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@article{DBLP:journals/almob/AmberkarK15,
  author       = {Sandeep Amberkar and
                  Lars Kaderali},
  title        = {An integrative approach for a network based meta-analysis of viral
                  RNAi screens},
  journal      = {Algorithms Mol. Biol.},
  volume       = {10},
  pages        = {6},
  year         = {2015},
  url          = {https://doi.org/10.1186/s13015-015-0035-7},
  doi          = {10.1186/S13015-015-0035-7},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/AmberkarK15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/Aumentado-Armstrong15,
  author       = {Tristan Aumentado{-}Armstrong and
                  Bogdan Istrate and
                  Robert A. Murgita},
  title        = {Algorithmic approaches to protein-protein interaction site prediction},
  journal      = {Algorithms Mol. Biol.},
  volume       = {10},
  pages        = {7},
  year         = {2015},
  url          = {https://doi.org/10.1186/s13015-015-0033-9},
  doi          = {10.1186/S13015-015-0033-9},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/Aumentado-Armstrong15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/BandyopadhyayR015,
  author       = {Sanghamitra Bandyopadhyay and
                  Sumanta Ray and
                  Anirban Mukhopadhyay and
                  Ujjwal Maulik},
  title        = {A multiobjective approach for identifying protein complexes and studying
                  their association in multiple disorders},
  journal      = {Algorithms Mol. Biol.},
  volume       = {10},
  pages        = {24},
  year         = {2015},
  url          = {https://doi.org/10.1186/s13015-015-0056-2},
  doi          = {10.1186/S13015-015-0056-2},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/almob/BandyopadhyayR015.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/BoyceSH15,
  author       = {Kieran Boyce and
                  Fabian Sievers and
                  Desmond G. Higgins},
  title        = {Instability in progressive multiple sequence alignment algorithms},
  journal      = {Algorithms Mol. Biol.},
  volume       = {10},
  pages        = {26},
  year         = {2015},
  url          = {https://doi.org/10.1186/s13015-015-0057-1},
  doi          = {10.1186/S13015-015-0057-1},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/BoyceSH15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/BozaBV15,
  author       = {Vladim{\'{\i}}r Boza and
                  Brona Brejov{\'{a}} and
                  Tom{\'{a}}s Vinar},
  title        = {{GAML:} genome assembly by maximum likelihood},
  journal      = {Algorithms Mol. Biol.},
  volume       = {10},
  pages        = {18},
  year         = {2015},
  url          = {https://doi.org/10.1186/s13015-015-0052-6},
  doi          = {10.1186/S13015-015-0052-6},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/almob/BozaBV15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/BrucknerHK15,
  author       = {Sharon Bruckner and
                  Falk H{\"{u}}ffner and
                  Christian Komusiewicz},
  title        = {A graph modification approach for finding core-periphery structures
                  in protein interaction networks},
  journal      = {Algorithms Mol. Biol.},
  volume       = {10},
  pages        = {16},
  year         = {2015},
  url          = {https://doi.org/10.1186/s13015-015-0043-7},
  doi          = {10.1186/S13015-015-0043-7},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/BrucknerHK15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/CardonaPR15,
  author       = {Gabriel Cardona and
                  Joan Carles Pons and
                  Francesc Rossell{\'{o}}},
  title        = {A reconstruction problem for a class of phylogenetic networks with
                  lateral gene transfers},
  journal      = {Algorithms Mol. Biol.},
  volume       = {10},
  pages        = {28},
  year         = {2015},
  url          = {https://doi.org/10.1186/s13015-015-0059-z},
  doi          = {10.1186/S13015-015-0059-Z},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/CardonaPR15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/ChoiPCC15,
  author       = {Jongpill Choi and
                  Kiejung Park and
                  Seong Beom Cho and
                  Myungguen Chung},
  title        = {{HIA:} a genome mapper using hybrid index-based sequence alignment},
  journal      = {Algorithms Mol. Biol.},
  volume       = {10},
  pages        = {30},
  year         = {2015},
  url          = {https://doi.org/10.1186/s13015-015-0062-4},
