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LiangXZJYY23, author = {Tingting Liang and Congying Xia and Ziqiang Zhao and Yixuan Jiang and Yuyu Yin and Philip S. Yu}, title = {Transferring From Textual Entailment to Biomedical Named Entity Recognition}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {4}, pages = {2577--2586}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3236477}, doi = {10.1109/TCBB.2023.3236477}, timestamp = {Fri, 18 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LiangXZJYY23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LiangYLZWLC23, author = {Yixiong Liang and Zhihua Yin and Haotian Liu and Hailong Zeng and Jianxin Wang and Jianfeng Liu and Nanying Che}, title = {Weakly Supervised Deep Nuclei Segmentation With Sparsely Annotated Bounding Boxes for {DNA} Image Cytometry}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {785--795}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2021.3138189}, doi = {10.1109/TCBB.2021.3138189}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LiangYLZWLC23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LimaAFCS23, author = {Diego de S. Lima and Luiz J. A. Amichi and Maria A. Fernandez and Ademir Aparecido Constantino and Fl{\'{a}}vio A. V. Seixas}, title = {NCYPred: {A} Bidirectional {LSTM} Network With Attention for {Y} {RNA} and Short Non-Coding {RNA} Classification}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {557--565}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2021.3131136}, doi = {10.1109/TCBB.2021.3131136}, timestamp = {Fri, 02 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LimaAFCS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LinDSCLVHDTGKM23, author = {Chun Pang Lin and Yajie Duan and Davit Sargsyan and Javier Cabrera and Christine M. Livingston and Robert Vogel and John Hartman and Mayukh Das and Willem Talloen and Helena Geys and Evangelos D. Kanoulas and Surya Mohanty}, title = {Automated Spot Counting in Microbiology}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3703--3714}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3317339}, doi = {10.1109/TCBB.2023.3317339}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/LinDSCLVHDTGKM23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LinKLSJY0023, author = {Xiangbin Lin and Weizhuang Kong and Jianxiu Li and Xuexiao Shao and Changting Jiang and Ruilan Yu and Xiaowei Li and Bin Hu}, title = {Aberrant Static and Dynamic Functional Brain Network in Depression Based on {EEG} Source Localization}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {1876--1889}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3222592}, doi = {10.1109/TCBB.2022.3222592}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LinKLSJY0023.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LinQWGZY23, author = {Xuan Lin and Zhe Quan and Zhi{-}Jie Wang and Yan Guo and Xiangxiang Zeng and Philip S. Yu}, title = {Effectively Identifying Compound-Protein Interaction Using Graph Neural Representation}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {932--943}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3198003}, doi = {10.1109/TCBB.2022.3198003}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LinQWGZY23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LinTLL23, author = {Jinghang Lin and Xiaoran Tong and Chenxi Li and Qing Lu}, title = {Expectile Neural Networks for Genetic Data Analysis of Complex Diseases}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {352--359}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3146795}, doi = {10.1109/TCBB.2022.3146795}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LinTLL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LiuCSWZ23, author = {Xue Liu and Qian Cheng and Dan Sun and Wei Wei and Zhiming Zheng}, title = {Anonymous Pattern Molecular Fingerprint and its Applications on Property Identification}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3759--3771}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3322697}, doi = {10.1109/TCBB.2023.3322697}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/LiuCSWZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LiuHDZYFH23, author = {Ran Liu and Ye{-}Fan Hu and Jin Du and Bao{-}Zhong Zhang and Thomas Yau and Xiaodan Fan and Jian{-}Dong Huang}, title = {Family-Specific Training Improves Linear {B} Cell Epitope Prediction for Emerging Viruses}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3669--3680}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3311444}, doi = {10.1109/TCBB.2023.3311444}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/LiuHDZYFH23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LiuJNWQZ23, author = {Zhi{-}Hao Liu and Cunmei Ji and Jian{-}Cheng Ni and Yu{-}Tian Wang and Li{-}Juan Qiao and Chun{-}Hou Zheng}, title = {Convolution Neural Networks Using Deep Matrix Factorization for Predicting Circrna-Disease Association}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {277--284}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2021.3138339}, doi = {10.1109/TCBB.2021.3138339}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LiuJNWQZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LiuKD23, author = {Jiwen Liu and Zhufang Kuang and Lei Deng}, title = {{GCNPCA:} miRNA-Disease Associations Prediction Algorithm Based on Graph Convolutional Neural Networks}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1041--1052}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3203564}, doi = {10.1109/TCBB.2022.3203564}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LiuKD23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LiuLDLC23, author = {Qie Liu and Junhao Li and Mingyu Dong and Min Liu and Yi Chai}, title = {Identification of Gene Regulatory Networks Using Variational Bayesian Inference in the Presence of Missing Data}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {399--409}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3144418}, doi = {10.1109/TCBB.2022.3144418}, timestamp = {Sat, 20 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LiuLDLC23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LiuLLWW23, author = {Kun Liu and Hong{-}Dong Li and Yaohang Li and Jun Wang and Jianxin Wang}, title = {A Comparison of Topologically Associating Domain Callers Based on Hi-C Data}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {15--29}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3147805}, doi = {10.1109/TCBB.2022.3147805}, timestamp = {Thu, 04 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LiuLLWW23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LiuLMHDHL23, author = {Qiaoliang Liu and Fu Liu and Yan Miao and Jiaxue He and Tian Dong and Tao Hou and Yun Liu}, title = {Virsearcher: Identifying Bacteriophages from Metagenomes by Combining Convolutional Neural Network and Gene Information}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {763--774}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3161135}, doi = {10.1109/TCBB.2022.3161135}, timestamp = {Thu, 16 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LiuLMHDHL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LiuLTX23, author = {Yongchang Liu and Peiying Li and Shikui Tu and Lei Xu}, title = {RefinePocket: An Attention-Enhanced and Mask-Guided Deep Learning Approach for Protein Binding Site Prediction}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {3314--3321}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3265640}, doi = {10.1109/TCBB.2023.3265640}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LiuLTX23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LiuLXLPW23, author = {Yingyi Liu and Hong{-}Dong Li and Yunpei Xu and Yi{-}Wei Liu and Xiaoqing Peng and Jianxin Wang}, title = {IsoCell: An Approach to Enhance Single Cell Clustering by Integrating Isoform-Level Expression Through Orthogonal Projection}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {465--475}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3147193}, doi = {10.1109/TCBB.2022.3147193}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LiuLXLPW23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LiuLZHZLD23, author = {Dayun Liu and Xianghui Li and Liangliang Zhang and Xiaowen Hu and Jiaxuan Zhang and Zhirong Liu and Lei Deng}, title = {{HGNNLDA:} Predicting lncRNA-Drug Sensitivity Associations via a Dual Channel Hypergraph Neural Network}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3547--3555}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3302468}, doi = {10.1109/TCBB.2023.3302468}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/LiuLZHZLD23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LiuWZLW23, author = {Qiaoming Liu and Dong Wang and Li Zhou and Jie Li and Guohua Wang}, title = {{MTGDC:} {A} Multi-Scale Tensor Graph Diffusion Clustering for Single-Cell {RNA} Sequencing Data}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {3056--3067}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3293112}, doi = {10.1109/TCBB.2023.3293112}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LiuWZLW23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LiuYGSZ23, author = {Jin{-}Xing Liu and Meng{-}Meng Yin and Ying{-}Lian Gao and Junliang Shang and Chun{-}Hou Zheng}, title = {{MSF-LRR:} Multi-Similarity Information Fusion Through Low-Rank Representation to Predict Disease-Associated Microbes}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {534--543}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3146176}, doi = {10.1109/TCBB.2022.3146176}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LiuYGSZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LiuZ23, author = {Kangchen Liu and Xiujun Zhang}, title = {PiTLiD: Identification of Plant Disease From Leaf Images Based on Convolutional Neural Network}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1278--1288}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3195291}, doi = {10.1109/TCBB.2022.3195291}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LiuZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LiuZCQDZZ23, author = {Shichao Liu and Yang Zhang and Yuxin Cui and Yang Qiu and Yifan Deng and Zhongfei Zhang and Wen Zhang}, title = {Enhancing Drug-Drug Interaction Prediction Using Deep Attention Neural Networks}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {976--985}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3172421}, doi = {10.1109/TCBB.2022.3172421}, timestamp = {Fri, 01 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/LiuZCQDZZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LiuZS23, author = {Shuhui Liu and Yupei Zhang and Xuequn Shang}, title = {GLassonet: Identifying Discriminative Gene Sets Among Molecular Subtypes of Breast Cancer}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {1905--1916}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3220623}, doi = {10.1109/TCBB.2022.3220623}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LiuZS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LiuZW23, author = {Qiaoming Liu and Xudong Zhao and Guohua Wang}, title = {A Clustering Ensemble Method for Cell Type Detection by Multiobjective Particle Optimization}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {1--14}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2021.3132400}, doi = {10.1109/TCBB.2021.3132400}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LiuZW23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LiuZWWL23, author = {Nian{-}Nian Liu and Ze{-}Qun Zhang and Yanan Wu and Ying{-}Long Wang and Ying Liang}, title = {CRBSP:Prediction of CircRNA-RBP Binding Sites Based on Multimodal Intermediate Fusion}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {2898--2906}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3272400}, doi = {10.1109/TCBB.2023.3272400}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LiuZWWL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LiuZZZG23, author = {Jin{-}Xing Liu and Dai{-}Jun Zhang and Jing{-}Xiu Zhao and Chun{-}Hou Zheng and Ying{-}Lian Gao}, title = {Non-Negative Low-Rank Representation With Similarity Correction for Cell Type Identification in scRNA-Seq Data}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3737--3747}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3319375}, doi = {10.1109/TCBB.2023.3319375}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/LiuZZZG23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LuCLHS23, author = {Xinguo Lu and Guanyuan Chen and Jinxin Li and Xiangjin Hu and Fengxu Sun}, title = {{MAGCN:} {A} Multiple Attention Graph Convolution Networks for Predicting Synthetic