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@article{DBLP:journals/jcb/AdamiakBFGKPS04,
author = {Ryszard W. Adamiak and
Jacek Blazewicz and
Piotr Formanowicz and
Zofia Gdaniec and
Marta Kasprzak and
Mariusz Popenda and
Marta Szachniuk},
title = {An Algorithm for an Automatic {NOE} Pathways Analysis of 2D {NMR}
Spectra of {RNA} Duplexes},
journal = {J. Comput. Biol.},
volume = {11},
number = {1},
pages = {163--179},
year = {2004},
url = {https://doi.org/10.1089/106652704773416948},
doi = {10.1089/106652704773416948},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/AdamiakBFGKPS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Akutsu04,
author = {Tatsuya Akutsu},
title = {Efficient Extraction of Mapping Rules of Atoms from Enzymatic Reaction
Data},
journal = {J. Comput. Biol.},
volume = {11},
number = {2/3},
pages = {449--462},
year = {2004},
url = {https://doi.org/10.1089/1066527041410337},
doi = {10.1089/1066527041410337},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/Akutsu04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/AlkanEBST04,
author = {Can Alkan and
Evan E. Eichler and
Jeffrey A. Bailey and
S{\"{u}}leyman Cenk Sahinalp and
Eray T{\"{u}}z{\"{u}}n},
title = {The Role of Unequal Crossover in Alpha-Satellite {DNA} Evolution:
{A} Computational Analysis},
journal = {J. Comput. Biol.},
volume = {11},
number = {5},
pages = {933--944},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.933},
doi = {10.1089/CMB.2004.11.933},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/AlkanEBST04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ApostolicoP04,
author = {Alberto Apostolico and
Laxmi Parida},
title = {Incremental Paradigms of Motif Discovery},
journal = {J. Comput. Biol.},
volume = {11},
number = {1},
pages = {15--25},
year = {2004},
url = {https://doi.org/10.1089/106652704773416867},
doi = {10.1089/106652704773416867},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ApostolicoP04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BafnaGHY04,
author = {Vineet Bafna and
Dan Gusfield and
Sridhar Hannenhalli and
Shibu Yooseph},
title = {A Note on Efficient Computation of Haplotypes via Perfect Phylogeny},
journal = {J. Comput. Biol.},
volume = {11},
number = {5},
pages = {858--866},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.858},
doi = {10.1089/CMB.2004.11.858},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/BafnaGHY04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Barash04,
author = {Danny Barash},
title = {Spectral Decomposition for the Search and Analysis of {RNA} Secondary
Structure},
journal = {J. Comput. Biol.},
volume = {11},
number = {6},
pages = {1169--1174},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.1169},
doi = {10.1089/CMB.2004.11.1169},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/Barash04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BayCPS04,
author = {Stephen D. Bay and
Lonnie Chrisman and
Andrew Pohorille and
Jeff Shrager},
title = {Temporal Aggregation Bias and Inference of Causal Regulatory Networks},
journal = {J. Comput. Biol.},
volume = {11},
number = {5},
pages = {971--985},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.971},
doi = {10.1089/CMB.2004.11.971},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/BayCPS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BejeranoFT04,
author = {Gill Bejerano and
Nir Friedman and
Naftali Tishby},
title = {Efficient Exact p-Value Computation for Small Sample, Sparse, and
Surprising Categorical Data},
journal = {J. Comput. Biol.},
volume = {11},
number = {5},
pages = {867--886},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.867},
doi = {10.1089/CMB.2004.11.867},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/BejeranoFT04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Ben-DorHKSSY04,
author = {Amir Ben{-}Dor and
Tzvika Hartman and
Richard M. Karp and
Benno Schwikowski and
Roded Sharan and
Zohar Yakhini},
title = {Towards Optimally Multiplexed Applications of Universal Arrays},
journal = {J. Comput. Biol.},
volume = {11},
number = {2/3},
pages = {476--492},
year = {2004},
url = {https://doi.org/10.1089/1066527041410373},
doi = {10.1089/1066527041410373},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/Ben-DorHKSSY04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BenhamB04,
author = {Craig J. Benham and
Chengpeng Bi},
title = {The Analysis of Stress-Induced Duplex Destabilization in Long Genomic
{DNA} Sequences},
journal = {J. Comput. Biol.},
volume = {11},
number = {4},
pages = {519--543},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.519},
