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@inproceedings{DBLP:conf/bcb/AgarwalZSC10,
author = {Alpna Agarwal and
Susan Zolla{-}Pazner and
James Swetnam and
Timothy Cardozo},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Effective neutralization and neutralization epitope masking signatures
for four anti-V3 mAbs},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {656},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854903},
doi = {10.1145/1854776.1854903},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/AgarwalZSC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/AgrawalCH10,
author = {Ankit Agrawal and
Alok N. Choudhary and
Xiaoqiu Huang},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Derived distribution points heuristic for fast pairwise statistical
significance estimation},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {312--321},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854819},
doi = {10.1145/1854776.1854819},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/AgrawalCH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/AhmedNPKHD10,
author = {Syed Toufeeq Ahmed and
Radhika Nair and
Chintan Patel and
Sheela P. Kanwar and
J{\"{o}}rg Hakenberg and
Hasan Davulcu},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Semantic classification and dependency parsing enabled automated bio-molecular
event extraction from text},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {370--373},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854832},
doi = {10.1145/1854776.1854832},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/AhmedNPKHD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/AhnS10,
author = {Tae{-}Hyuk Ahn and
Adrian Sandu},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Parallel stochastic simulations of budding yeast cell cycle: load
balancing strategies and theoretical analysis},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {237--246},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854811},
doi = {10.1145/1854776.1854811},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/AhnS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/AhnYP10,
author = {Jaegyoon Ahn and
Youngmi Yoon and
Sanghyun Park},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {A novel cancer classifier based on differentially expressed gene network},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {493--495},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854868},
doi = {10.1145/1854776.1854868},
timestamp = {Wed, 15 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/AhnYP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/AltiparmakGF10,
author = {Fatih Altiparmak and
Michael Gibas and
Hakan Ferhatosmanoglu},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Relationship preserving feature selection for unlabelled clinical
trials time-series},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {7--16},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854784},
doi = {10.1145/1854776.1854784},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/AltiparmakGF10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/AnSXMO10,
author = {Li An and
Desmond J. Smith and
Hongbo M. Xie and
Vasileios Megalooikonomou and
Zoran Obradovic},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Identifying gene functions using functional expression profiles obtained
by voxelation},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {188--197},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854805},
doi = {10.1145/1854776.1854805},
timestamp = {Tue, 03 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/AnSXMO10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ArditoMMG10,
author = {Matthew Ardito and
Leonard Moise and
William D. Martin and
Anne S. De Groot},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Immunoinformatic approach to a multi-pathogen genome-derived epitope-driven
vaccine},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {616--620},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854891},
doi = {10.1145/1854776.1854891},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/ArditoMMG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ArditoZMMGM10,
author = {Matthew Ardito and
Songhua Zhang and
William D. Martin and
Steven F. Moss and
Anne S. De Groot and
Leonard Moise},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Immunoinformatic-driven \emph{H. pylori} vaccine design},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {611--615},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854890},
doi = {10.1145/1854776.1854890},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/ArditoZMMGM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/AshlockD10,
author = {Wendy Ashlock and
Suprakash Datta},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Using Fourier phase analysis on genomic sequences to identify retroviruses},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {406--409},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854841},
doi = {10.1145/1854776.1854841},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/AshlockD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/AshlockH10,
author = {Daniel A. Ashlock and
Sheridan K. Houghten},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Ring optimization of edit metric codes in {DNA}},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {222--229},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854809},
doi = {10.1145/1854776.1854809},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/AshlockH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/AyK10,
author = {Ferhat Ay and
Tamer Kahveci},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Functional similarities of reaction sets in metabolic pathways},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {102--111},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854795},
doi = {10.1145/1854776.1854795},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/AyK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/BandyopadhyaySK10,
author = {Nirmalya Bandyopadhyay and
A. Mark Settles and
Tamer Kahveci},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {RepFrag: a graph based method for finding repeats and transposons
from fragmented genomes},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {92--101},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854794},
doi = {10.1145/1854776.1854794},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/BandyopadhyaySK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/BaroukhRG10,
author = {Caroline Baroukh and
Anthony Rowe and
