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@article{DBLP:journals/jbcb/0001EA19,
author = {Qin Ding and
Oliver Eulenstein and
Hisham Al{-}Mubaid},
title = {Foreword: Special Issue for the 2019 International Conference on Bioinformatics
and Computational Biology {(BICOB-2019)}},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {6},
pages = {1902004:1--1902004:2},
year = {2019},
url = {https://doi.org/10.1142/S0219720019020049},
doi = {10.1142/S0219720019020049},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/0001EA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/AlamKDCW19,
author = {Md. Ashad Alam and
Osamu Komori and
Hong{-}Wen Deng and
Vince D. Calhoun and
Yu{-}Ping Wang},
title = {Robust kernel canonical correlation analysis to detect gene-gene co-associations:
{A} case study in genetics},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {4},
pages = {1950028:1--1950028:23},
year = {2019},
url = {https://doi.org/10.1142/S0219720019500288},
doi = {10.1142/S0219720019500288},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/AlamKDCW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/AndonovDFL19,
author = {Rumen Andonov and
Hristo N. Djidjev and
Sebastien Fran{\c{c}}ois and
Dominique Lavenier},
title = {Complete assembly of circular and chloroplast genomes based on global
optimization},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {3},
pages = {1950014:1--1950014:23},
year = {2019},
url = {https://doi.org/10.1142/S0219720019500148},
doi = {10.1142/S0219720019500148},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/AndonovDFL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/BahramiNHM19,
author = {Abolfazl Bahrami and
Ali Najafi and
Mohammadreza Hashemi and
Seyed Reza Miraie{-}Ashtiani},
title = {{PSSP:} Protein splice site prediction algorithm using Bayesian approach},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {6},
pages = {1950034:1--1950034:18},
year = {2019},
url = {https://doi.org/10.1142/S0219720019500343},
doi = {10.1142/S0219720019500343},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/BahramiNHM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/BatovaBD19,
author = {Anna Sergeevna Batova and
Aleksandr Nikolaevich Bugay and
Ermuhammad Berdimurodovich Dushanov},
title = {Effect of mutant {NMDA} receptors on the oscillations in a model of
hippocampus},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {1},
pages = {1940003:1--1940003:15},
year = {2019},
url = {https://doi.org/10.1142/S0219720019400031},
doi = {10.1142/S0219720019400031},
timestamp = {Wed, 24 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/BatovaBD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/BonginiNB19,
author = {Pietro Bongini and
Neri Niccolai and
Monica Bianchini},
title = {Glycine-induced formation and druggability score prediction of protein
surface pockets},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {5},
pages = {1950026:1--1950026:18},
year = {2019},
url = {https://doi.org/10.1142/S0219720019500264},
doi = {10.1142/S0219720019500264},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/BonginiNB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/ChuL19,
author = {Yen{-}Wei Chu and
Yu{-}Hong Lee},
title = {Selected Papers from the International Workshop on Cancer Bioinformatics
and Intelligent Medicine {(CBIM2018)}},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {3},
pages = {1902002:1--1902002:2},
year = {2019},
url = {https://doi.org/10.1142/S0219720019020025},
doi = {10.1142/S0219720019020025},
timestamp = {Wed, 24 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/ChuL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/CuvitogluZHI19,
author = {Ali Cuvitoglu and
Joseph Xu Zhou and
Sui Huang and
Zerrin Isik},
title = {Predicting drug synergy for precision medicine using network biology
and machine learning},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {2},
pages = {1950012:1--1950012:20},
year = {2019},
url = {https://doi.org/10.1142/S0219720019500124},
doi = {10.1142/S0219720019500124},
timestamp = {Wed, 24 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/CuvitogluZHI19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/FangMLS19,
author = {Chun Fang and
Yoshitaka Moriwaki and
Caihong Li and
Kentaro Shimizu},
title = {MoRFPred{\_}en: Sequence-based prediction of MoRFs using an ensemble
learning strategy},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {6},
pages = {1940015:1--1940015:15},
year = {2019},
url = {https://doi.org/10.1142/S0219720019400158},
doi = {10.1142/S0219720019400158},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/FangMLS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/FangMTLS19,
author = {Chun Fang and
Yoshitaka Moriwaki and
Aikui Tian and
Caihong Li and
Kentaro Shimizu},
title = {Identifying short disorder-to-order binding regions in disordered
proteins with a deep convolutional neural network method},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {1},