doi = {10.1089/CMB.2004.11.519},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/BenhamB04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BergemannLQZ04,
author = {Tracy L. Bergemann and
Richard J. Laws and
Filemon Quiaoit and
Lue Ping Zhao},
title = {A Statistically Driven Approach for Image Segmentation and Signal
Extraction in cDNA Microarrays},
journal = {J. Comput. Biol.},
volume = {11},
number = {4},
pages = {695--713},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.695},
doi = {10.1089/CMB.2004.11.695},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/BergemannLQZ04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BermanBDGKS04,
author = {Piotr Berman and
Paul Bertone and
Bhaskar DasGupta and
Mark Gerstein and
Ming{-}Yang Kao and
Michael Snyder},
title = {Fast Optimal Genome Tiling with Applications to Microarray Design
and Homology Search},
journal = {J. Comput. Biol.},
volume = {11},
number = {4},
pages = {766--785},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.766},
doi = {10.1089/CMB.2004.11.766},
timestamp = {Mon, 15 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/BermanBDGKS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BhattacharyyaGJGM04,
author = {Chiranjib Bhattacharyya and
L. R. Grate and
Michael I. Jordan and
Laurent El Ghaoui and
I. Saira Mian},
title = {Robust Sparse Hyperplane Classifiers: Application to Uncertain Molecular
Profiling Data},
journal = {J. Comput. Biol.},
volume = {11},
number = {6},
pages = {1073--1089},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.1073},
doi = {10.1089/CMB.2004.11.1073},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/BhattacharyyaGJGM04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Bocker04,
author = {Sebastian B{\"{o}}cker},
title = {Sequencing from Compomers: Using Mass Spectrometry for {DNA} de novo
Sequencing of 200+ nt},
journal = {J. Comput. Biol.},
volume = {11},
number = {6},
pages = {1110--1134},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.1110},
doi = {10.1089/CMB.2004.11.1110},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/Bocker04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BoothMWG04,
author = {Hilary S. Booth and
John H. Maindonald and
Susan R. Wilson and
Jill E. Gready},
title = {An Efficient Z-Score Algorithm for Assessing Sequence Alignments},
journal = {J. Comput. Biol.},
volume = {11},
number = {4},
pages = {616--625},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.616},
doi = {10.1089/CMB.2004.11.616},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/BoothMWG04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/CapraraCILW04,
author = {Alberto Caprara and
Robert D. Carr and
Sorin Istrail and
Giuseppe Lancia and
Brian Walenz},
title = {1001 Optimal {PDB} Structure Alignments: Integer Programming Methods
for Finding the Maximum Contact Map Overlap},
journal = {J. Comput. Biol.},
volume = {11},
number = {1},
pages = {27--52},
year = {2004},
url = {https://doi.org/10.1089/106652704773416876},
doi = {10.1089/106652704773416876},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/CapraraCILW04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Cheung04,
author = {Leo Wang{-}Kit Cheung},
title = {Use of Runs Statistics for Pattern Recognition in Genomic {DNA} Sequences},
journal = {J. Comput. Biol.},
volume = {11},
number = {1},
pages = {107--124},
year = {2004},
url = {https://doi.org/10.1089/106652704773416911},
doi = {10.1089/106652704773416911},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/Cheung04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ChiappettaRT04,
author = {Pierre Chiappetta and
Marie{-}Christine Roubaud and
Bruno Torr{\'{e}}sani},
title = {Blind Source Separation and the Analysis of Microarray Data},
journal = {J. Comput. Biol.},
volume = {11},
number = {6},
pages = {1090--1109},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.1090},
doi = {10.1089/CMB.2004.11.1090},
timestamp = {Fri, 15 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/ChiappettaRT04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/CominGZ04,
author = {Matteo Comin and
Concettina Guerra and
Giuseppe Zanotti},
title = {PROuST: {A} Comparison Method of Three-Dimensional Structures of Proteins
Using Indexing Techniques},
journal = {J. Comput. Biol.},
volume = {11},
number = {6},
pages = {1061--1072},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.1061},
doi = {10.1089/CMB.2004.11.1061},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/CominGZ04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Conklin04,
author = {Darrell Conklin},