Yike Guo},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Process calculi for systems biology},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {496--497},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854869},
doi = {10.1145/1854776.1854869},
timestamp = {Mon, 22 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/BaroukhRG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/BhattacharyaSMLSCABD10,
author = {Sanchita Bhattacharya and
Shai Shen{-}Orr and
Holden T. Maecker and
Laura Lazzeroni and
Gary E. Swan and
J. David Clark and
Martin S. Angst and
Atul J. Butte and
Mark M. Davis},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Immunological response in normal healthy twins across age},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {657},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854904},
doi = {10.1145/1854776.1854904},
timestamp = {Wed, 08 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/BhattacharyaSMLSCABD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/BlackJFN10,
author = {Rachel A. Black and
David J. John and
Jacquelyn S. Fetrow and
James L. Norris},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Examining effects of variability on systems biology modeling algorithms},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {374--377},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854833},
doi = {10.1145/1854776.1854833},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/BlackJFN10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/BozdagKC10,
author = {Doruk Bozdag and
Ashwin S. Kumar and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Comparative analysis of biclustering algorithms},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {265--274},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854814},
doi = {10.1145/1854776.1854814},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/BozdagKC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/BrelandSGH10,
author = {Adrienne Breland and
Karen Schlauch and
Mehmet Hadi Gunes and
Frederick C. Harris Jr.},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Fast graph approaches to measure influenza transmission across geographically
distributed host types},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {594--601},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854887},
doi = {10.1145/1854776.1854887},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/BrelandSGH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/BrelandSNH10,
author = {Adrienne Breland and
Karen Schlauch and
Monica N. Nicolescu and
Frederick C. Harris Jr.},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {An annotated \emph{k}-deep prefix tree for (1-\emph{k})-mer based
sequence comparisons},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {79--85},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854792},
doi = {10.1145/1854776.1854792},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/BrelandSNH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/BurleighBEV10,
author = {J. Gordon Burleigh and
Mukul S. Bansal and
Oliver Eulenstein and
Todd J. Vision},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Inferring species trees from gene duplication episodes},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {198--203},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854806},
doi = {10.1145/1854776.1854806},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/BurleighBEV10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/CakmakDHO10,
author = {Ali Cakmak and
Arun Dsouza and
Richard W. Hanson and
Z. Meral {\"{O}}zsoyoglu},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Analyzing metabolite measurements for automated prediction of underlying
biological mechanisms},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {137--146},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854799},
doi = {10.1145/1854776.1854799},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/CakmakDHO10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/CannataroGV10,
author = {Mario Cannataro and
Pietro Hiram Guzzi and
Pierangelo Veltri},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Using {RDF} for managing protein-protein interaction data},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {664--670},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854909},
doi = {10.1145/1854776.1854909},
timestamp = {Wed, 19 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/CannataroGV10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/Caoili10,
author = {Salvador Eugenio C. Caoili},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {B-cell epitope prediction for peptide-based vaccine design: towards
a paradigm of biological outcomes},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {602--610},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854889},
doi = {10.1145/1854776.1854889},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/Caoili10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/CarageaSCH10,
author = {Cornelia Caragea and
Adrian Silvescu and
Doina Caragea and
Vasant G. Honavar},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Semi-supervised sequence classification using abstraction augmented
Markov models},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {257--264},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854813},
doi = {10.1145/1854776.1854813},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/CarageaSCH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ChaeCKA10,
author = {Heejoon Chae and
Kwangmin Choi and
Sun Kim and
Haleh Ashki},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {EGGSlicer: predicting biologically meaningful gene sets from gene
clusters using gene ontology information},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {448--450},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854853},
doi = {10.1145/1854776.1854853},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/ChaeCKA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ChailyanCMT10,
author = {Anna Chailyan and
Davide Cirillo and
Paolo Marcatili and
Anna Tramontano},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Structural landscape of immunoglobulin lambda light chains},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {651--652},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854901},
doi = {10.1145/1854776.1854901},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/ChailyanCMT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ChaitankarGZGP10,
author = {Vijender Chaitankar and
Preetam Ghosh and
Chaoyang Zhang and
Ping Gong and
Edward J. Perkins},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Effects of cDNA microarray time-series data size on gene regulatory