Lethality}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {2681--2689}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3221736}, doi = {10.1109/TCBB.2022.3221736}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LuCLHS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LuWMLS23, author = {Zhaowu Lu and Jun Wang and Rui Mao and Minhua Lu and Jun Shi}, title = {Jointly Composite Feature Learning and Autism Spectrum Disorder Classification Using Deep Multi-Output Takagi-Sugeno-Kang Fuzzy Inference Systems}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {476--488}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3163140}, doi = {10.1109/TCBB.2022.3163140}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LuWMLS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LuoWHH23, author = {Xin Luo and Liwei Wang and Pengwei Hu and Lun Hu}, title = {Predicting Protein-Protein Interactions Using Sequence and Network Information via Variational Graph Autoencoder}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {3182--3194}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3273567}, doi = {10.1109/TCBB.2023.3273567}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LuoWHH23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LvLJHS23, author = {Ji Lv and Guixia Liu and Yuan Ju and Houhou Huang and Ying Sun}, title = {{AADB:} {A} Manually Collected Database for Combinations of Antibiotics With Adjuvants}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {2827--2836}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3283221}, doi = {10.1109/TCBB.2023.3283221}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LvLJHS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LvLYWZ23, author = {Zhilong Lv and Yuexiao Lin and Rui Yan and Ying Wang and Fa Zhang}, title = {TransSurv: Transformer-Based Survival Analysis Model Integrating Histopathological Images and Genomic Data for Colorectal Cancer}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3411--3420}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3199244}, doi = {10.1109/TCBB.2022.3199244}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/LvLYWZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/MaDBDXWLN23, author = {Lijia Ma and Wenwei Deng and Yuan Bai and Zhanwei Du and Minfeng Xiao and Lin Wang and Jianqiang Li and Asoke K. Nandi}, title = {Identifying Phage Sequences From Metagenomic Data Using Deep Neural Network With Word Embedding and Attention Mechanism}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3772--3785}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3322870}, doi = {10.1109/TCBB.2023.3322870}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/MaDBDXWLN23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/MaKD23, author = {Zhihao Ma and Zhufang Kuang and Lei Deng}, title = {{NGCICM:} {A} Novel Deep Learning-Based Method for Predicting circRNA-miRNA Interactions}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {3080--3092}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3248787}, doi = {10.1109/TCBB.2023.3248787}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/MaKD23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/MaWHMSXCG23, author = {Yuxin Ma and Shuo Wang and Yang Hua and Ruhui Ma and Tao Song and Zhengui Xue and Heng Cao and Haibing Guan}, title = {Perceptual Data Augmentation for Biomedical Coronary Vessel Segmentation}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {4}, pages = {2494--2505}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3188148}, doi = {10.1109/TCBB.2022.3188148}, timestamp = {Fri, 18 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/MaWHMSXCG23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/MaZW23, author = {Xiaoke Ma and Wei Zhao and Wenming Wu}, title = {Layer-Specific Modules Detection in Cancer Multi-Layer Networks}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1170--1179}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3176859}, doi = {10.1109/TCBB.2022.3176859}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/MaZW23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/MadadiMCSWY23, author = {Yeganeh Madadi and Aboozar Monavarfeshani and Hao Chen and W. Daniel Stamer and Robert W. Williams and Siamak Yousefi}, title = {Artificial Intelligence Models for Cell Type and Subtype Identification Based on Single-Cell {RNA} Sequencing Data in Vision Science}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {2837--2852}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3284795}, doi = {10.1109/TCBB.2023.3284795}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/MadadiMCSWY23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/Maia0FM23, author = {Marcelo Rodrigues de Holanda Maia and Alexandre Plastino and Alex Alves Freitas and Jo{\~{a}}o Pedro de Magalh{\~{a}}es}, title = {Interpretable Ensembles of Classifiers for Uncertain Data With Bioinformatics Applications}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {1829--1841}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3218588}, doi = {10.1109/TCBB.2022.3218588}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/Maia0FM23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ManipurGPPM23, author = {Ichcha Manipur and Maurizio Giordano and Marina Piccirillo and Seetharaman Parashuraman and Lucia Maddalena}, title = {Community Detection in Protein-Protein Interaction Networks and Applications}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {217--237}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2021.3138142}, doi = {10.1109/TCBB.2021.3138142}, timestamp = {Fri, 08 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ManipurGPPM23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/Martin-VideV23, author = {Carlos Mart{\'{\i}}n{-}Vide and Miguel A. Vega{-}Rodr{\'{\i}}guez}, title = {Algorithms for Computational Biology: Eighth Edition}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {1626--1627}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3218808}, doi = {10.1109/TCBB.2022.3218808}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/Martin-VideV23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/MartinezPazGMCGHT23, author = {Pedro Mart{\'{\i}}nez{-}Paz and Javier Gomez{-}Pilar and Marta Mart{\'{\i}}n{-}Fern{\'{a}}ndez and Francisco C. Ceballos and Esther G{\'{o}}mez{-}S{\'{a}}nchez and Roberto Hornero and Eduardo Tamayo}, title = {Gene Co-Expression Networks Offer New Perspectives on Sepsis Pathophysiology}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3660--3668}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3309998}, doi = {10.1109/TCBB.2023.3309998}, timestamp = {Fri, 26 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/MartinezPazGMCGHT23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/MitraMKHR23, author = {Anushka Mitra and Shibambika Manna and Raima Kundu and Ditipriya Hazra and Amlan Roychowdhury}, title = {Brute Force Virtual Drug Screening with Molecular Dynamics Simulation and {MM/PBSA} to Find Potent Inhibitors of {METTL16}}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {2356--2361}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3233670}, doi = {10.1109/TCBB.2022.3233670}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/MitraMKHR23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/MondalB23, author = {Abhijit Mondal and Mukul S. Bansal}, title = {Generalizing the Domain-Gene-Species Reconciliation Framework to Microbial Genes and Domains}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3511--3522}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3294480}, doi = {10.1109/TCBB.2023.3294480}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/MondalB23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/MondalJSA23, author = {Arnab Kumar Mondal and Indu Joshi and Pravendra Singh and Prathosh AP}, title = {Clustering Single-Cell {RNA} Sequence Data Using Information Maximized and Noise-Invariant Representations}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {1983--1994}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3227202}, doi = {10.1109/TCBB.2022.3227202}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/MondalJSA23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/MouJ23, author = {Chenqi Mou and Wenwen Ju}, title = {Sparse Triangular Decomposition for Computing Equilibria of Biological Dynamic Systems Based on Chordal Graphs}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {1667--1678}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3156759}, doi = {10.1109/TCBB.2022.3156759}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/MouJ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/MoultonW23, author = {Vincent Moulton and Taoyang Wu}, title = {Planar Rooted Phylogenetic Networks}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1289--1297}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3185670}, doi = {10.1109/TCBB.2022.3185670}, timestamp = {Mon, 01 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/MoultonW23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/NazariZ23, author = {Leyla Nazari and Zahra Zinati}, title = {Gene Expression Classification for Biomarker Identification in Maize Subjected to Various Biotic Stresses}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {2170--2176}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3233844}, doi = {10.1109/TCBB.2022.3233844}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/NazariZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/NguyenQNT23, author = {Tri Minh Nguyen and Thomas P. Quinn and Thin Nguyen and Truyen Tran}, title = {Explaining Black Box Drug Target Prediction Through Model Agnostic Counterfactual Samples}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1020--1029}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3190266}, doi = {10.1109/TCBB.2022.3190266}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/NguyenQNT23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/NiCLWYLX23, author = {Zhichen Ni and Honglong Chen and Zhe Li and Xiaomeng Wang and Na Yan and Weifeng Liu and Feng Xia}, title = {{MSCET:} {A} Multi-Scenario Offloading Schedule for Biomedical Data Processing and Analysis in Cloud-Edge-Terminal Collaborative Vehicular Networks}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {4}, pages = {2376--2386}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2021.3131177}, doi = {10.1109/TCBB.2021.3131177}, timestamp = {Fri, 18 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/NiCLWYLX23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/OhashiMS23, author = {Masataka Ohashi and Shin{-}ichi Maeda and Chikara Sato}, title = {Helical Three Dimensional Reconstruction Using Bayesian Optimization for Cryogenic Electron Microscopy}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {2970--2980}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3268793}, doi = {10.1109/TCBB.2023.3268793}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/OhashiMS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/PaivaP23, author = {Antonio R. Paiva and Giovanni Pilloni}, title = {Inferring Microbial Biomass Yield and Cell Weight Using Probabilistic Macrochemical Modeling}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {442--454}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2021.3139290}, doi = {10.1109/TCBB.2021.3139290}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/PaivaP23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/PanZLLZW23, author = {Zhengsen Pan and Shusen Zhou and Tong Liu and Chanjuan Liu and Mujun Zang and Qingjun Wang}, title = {{WVDL:} Weighted Voting Deep Learning Model for Predicting RNA-Protein Binding Sites}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {3322--3328}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3252276}, doi = {10.1109/TCBB.2023.3252276}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/PanZLLZW23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/PanZZLZLW23, author = {Zhengsen Pan and Shusen Zhou and Hailin Zou and Chanjuan Liu and Mujun Zang and Tong Liu and Qingjun Wang}, title = {{MCNN:} Multiple Convolutional Neural Networks for RNA-Protein Binding Sites Prediction}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1180--1187}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3170367}, doi = {10.1109/TCBB.2022.3170367}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/PanZZLZLW23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/PedroFPBMN23, author = {Ricardo Wandr{\'{e}} Dias Pedro and Ana Luiza Silveira Ferreira and Rodolph Vinicius Siqueira Pessoa and Almir Galv{\~{a}}o