  doi          = {10.1186/S13015-015-0062-4},
  timestamp    = {Wed, 15 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/almob/ChoiPCC15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/CominLS15,
  author       = {Matteo Comin and
                  Andrea Leoni and
                  Michele Schimd},
  title        = {Clustering of reads with alignment-free measures and quality values},
  journal      = {Algorithms Mol. Biol.},
  volume       = {10},
  pages        = {4},
  year         = {2015},
  url          = {https://doi.org/10.1186/s13015-014-0029-x},
  doi          = {10.1186/S13015-014-0029-X},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/almob/CominLS15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/CrawfordSM15,
  author       = {Joseph Crawford and
                  Yihan Sun and
                  Tijana Milenkovic},
  title        = {Fair evaluation of global network aligners},
  journal      = {Algorithms Mol. Biol.},
  volume       = {10},
  pages        = {19},
  year         = {2015},
  url          = {https://doi.org/10.1186/s13015-015-0050-8},
  doi          = {10.1186/S13015-015-0050-8},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/CrawfordSM15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/DonatiBSCS15,
  author       = {Beatrice Donati and
                  Christian Baudet and
                  Blerina Sinaimeri and
                  Pierluigi Crescenzi and
                  Marie{-}France Sagot},
  title        = {{EUCALYPT:} efficient tree reconciliation enumerator},
  journal      = {Algorithms Mol. Biol.},
  volume       = {10},
  pages        = {3},
  year         = {2015},
  url          = {https://doi.org/10.1186/s13015-014-0031-3},
  doi          = {10.1186/S13015-014-0031-3},
  timestamp    = {Sun, 12 Feb 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/DonatiBSCS15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/GalvaoLD15,
  author       = {Gustavo Rodrigues Galv{\~{a}}o and
                  Orlando Lee and
                  Zanoni Dias},
  title        = {Sorting signed permutations by short operations},
  journal      = {Algorithms Mol. Biol.},
  volume       = {10},
  pages        = {12},
  year         = {2015},
  url          = {https://doi.org/10.1186/s13015-015-0040-x},
  doi          = {10.1186/S13015-015-0040-X},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/GalvaoLD15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/GoldsteinB15,
  author       = {Yaron A. B. Goldstein and
                  Alexander Bockmayr},
  title        = {Double and multiple knockout simulations for genome-scale metabolic
                  network reconstructions},
  journal      = {Algorithms Mol. Biol.},
  volume       = {10},
  pages        = {1},
  year         = {2015},
  url          = {https://doi.org/10.1186/s13015-014-0028-y},
  doi          = {10.1186/S13015-014-0028-Y},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/GoldsteinB15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/GonzalezWLJ15,
  author       = {Luis C. Gonz{\'{a}}lez and
                  Hui Wang and
                  Dennis R. Livesay and
                  Donald J. Jacobs},
  title        = {A virtual pebble game to ensemble average graph rigidity},
  journal      = {Algorithms Mol. Biol.},
  volume       = {10},
  pages        = {11},
  year         = {2015},
  url          = {https://doi.org/10.1186/s13015-015-0039-3},
  doi          = {10.1186/S13015-015-0039-3},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/GonzalezWLJ15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/GuYKWW15,
  author       = {Junfeng Gu and
                  Xu Yang and
                  Ling Kang and
                  Jinying Wu and
                  Xicheng Wang},
  title        = {MoDock: {A} multi-objective strategy improves the accuracy for molecular
                  docking},
  journal      = {Algorithms Mol. Biol.},
  volume       = {10},
  pages        = {8},
  year         = {2015},
  url          = {https://doi.org/10.1186/s13015-015-0034-8},
  doi          = {10.1186/S13015-015-0034-8},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/GuYKWW15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/HoffmannSS15,
  author       = {Steve Hoffmann and
                  Peter F. Stadler and
                  Korbinian Strimmer},
  title        = {A simple data-adaptive probabilistic variant calling model},
  journal      = {Algorithms Mol. Biol.},
  volume       = {10},
  pages        = {10},
  year         = {2015},
  url          = {https://doi.org/10.1186/s13015-015-0037-5},