title = {Recognition of the Helical Cytokine Fold},
journal = {J. Comput. Biol.},
volume = {11},
number = {6},
pages = {1189--1200},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.1189},
doi = {10.1089/CMB.2004.11.1189},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/Conklin04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/CsurosM04,
author = {Mikl{\'{o}}s Cs{\"{u}}r{\"{o}}s and
Aleksandar Milosavljevic},
title = {Pooled Genomic Indexing {(PGI):} Analysis and Design of Experiments},
journal = {J. Comput. Biol.},
volume = {11},
number = {5},
pages = {1001--1021},
year = {2004},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/CsurosM04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/DejoriS04,
author = {Math{\"{a}}us Dejori and
Martin Stetter},
title = {Identifying Interventional and Pathogenic Mechanisms by Generative
Inverse Modeling of Gene Expression Profiles},
journal = {J. Comput. Biol.},
volume = {11},
number = {6},
pages = {1135--1148},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.1135},
doi = {10.1089/CMB.2004.11.1135},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/DejoriS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/DengCS04,
author = {Minghua Deng and
Ting Chen and
Fengzhu Sun},
title = {An Integrated Probabilistic Model for Functional Prediction of Proteins},
journal = {J. Comput. Biol.},
volume = {11},
number = {2/3},
pages = {463--475},
year = {2004},
url = {https://doi.org/10.1089/1066527041410346},
doi = {10.1089/1066527041410346},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/DengCS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/EresLP04,
author = {Revital Eres and
Gad M. Landau and
Laxmi Parida},
title = {Permutation Pattern Discovery in Biosequences},
journal = {J. Comput. Biol.},
volume = {11},
number = {6},
pages = {1050--1060},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.1050},
doi = {10.1089/CMB.2004.11.1050},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/EresLP04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/FigueroaBJ04,
author = {Andres Figueroa and
James Borneman and
Tao Jiang},
title = {Clustering Binary Fingerprint Vectors with Missing Values for {DNA}
Array Data Analysis},
journal = {J. Comput. Biol.},
volume = {11},
number = {5},
pages = {887--901},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.887},
doi = {10.1089/CMB.2004.11.887},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/FigueroaBJ04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/FishelsonG04,
author = {Ma{\'{a}}yan Fishelson and
Dan Geiger},
title = {Optimizing Exact Genetic Linkage Computations},
journal = {J. Comput. Biol.},
volume = {11},
number = {2/3},
pages = {263--275},
year = {2004},
url = {https://doi.org/10.1089/1066527041410409},
doi = {10.1089/1066527041410409},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/FishelsonG04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/GaltierJ04,
author = {Nicolas Galtier and
Alain Jean{-}Marie},
title = {Markov-Modulated Markov Chains and the Covarion Process of Molecular
Evolution},
journal = {J. Comput. Biol.},
volume = {11},
number = {4},
pages = {727--733},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.727},
doi = {10.1089/CMB.2004.11.727},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/GaltierJ04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Gat-ViksTS04,
author = {Irit Gat{-}Viks and
Amos Tanay and
Ron Shamir},
title = {Modeling and Analysis of Heterogeneous Regulation in Biological Networks},
journal = {J. Comput. Biol.},
volume = {11},
number = {6},
pages = {1034--1049},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.1034},
doi = {10.1089/CMB.2004.11.1034},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/Gat-ViksTS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/GeE04,
author = {Nanxiang Ge and
Charles B. Epstein},
title = {An Empirical Bayesian Significance Test of cDNA Library Data},
journal = {J. Comput. Biol.},
volume = {11},
number = {6},
pages = {1175--1188},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.1175},
doi = {10.1089/CMB.2004.11.1175},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/GeE04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/GiurcarneanuTAOV04,
author = {Ciprian Doru Giurcaneanu and
Ioan Tabus and
Jaakko Astola and
Juha Ollila and
Mauno Vihinen},
title = {Fast Iterative Gene Clustering Based on Information Theoretic Criteria
for Selecting the Cluster Structure},
journal = {J. Comput. Biol.},
volume = {11},
number = {4},
pages = {660--682},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.660},