network inference accuracy},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {410--413},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854842},
doi = {10.1145/1854776.1854842},
timestamp = {Tue, 24 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/ChaitankarGZGP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ChengCO10,
author = {En Cheng and
Ali Cakmak and
Z. Meral {\"{O}}zsoyoglu},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Efficient query evaluation for DAG-shaped hierarchies},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {454--456},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854855},
doi = {10.1145/1854776.1854855},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/ChengCO10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ChiarugiFOP10,
author = {Davide Chiarugi and
Moreno Falaschi and
Carlos Olarte and
Catuscia Palamidessi},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Compositional modelling of signalling pathways in timed concurrent
constraint programming},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {414--417},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854843},
doi = {10.1145/1854776.1854843},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/ChiarugiFOP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ChimaniRB10,
author = {Markus Chimani and
Sven Rahmann and
Sebastian B{\"{o}}cker},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Exact {ILP} solutions for phylogenetic minimum flip problems},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {147--153},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854800},
doi = {10.1145/1854776.1854800},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/ChimaniRB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/Cho10,
author = {Young{-}Rae Cho},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Topological analysis of structural roles of proteins in interactome
networks},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {587--593},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854886},
doi = {10.1145/1854776.1854886},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/Cho10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ClimerTZ10,
author = {Sharlee Climer and
Alan R. Templeton and
Weixiong Zhang},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {SplittingHeirs: inferring haplotypes by optimizing resultant dense
graphs},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {127--136},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854798},
doi = {10.1145/1854776.1854798},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/ClimerTZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/Cottingham10,
author = {Bob Cottingham},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Bioinformatics - transition from algorithmic to data intensive science},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {2},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854779},
doi = {10.1145/1854776.1854779},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/Cottingham10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/CrockettR10,
author = {David K. Crockett and
Perry G. Ridge},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {A novel representation of {HLA} allele specificity and prediction
algorithm for {HLA} class {I} binding},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {642--643},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854895},
doi = {10.1145/1854776.1854895},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/CrockettR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/DempseyCHA10,
author = {Kathryn Dempsey and
Benjamin Currall and
Richard Hallworth and
Hesham H. Ali},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {An intelligent data-centric approach toward identification of conserved
motifs in protein sequences},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {398--401},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854839},
doi = {10.1145/1854776.1854839},
timestamp = {Fri, 11 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/DempseyCHA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/DiasD10,
author = {Ulisses Dias and
Zanoni Dias},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {An improved 1.375-approximation algorithm for the transposition distance
problem},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {334--337},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854823},
doi = {10.1145/1854776.1854823},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/DiasD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/DingZ10,
author = {Zejin Jason Ding and
Yan{-}Qing Zhang},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {An effective filtering gene selection method for microarray data via
shuffling and statistical analysis},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {382--385},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854835},
doi = {10.1145/1854776.1854835},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/DingZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/DuBK10,
author = {Tianchuan Du and
Shuju Bai and
Ebrahim Khosravi},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Docking arachidonic acid to 8R-lipoxygenase using internal coordinate
mechanics},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {445--447},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854852},
doi = {10.1145/1854776.1854852},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/DuBK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/DuitamaHMSH10,
author = {Jorge Duitama and
Thomas Huebsch and
Gayle McEwen and
Eun{-}Kyung Suk and
Margret R. Hoehe},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {ReFHap: a reliable and fast algorithm for single individual haplotyping},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {160--169},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854802},
doi = {10.1145/1854776.1854802},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/DuitamaHMSH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/El-ManzalawyH10,
author = {Yasser El{-}Manzalawy and
Vasant G. Honavar},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {A framework for developing epitope prediction tools},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {660--662},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854906},
doi = {10.1145/1854776.1854906},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/El-ManzalawyH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ElnitskiLW10,
author = {Laura Elnitski and
Jens Lichtenberg and
Lonnie R. Welch},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Regulatory network nodes of \emph{check point factors} in {DNA} repair