Vieira Bitencourt and Ariane Machado{-}Lima and F{\'{a}}tima L. S. Nunes}, title = {A Stochastic Grammar Approach to Mass Classification in Mammograms}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {2302--2313}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3247144}, doi = {10.1109/TCBB.2023.3247144}, timestamp = {Fri, 21 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/PedroFPBMN23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/PengCDWL23, author = {Wei Peng and Zicheng Che and Wei Dai and Shoulin Wei and Wei Lan}, title = {Predicting miRNA-Disease Associations From miRNA-Gene-Disease Heterogeneous Network With Multi-Relational Graph Convolutional Network Model}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3363--3375}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3187739}, doi = {10.1109/TCBB.2022.3187739}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/PengCDWL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/PengLDCFP23, author = {Wei Peng and Ming Liu and Wei Dai and Tielin Chen and Yu Fu and Yi Pan}, title = {Multi-View Feature Aggregation for Predicting Microbe-Disease Association}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {2748--2758}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2021.3132611}, doi = {10.1109/TCBB.2021.3132611}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/PengLDCFP23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/PengZCDLW23, author = {Xiaoqing Peng and Wenjin Zhang and Wanxin Cui and Binrong Ding and Qingtong Lyu and Jianxin Wang}, title = {ADmeth: {A} Manually Curated Database for the Differential Methylation in Alzheimer's Disease}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {843--851}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3178087}, doi = {10.1109/TCBB.2022.3178087}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/PengZCDLW23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/PersiaLAMS23, author = {Leandro E. Di Persia and Tiago Lopez and Agustin Arce and Diego H. Milone and Georgina Stegmayer}, title = {exp2GO: Improving Prediction of Functions in the Gene Ontology With Expression Data}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {999--1008}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3167245}, doi = {10.1109/TCBB.2022.3167245}, timestamp = {Mon, 01 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/PersiaLAMS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/Pham23, author = {Tuan D. Pham}, title = {Classification of Caenorhabditis Elegans Locomotion Behaviors With Eigenfeature-Enhanced Long Short-Term Memory Networks}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {206--216}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3153668}, doi = {10.1109/TCBB.2022.3153668}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/Pham23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/Pham23a, author = {Tuan D. Pham}, title = {Prediction of Five-Year Survival Rate for Rectal Cancer Using Markov Models of Convolutional Features of RhoB Expression on Tissue Microarray}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {3195--3204}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3274211}, doi = {10.1109/TCBB.2023.3274211}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/Pham23a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/QayyumRTMA23, author = {Abdul Qayyum and Imran Razzak and M. Tanveer and Moona Mazher and Bandar Alhaqbani}, title = {High-Density Electroencephalography and Speech Signal Based Deep Framework for Clinical Depression Diagnosis}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {4}, pages = {2587--2597}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3257175}, doi = {10.1109/TCBB.2023.3257175}, timestamp = {Fri, 18 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/QayyumRTMA23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/QianDZG23, author = {Yuqing Qian and Yijie Ding and Quan Zou and Fei Guo}, title = {Multi-View Kernel Sparse Representation for Identification of Membrane Protein Types}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1234--1245}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3191325}, doi = {10.1109/TCBB.2022.3191325}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/QianDZG23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/QianZJLD23, author = {Yurong Qian and Jingjing Zheng and Ying Jiang and Shaoqiu Li and Lei Deng}, title = {Prediction of circRNA-MiRNA Association Using Singular Value Decomposition and Graph Neural Networks}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3461--3468}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3222777}, doi = {10.1109/TCBB.2022.3222777}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/QianZJLD23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/QiaoGJLZW23, author = {Li{-}Juan Qiao and Zhen Gao and Cunmei Ji and Zhi{-}Hao Liu and Chun{-}Hou Zheng and Yu{-}Tian Wang}, title = {Potential circRNA-Disease Association Prediction Using DeepWalk and Nonnegative Matrix Factorization}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {3154--3162}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3264466}, doi = {10.1109/TCBB.2023.3264466}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/QiaoGJLZW23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/QiuE23, author = {Junqiao Qiu and Ali Ebnenasir}, title = {Exploring Scalable Parallelization for Edit Distance-Based Motif Search}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1587--1593}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3208867}, doi = {10.1109/TCBB.2022.3208867}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/QiuE23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/QuanCSWL23, author = {Lijun Quan and Xiaomin Chu and Xiaoyu Sun and Tingfang Wu and Qiang Lyu}, title = {How Deepbics Quantifies Intensities of Transcription Factor-DNA Binding and Facilitates Prediction of Single Nucleotide Variant Pathogenicity With a Deep Learning Model Trained On ChIP-Seq Data Sets}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1594--1599}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3170343}, doi = {10.1109/TCBB.2022.3170343}, timestamp = {Fri, 28 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/QuanCSWL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/QureshiZAWLY23, author = {Rizwan Qureshi and Bin Zou and Tanvir Alam and Jia Wu and Victor H. F. Lee and Hong Yan}, title = {Computational Methods for the Analysis and Prediction of EGFR-Mutated Lung Cancer Drug Resistance: Recent Advances in Drug Design, Challenges and Future Prospects}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {238--255}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3141697}, doi = {10.1109/TCBB.2022.3141697}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/QureshiZAWLY23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/RagiRDJCG23, author = {Shankarachary Ragi and Md Hafizur Rahman and Jamison Duckworth and Kalimuthu Jawaharraj and Parvathi Chundi and Venkataramana Gadhamshetty}, title = {Artificial Intelligence-Driven Image Analysis of Bacterial Cells and Biofilms}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {174--184}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2021.3138304}, doi = {10.1109/TCBB.2021.3138304}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/RagiRDJCG23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/RanaCPM23, author = {Vishal Rana and Eli Chien and Jianhao Peng and Olgica Milenkovic}, title = {Small-Sample Estimation of the Mutational Support and Distribution of SARS-CoV-2}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {668--682}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3165395}, doi = {10.1109/TCBB.2022.3165395}, timestamp = {Thu, 27 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/RanaCPM23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/RanjanFFTD23, author = {Ashish Ranjan and Md. S. Fahad and David Fern{\'{a}}ndez{-}Baca and Sudhakar Tripathi and Akshay Deepak}, title = {MCWS-Transformers: Towards an Efficient Modeling of Protein Sequences via Multi Context-Window Based Scaled Self-Attention}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1188--1199}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3173789}, doi = {10.1109/TCBB.2022.3173789}, timestamp = {Wed, 17 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/RanjanFFTD23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/RanjanTD23, author = {Ashish Ranjan and Archana Tiwari and Akshay Deepak}, title = {A Sub-Sequence Based Approach to Protein Function Prediction via Multi-Attention Based Multi-Aspect Network}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {94--105}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2021.3130923}, doi = {10.1109/TCBB.2021.3130923}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/RanjanTD23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/RaoCYMSZ23, author = {Fan Rao and Minghan Chen and Defu Yang and Bess Morrell and Qianqian Song and Wentao Zhu}, title = {scENT for Revealing Gene Clusters From Single-Cell RNA-Seq Data}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {2266--2277}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3242260}, doi = {10.1109/TCBB.2023.3242260}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/RaoCYMSZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/RashidSK23, author = {Shamima Rashid and Suresh Sundaram and Chee Keong Kwoh}, title = {Empirical Study of Protein Feature Representation on Deep Belief Networks Trained With Small Data for Secondary Structure Prediction}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {955--966}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3168676}, doi = {10.1109/TCBB.2022.3168676}, timestamp = {Thu, 27 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/RashidSK23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/RavikumarXAFR23, author = {Visweswaran Ravikumar and Tong Xu and Wajd N. Al{-}Holou and Salar Fattahi and Arvind Rao}, title = {Efficient Inference of Spatially-Varying Gaussian Markov Random Fields With Applications in Gene Regulatory Networks}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {2920--2932}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3282028}, doi = {10.1109/TCBB.2023.3282028}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/RavikumarXAFR23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/RehmanTC23, author = {Mobeen Ur Rehman and Hilal Tayara and Kil To Chong}, title = {DL-m6A: Identification of N6-Methyladenosine Sites in Mammals Using Deep Learning Based on Different Encoding Schemes}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {904--911}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3192572}, doi = {10.1109/TCBB.2022.3192572}, timestamp = {Sun, 24 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/RehmanTC23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/RenGZHZL23, author = {Sheng Ren and Kehua Guo and Xiaokang Zhou and Bin Hu and Feihong Zhu and Entao Luo}, title = {Medical Image Super-Resolution Based on Semantic Perception Transfer Learning}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {4}, pages = {2598--2609}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3212343}, doi = {10.1109/TCBB.2022.3212343}, timestamp = {Thu, 14 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/RenGZHZL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/RiahiWPCD23, author = {Aryan Tajmir Riahi and Geoffrey Woollard and Fr{\'{e}}d{\'{e}}ric Poitevin and Anne Condon and Khanh Dao Duc}, title = {AlignOT: An Optimal Transport Based Algorithm for Fast 3D Alignment With Applications to Cryogenic Electron Microscopy Density Maps}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3842--3850}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3327633}, doi = {10.1109/TCBB.2023.3327633}, timestamp = {Fri, 26 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/RiahiWPCD23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/RomashchenkoLRP23, author = {Nikolai Romashchenko and Benjamin Linard and Eric Rivals and Fabio Pardi}, title = {Computing Phylo-{\textdollar}k{\textdollar}k-Mers}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {2889--2897}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3278049}, doi = {10.1109/TCBB.2023.3278049}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/RomashchenkoLRP23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/RoyDG23, author = {Satyaki Roy and Pratyay Dutta and Preetam Ghosh}, title = {Hierarchical Vaccine Allocation Based on Epidemiological and Behavioral