doi = {10.1089/CMB.2004.11.660},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/GiurcarneanuTAOV04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/GreenspanG04,
author = {Gideon Greenspan and
Dan Geiger},
title = {Model-Based Inference of Haplotype Block Variation},
journal = {J. Comput. Biol.},
volume = {11},
number = {2/3},
pages = {493--504},
year = {2004},
url = {https://doi.org/10.1089/1066527041410300},
doi = {10.1089/1066527041410300},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/GreenspanG04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/HegerLH04,
author = {Andreas Heger and
Michael Lappe and
Liisa Holm},
title = {Accurate Detection of Very Sparse Sequence Motifs},
journal = {J. Comput. Biol.},
volume = {11},
number = {5},
pages = {843--857},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.843},
doi = {10.1089/CMB.2004.11.843},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/HegerLH04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/HelmanVAW04,
author = {Paul Helman and
Robert Veroff and
Susan R. Atlas and
Cheryl Willman},
title = {A Bayesian Network Classification Methodology for Gene Expression
Data},
journal = {J. Comput. Biol.},
volume = {11},
number = {4},
pages = {581--615},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.581},
doi = {10.1089/CMB.2004.11.581},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/HelmanVAW04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/HuangKZLW04,
author = {Haiyan Huang and
Ming{-}Chih J. Kao and
Xianghong Jasmine Zhou and
Jun S. Liu and
Wing Hung Wong},
title = {Determination of Local Statistical Significance of Patterns in Markov
Sequences with Application to Promoter Element Identification},
journal = {J. Comput. Biol.},
volume = {11},
number = {1},
pages = {1--14},
year = {2004},
url = {https://doi.org/10.1089/106652704773416858},
doi = {10.1089/106652704773416858},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/HuangKZLW04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/JanesKGASL04,
author = {Kevin A. Janes and
Jason R. Kelly and
Suzanne Gaudet and
John G. Albeck and
Peter K. Sorger and
Douglas A. Lauffenburger},
title = {Cue-Signal-Response Analysis of TNF-Induced Apoptosis by Partial Least
Squares Regression of Dynamic Multivariate Data},
journal = {J. Comput. Biol.},
volume = {11},
number = {4},
pages = {544--561},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.544},
doi = {10.1089/CMB.2004.11.544},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/JanesKGASL04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/JiaDSB04,
author = {Yuting Jia and
T. Gregory Dewey and
Ilya N. Shindyalov and
Philip E. Bourne},
title = {A New Scoring Function and Associated Statistical Significance for
Structure Alignment by {CE}},
journal = {J. Comput. Biol.},
volume = {11},
number = {5},
pages = {787--799},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.787},
doi = {10.1089/CMB.2004.11.787},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/JiaDSB04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/KahngMPRZ04,
author = {Andrew B. Kahng and
Ion I. Mandoiu and
Pavel A. Pevzner and
Sherief Reda and
Alexander Zelikovsky},
title = {Scalable Heuristics for Design of {DNA} Probe Arrays},
journal = {J. Comput. Biol.},
volume = {11},
number = {2/3},
pages = {429--447},
year = {2004},
url = {https://doi.org/10.1089/1066527041410391},
doi = {10.1089/1066527041410391},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/KahngMPRZ04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/KellisPBBL04,
author = {Manolis Kellis and
Nick Patterson and
Bruce Birren and
Bonnie Berger and
Eric S. Lander},
title = {Methods in Comparative Genomics: Genome Correspondence, Gene Identification
and Regulatory Motif Discovery},
journal = {J. Comput. Biol.},
volume = {11},
number = {2/3},
pages = {319--355},
year = {2004},
url = {https://doi.org/10.1089/1066527041410319},
doi = {10.1089/1066527041410319},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/KellisPBBL04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/KrishnapuramCH04,
author = {Balaji Krishnapuram and
Lawrence Carin and
Alexander J. Hartemink},
title = {Joint Classifier and Feature Optimization for Comprehensive Cancer
Diagnosis Using Gene Expression Data},
journal = {J. Comput. Biol.},
volume = {11},
number = {2/3},
pages = {227--242},
year = {2004},
url = {https://doi.org/10.1089/1066527041410463},
doi = {10.1089/1066527041410463},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/KrishnapuramCH04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/KuFR04,
author = {Jason Ku and
Xiao{-}Jiang Feng and