pathways},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {529--536},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854877},
doi = {10.1145/1854776.1854877},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/ElnitskiLW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/EstradaAT10,
author = {Trilce Estrada and
Roger S. Armen and
Michela Taufer},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Automatic selection of near-native protein-ligand conformations using
a hierarchical clustering and volunteer computing},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {204--213},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854807},
doi = {10.1145/1854776.1854807},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/EstradaAT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/FengJ10,
author = {Jinchao Feng and
Kebin Jia},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Spectrally resolved bioluminescence tomography with Huber-Markov random-field
regularization},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {338--341},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854824},
doi = {10.1145/1854776.1854824},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/FengJ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/FincherTD10,
author = {Justin A. Fincher and
Gary Tyson and
Jonathan H. Dennis},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {A computational exploration of gene regulation by nucleosome position},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {469--471},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854860},
doi = {10.1145/1854776.1854860},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/FincherTD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/FrousiosIMPT10,
author = {Kimon Frousios and
Costas S. Iliopoulos and
Laurent Mouchard and
Solon P. Pissis and
German Tischler},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {{REAL:} an efficient REad ALigner for next generation sequencing reads},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {154--159},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854801},
doi = {10.1145/1854776.1854801},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/FrousiosIMPT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/GanesanCBT10,
author = {Narayan Ganesan and
Roger D. Chamberlain and
Jeremy Buhler and
Michela Taufer},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Accelerating {HMMER} on GPUs by implementing hybrid data and task
parallelism},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {418--421},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854844},
doi = {10.1145/1854776.1854844},
timestamp = {Mon, 16 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/GanesanCBT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/Gerstein10,
author = {Mark Gerstein},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Analysis of molecular networks},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {1},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854778},
doi = {10.1145/1854776.1854778},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/Gerstein10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/GhoshKDR10,
author = {Preetam Ghosh and
Amit Kumar and
Bhaswati Datta and
Vijayaraghavan Rangachari},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Estimating the dynamics of protofibril elongation involved in A{\(\beta\)}42
peptide aggregation in Alzheimer's disease},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {451--453},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854854},
doi = {10.1145/1854776.1854854},
timestamp = {Wed, 25 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/GhoshKDR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/GongXZP10,
author = {Ping Gong and
Fuliang Xie and
Baohong Zhang and
Edward J. Perkins},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {In silico identification of microRNAs from expressed sequence tags
of three earthworm species},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {430--434},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854847},
doi = {10.1145/1854776.1854847},
timestamp = {Tue, 24 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/GongXZP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/GosakMGBR10,
author = {Marko Gosak and
Marko Marhl and
Christelle Guibert and
Marie Billaud and
Etienne Roux},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Pulmonary artery smooth muscle responses to KCl under normoxic and
hypoxic conditions studied by means of a spatial network model},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {475--477},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854862},
doi = {10.1145/1854776.1854862},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/GosakMGBR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/HalaHM10,
author = {David Hala and
Duane B. Huggett and
Dalma Martinovic},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {\emph{In silico} predicted essential genes required for zebrafish
(\emph{Danio rerio}) steroid hormone production},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {487--489},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854866},
doi = {10.1145/1854776.1854866},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/HalaHM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/HankelnBKKYDG10,
author = {Wolfgang Hankeln and
Pier Luigi Buttigieg and
Ivaylo Kostadinov and
Renzo Kottmann and
Pelin Yilmaz and
Melissa Beth Duhaime and
Frank Oliver Gl{\"{o}}ckner},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Applying graph theoretic approaches to microbial metagenomes: ecological
perspectives on function},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {478--480},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854863},
doi = {10.1145/1854776.1854863},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/HankelnBKKYDG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/HeinzelSS10,
author = {Andreas Heinzel and
Johannes S{\"{o}}llner and
Suszan Szathmary},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Application of systems biology for understanding of disease and selection
of molecular targets for therapy},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {647},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854898},
doi = {10.1145/1854776.1854898},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/HeinzelSS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/HuH10,
author = {Qinmin Vivian Hu and
Jimmy Xiangji Huang},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Genomics information retrieval using a Bayesian model for learning
and re-ranking},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {426--429},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854846},