pages = {1950004:1--1950004:16},
year = {2019},
url = {https://doi.org/10.1142/S0219720019500045},
doi = {10.1142/S0219720019500045},
timestamp = {Thu, 23 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/FangMTLS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/FatmiBB19,
author = {Abdelhakim El Fatmi and
Ali Bekri and
Said Benhlima},
title = {RNAknot: {A} new algorithm for {RNA} secondary structure prediction
based on genetic algorithm and {GRASP} method},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {5},
pages = {1950031:1--1950031:19},
year = {2019},
url = {https://doi.org/10.1142/S0219720019500318},
doi = {10.1142/S0219720019500318},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/FatmiBB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/GalzitskayaNDL19,
author = {Oxana V. Galzitskaya and
Georgii S. Novikov and
Nikita V. Dovidchenko and
Michail Yu. Lobanov},
title = {Is there codon usage bias for poly-Q stretches in the human proteome?},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {1},
pages = {1950010:1--1950010:10},
year = {2019},
url = {https://doi.org/10.1142/S0219720019500100},
doi = {10.1142/S0219720019500100},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/GalzitskayaNDL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/GaoWL19,
author = {Lei Gao and
Cong Wu and
Lin Liu},
title = {{AUSPP:} {A} universal short-read pre-processing package},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {6},
pages = {1950037:1--1950037:11},
year = {2019},
url = {https://doi.org/10.1142/S0219720019500379},
doi = {10.1142/S0219720019500379},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/GaoWL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/GelhausenWHBR19,
author = {Rick Gelhausen and
Sebastian Will and
Ivo L. Hofacker and
Rolf Backofen and
Martin Raden},
title = {IntaRNAhelix-composing {RNA-RNA} interactions from stable inter-molecular
helices boosts bacterial sRNA target prediction},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {5},
pages = {1940009:1--1940009:16},
year = {2019},
url = {https://doi.org/10.1142/S0219720019400092},
doi = {10.1142/S0219720019400092},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/GelhausenWHBR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/GuptaR19,
author = {Vishan Kumar Gupta and
Prashant Singh Rana},
title = {Toxicity prediction of small drug molecules of androgen receptor using
multilevel ensemble model},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {5},
pages = {1950033:1--1950033:26},
year = {2019},
url = {https://doi.org/10.1142/S0219720019500331},
doi = {10.1142/S0219720019500331},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/GuptaR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/He0C19,
author = {Bifang He and
Jian Huang and
Heng Chen},
title = {PVsiRNAPred: Prediction of plant exclusive virus-derived small interfering
RNAs by deep convolutional neural network},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {6},
pages = {1950039:1--1950039:11},
year = {2019},
url = {https://doi.org/10.1142/S0219720019500392},
doi = {10.1142/S0219720019500392},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/He0C19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/HuangHSY19,
author = {Ting{-}Hua Huang and
Xiali Huang and
Bomei Shi and
Min Yao},
title = {{GEREDB:} Gene expression regulation database curated by mining abstracts
from literature},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {4},
pages = {1950024:1--1950024:12},
year = {2019},
url = {https://doi.org/10.1142/S0219720019500240},
doi = {10.1142/S0219720019500240},
timestamp = {Wed, 24 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/HuangHSY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/HuangHY19,
author = {Ting{-}Hua Huang and
Xiali Huang and
Min Yao},
title = {Min3: Predict microRNA target gene using an improved binding-site
representation method and support vector machine},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {5},
pages = {1950032:1--1950032:19},
year = {2019},
url = {https://doi.org/10.1142/S021972001950032X},
doi = {10.1142/S021972001950032X},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/HuangHY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/InostrozaHSNO19,
author = {Daniel Inostroza and
Cecilia Hern{\'{a}}ndez and
Diego Seco and
Gonzalo Navarro and
Alvaro Olivera{-}Nappa},
title = {Cell cycle and protein complex dynamics in discovering signaling pathways},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {3},
pages = {1950011:1--1950011:21},
year = {2019},
url = {https://doi.org/10.1142/S0219720019500112},
doi = {10.1142/S0219720019500112},
timestamp = {Wed, 28 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/InostrozaHSNO19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/JiangQ19,
author = {Qiangrong Jiang and
Guang Qiu},