Herschel Rabitz},
title = {Closed-Loop Learning Control of Bio-Networks},
journal = {J. Comput. Biol.},
volume = {11},
number = {4},
pages = {642--659},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.642},
doi = {10.1089/CMB.2004.11.642},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/KuFR04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/LangmeadYLWD04,
author = {Christopher James Langmead and
Anthony K. Yan and
Ryan H. Lilien and
Lincong Wang and
Bruce Randall Donald},
title = {A Polynomial-Time Nuclear Vector Replacement Algorithm for Automated
{NMR} Resonance Assignments},
journal = {J. Comput. Biol.},
volume = {11},
number = {2/3},
pages = {277--298},
year = {2004},
url = {https://doi.org/10.1089/1066527041410436},
doi = {10.1089/1066527041410436},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/LangmeadYLWD04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/LevyVCLSA04,
author = {Dan Levy and
Mariel V{\'{a}}zquez and
Michael Cornforth and
Bradford Loucas and
Rainer K. Sachs and
Javier Arsuaga},
title = {Comparing {DNA} Damage-Processing Pathways by Computer Analysis of
Chromosome Painting Data},
journal = {J. Comput. Biol.},
volume = {11},
number = {4},
pages = {626--641},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.626},
doi = {10.1089/CMB.2004.11.626},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/LevyVCLSA04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/LiKW04,
author = {Lei M. Li and
Jong Hyun Kim and
Michael S. Waterman},
title = {Haplotype Reconstruction from {SNP} Alignment},
journal = {J. Comput. Biol.},
volume = {11},
number = {2/3},
pages = {505--516},
year = {2004},
url = {https://doi.org/10.1089/1066527041410454},
doi = {10.1089/1066527041410454},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/LiKW04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/LiSG04,
author = {Wentian Li and
Fengzhu Sun and
Ivo Grosse},
title = {Extreme Value Distribution Based Gene Selection Criteria for Discriminant
Microarray Data Analysis Using Logistic Regression},
journal = {J. Comput. Biol.},
volume = {11},
number = {2/3},
pages = {215--226},
year = {2004},
url = {https://doi.org/10.1089/1066527041410445},
doi = {10.1089/1066527041410445},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/LiSG04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/LotanS04,
author = {Itay Lotan and
Fabian Schwarzer},
title = {Approximation of Protein Structure for Fast Similarity Measures},
journal = {J. Comput. Biol.},
volume = {11},
number = {2/3},
pages = {299--317},
year = {2004},
url = {https://doi.org/10.1089/1066527041410355},
doi = {10.1089/1066527041410355},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/LotanS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/LotanSHL04,
author = {Itay Lotan and
Fabian Schwarzer and
Dan Halperin and
Jean{-}Claude Latombe},
title = {Algorithm and Data Structures for Efficient Energy Maintenance during
Monte Carlo Simulation of Proteins},
journal = {J. Comput. Biol.},
volume = {11},
number = {5},
pages = {902--932},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.902},
doi = {10.1089/CMB.2004.11.902},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/LotanSHL04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/MakarenkovL04,
author = {Vladimir Makarenkov and
Pierre Legendre},
title = {From a Phylogenetic Tree to a Reticulated Network},
journal = {J. Comput. Biol.},
volume = {11},
number = {1},
pages = {195--212},
year = {2004},
url = {https://doi.org/10.1089/106652704773416966},
doi = {10.1089/106652704773416966},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/MakarenkovL04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Nuel04,
author = {Gr{\'{e}}gory Nuel},
title = {LD-SPatt: Large Deviations Statistics for Patterns on Markov Chains},
journal = {J. Comput. Biol.},
volume = {11},
number = {6},
pages = {1023--1033},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.1023},
doi = {10.1089/CMB.2004.11.1023},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/Nuel04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/OliveiraJDBG04,
author = {Joseph S. Oliveira and
Janet B. Jones{-}Oliveira and
David A. Dixon and
Colin G. Bailey and
Dean W. Gull},
title = {Hyperdigraph-Theoretic Analysis of the {EGFR} Signaling Network: Initial
Steps Leading to {GTP:} Ras Complex Formation},
journal = {J. Comput. Biol.},
volume = {11},
number = {5},
pages = {812--842},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.812},
doi = {10.1089/CMB.2004.11.812},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/OliveiraJDBG04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/PalazogluGAE04,