  doi          = {10.1186/S13015-015-0037-5},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/HoffmannSS15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/HordijkSS15,
  author       = {Wim Hordijk and
                  Joshua I. Smith and
                  Mike A. Steel},
  title        = {Algorithms for detecting and analysing autocatalytic sets},
  journal      = {Algorithms Mol. Biol.},
  volume       = {10},
  pages        = {15},
  year         = {2015},
  url          = {https://doi.org/10.1186/s13015-015-0042-8},
  doi          = {10.1186/S13015-015-0042-8},
  timestamp    = {Fri, 29 Jan 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/HordijkSS15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/KhosraviGPLSBG15,
  author       = {Pegah Khosravi and
                  Vahid H. Gazestani and
                  Leila Pirhaji and
                  Brian Law and
                  Mehdi Sadeghi and
                  Gary D. Bader and
                  Bahram Goliaei},
  title        = {Erratum to: Inferring interaction type in gene regulatory networks
                  using co-expression data},
  journal      = {Algorithms Mol. Biol.},
  volume       = {10},
  pages        = {25},
  year         = {2015},
  url          = {https://doi.org/10.1186/s13015-015-0055-3},
  doi          = {10.1186/S13015-015-0055-3},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/KhosraviGPLSBG15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/KhosraviGPLSGB15,
  author       = {Pegah Khosravi and
                  Vahid H. Gazestani and
                  Leila Pirhaji and
                  Brian Law and
                  Mehdi Sadeghi and
                  Bahram Goliaei and
                  Gary D. Bader},
  title        = {Inferring interaction type in gene regulatory networks using co-expression
                  data},
  journal      = {Algorithms Mol. Biol.},
  volume       = {10},
  pages        = {23},
  year         = {2015},
  url          = {https://doi.org/10.1186/s13015-015-0054-4},
  doi          = {10.1186/S13015-015-0054-4},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/KhosraviGPLSGB15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/KopczynskiR15,
  author       = {Dominik Kopczynski and
                  Sven Rahmann},
  title        = {An online peak extraction algorithm for ion mobility spectrometry
                  data},
  journal      = {Algorithms Mol. Biol.},
  volume       = {10},
  pages        = {17},
  year         = {2015},
  url          = {https://doi.org/10.1186/s13015-015-0045-5},
  doi          = {10.1186/S13015-015-0045-5},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/almob/KopczynskiR15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/KrippahlB15,
  author       = {Ludwig Krippahl and
                  Pedro Barahona},
  title        = {Protein docking with predicted constraints},
  journal      = {Algorithms Mol. Biol.},
  volume       = {10},
  pages        = {9},
  year         = {2015},
  url          = {https://doi.org/10.1186/s13015-015-0036-6},
  doi          = {10.1186/S13015-015-0036-6},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/KrippahlB15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/Le15,
  author       = {Duc{-}Hau Le},
  title        = {A novel method for identifying disease associated protein complexes
                  based on functional similarity protein complex networks},
  journal      = {Algorithms Mol. Biol.},
  volume       = {10},
  pages        = {14},
  year         = {2015},
  url          = {https://doi.org/10.1186/s13015-015-0044-6},
  doi          = {10.1186/S13015-015-0044-6},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/Le15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/MartinezFBS15,
  author       = {F{\'{a}}bio Viduani Martinez and
                  Pedro Feij{\~{a}}o and
                  Mar{\'{\i}}lia D. V. Braga and
                  Jens Stoye},
  title        = {On the family-free {DCJ} distance and similarity},
  journal      = {Algorithms Mol. Biol.},
  volume       = {10},
  pages        = {13},
  year         = {2015},
  url          = {https://doi.org/10.1186/s13015-015-0041-9},
  doi          = {10.1186/S13015-015-0041-9},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/MartinezFBS15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/MorgensternZHL15,
  author       = {Burkhard Morgenstern and
                  Binyao Zhu and
                  Sebastian Horwege and
                  Chris Leimeister},
  title        = {Estimating evolutionary distances between genomic sequences from spaced-word
                  matches},