title = {Graph kernels combined with the neural network on protein classification},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {5},
pages = {1950030:1--1950030:11},
year = {2019},
url = {https://doi.org/10.1142/S0219720019500306},
doi = {10.1142/S0219720019500306},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/JiangQ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/KabirAS19,
author = {Kazi Lutful Kabir and
Nasrin Akhter and
Amarda Shehu},
title = {From molecular energy landscapes to equilibrium dynamics via landscape
analysis and markov state models},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {6},
pages = {1940014:1--1940014:21},
year = {2019},
url = {https://doi.org/10.1142/S0219720019400146},
doi = {10.1142/S0219720019400146},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/KabirAS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/KimuraTO19,
author = {Shuhei Kimura and
Masato Tokuhisa and
Mariko Okada},
title = {Inference of genetic networks using random forests: Assigning different
weights for gene expression data},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {4},
pages = {1950015:1--1950015:21},
year = {2019},
url = {https://doi.org/10.1142/S021972001950015X},
doi = {10.1142/S021972001950015X},
timestamp = {Wed, 24 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/KimuraTO19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/KudryavtsevaLKN19,
author = {Anna V. Kudryavtseva and
Elena N. Lukyanova and
Sergey L. Kharitonov and
Kirill M. Nyushko and
Alexey A. Krasheninnikov and
Elena A. Pudova and
Zulfiya G. Guvatova and
Boris Y. Alekseev and
Marina V. Kiseleva and
Andrey D. Kaprin and
Alexey A. Dmitriev and
Anastasiya V. Snezhkina and
George S. Krasnov},
title = {Bioinformatic identification of differentially expressed genes associated
with prognosis of locally advanced lymph node-positive prostate cancer},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {1},
pages = {1950003:1--1950003:20},
year = {2019},
url = {https://doi.org/10.1142/S0219720019500033},
doi = {10.1142/S0219720019500033},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/KudryavtsevaLKN19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/KumarAR19,
author = {Sanjeev Kumar and
Suneeta Agarwal and
Ranvijay},
title = {Fast and memory efficient approach for mapping {NGS} reads to a reference
genome},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {2},
pages = {1950008:1--1950008:17},
year = {2019},
url = {https://doi.org/10.1142/S0219720019500082},
doi = {10.1142/S0219720019500082},
timestamp = {Wed, 24 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/KumarAR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/KumarG19,
author = {P. V. Sunil Kumar and
G. Gopakumar},
title = {Inferring disease and pathway associations of long non-coding RNAs
using heterogeneous information network model},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {4},
pages = {1950020:1--1950020:18},
year = {2019},
url = {https://doi.org/10.1142/S0219720019500203},
doi = {10.1142/S0219720019500203},
timestamp = {Wed, 24 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/KumarG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/LeHO19,
author = {Nguyen{-}Quoc{-}Khanh Le and
Quang{-}Thai Ho and
Yu{-}Yen Ou},
title = {Using two-dimensional convolutional neural networks for identifying
{GTP} binding sites in Rab proteins},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {1},
pages = {1950005:1--1950005:19},
year = {2019},
url = {https://doi.org/10.1142/S0219720019500057},
doi = {10.1142/S0219720019500057},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/LeHO19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/LeeLLCHTWY19,
author = {Jung{-}Yu Lee and
Si{-}Yu Lin and
Chun{-}Yu Lin and
Yi{-}Hsuan Chuang and
Sing{-}Han Huang and
Yu{-}Yao Tseng and
Hung{-}Jung Wang and
Jinn{-}Moon Yang},
title = {Identification of the {PCA29} gene signature as a predictor in prostate
cancer},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {3},
pages = {1940006:1--1940006:12},
year = {2019},
url = {https://doi.org/10.1142/S0219720019400067},
doi = {10.1142/S0219720019400067},
timestamp = {Thu, 05 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/LeeLLCHTWY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/Li0019,
author = {Peng Li and
Maozu Guo and
Bo Sun},
title = {Integration of multi-omics data to mine cancer-related gene modules},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {6},
pages = {1950038:1--1950038:24},
year = {2019},
url = {https://doi.org/10.1142/S0219720019500380},
doi = {10.1142/S0219720019500380},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/Li0019.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/LinRLYSSA19,
author = {Chun{-}Yu Lin and
Peiying Ruan and
Ruiming Li and
Jinn{-}Moon Yang and
Simon See and
Jiangning Song and
Tatsuya Akutsu},
title = {Deep learning with evolutionary and genomic profiles for identifying