doi = {10.1145/1854776.1854846},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/HuH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/HuangDLLTDLTX10,
author = {Tao Huang and
Guohui Ding and
Yixue Li and
Lei Liu and
Eugene Tan and
Hongyue Dai and
Qi Liu and
Zhidong Tu and
Lu Xie},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Dysfunctional gene/protein networks in hepatitis {C} virus-induced
hepatocellular cirrhosis and carcinoma},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {502--507},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854873},
doi = {10.1145/1854776.1854873},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/HuangDLLTDLTX10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/HuangTDHTH10,
author = {Jingshan Huang and
Ming Tan and
Dejing Dou and
Lei He and
Christopher Townsend and
Patrick J. Hayes},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Ontology for MicroRNA Target prediction in human cancer},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {472--474},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854861},
doi = {10.1145/1854776.1854861},
timestamp = {Wed, 24 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/HuangTDHTH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/KargarA10,
author = {Mehdi Kargar and
Aijun An},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Evaluation of different complexity measures for signal detection in
genome sequences},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {422--425},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854845},
doi = {10.1145/1854776.1854845},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/KargarA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/KatebiGZSGTKJ10,
author = {Ataur R. Katebi and
Pawel Gniewek and
Michael T. Zimmermann and
Saras Saraswathi and
Zhenming Gong and
Christopher K. Tuggle and
Andrzej Kloczkowski and
Robert L. Jernigan},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Immunological implications of a structural analysis of two different
porcine IL1{\(\beta\)} proteins expressed in macrophages and embryos},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {653--655},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854902},
doi = {10.1145/1854776.1854902},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/KatebiGZSGTKJ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/KimD10,
author = {Hyunsoo Kim and
Ramana V. Davuluri},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Data mining of mRNA-Seq and small RNA-Seq data to find microRNA targets},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {499--501},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854871},
doi = {10.1145/1854776.1854871},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/KimD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/KimDZG10,
author = {Mi{-}Young Kim and
Qing Dou and
Osmar R. Za{\"{\i}}ane and
Randy Goebel},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Unsupervised mapping of sentences to biomedical concepts based on
integrated information retrieval model and clustering},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {322--329},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854820},
doi = {10.1145/1854776.1854820},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/KimDZG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/KimRZ10,
author = {Taehyong Kim and
Murali Ramanathan and
Aidong Zhang},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {A graph-based approach for computational model of bone microstructure},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {563--568},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854883},
doi = {10.1145/1854776.1854883},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/KimRZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/KroneDE10,
author = {Michael Krone and
Carsten Dachsbacher and
Thomas Ertl},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Parallel computation and interactive visualization of time-varying
solvent excluded surfaces},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {402--405},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854840},
doi = {10.1145/1854776.1854840},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/KroneDE10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/Kumar10,
author = {Vipin Kumar},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Personalized medicine - challenges and opportunities for informatics
research},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {3--4},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854780},
doi = {10.1145/1854776.1854780},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/Kumar10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/KummerfeldHTC10,
author = {Sarah K. Kummerfeld and
Jason A. Hackney and
Michael J. Townsend and
Hilary F. Clark},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Rheumatoid Arthritis molecular heterogeneity},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {663},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854907},
doi = {10.1145/1854776.1854907},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/KummerfeldHTC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/KundetiRD10,
author = {Vamsi Kundeti and
Sanguthevar Rajasekaran and
Hieu Dinh},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {On the border length minimization problem {(BLMP)} on a square array},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {112--119},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854796},
doi = {10.1145/1854776.1854796},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/KundetiRD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/LiH10,
author = {Jing Li and
Kun Huang},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Next generation sequencing data analysis},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {5},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854781},
doi = {10.1145/1854776.1854781},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/LiH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/LiLZWGP10,
author = {Haoni Li and
Peng Li and
Chaoyang Zhang and
Nan Wang and
Ping Gong and
Edward J. Perkins},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Performance evaluation of the time-delayed dynamic Bayesian network
approach to inferring gene regulatory networks from time series microarray
data},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {466--468},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854859},
doi = {10.1145/1854776.1854859},
timestamp = {Tue, 24 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/LiLZWGP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/LiSB10,