  journal      = {Algorithms Mol. Biol.},
  volume       = {10},
  pages        = {5},
  year         = {2015},
  url          = {https://doi.org/10.1186/s13015-015-0032-x},
  doi          = {10.1186/S13015-015-0032-X},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/MorgensternZHL15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/NairJHZ15,
  author       = {Govind Nair and
                  Christian Jungreuthmayer and
                  Michael Hanscho and
                  J{\"{u}}rgen Zanghellini},
  title        = {Designing minimal microbial strains of desired functionality using
                  a genetic algorithm},
  journal      = {Algorithms Mol. Biol.},
  volume       = {10},
  pages        = {29},
  year         = {2015},
  url          = {https://doi.org/10.1186/s13015-015-0060-6},
  doi          = {10.1186/S13015-015-0060-6},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/almob/NairJHZ15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/PengWWP15,
  author       = {Wei Peng and
                  Jianxin Wang and
                  Fang{-}Xiang Wu and
                  Yi Pan},
  title        = {Detecting conserved protein complexes using a dividing-and-matching
                  algorithm and unequally lenient criteria for network comparison},
  journal      = {Algorithms Mol. Biol.},
  volume       = {10},
  pages        = {21},
  year         = {2015},
  url          = {https://doi.org/10.1186/s13015-015-0053-5},
  doi          = {10.1186/S13015-015-0053-5},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/almob/PengWWP15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/Poleksic15,
  author       = {Aleksandar Poleksic},
  title        = {A polynomial time algorithm for computing the area under a {GDT} curve},
  journal      = {Algorithms Mol. Biol.},
  volume       = {10},
  pages        = {27},
  year         = {2015},
  url          = {https://doi.org/10.1186/s13015-015-0058-0},
  doi          = {10.1186/S13015-015-0058-0},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/Poleksic15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/ReichelBMPMS15,
  author       = {Katja Reichel and
                  Valentin Bahier and
                  C{\'{e}}dric Midoux and
                  Nicolas Parisey and
                  Jean{-}Pierre Masson and
                  Solenn Stoeckel},
  title        = {Interpretation and approximation tools for big, dense Markov chain
                  transition matrices in population genetics},
  journal      = {Algorithms Mol. Biol.},
  volume       = {10},
  pages        = {31},
  year         = {2015},
  url          = {https://doi.org/10.1186/s13015-015-0061-5},
  doi          = {10.1186/S13015-015-0061-5},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/ReichelBMPMS15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/SacomotoLS15,
  author       = {Gustavo Sacomoto and
                  Vincent Lacroix and
                  Marie{-}France Sagot},
  title        = {A polynomial delay algorithm for the enumeration of bubbles with length
                  constraints in directed graphs},
  journal      = {Algorithms Mol. Biol.},
  volume       = {10},
  pages        = {20},
  year         = {2015},
  url          = {https://doi.org/10.1186/s13015-015-0046-4},
  doi          = {10.1186/S13015-015-0046-4},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/SacomotoLS15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/SauleG15,
  author       = {C{\'{e}}dric Saule and
                  Robert Giegerich},
  title        = {Pareto optimization in algebraic dynamic programming},
  journal      = {Algorithms Mol. Biol.},
  volume       = {10},
  pages        = {22},
  year         = {2015},
  url          = {https://doi.org/10.1186/s13015-015-0051-7},
  doi          = {10.1186/S13015-015-0051-7},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/SauleG15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/VinhLBH15,
  author       = {Le Vinh and
                  Tran Lang and
                  Le Binh and
                  Tran Hoai},
  title        = {A two-phase binning algorithm using l-mer frequency on groups of non-overlapping
                  reads},
  journal      = {Algorithms Mol. Biol.},
  volume       = {10},
  pages        = {2},
  year         = {2015},
  url          = {https://doi.org/10.1186/s13015-014-0030-4},
  doi          = {10.1186/S13015-014-0030-4},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/VinhLBH15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

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