cancer subtypes},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {3},
pages = {1940005:1--1940005:15},
year = {2019},
url = {https://doi.org/10.1142/S0219720019400055},
doi = {10.1142/S0219720019400055},
timestamp = {Thu, 05 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/LinRLYSSA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/LiuL19,
author = {Luowen Liu and
Jing Liu},
title = {A sparse and decomposed particle swarm optimization for inferring
gene regulatory networks based on fuzzy cognitive maps},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {4},
pages = {1950023:1--1950023:25},
year = {2019},
url = {https://doi.org/10.1142/S0219720019500239},
doi = {10.1142/S0219720019500239},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/LiuL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/LiuMSMELY19,
author = {Yuan Liu and
Yongchao Ma and
Evan Salsman and
Frank A. Manthey and
Elias M. Elias and
Xuehui Li and
Changhui Yan},
title = {An enrichment method for mapping ambiguous reads to the reference
genome for {NGS} analysis},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {6},
pages = {1940012:1--1940012:13},
year = {2019},
url = {https://doi.org/10.1142/S0219720019400122},
doi = {10.1142/S0219720019400122},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/LiuMSMELY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/LuYCZZZ19,
author = {Youming Lu and
Lei Yuan and
Xin Chen and
Aijun Zhang and
Pengqi Zhang and
Dongdong Zou},
title = {Systematic analysis and identification of unexpected interactions
from the neuroprotein drug interactome in hydrocephalus pharmacological
intervention},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {1},
pages = {1950002:1--1950002:16},
year = {2019},
url = {https://doi.org/10.1142/S0219720019500021},
doi = {10.1142/S0219720019500021},
timestamp = {Wed, 24 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/LuYCZZZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/MalekiOHRRK19,
author = {Farhad Maleki and
Katie L. Ovens and
Daniel J. Hogan and
Elham Rezaei and
Alan M. Rosenberg and
Anthony J. Kusalik},
title = {Measuring consistency among gene set analysis methods: {A} systematic
study},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {5},
pages = {1940010:1--1940010:18},
year = {2019},
url = {https://doi.org/10.1142/S0219720019400109},
doi = {10.1142/S0219720019400109},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/MalekiOHRRK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/Maria19,
author = {Elisabetta De Maria},
title = {Introduction to {JBCB} Special Issue on {BIOINFORMATICS} 2019},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {5},
pages = {1902003:1--1902003:2},
year = {2019},
url = {https://doi.org/10.1142/S0219720019020037},
doi = {10.1142/S0219720019020037},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/Maria19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/MatsubaraOHAN19,
author = {Teppei Matsubara and
Tomoshiro Ochiai and
Morihiro Hayashida and
Tatsuya Akutsu and
Jose C. Nacher},
title = {Convolutional neural network approach to lung cancer classification
integrating protein interaction network and gene expression profiles},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {3},
pages = {1940007:1--1940007:11},
year = {2019},
url = {https://doi.org/10.1142/S0219720019400079},
doi = {10.1142/S0219720019400079},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/MatsubaraOHAN19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/Novoselova19,
author = {Natalia G. Novoselova},
title = {Numerical constructions of optimal feedback in models of chemotherapy
of a malignant tumor},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {1},
pages = {1940004:1--1940004:16},
year = {2019},
url = {https://doi.org/10.1142/S0219720019400043},
doi = {10.1142/S0219720019400043},
timestamp = {Wed, 24 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/Novoselova19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/OrlovHT19,
author = {Yuriy L. Orlov and
Ralf Hofest{\"{a}}dt and
Tatiana V. Tatarinova},
title = {Bioinformatics research at {BGRS{\textbackslash}SB-2018}},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {1},
pages = {1902001:1--1902001:4},
year = {2019},
url = {https://doi.org/10.1142/S0219720019020013},
doi = {10.1142/S0219720019020013},
timestamp = {Wed, 24 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/OrlovHT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/PenenkoZMN19,
author = {Alexey Penenko and
Ulyana S. Zubairova and
Zhadyra Mukatova and
Sergey Nikolaev},
title = {Numerical algorithm for morphogen synthesis region identification
with indirect image-type measurement data},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {1},
pages = {1940002:1--1940002:18},
year = {2019},
url = {https://doi.org/10.1142/S021972001940002X},
doi = {10.1142/S021972001940002X},
timestamp = {Wed, 24 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/PenenkoZMN19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/PeyraviLM19,