Considerations}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {2981--2991}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3265317}, doi = {10.1109/TCBB.2023.3265317}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/RoyDG23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/Sabahi23, author = {Farnaz Sabahi}, title = {A Design of mRNA-Based {COVID-19} Vaccine Through Fuzzy Neural Network}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3648--3659}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3309650}, doi = {10.1109/TCBB.2023.3309650}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/Sabahi23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/SaheedBOA23, author = {Kayode Yakub Saheed and Bukola Fatimah Balogun and Braimah Joseph Odunayo and Mustapha Abdulsalam}, title = {Microarray Gene Expression Data Classification via Wilcoxon Sign Rank Sum and Novel Grey Wolf Optimized Ensemble Learning Models}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3575--3587}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3305429}, doi = {10.1109/TCBB.2023.3305429}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/SaheedBOA23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/SainiS23, author = {Manisha Saini and Seba Susan}, title = {VGGIN-Net: Deep Transfer Network for Imbalanced Breast Cancer Dataset}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {752--762}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3163277}, doi = {10.1109/TCBB.2022.3163277}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/SainiS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/SequeirosO0B23, author = {Carlos Sequeiros and Irene Otero{-}Muras and Carlos V{\'{a}}zquez and Julio R. Banga}, title = {Global Optimization Approach for Parameter Estimation in Stochastic Dynamic Models of Biosystems}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {1971--1982}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3225675}, doi = {10.1109/TCBB.2022.3225675}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/SequeirosO0B23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ShafieeFT23, author = {Shima Shafiee and Abdolhossein Fathi and Ghazaleh Taherzadeh}, title = {SPPPred: Sequence-Based Protein-Peptide Binding Residue Prediction Using Genetic Programming and Ensemble Learning}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {2029--2040}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3230540}, doi = {10.1109/TCBB.2022.3230540}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ShafieeFT23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ShahM23, author = {Ekta Shah and Pradipta Maji}, title = {Multi-View Kernel Learning for Identification of Disease Genes}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {2278--2290}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3247033}, doi = {10.1109/TCBB.2023.3247033}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ShahM23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ShenZDLW23, author = {Yang Shen and Jinlin Zhu and Zhaohong Deng and Wenwei Lu and Hongchao Wang}, title = {EnsDeepDP: An Ensemble Deep Learning Approach for Disease Prediction Through Metagenomics}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {986--998}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3201295}, doi = {10.1109/TCBB.2022.3201295}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ShenZDLW23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ShengHGCXW23, author = {Nan Sheng and Lan Huang and Ling Gao and Yangkun Cao and Xuping Xie and Yan Wang}, title = {A Survey of Computational Methods and Databases for lncRNA-MiRNA Interaction Prediction}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {2810--2826}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3264254}, doi = {10.1109/TCBB.2023.3264254}, timestamp = {Wed, 01 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/ShengHGCXW23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ShiFLXYY23, author = {Haoyuan Shi and Haisong Feng and Zhenxiao Lu and Wei Xue and Congshan Yang and Zhenyu Yue}, title = {{GRA-GCN:} Dense Granule Protein Prediction in Apicomplexa Protozoa Through Graph Convolutional Network}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {1963--1970}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3224836}, doi = {10.1109/TCBB.2022.3224836}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ShiFLXYY23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ShiLW23, author = {Xiaofeng Shi and Cheng Liang and Hong Wang}, title = {Multiview Robust Graph-Based Clustering for Cancer Subtype Identification}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {544--556}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3143897}, doi = {10.1109/TCBB.2022.3143897}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ShiLW23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/SiSZRL23, author = {Jiasheng Si and Liu Sun and Deyu Zhou and Jie Ren and Lin Li}, title = {Biomedical Argument Mining Based on Sequential Multi-Task Learning}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {864--874}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3173447}, doi = {10.1109/TCBB.2022.3173447}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/SiSZRL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/SinhaLM23, author = {Aman Sinha and Bo{-}Cheng Lai and Jhih{-}Yong Mai}, title = {A Bin-Based Indexing for Scalable Range Join on Genomic Data}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {2210--2222}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3240196}, doi = {10.1109/TCBB.2023.3240196}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/SinhaLM23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/SiniosoglouASLSGW23, author = {Ilias Siniosoglou and Vasileios Argyriou and Panagiotis G. Sarigiannidis and Thomas Lagkas and Antonios Sarigiannidis and Sotirios K. Goudos and Shaohua Wan}, title = {Post-Processing Fairness Evaluation of Federated Models: An Unsupervised Approach in Healthcare}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {4}, pages = {2518--2529}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3269767}, doi = {10.1109/TCBB.2023.3269767}, timestamp = {Fri, 18 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/SiniosoglouASLSGW23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/SobahyMA23, author = {Turki M. Sobahy and Olaa A. Motwalli and Meshari Alazmi}, title = {AllelePred: {A} Simple Allele Frequencies Ensemble Predictor for Different Single Nucleotide Variants}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {796--801}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3155659}, doi = {10.1109/TCBB.2022.3155659}, timestamp = {Thu, 27 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/SobahyMA23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/SongLL23, author = {Xuekun Song and Ke Liang and Juntao Li}, title = {{WGRLR:} {A} Weighted Group Regularized Logistic Regression for Cancer Diagnosis and Gene Selection}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1563--1573}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3203167}, doi = {10.1109/TCBB.2022.3203167}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/SongLL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/SongLWBXW23, author = {Xueli Song and Rongpeng Li and Kaiming Wang and Yuntong Bai and Yuzhu Xiao and Yu{-}Ping Wang}, title = {Joint Sparse Collaborative Regression on Imaging Genetics Study of Schizophrenia}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1137--1146}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3172289}, doi = {10.1109/TCBB.2022.3172289}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/SongLWBXW23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/SongTYYWDD23, author = {Jinmiao Song and Shengwei Tian and Long Yu and Qimeng Yang and Yuanxu Wang and Qiguo Dai and Xiaodong Duan}, title = {{ISLMI:} Predicting lncRNA-miRNA Interactions Based on Information Injection and Second-Order Graph Convolution Network}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {1737--1745}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3215151}, doi = {10.1109/TCBB.2022.3215151}, timestamp = {Wed, 09 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/SongTYYWDD23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/SoyluS23, author = {Necla Nisa Soylu and Emre Sefer}, title = {{BERT2OME:} Prediction of 2{\({'}\)}-O-Methylation Modifications From {RNA} Sequence by Transformer Architecture Based on {BERT}}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {2177--2189}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3237769}, doi = {10.1109/TCBB.2023.3237769}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/SoyluS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/SpirovM23, author = {Alexander V. Spirov and Ekaterina M. Myasnikova}, title = {Problem of Domain/Building Block Preservation in the Evolution of Biological Macromolecules and Evolutionary Computation}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1345--1362}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3175908}, doi = {10.1109/TCBB.2022.3175908}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/SpirovM23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/SteyaertAF23, author = {Aranka Steyaert and Pieter Audenaert and Jan Fostier}, title = {Improved Node and Arc Multiplicity Estimation in De Bruijn Graphs Using Approximate Inference in Conditional Random Fields}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {1995--2006}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3229085}, doi = {10.1109/TCBB.2022.3229085}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/SteyaertAF23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/SuP23, author = {Cui Su and Jun Pang}, title = {Target Control of Asynchronous Boolean Networks}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {707--719}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2021.3133608}, doi = {10.1109/TCBB.2021.3133608}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/SuP23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/SujamolRU23, author = {S. Sujamol and Vimina E. R. and Krishnakumar U.}, title = {Improving miRNA Disease Association Prediction Accuracy Using Integrated Similarity Information and Deep Autoencoders}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1125--1136}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3195514}, doi = {10.1109/TCBB.2022.3195514}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/SujamolRU23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/SunJWW23, author = {Junwei Sun and Haoping Ji and Yingcong Wang and Yanfeng Wang}, title = {Hybrid Projective Synchronization via {PI} Controller Based on {DNA} Strand Displacement}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1081--1091}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3190397}, doi = {10.1109/TCBB.2022.3190397}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/SunJWW23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/SunPLWYL23, author = {Jing Sun and Li Pan and Bin Li and Haoyue Wang and Bo Yang and Wenbin Li}, title = {A Construction Method of Dynamic Protein Interaction Networks by Using Relevant Features of Gene Expression Data}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {2790--2801}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3264241}, doi = {10.1109/TCBB.2023.3264241}, timestamp = {Sat, 28 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/SunPLWYL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/SunTH0L23, author = {Chang Sun and Rong Tang and Jipeng Huang and Jin{-}Mao Wei and Jian Liu}, title = {A Deep Neural Network-Based Co-Coding Method to Predict Drug-Protein Interactions by Analyzing the Feature Consistency Between Drugs and Proteins}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {2200--2209}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3237863}, doi = {10.1109/TCBB.2023.3237863}, timestamp = {Mon, 25 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/SunTH0L23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/SunWLZY23, author = {Yi Sun and Jian Wang and Hongfei Lin and Yijia Zhang and Zhihao Yang}, title = {Knowledge Guided Attention and Graph Convolutional Networks for Chemical-Disease Relation Extraction}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {489--499}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2021.3135844}, doi = {10.1109/TCBB.2021.3135844}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/SunWLZY23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/SureshRU23, author = {Nikhila T. Suresh and Vimina E. R. and Krishnakumar U.