author = {Ahmet Palazoglu and
Attila G{\"{u}}rsoy and
Yaman Arkun and
Burak Erman},
title = {Folding Dynamics of Proteins from Denatured to Native State: Principal
Component Analysis},
journal = {J. Comput. Biol.},
volume = {11},
number = {6},
pages = {1149--1168},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.1149},
doi = {10.1089/CMB.2004.11.1149},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/PalazogluGAE04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/PreparataO04,
author = {Franco P. Preparata and
John S. Oliver},
title = {{DNA} Sequencing by Hybridization Using Semi-Degenerate Bases},
journal = {J. Comput. Biol.},
volume = {11},
number = {4},
pages = {753--765},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.753},
doi = {10.1089/CMB.2004.11.753},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/PreparataO04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/RobertsHYBD04,
author = {Michael Roberts and
Brian R. Hunt and
James A. Yorke and
Randall A. Bolanos and
Arthur L. Delcher},
title = {A Preprocessor for Shotgun Assembly of Large Genomes},
journal = {J. Comput. Biol.},
volume = {11},
number = {4},
pages = {734--752},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.734},
doi = {10.1089/CMB.2004.11.734},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/RobertsHYBD04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/RoskinDH04,
author = {Krishna M. Roskin and
Mark Diekhans and
David Haussler},
title = {Score Functions for Determining Regional Conservation in Two-Species
Local Alignments},
journal = {J. Comput. Biol.},
volume = {11},
number = {2/3},
pages = {395--411},
year = {2004},
url = {https://doi.org/10.1089/1066527041410328},
doi = {10.1089/1066527041410328},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/RoskinDH04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ShatkayMMFYS04,
author = {Hagit Shatkay and
Jason R. Miller and
Clark M. Mobarry and
Michael Flanigan and
Shibu Yooseph and
Granger G. Sutton},
title = {ThurGood: Evaluating Assembly-to-Assembly Mapping},
journal = {J. Comput. Biol.},
volume = {11},
number = {5},
pages = {800--811},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.800},
doi = {10.1089/CMB.2004.11.800},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ShatkayMMFYS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ShatskyNW04,
author = {Maxim Shatsky and
Ruth Nussinov and
Haim J. Wolfson},
title = {FlexProt: Alignment of Flexible Protein Structures Without a Predefinition
of Hinge Regions},
journal = {J. Comput. Biol.},
volume = {11},
number = {1},
pages = {83--106},
year = {2004},
url = {https://doi.org/10.1089/106652704773416902},
doi = {10.1089/106652704773416902},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ShatskyNW04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SiepelH04,
author = {Adam C. Siepel and
David Haussler},
title = {Combining Phylogenetic and Hidden Markov Models in Biosequence Analysis},
journal = {J. Comput. Biol.},
volume = {11},
number = {2/3},
pages = {413--428},
year = {2004},
url = {https://doi.org/10.1089/1066527041410472},
doi = {10.1089/1066527041410472},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/SiepelH04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SmithH04,
author = {Kaleigh Smith and
Michael T. Hallett},
title = {Towards Quality Control for {DNA} Microarrays},
journal = {J. Comput. Biol.},
volume = {11},
number = {5},
pages = {945--970},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.945},
doi = {10.1089/CMB.2004.11.945},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/SmithH04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SpiroM04,
author = {Peter A. Spiro and
Natasa Macura},
title = {A Local Alignment Metric for Accelerating Biosequence Database Search},
journal = {J. Comput. Biol.},
volume = {11},
number = {1},
pages = {61--82},
year = {2004},
url = {https://doi.org/10.1089/106652704773416894},
doi = {10.1089/106652704773416894},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/SpiroM04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SungS04,
author = {Myong{-}Hee Sung and
Richard Simon},
title = {Genomewide Conserved Epitope Profiles of {HIV-1} Predicted by Biophysical
Properties of {MHC} Binding Peptides},
journal = {J. Comput. Biol.},
volume = {11},
number = {1},
pages = {125--145},
year = {2004},
url = {https://doi.org/10.1089/106652704773416920},
doi = {10.1089/106652704773416920},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/SungS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/TanayS04,