author = {Cen Li and
Suk Jai Seo and
Ralph Butler},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Hunting for truly relevant articles in bioinformatics literature:
a preliminary study},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {481--483},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854864},
doi = {10.1145/1854776.1854864},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/LiSB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/LiSNR10,
author = {Yifeng Li and
Numanul Subhani and
Alioune Ngom and
Luis Rueda},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Alignment-based versus variation-based transformation methods for
clustering microarray time-series data},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {53--61},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854789},
doi = {10.1145/1854776.1854789},
timestamp = {Wed, 08 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/LiSNR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/LiTZ10,
author = {Yue Li and
Gary S. Tyson and
Jinfeng Zhang},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Effect of sequences on the shape of protein energy landscapes},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {35--42},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854787},
doi = {10.1145/1854776.1854787},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/LiTZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/LiYGYY10,
author = {Guo{-}Zheng Li and
Mingyu You and
Lei Ge and
Jack Y. Yang and
Mary Qu Yang},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Feature selection for semi-supervised multi-label learning with application
to gene function analysis},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {354--357},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854828},
doi = {10.1145/1854776.1854828},
timestamp = {Fri, 13 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/LiYGYY10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/LiuNZ10,
author = {Yang Liu and
Michael K. Ng and
Jin Zhou},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {{SNP} specific extraction and analysis using shrunken dissimilarity
measure},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {378--381},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854834},
doi = {10.1145/1854776.1854834},
timestamp = {Wed, 03 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/LiuNZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/LiuSZ10,
author = {Wei Liu and
Anuj Srivastava and
Jinfeng Zhang},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Protein structure alignment using elastic shape analysis},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {62--70},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854790},
doi = {10.1145/1854776.1854790},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/LiuSZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/LundegaardBKLPN10,
author = {Claus Lundegaard and
M. Buggert and
A. C. Karlsson and
Ole Lund and
Carina Perez and
Morten Nielsen},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {PopCover: a method for selecting of peptides with optimal population
and pathogen coverage},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {658--659},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854905},
doi = {10.1145/1854776.1854905},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/LundegaardBKLPN10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/MaCHC10,
author = {Chifeng Ma and
Hung{-}I Harry Chen and
Yufei Huang and
Yidong Chen},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Constructing a compound mode-of-action network for personalized drug
effectiveness prediction},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {520--528},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854876},
doi = {10.1145/1854776.1854876},
timestamp = {Mon, 27 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/MaCHC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/MaD10,
author = {Fangrui Ma and
Jitender S. Deogun},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {The solution space of genome sequence alignment and {LIS} graph decomposition},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {302--311},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854818},
doi = {10.1145/1854776.1854818},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/MaD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ManninenK10,
author = {Tiina Manninen and
Daniel X. Keller},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Comparison of discrete- and continuous-state stochastic methods to
model neuronal signal transduction},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {394--397},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854838},
doi = {10.1145/1854776.1854838},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/ManninenK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/MarcottFLA10,
author = {Pamela F. Marcott and
Jacquelyn S. Fetrow and
Richard F. Loeser and
Edward E. Allen},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Computational modeling of the effects of oxidative stress on the {IGF-1}
signaling pathway in human articular chondrocytes},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {71--78},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854791},
doi = {10.1145/1854776.1854791},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/MarcottFLA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/McDermottBSSRSTJ10,
author = {Jason E. McDermott and
Bob Baddeley and
Susan L. Stevens and
Antonio Sanfilippo and
Rick Riensche and
Mary P. Stenzel{-}Poore and
Ronald C. Taylor and
Russ Jensen},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {An integrated approach to predictive genomic analytics},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {390--393},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854837},
doi = {10.1145/1854776.1854837},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/McDermottBSSRSTJ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/MounsefKEZ10,
author = {Jinane Mounsef and
Lina J. Karam and
Patricia Estes and
Daniela Zamescu},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Shape analysis and classification of \emph{lgl}-type and wild-type
neurons},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {362--365},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854830},
doi = {10.1145/1854776.1854830},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/MounsefKEZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/NairGC10,
author = {Nishanth Ulhas Nair and
Navin Goyal and