}, title = {Topology Driven Analysis of Protein - Protein Interactome for Prioritizing Key Comorbid Genes via Sub Graph Based Average Path Length Centrality}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {742--751}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3140388}, doi = {10.1109/TCBB.2022.3140388}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/SureshRU23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/SutantoT23, author = {Kevin Sutanto and Marcel Turcotte}, title = {Assessing Global-Local Secondary Structure Fingerprints to Classify {RNA} Sequences With Deep Learning}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {2736--2747}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2021.3118358}, doi = {10.1109/TCBB.2021.3118358}, timestamp = {Wed, 01 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/SutantoT23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/TamirSY23, author = {Azwad Tamir and Milad Salem and Jiann{-}Shiun Yuan}, title = {ProtEC: {A} Transformer Based Deep Learning System for Accurate Annotation of Enzyme Commission Numbers}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3691--3702}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3311427}, doi = {10.1109/TCBB.2023.3311427}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/TamirSY23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/Tamura23, author = {Takeyuki Tamura}, title = {Trimming Gene Deletion Strategies for Growth-Coupled Production in Constraint-Based Metabolic Networks: TrimGdel}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1540--1549}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3185221}, doi = {10.1109/TCBB.2022.3185221}, timestamp = {Thu, 27 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/Tamura23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/Tamura23a, author = {Takeyuki Tamura}, title = {MetNetComp: Database for Minimal and Maximal Gene-Deletion Strategies for Growth-Coupled Production of Genome-Scale Metabolic Networks}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3748--3758}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3317837}, doi = {10.1109/TCBB.2023.3317837}, timestamp = {Fri, 08 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/Tamura23a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/TangHK23, author = {Mengyi Tang and Kumbit Hwang and Sung Ha Kang}, title = {StemP: {A} Fast and Deterministic Stem-Graph Approach for {RNA} Secondary Structure Prediction}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {3278--3291}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3253049}, doi = {10.1109/TCBB.2023.3253049}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/TangHK23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/TangZWZ23, author = {Chunyan Tang and Cheng Zhong and Mian Wang and Fengfeng Zhou}, title = {{FMGNN:} {A} Method to Predict Compound-Protein Interaction With Pharmacophore Features and Physicochemical Properties of Amino Acids}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1030--1040}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3172340}, doi = {10.1109/TCBB.2022.3172340}, timestamp = {Thu, 27 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/TangZWZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/TchendjiYDZ23, author = {Vianney Kengne Tchendji and Franklin Ingrid Kamga Youmbi and Cl{\'{e}}mentin Tayou Djam{\'{e}}gni and Jerry Lacmou Zeutouo}, title = {A Parallel Tiled and Sparsified Four-Russians Algorithm for Nussinov's {RNA} Folding}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {1795--1806}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3216826}, doi = {10.1109/TCBB.2022.3216826}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/TchendjiYDZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/TharmakulasingamGRF23, author = {Mukunthan Tharmakulasingam and Brian Gardner and Roberto La Ragione and Anil Fernando}, title = {Rectified Classifier Chains for Prediction of Antibiotic Resistance From Multi-Labelled Data With Missing Labels}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {625--636}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3148577}, doi = {10.1109/TCBB.2022.3148577}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/TharmakulasingamGRF23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/TianFTY23, author = {Zhen Tian and Haichuan Fang and Zhixia Teng and Yangdong Ye}, title = {{GOGCN:} Graph Convolutional Network on Gene Ontology for Functional Similarity Analysis of Genes}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1053--1064}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3181300}, doi = {10.1109/TCBB.2022.3181300}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/TianFTY23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/TianZ0ZDYH23, author = {Liangliang Tian and Haixi Zhang and Bin Liu and Jiaqi Zhang and Nannan Duan and Aihong Yuan and Yingqiu Huo}, title = {{VMF-SSD:} {A} Novel V-Space Based Multi-Scale Feature Fusion {SSD} for Apple Leaf Disease Detection}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {2016--2028}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3229114}, doi = {10.1109/TCBB.2022.3229114}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/TianZ0ZDYH23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/TongLH23, author = {Liyun Tong and Jinling Liang and Hong{-}xiang Hu}, title = {Fault Detectability of Asynchronous Switched Boolean Networks: {A} Set Reachability Approach}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3876--3888}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3326172}, doi = {10.1109/TCBB.2023.3326172}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/TongLH23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/Tripathi023, author = {Prasun Chandra Tripathi and Soumen Bag}, title = {An Attention-Guided {CNN} Framework for Segmentation and Grading of Glioma Using 3D {MRI} Scans}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {1890--1904}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3220902}, doi = {10.1109/TCBB.2022.3220902}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/Tripathi023.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/TripathiMLCP23, author = {Asmita Tripathi and Rajkrishna Mondal and Tapobrata Lahiri and Deepak Chaurasiya and Manoj Kumar Pal}, title = {TemPred: {A} Novel Protein Template Search Engine to Improve Protein Structure Prediction}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {2112--2121}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3233846}, doi = {10.1109/TCBB.2022.3233846}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/TripathiMLCP23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/TuLCSH23, author = {Deng{-}Yao Tu and Peng{-}Chan Lin and Hsin{-}Hung Chou and Meng{-}Ru Shen and Sun{-}Yuan Hsieh}, title = {Slice-Fusion: Reducing False Positives in Liver Tumor Detection for Mask {R-CNN}}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {3267--3277}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3265394}, doi = {10.1109/TCBB.2023.3265394}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/TuLCSH23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/TuLLHS23, author = {Wenhui Tu and Guang Ling and Feng Liu and Fuyan Hu and Xiangxiang Song}, title = {{GCSTI:} {A} Single-Cell Pseudotemporal Trajectory Inference Method Based on Graph Compression}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {2945--2958}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3266109}, doi = {10.1109/TCBB.2023.3266109}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/TuLLHS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/TunaGYCA23, author = {Suha Tuna and Cagri Gulec and Emrah Yucesan and Ayse Cirakoglu and Yelda Tarkan Arguden}, title = {Gene Teams are on the Field: Evaluation of Variants in Gene-Networks Using High Dimensional Modelling}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {2959--2969}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3292245}, doi = {10.1109/TCBB.2023.3292245}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/TunaGYCA23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/TuncayE023, author = {Erhun Giray Tuncay and Riza Cenk Erdur and Tim Conrad}, title = {Parallel Exchange of Randomized SubGraphs for Optimization of Network Alignment: {PERSONA}}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {2064--2077}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3231489}, doi = {10.1109/TCBB.2022.3231489}, timestamp = {Thu, 27 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/TuncayE023.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/UnerKCTC23, author = {Onur Can Uner and Halil Ibrahim Kuru and Ramazan Gokberk Cinbis and {\"{O}}znur Tastan and A. Erc{\"{u}}ment {\c{C}}i{\c{c}}ek}, title = {DeepSide: {A} Deep Learning Approach for Drug Side Effect Prediction}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {330--339}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3141103}, doi = {10.1109/TCBB.2022.3141103}, timestamp = {Sat, 20 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/UnerKCTC23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/VillaverdeRHB23, author = {Alejandro F. Villaverde and Elba Raim{\'{u}}ndez{-}{\'{A}}lvarez and Jan Hasenauer and Julio R. Banga}, title = {Assessment of Prediction Uncertainty Quantification Methods in Systems Biology}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {1725--1736}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3213914}, doi = {10.1109/TCBB.2022.3213914}, timestamp = {Thu, 27 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/VillaverdeRHB23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/WanJ23, author = {Yunqi Wan and Zhenran Jiang}, title = {TransCrispr: Transformer Based Hybrid Model for Predicting CRISPR/Cas9 Single Guide {RNA} Cleavage Efficiency}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1518--1528}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3201631}, doi = {10.1109/TCBB.2022.3201631}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/WanJ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/WangCDM23, author = {Qingbin Wang and Kaiyi Chen and Wanrong Dou and Yutao Ma}, title = {Cross-Attention Based Multi-Resolution Feature Fusion Model for Self-Supervised Cervical {OCT} Image Classification}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {4}, pages = {2541--2554}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3246979}, doi = {10.1109/TCBB.2023.3246979}, timestamp = {Fri, 18 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/WangCDM23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/WangGQZ0023, author = {Xiaolin Wang and Hongli Gao and Ren Qi and Ruiqing Zheng and Xin Gao and Bin Yu}, title = {scBKAP: {A} Clustering Model for Single-Cell RNA-Seq Data Based on Bisecting K-Means}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {2007--2015}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3230098}, doi = {10.1109/TCBB.2022.3230098}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/WangGQZ0023.