author = {Amos Tanay and
Ron Shamir},
title = {Multilevel Modeling and Inference of Transcription Regulation},
journal = {J. Comput. Biol.},
volume = {11},
number = {2/3},
pages = {357--375},
year = {2004},
url = {https://doi.org/10.1089/1066527041410364},
doi = {10.1089/1066527041410364},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/TanayS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Wagner04,
author = {Andreas Wagner},
title = {Reconstructing Pathways in Large Genetic Networks from Genetic Perturbations},
journal = {J. Comput. Biol.},
volume = {11},
number = {1},
pages = {53--60},
year = {2004},
url = {https://doi.org/10.1089/106652704773416885},
doi = {10.1089/106652704773416885},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/Wagner04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/WangC04,
author = {Sue{-}Jane Wang and
James J. Chen},
title = {Sample Size for Identifying Differentially Expressed Genes in Microarray
Experiments},
journal = {J. Comput. Biol.},
volume = {11},
number = {4},
pages = {714--726},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.714},
doi = {10.1089/CMB.2004.11.714},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/WangC04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/WistrandS04,
author = {Markus Wistrand and
Erik L. L. Sonnhammer},
title = {Transition Priors for Protein Hidden Markov Models: An Empirical Study
towards Maximum Discrimination},
journal = {J. Comput. Biol.},
volume = {11},
number = {1},
pages = {181--193},
year = {2004},
url = {https://doi.org/10.1089/106652704773416957},
doi = {10.1089/106652704773416957},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/WistrandS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/WuMC04,
author = {Rongling Wu and
Chang{-}Xing Ma and
George Casella},
title = {A Mixed Polyploid Model for Linkage Analysis in Outcrossing Tetraploids
Using a Pseudo-Test Backcross Design},
journal = {J. Comput. Biol.},
volume = {11},
number = {4},
pages = {562--580},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.562},
doi = {10.1089/CMB.2004.11.562},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/WuMC04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/YeJ04,
author = {Jieping Ye and
Ravi Janardan},
title = {Approximate Multiple Protein Structure Alignment Using the Sum-of-Pairs
Distance},
journal = {J. Comput. Biol.},
volume = {11},
number = {5},
pages = {986--1000},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.986},
doi = {10.1089/CMB.2004.11.986},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/YeJ04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/YeangIJ04,
author = {Chen{-}Hsiang Yeang and
Trey Ideker and
Tommi S. Jaakkola},
title = {Physical Network Models},
journal = {J. Comput. Biol.},
volume = {11},
number = {2/3},
pages = {243--262},
year = {2004},
url = {https://doi.org/10.1089/1066527041410382},
doi = {10.1089/1066527041410382},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/YeangIJ04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/YeoB04,
author = {Gene W. Yeo and
Christopher B. Burge},
title = {Maximum Entropy Modeling of Short Sequence Motifs with Applications
to {RNA} Splicing Signals},
journal = {J. Comput. Biol.},
volume = {11},
number = {2/3},
pages = {377--394},
year = {2004},
url = {https://doi.org/10.1089/1066527041410418},
doi = {10.1089/1066527041410418},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/YeoB04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ZhihuaYBBL04,
author = {Zhihua Lin and
Yuzhang Wu and
Bo Zhu and
Bing Ni and
Li Wang},
title = {Toward the Quantitative Prediction of T-Cell Epitopes: {QSAR} Studies
on Peptides Having Affinity with the Class {I} {MHC} Molecular HLA-A\({}_{\mbox{*}}\)0201},
journal = {J. Comput. Biol.},
volume = {11},
number = {4},
pages = {683--694},
year = {2004},
url = {https://doi.org/10.1089/cmb.2004.11.683},
doi = {10.1089/CMB.2004.11.683},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/ZhihuaYBBL04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ZhouWDRS04,
author = {Xiaobo Zhou and
Xiaodong Wang and
Edward R. Dougherty and
Daniel E. Russ and
Edward Suh},
title = {Gene Clustering Based on Clusterwide Mutual Information},
journal = {J. Comput. Biol.},
volume = {11},
number = {1},
pages = {147--161},
year = {2004},
url = {https://doi.org/10.1089/106652704773416939},
doi = {10.1089/106652704773416939},
timestamp = {Mon, 04 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ZhouWDRS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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