author = {Farzad Peyravi and
Alimohammad Latif and
Seyed Mohammad Moshtaghioun},
title = {Protein tertiary structure prediction using hidden Markov model based
on lattice},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {2},
pages = {1950007:1--1950007:21},
year = {2019},
url = {https://doi.org/10.1142/S0219720019500070},
doi = {10.1142/S0219720019500070},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/PeyraviLM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/PirgaziKJ19,
author = {Jamshid Pirgazi and
Ali Reza Khanteymoori and
Maryam Jalilkhani},
title = {{TIGRNCRN:} Trustful inference of gene regulatory network using clustering
and refining the network},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {3},
pages = {1950018:1--1950018:26},
year = {2019},
url = {https://doi.org/10.1142/S0219720019500185},
doi = {10.1142/S0219720019500185},
timestamp = {Wed, 24 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/PirgaziKJ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/RubanovaM19,
author = {Natalia Rubanova and
Nadya Morozova},
title = {Centrality and the shortest path approach in the human interactome},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {4},
pages = {1950027:1--1950027:13},
year = {2019},
url = {https://doi.org/10.1142/S0219720019500276},
doi = {10.1142/S0219720019500276},
timestamp = {Wed, 24 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/RubanovaM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/RudikBDLFP19,
author = {Anastasiya V. Rudik and
Vladislav M. Bezhentsev and
Alexander V. Dmitriev and
Alexey Lagunin and
Dmitry Filimonov and
Vladimir Poroikov},
title = {Metatox - Web application for generation of metabolic pathways and
toxicity estimation},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {1},
pages = {1940001:1--1940001:14},
year = {2019},
url = {https://doi.org/10.1142/S0219720019400018},
doi = {10.1142/S0219720019400018},
timestamp = {Wed, 24 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/RudikBDLFP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/RunthalaC19,
author = {Ashish Runthala and
Shibasish Chowdhury},
title = {Refined template selection and combination algorithm significantly
improves template-based modeling accuracy},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {2},
pages = {1950006:1--1950006:21},
year = {2019},
url = {https://doi.org/10.1142/S0219720019500069},
doi = {10.1142/S0219720019500069},
timestamp = {Wed, 24 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/RunthalaC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/SahaPCBN19,
author = {Sovan Saha and
Abhimanyu Prasad and
Piyali Chatterjee and
Subhadip Basu and
Mita Nasipuri},
title = {Protein function prediction from dynamic protein interaction network
using gene expression data},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {4},
pages = {1950025:1--1950025:15},
year = {2019},
url = {https://doi.org/10.1142/S0219720019500252},
doi = {10.1142/S0219720019500252},
timestamp = {Wed, 24 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/SahaPCBN19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/SekiguchiHO19,
author = {Tatsuya Sekiguchi and
Hiroyuki Hamada and
Masahiro Okamoto},
title = {WinBEST-KIT: Biochemical reaction simulator that can define and customize
algebraic equations and events as {GUI} components},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {6},
pages = {1950036:1--1950036:22},
year = {2019},
url = {https://doi.org/10.1142/S0219720019500367},
doi = {10.1142/S0219720019500367},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/SekiguchiHO19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/SenND19,
author = {Rishika Sen and
Losiana Nayak and
Rajat K. De},
title = {PyPredT6: {A} python-based prediction tool for identification of Type
{VI} effector proteins},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {3},
pages = {1950019:1--1950019:18},
year = {2019},
url = {https://doi.org/10.1142/S0219720019500197},
doi = {10.1142/S0219720019500197},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/SenND19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/ShibuyaC19,
author = {Yoshihiro Shibuya and
Matteo Comin},
title = {Indexing k-mers in linear space for quality value compression},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {5},
pages = {1940011:1--1940011:15},
year = {2019},
url = {https://doi.org/10.1142/S0219720019400110},
doi = {10.1142/S0219720019400110},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/ShibuyaC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/SotaSSOSNM19,
author = {Yoshiaki Sota and
Shigeto Seno and
Hironori Shigeta and
Naoki Osato and
Masafumi Shimoda and
Shinzaburo Noguchi and
Hideo Matsuda},
title = {Improvement of detection performance of fusion genes from RNA-seq
data by clustering short reads},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {3},