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/WangHW23, author = {Donglin Wang and Don Hong and Qiang Wu}, title = {Attention Deficit Hyperactivity Disorder Classification Based on Deep Learning}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1581--1586}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3170527}, doi = {10.1109/TCBB.2022.3170527}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/WangHW23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/WangLP23, author = {Yueyue Wang and Xiujuan Lei and Yi Pan}, title = {Microbe-Disease Association Prediction Using {RGCN} Through Microbe-Drug-Disease Network}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3353--3362}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3247035}, doi = {10.1109/TCBB.2023.3247035}, timestamp = {Mon, 29 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/WangLP23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/WangLW23, author = {Xin Wang and Jie Li and Guohua Wang}, title = {MicroRNA Promoter Identification in Human With a Three-level Prediction Method}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3600--3608}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3305992}, doi = {10.1109/TCBB.2023.3305992}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/WangLW23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/WangLWHCN23, author = {Huan Wang and Ruigang Liu and Baijing Wang and Yifan Hong and Ziwen Cui and Qiufen Ni}, title = {Multitype Perception Method for Drug-Target Interaction Prediction}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3489--3498}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3285042}, doi = {10.1109/TCBB.2023.3285042}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/WangLWHCN23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/WangNG0P23, author = {Yixin Wang and Md. Noor{-}A{-}Rahim and Erry Gunawan and Yong Liang Guan and Chueh{-}Loo Poh}, title = {Modelling, Characterization of Data-Dependent and Process-Dependent Errors in {DNA} Data Storage}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {2147--2158}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3233914}, doi = {10.1109/TCBB.2022.3233914}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/WangNG0P23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/WangQLL23, author = {Jinxia Wang and Liang Qiao and Haibin Lv and Zhihan Lv}, title = {Deep Transfer Learning-Based Multi-Modal Digital Twins for Enhancement and Diagnostic Analysis of Brain {MRI} Image}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {4}, pages = {2407--2419}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3168189}, doi = {10.1109/TCBB.2022.3168189}, timestamp = {Fri, 18 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/WangQLL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/WangSLZXC23, author = {Huadong Wang and Jianhui Sun and Mengya Liu and Chun{-}Hou Zheng and Junfeng Xia and Na Cheng}, title = {frDSM: An Ensemble Predictor With Effective Feature Representation for Deleterious Synonymous Mutation in Human Genome}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {371--377}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3167468}, doi = {10.1109/TCBB.2022.3167468}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/WangSLZXC23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/WangW23, author = {Huanhuan Wang and Xiang Wu}, title = {{IPP:} An Intelligent Privacy-Preserving Scheme for Detecting Interactions in Genome Association Studies}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {455--464}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3155774}, doi = {10.1109/TCBB.2022.3155774}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/WangW23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/WangWLZZLXZ23, author = {Shanshan Wang and Ruoyou Wu and Cheng Li and Juan Zou and Ziyao Zhang and Qiegen Liu and Yan Xi and Hairong Zheng}, title = {{PARCEL:} Physics-Based Unsupervised Contrastive Representation Learning for Multi-Coil {MR} Imaging}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {2659--2670}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3213669}, doi = {10.1109/TCBB.2022.3213669}, timestamp = {Sat, 28 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/WangWLZZLXZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/WangWS23, author = {Junlin Wang and Wenbo Wang and Yi Shang}, title = {Protein Loop Modeling Using AlphaFold2}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {3306--3313}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3264899}, doi = {10.1109/TCBB.2023.3264899}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/WangWS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/WangXYWLC23, author = {Mei{-}Neng Wang and Xue{-}Jun Xie and Zhu{-}Hong You and Leon Wong and Li{-}Ping Li and Zhan{-}Heng Chen}, title = {Combining {K} Nearest Neighbor With Nonnegative Matrix Factorization for Predicting Circrna-Disease Associations}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {2610--2618}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3180903}, doi = {10.1109/TCBB.2022.3180903}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/WangXYWLC23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/WangYFZCWC23, author = {Wei Wang and Xinhua Yu and Bo Fang and Yue Zhao and Yongyong Chen and Wei Wei and Junxin Chen}, title = {Cross-Modality {LGE-CMR} Segmentation Using Image-to-Image Translation Based Data Augmentation}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {4}, pages = {2367--2375}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3140306}, doi = {10.1109/TCBB.2022.3140306}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/WangYFZCWC23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/WangYYHZWH23, author = {Xiaojuan Wang and Wen Yang and Yue Yang and Yizhou He and Jun Zhang and Lusheng Wang and Lun Hu}, title = {{PPISB:} {A} Novel Network-Based Algorithm of Predicting Protein-Protein Interactions With Mixed Membership Stochastic Blockmodel}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1606--1612}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3196336}, doi = {10.1109/TCBB.2022.3196336}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/WangYYHZWH23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/WangYYWWC23, author = {Xingze Wang and Guoxian Yu and Zhongmin Yan and Lin Wan and Wei Wang and Lizhen Cui}, title = {Lung Cancer Subtype Diagnosis by Fusing Image-Genomics Data and Hybrid Deep Networks}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {512--523}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2021.3132292}, doi = {10.1109/TCBB.2021.3132292}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/WangYYWWC23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/WangZC23, author = {Hongxiao Wang and Hao Zheng and Danny Z. Chen}, title = {{TANGO:} {A} GO-Term Embedding Based Method for Protein Semantic Similarity Prediction}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {694--706}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3143480}, doi = {10.1109/TCBB.2022.3143480}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/WangZC23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/WangZJS23, author = {Chao Wang and Quan Zou and Ying Ju and Hua Shi}, title = {Enhancer-FRL: Improved and Robust Identification of Enhancers and Their Activities Using Feature Representation Learning}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {967--975}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3204365}, doi = {10.1109/TCBB.2022.3204365}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/WangZJS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/WangZL23, author = {Ning Wang and Jun Zhang and Bin Liu}, title = {iDRBP-EL: Identifying {DNA-} and {RNA-} Binding Proteins Based on Hierarchical Ensemble Learning}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {432--441}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2021.3136905}, doi = {10.1109/TCBB.2021.3136905}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/WangZL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/WangZLYZ23, author = {Xinyi Wang and Mingyang Zhang and Chunlin Long and Lin Yao and Min Zhu}, title = {Self-Attention Based Neural Network for Predicting RNA-Protein Binding Sites}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1469--1479}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3204661}, doi = {10.1109/TCBB.2022.3204661}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/WangZLYZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/WedellCW23, author = {Eleanor Wedell and Yirong Cai and Tandy J. Warnow}, title = {{SCAMPP:} Scaling Alignment-Based Phylogenetic Placement to Large Trees}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1417--1430}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3170386}, doi = {10.1109/TCBB.2022.3170386}, timestamp = {Thu, 27 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/WedellCW23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/WeiCZZFGLQ23, author = {Ze{-}Gang Wei and Xu Chen and Xiao{-}Dan Zhang and Hao Zhang and Xing{-}Guo Fan and Hongyan Gao and Fei Liu and Yu Qian}, title = {Comparison of Methods for Biological Sequence Clustering}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {2874--2888}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3253138}, doi = {10.1109/TCBB.2023.3253138}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/WeiCZZFGLQ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/WilliamsTM23, author = {Lucia Williams and Alexandru I. Tomescu and Brendan Mumey}, title = {Flow Decomposition With Subpath Constraints}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {360--370}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3147697}, doi = {10.1109/TCBB.2022.3147697}, timestamp = {Thu, 27 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/WilliamsTM23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/WitmerTB23, author = {Adam Witmer and Rajkumar Theagarajan and Bir Bhanu}, title = {Triplet-Net Classification of Contiguous Stem Cell Microscopy Images}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {2314--2327}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3247957}, doi = {10.1109/TCBB.2023.3247957}, timestamp = {Wed, 12 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/WitmerTB23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/WuLCSH23, author = {Tzu{-}Hsuan Wu and Peng{-}Chan Lin and Hsin{-}Hung Chou and Meng{-}Ru Shen and Sun{-}Yuan Hsieh}, title = {Pathogenicity Prediction of Single Amino Acid Variants With Machine Learning Model Based on Protein Structural Energies}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {606--615}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2021.3139048}, doi = {10.1109/TCBB.2021.3139048}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/WuLCSH23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/WuM23, author = {Wenming Wu and Xiaoke Ma}, title = {Network-Based Structural Learning Nonnegative Matrix Factorization Algorithm for Clustering of scRNA-Seq Data}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {566--575}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3161131}, doi = {10.1109/TCBB.2022.3161131}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/WuM23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/WuTSX23, author = {Tianyu Wu and Yang Tang and Qiyu Sun and Luolin Xiong}, title = {Molecular Joint Representation Learning via Multi-Modal Information of {SMILES} and Graphs}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {3044--3055}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3253862}, doi = {10.1109/TCBB.2023.3253862}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/WuTSX23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/WuW00WL23, author = {Kaitao Wu and Lexiang Wang and Bo Liu and Yang Liu and Yadong Wang and Junyi Li}, title = {{PSPGO:} Cross-Species Heterogeneous Network Propagation for Protein Function Prediction}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {1713--1724}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3215257}, doi = {10.1109/TCBB.2022.3215257}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/WuW00WL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/WuZHM23, author = {Wenming Wu and Wensheng Zhang and Weimin Hou and Xiaoke Ma}, title = {Multi-View Clustering With Graph Learning for scRNA-Seq Data}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3535--3546}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3298334}, doi = {10.1109/TCBB.2023.3298334}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/WuZHM23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/XiZGL023, author = {Wen{-}Yu Xi and Feng Zhou and Ying{-}Lian Gao and Jin{-}Xing Liu and Chun{-}Hou Zheng}, title = {{LDCMFC:} Predicting Long Non-Coding {RNA} and Disease Association Using Collaborative Matrix Factorization Based on Correntropy}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {1774--1782}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3215194}, doi = {10.1109/TCBB.2022.3215194}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/XiZGL023.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/XuDZLJZWQ23, author = {Wuli Xu and Lei Duan and Huiru Zheng and Jesse Li{-}Ling and Weipeng Jiang and Yidan Zhang and Tingting Wang and Ruiqi Qin}, title = {An Integrative Disease Information Network Approach to Similar Disease Detection}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {2724--2735}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2021.3110127}, doi = {10.1109/TCBB.2021.3110127}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/XuDZLJZWQ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/XuXWZX23, author = {Xiaolong Xu and Haoyan Xu and Liying Wang and Yuanyuan Zhang and Fu Xiao}, title = {Hygeia: {A} Multilabel Deep Learning-Based Classification Method for Imbalanced Electrocardiogram Data}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {4}, pages = {2480--2493}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3176905}, doi = {10.1109/TCBB.2022.3176905}, timestamp = {Mon, 21 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/XuXWZX23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/XuYL023, author = {Jie Xu and Guanxue Yang and Guohai Liu and Hui Liu}, title = {Inferring Gene Regulatory Networks via Ensemble Path Consistency Algorithm Based on Conditional Mutual Information}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {1807--1816}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3220581}, doi = {10.1109/TCBB.2022.3220581}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/XuYL023.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/XuanZCZJZN23, author = {Ping Xuan and Yue Zhao and Hui Cui and Linyun Zhan and Qiangguo Jin and Tiangang Zhang and Toshiya Nakaguchi}, title = {Semantic Meta-Path Enhanced Global and Local Topology Learning for lncRNA-Disease Association Prediction}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1480--1491}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3209571}, doi = {10.1109/TCBB.2022.3209571}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/XuanZCZJZN23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/YanGJZ23, author = {Ke Yan and Xinlu Guo and Zhiwei Ji and Xiaokang Zhou}, title = {Deep Transfer Learning for Cross-Species Plant Disease Diagnosis Adapting Mixed Subdomains}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {4}, pages = {2555--2564}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2021.3135882}, doi = {10.1109/TCBB.2021.3135882}, timestamp = {Fri, 18 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/YanGJZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/YanLWGXL23, author = {Ke Yan and Hongwu Lv and Jie Wen and Yichen Guo and Yong Xu and Bin Liu}, title = {PreTP-Stack: Prediction of Therapeutic Peptides Based on the Stacked Ensemble Learing}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1337--1344}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3183018}, doi = {10.1109/TCBB.2022.3183018}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/YanLWGXL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/YangFYW23, author = {Chengzhuan Yang and Lincong Fang and Qian Yu and Hui Wei}, title = {A Learning Robust and Discriminative Shape Descriptor for Plant Species Identification}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {39--51}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3148463}, doi = {10.1109/TCBB.2022.3148463}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/YangFYW23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/YangHHCL23, author = {Cheng{-}Hong Yang and Hsiu{-}Chen Huang and Ming{-}Feng Hou and Li{-}Yeh Chuang and Yu{-}Da Lin}, title = {Fuzzy-Based Multiobjective Multifactor Dimensionality Reduction for Epistasis Analysis}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {378--387}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3144303}, doi = {10.1109/TCBB.2022.3144303}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/YangHHCL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/YangLCXDD23, author = {Jing Yang and Zhengshu Lu and Xu Chen and Deling Xu and Dewu Ding and Yanrui Ding}, title = {GCNA-Cluster: {A} Gene Co-Expression Network Alignment to Cluster Cancer Patients Algorithm for Identifying Subtypes of Pancreatic Ductal Adenocarcinoma}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3556--3566}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3300102}, doi = {10.1109/TCBB.2023.3300102}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/YangLCXDD23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/YangNLSLZZ23, author = {Xixi Yang and Zhangming Niu and Yuansheng Liu and Bosheng Song and Weiqiang Lu and Li Zeng and Xiangxiang Zeng}, title = {Modality-DTA: Multimodality Fusion Strategy for Drug-Target Affinity Prediction}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1200--1210}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3205282}, doi = {10.1109/TCBB.2022.3205282}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/YangNLSLZZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/YangXLFZGS23, author = {Xiaohui Yang and Zi{-}Jun Xi and Jie{-}Ping Li and Xin{-}Lei Feng and Xiao{-}Hong Zhu and Si{-}Yi Guo and Chun{-}Peng Song}, title = {Deep Transfer Learning-Based Multi-Object Detection for Plant Stomata Phenotypic Traits Intelligent Recognition}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {321--329}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2021.3137810}, doi = {10.1109/TCBB.2021.3137810}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/YangXLFZGS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/YangYC23, author = {Xinxing Yang and Genke Yang and Jian Chu}, title = {The Neural Metric Factorization for Computational Drug Repositioning}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {731--741}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3144429}, doi = {10.1109/TCBB.2022.3144429}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/YangYC23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/YangYC23a, author = {Xinxing Yang and Genke Yang and Jian Chu}, title = {The Computational Drug Repositioning Without Negative Sampling}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1506--1517}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3212051}, doi = {10.1109/TCBB.2022.3212051}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/YangYC23a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/YangYC23b, author = {Xinxing Yang and Genke Yang and Jian Chu}, title = {Self-Supervised Learning for Label Sparsity in Computational Drug Repositioning}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {3245--3256}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3254163}, doi = {10.1109/TCBB.2023.3254163}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/YangYC23b.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/YangZCYLLC23, author = {Jingbo Yang and Denan Zhang and Yiyang Cai and Kexin Yu and Mingming Li and Lei Liu and Xiujie Chen}, title = {Computational Prediction of Drug Phenotypic Effects Based on Substructure-Phenotype Associations}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {256--265}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3155453}, doi = {10.1109/TCBB.2022.3155453}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/YangZCYLLC23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/YaoF23, author = {Yin Yao and Martin C. Frith}, title = {Improved DNA-Versus-Protein Homology Search for Protein Fossils}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {1691--1699}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3177855}, doi = {10.1109/TCBB.2022.3177855}, timestamp = {Thu, 27 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/YaoF23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/YeZL23, author = {Qing Ye and Xiaolong Zhang and Xiaoli Lin}, title = {Drug-Target Interaction Prediction via Graph Auto-Encoder and Multi-Subspace Deep Neural Networks}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {2647--2658}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3206907}, doi = {10.1109/TCBB.2022.3206907}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/YeZL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/YuPLZZZ23, author = {Zhong{-}Ze Yu and Chunxiang Peng and Jun Liu and Biao Zhang and Xiao{-}Gen Zhou and Gui{-}Jun Zhang}, title = {DomBpred: Protein Domain Boundary Prediction Based on Domain-Residue Clustering Using Inter-Residue Distance}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {912--922}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3175905}, doi = {10.1109/TCBB.2022.3175905}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/YuPLZZZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/YuQYWS23, author = {Chunjiang Yu and Xin Qi and Wenying Yan and Wentao Wu and Bairong Shen}, title = {Next-Generation Sequencing Markup Language {(NGSML):} {A} Medium for the Representation and Exchange of {NGS} Data}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {576--585}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3144170}, doi = {10.1109/TCBB.2022.3144170}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/YuQYWS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/YuZHCY23, author = {Qiang Yu and Xiao Zhang and Yana Hu and Shengpin Chen and Liying Yang}, title = {A Method for Predicting {DNA} Motif Length Based On Deep Learning}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {61--73}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3158471}, doi = {10.1109/TCBB.2022.3158471}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/YuZHCY23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/YueXCWLZ23, author = {Zhenyu Yue and Ying Xiang and Guojun Chen and Xiaosong Wang and Ke Li and Youhua Zhang}, title = {PredinID: Predicting Pathogenic Inframe Indels in Human Through Graph Convolution Neural Network With Graph Sampling Technique}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {3226--3233}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3266232}, doi = {10.1109/TCBB.2023.3266232}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/YueXCWLZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ZahariasSW23, author = {Paul Zaharias and Vladimir Smirnov and Tandy J. Warnow}, title = {Large-Scale Multiple Sequence Alignment and the Maximum Weight Trace Alignment Merging Problem}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {1700--1712}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3191848}, doi = {10.1109/TCBB.2022.3191848}, timestamp = {Thu, 27 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ZahariasSW23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ZamanIJS23, author = {Ahmed Bin Zaman and Toki Tahmid Inan and Kenneth A. De Jong and Amarda Shehu}, title = {Adaptive Stochastic Optimization to Improve Protein Conformation Sampling}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {2759--2771}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2021.3134103}, doi = {10.1109/TCBB.2021.3134103}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ZamanIJS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ZhangFSXLG23, author = {Huizhe Zhang and Juntao Fang and Yuping Sun and Guobo Xie and Zhiyi Lin and Guosheng Gu}, title = {Predicting miRNA-Disease Associations via Node-Level Attention Graph Auto-Encoder}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1308--1318}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3170843}, doi = {10.1109/TCBB.2022.3170843}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ZhangFSXLG23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ZhangGLXC23, author = {Zhiming Zhang and Shangce Gao and Zhenyu Lei and Runqun Xiong and Jiujun Cheng}, title = {Pareto Dominance Archive and Coordinated Selection Strategy-Based Many-Objective Optimizer for Protein Structure Prediction}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {2328--2340}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3247025}, doi = {10.1109/TCBB.2023.3247025}, timestamp = {Fri, 22 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/ZhangGLXC23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ZhangGLYSY23, author = {Ying Zhang and Fang Ge and Fuyi Li and Xibei Yang and Jiangning Song and Dong{-}Jun Yu}, title = {Prediction of Multiple Types of {RNA} Modifications via Biological Language Model}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {3205--3214}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3283985}, doi = {10.1109/TCBB.2023.3283985}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ZhangGLYSY23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ZhangJ23, author = {Shengli Zhang and Yuanyuan Jing}, title = {PreVFs-RG: {A} Deep Hybrid Model for Identifying Virulence Factors Based on Residual Block and Gated Recurrent Unit}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {1926--1934}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3223038}, doi = {10.1109/TCBB.2022.3223038}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ZhangJ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ZhangL23, author = {Wenxiang Zhang and Bin Liu}, title = {iSnoDi-MDRF: Identifying snoRNA-Disease Associations Based on Multiple Biological Data by Ranking Framework}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {3013--3019}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3258448}, doi = {10.1109/TCBB.2023.3258448}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ZhangL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ZhangLJFLZY23, author = {Baoquan Zhang and Chuyao Luo and Hao Jiang and Shanshan Feng and Xutao