pages = {1940008:1--1940008:12},
year = {2019},
url = {https://doi.org/10.1142/S0219720019400080},
doi = {10.1142/S0219720019400080},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/SotaSSOSNM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/StephensonDSSA19,
author = {Matthew Stephenson and
Gerarda A. Darlington and
Flavio S. Schenkel and
E. James Squires and
R. Ayesha Ali},
title = {{DSRIG:} Incorporating graphical structure in the regularized modeling
of {SNP} data},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {3},
pages = {1950017:1--1950017:15},
year = {2019},
url = {https://doi.org/10.1142/S0219720019500173},
doi = {10.1142/S0219720019500173},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/StephensonDSSA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/WangLLMYD19,
author = {Huiqing Wang and
Yuanyuan Lian and
Chun Li and
Yue Ma and
Zhiliang Yan and
Chunlin Dong},
title = {{SIN-KNO:} {A} method of gene regulatory network inference using single-cell
transcription and gene knockout data},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {6},
pages = {1950035:1--1950035:28},
year = {2019},
url = {https://doi.org/10.1142/S0219720019500355},
doi = {10.1142/S0219720019500355},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/WangLLMYD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/WangLZWML19,
author = {Huiqing Wang and
Chun Li and
Jianhui Zhang and
Jingjing Wang and
Yue Ma and
Yuanyuan Lian},
title = {A new LSTM-based gene expression prediction model: {L-GEPM}},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {4},
pages = {1950022:1--1950022:19},
year = {2019},
url = {https://doi.org/10.1142/S0219720019500227},
doi = {10.1142/S0219720019500227},
timestamp = {Wed, 24 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/WangLZWML19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/YuZH19,
author = {Qiang Yu and
Xiang Zhao and
Hongwei Huo},
title = {A new algorithm for {DNA} motif discovery using multiple sample sequence
sets},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {4},
pages = {1950021:1--1950021:19},
year = {2019},
url = {https://doi.org/10.1142/S0219720019500215},
doi = {10.1142/S0219720019500215},
timestamp = {Wed, 24 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/YuZH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/YuanLYWW19,
author = {Fang Yuan and
Gan Liu and
Xiwen Yang and
Shunfang Wang and
Xueren Wang},
title = {Prediction of oxidoreductase subfamily classes based on {RFE-SND-CC-PSSM}
and machine learning methods},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {4},
pages = {1950029:1--1950029:25},
year = {2019},
url = {https://doi.org/10.1142/S021972001950029X},
doi = {10.1142/S021972001950029X},
timestamp = {Wed, 24 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/YuanLYWW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/ZamanS19,
author = {Ahmed Bin Zaman and
Amarda Shehu},
title = {Building maps of protein structure spaces in template-free protein
structure prediction},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {6},
pages = {1940013:1--1940013:17},
year = {2019},
url = {https://doi.org/10.1142/S0219720019400134},
doi = {10.1142/S0219720019400134},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/ZamanS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/ZhangXLZ19,
author = {Wei Zhang and
Jia Xu and
Yuanyuan Li and
Xiufen Zou},
title = {Integrating network topology, gene expression data and {GO} annotation
information for protein complex prediction},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {1},
pages = {1950001:1--1950001:20},
year = {2019},
url = {https://doi.org/10.1142/S021972001950001X},
doi = {10.1142/S021972001950001X},
timestamp = {Wed, 24 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/ZhangXLZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/ZhaoSG19,
author = {Yaxing Zhao and
Andrew Chi{-}Hau Sue and
Wilson Wen Bin Goh},
title = {Deeper investigation into the utility of functional class scoring
in missing protein prediction from proteomics data},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {2},
pages = {1950013:1--1950013:17},
year = {2019},
url = {https://doi.org/10.1142/S0219720019500136},
doi = {10.1142/S0219720019500136},
timestamp = {Wed, 24 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/ZhaoSG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/ZhornikovaGS19,
author = {Polina Zhornikova and
Nina Golyandina and
Alexander V. Spirov},
title = {Noise model estimation with application to gene expression},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {2},
pages = {1950009:1--1950009:20},
year = {2019},
url = {https://doi.org/10.1142/S0219720019500094},
doi = {10.1142/S0219720019500094},
timestamp = {Wed, 24 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/ZhornikovaGS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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