Li and Bowen Zhang and Yunming Ye}, title = {Adaptive Transfer of Graph Neural Networks for Few-Shot Molecular Property Prediction}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3863--3875}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3327452}, doi = {10.1109/TCBB.2023.3327452}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/ZhangLJFLZY23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ZhangSXCWWYSL23, author = {Hao Zhang and Honglei Song and Xiaoming Xu and Qixin Chang and Mingkai Wang and Yanjie Wei and Zekun Yin and Bertil Schmidt and Weiguo Liu}, title = {RabbitFX: Efficient Framework for {FASTA/Q} File Parsing on Modern Multi-Core Platforms}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {2341--2348}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3219114}, doi = {10.1109/TCBB.2022.3219114}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ZhangSXCWWYSL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ZhangWLZLWL23, author = {Xiaoshuai Zhang and Lixin Wang and Hucheng Liu and Xiaofeng Zhang and Bo Liu and Yadong Wang and Junyi Li}, title = {Prot2GO: Predicting {GO} Annotations From Protein Sequences and Interactions}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {2772--2780}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2021.3139841}, doi = {10.1109/TCBB.2021.3139841}, timestamp = {Wed, 15 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ZhangWLZLWL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ZhangXJQCQLW23, author = {Yuanpeng Zhang and Kaijian Xia and Yizhang Jiang and Pengjiang Qian and Weiwei Cai and Chengyu Qiu and Khin Wee Lai and Dongrui Wu}, title = {Multi-Modality Fusion {\&} Inductive Knowledge Transfer Underlying Non-Sparse Multi-Kernel Learning and Distribution Adaption}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {4}, pages = {2387--2397}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3142748}, doi = {10.1109/TCBB.2022.3142748}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ZhangXJQCQLW23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ZhangXWWYYGFH23, author = {Qinhu Zhang and Youhong Xu and Siguo Wang and Yong Wu and Yuannong Ye and Chang{-}An Yuan and Valeriya V. Gribova and Vladimir Fedorovich Filaretov and De{-}Shuang Huang}, title = {Using Fully Convolutional Network to Locate Transcription Factor Binding Sites Based on {DNA} Sequence and Conservation Information}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {2690--2699}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3219831}, doi = {10.1109/TCBB.2022.3219831}, timestamp = {Sat, 28 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ZhangXWWYYGFH23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ZhangYXGZ23, author = {Hao Zhang and Chuanxu Yan and Yewei Xia and Jihong Guan and Shuigeng Zhou}, title = {Causal Gene Identification Using Non-Linear Regression-Based Independence Tests}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {185--195}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3149864}, doi = {10.1109/TCBB.2022.3149864}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ZhangYXGZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ZhangZLH23, author = {Han Zhang and Zexuan Zhu and Hui Li and Shan He}, title = {Network Biomarker Detection From Gene Co-Expression Network Using Gaussian Mixture Model Clustering}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3523--3534}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3297388}, doi = {10.1109/TCBB.2023.3297388}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/ZhangZLH23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ZhangZLY23, author = {Jian Zhang and Feng Zhou and Xingchen Liang and Guifu Yang}, title = {{SCAMPER:} Accurate Type-Specific Prediction of Calcium-Binding Residues Using Sequence-Derived Features}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1406--1416}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3173437}, doi = {10.1109/TCBB.2022.3173437}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ZhangZLY23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ZhangZZCLZ23, author = {Fan Zhang and Yawei Zhang and Xiaoke Zhu and Xiaopan Chen and Fuhao Lu and Xinhong Zhang}, title = {DeepSG2PPI: {A} Protein-Protein Interaction Prediction Method Based on Deep Learning}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {2907--2919}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3268661}, doi = {10.1109/TCBB.2023.3268661}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ZhangZZCLZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ZhaoBLZROX23, author = {Bo Zhao and Jun Bai and Chen Li and Jianfei Zhang and Wenge Rong and Yuanxin Ouyang and Zhang Xiong}, title = {Enhancing Biomedical ReQA With Adversarial Hard In-Batch Negative Samples}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {2933--2944}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3261315}, doi = {10.1109/TCBB.2023.3261315}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ZhaoBLZROX23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ZhaoDNYLW23, author = {Haochen Zhao and Guihua Duan and Peng Ni and Cheng Yan and Yaohang Li and Jianxin Wang}, title = {RNPredATC: {A} Deep Residual Learning-Based Model With Applications to the Prediction of Drug-ATC Code Association}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {2712--2723}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2021.3088256}, doi = {10.1109/TCBB.2021.3088256}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ZhaoDNYLW23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ZhaoDYCLW23, author = {Qichang Zhao and Guihua Duan and Mengyun Yang and Zhongjian Cheng and Yaohang Li and Jianxin Wang}, title = {AttentionDTA: Drug-Target Binding Affinity Prediction by Sequence-Based Deep Learning With Attention Mechanism}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {852--863}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3170365}, doi = {10.1109/TCBB.2022.3170365}, timestamp = {Mon, 01 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ZhaoDYCLW23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ZhaoDZLDW23, author = {Haochen Zhao and Ruihong Du and Ruikang Zhou and Suning Li and Guihua Duan and Jianxin Wang}, title = {{SCN-MLTPP:} {A} Multi-Label Classifier for Predicting Therapeutic Properties of Peptides Using the Stacked Capsule Network}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3715--3724}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3315330}, doi = {10.1109/TCBB.2023.3315330}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/ZhaoDZLDW23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ZhaoDZZL023, author = {Qichang Zhao and Guihua Duan and Haochen Zhao and Kai Zheng and Yaohang Li and Jianxin Wang}, title = {{GIFDTI:} Prediction of Drug-Target Interactions Based on Global Molecular and Intermolecular Interaction Representation Learning}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {1943--1952}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3225423}, doi = {10.1109/TCBB.2022.3225423}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ZhaoDZZL023.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ZhaoLYNZ23, author = {Huan Zhao and Zhengwei Li and Zhu{-}Hong You and Ru Nie and Tangbo Zhong}, title = {Predicting Mirna-Disease Associations Based on Neighbor Selection Graph Attention Networks}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1298--1307}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3204726}, doi = {10.1109/TCBB.2022.3204726}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/ZhaoLYNZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ZhaoLZZ23, author = {Qing Zhao and Jianqiang Li and Linna Zhao and Zhichao Zhu}, title = {Knowledge Guided Feature Aggregation for the Prediction of Chronic Obstructive Pulmonary Disease With Chinese EMRs}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3343--3352}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3198798}, doi = {10.1109/TCBB.2022.3198798}, timestamp = {Tue, 30 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/ZhaoLZZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ZhaoSSHG23, author = {Hongfei Zhao and Cunqi Shao and Zhiguo Shi and Shibo He and Zhefeng Gong}, title = {The Intrinsic Similarity of Topological Structure in Biological Neural Networks}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {3292--3305}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3279443}, doi = {10.1109/TCBB.2023.3279443}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ZhaoSSHG23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ZhaoYJHSH23, author = {Weizhong Zhao and Wenjie Yao and Xingpeng Jiang and Tingting He and Chuan Shi and Xiaohua Hu}, title = {An Explainable Framework for Predicting Drug-Side Effect Associations via Meta-Path-Based Feature Learning in Heterogeneous Information Network}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3635--3647}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3308094}, doi = {10.1109/TCBB.2023.3308094}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/ZhaoYJHSH23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ZhaoYY023, author = {Minghua Zhao and Min Yuan and Yaning Yang and Steven X. Xu}, title = {{CPGL:} Prediction of Compound-Protein Interaction by Integrating Graph Attention Network With Long Short-Term Memory Neural Network}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {3}, pages = {1935--1942}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3225296}, doi = {10.1109/TCBB.2022.3225296}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ZhaoYY023.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ZhengCWWZ23, author = {Yanfen Zheng and Ben Cao and Jieqiong Wu and Bin Wang and Qiang Zhang}, title = {High Net Information Density {DNA} Data Storage by the {MOPE} Encoding Algorithm}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {2992--3000}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3263521}, doi = {10.1109/TCBB.2023.3263521}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ZhengCWWZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ZhengSZ23, author = {Vicky Zheng and Ahmet Erdem Sariy{\"{u}}ce and Jaroslaw Zola}, title = {Identifying Taxonomic Units in Metagenomic {DNA} Streams on Mobile Devices}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1092--1103}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3172661}, doi = {10.1109/TCBB.2022.3172661}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/ZhengSZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ZhouLLTWH23, author = {Xingxing Zhou and Ming Ling and Qingde Lin and Shidi Tang and Jiansheng Wu and Haifeng Hu}, title = {Effectiveness Analysis of Multiple Initial States Simulated Annealing Algorithm, a Case Study on the Molecular Docking Tool AutoDock Vina}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {6}, pages = {3830--3841}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3323552}, doi = {10.1109/TCBB.2023.3323552}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/ZhouLLTWH23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ZhouYZSL23, author = {Feng Zhou and Meng{-}Meng Yin and Jing{-}Xiu Zhao and Junliang Shang and Jin{-}Xing Liu}, title = {A Method Based On Dual-Network Information Fusion to Predict MiRNA-Disease Associations}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {1}, pages = {52--60}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2021.3133006}, doi = {10.1109/TCBB.2021.3133006}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ZhouYZSL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ZhuL23, author = {Xinyu Zhu and Weiming Lu}, title = {Multi-Label Classification With Dual Tail-Node Augmentation for Drug Repositioning}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {3068--3079}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3292883}, doi = {10.1109/TCBB.2023.3292883}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ZhuL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ZhuLJLYYHZ23, author = {Xianyu Zhu and Jinjiang Li and Runchang Jia and Bin Liu and Zhuohan Yao and Aihong Yuan and Yingqiu Huo and Haixi Zhang}, title = {LAD-Net: {A} Novel Light Weight Model for Early Apple Leaf Pests and Diseases Classification}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {2}, pages = {1156--1169}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2022.3191854}, doi = {10.1109/TCBB.2022.3191854}, timestamp = {Sat, 29 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ZhuLJLYYHZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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