Nagasuma R. Chandra},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Enhanced flux balance analysis to model metabolic networks},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {358--361},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854829},
doi = {10.1145/1854776.1854829},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/NairGC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/OdibatRG10,
author = {Omar Odibat and
Chandan K. Reddy and
Craig N. Giroux},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Differential biclustering for gene expression analysis},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {275--284},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854815},
doi = {10.1145/1854776.1854815},
timestamp = {Sat, 24 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/OdibatRG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/OnsongoXGC10,
author = {Getiria Onsongo and
Hongwei Xie and
Timothy J. Griffin and
John V. Carlis},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Relational operators for prioritizing candidate biomarkers in high-throughput
differential expression data},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {25--34},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854786},
doi = {10.1145/1854776.1854786},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/OnsongoXGC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/PakatciWM10,
author = {Isa Kemal Pakatci and
Wei Wang and
Leonard McMillan},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Gene set analysis using principal components},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {330--333},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854822},
doi = {10.1145/1854776.1854822},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/PakatciWM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/PappalardoPM10,
author = {Francesco Pappalardo and
Marzio Pennisi and
Santo Motta},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Universal immune system simulator framework {(UISS)}},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {649--650},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854900},
doi = {10.1145/1854776.1854900},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/PappalardoPM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/PaulP10,
author = {Sinu Paul and
Helen Piontkivska},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Highly conserved and associated {HIV-1} {CTL} and T-Helper epitopes
in global {HIV-1} population: potential candidates for multi-epitope
{HIV-1} vaccine},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {648},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854899},
doi = {10.1145/1854776.1854899},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/PaulP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/Persico10,
author = {Maria Persico},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {A combinatorics based solution for input generation in the context
of classification frameworks aimed to learning interacting protein
class},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {684--689},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854911},
doi = {10.1145/1854776.1854911},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/Persico10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/PintoRR10,
author = {Jos{\'{e}} P. Pinto and
Isabel Rocha and
Miguel Rocha},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {A software tool for network topology analysis under a metabolic engineering
perspective},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {569--578},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854884},
doi = {10.1145/1854776.1854884},
timestamp = {Wed, 12 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/PintoRR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/PolandZNFRP10,
author = {Bradley W. Poland and
Panayiotis Zagouras and
Snehal Naik and
Eric Fauman and
Karl Richter and
Robert M. Peitzsch},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Alzheimer's disease target selection: a data integration approach},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {498},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854870},
doi = {10.1145/1854776.1854870},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/PolandZNFRP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/QayoomZT10,
author = {Mohamad Qayoom and
Qi Zhang and
Christopher Taylor},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {F-statistics algorithm for gene clustering evaluation},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {490--492},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854867},
doi = {10.1145/1854776.1854867},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/QayoomZT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/RamadanOP10,
author = {Emad Y. Ramadan and
Christopher Osgood and
Alex Pothen},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Discovering overlapping modules and bridge proteins in proteomic networks},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {366--369},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854831},
doi = {10.1145/1854776.1854831},
timestamp = {Wed, 02 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/RamadanOP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/RamadanPT10,
author = {Emad Y. Ramadan and
Sudhir Perincheri and
David Tuck},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {A hyper-graph approach for analyzing transcriptional networks in breast
cancer},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {556--562},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854882},
doi = {10.1145/1854776.1854882},
timestamp = {Wed, 02 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/RamadanPT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/RamadanPT10a,
author = {Emad Y. Ramadan and
Sudhir Perincheri and
David Tuck},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Crosstalk measures for analyzing biological networks in breast cancer},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {579--586},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854885},
doi = {10.1145/1854776.1854885},
timestamp = {Wed, 02 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/RamadanPT10a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/RidgeC10,
author = {Perry G. Ridge and
David K. Crockett},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Feature selection for characterizing {HLA} class {I} peptide motif
anchors},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {644--645},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854896},
doi = {10.1145/1854776.1854896},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/RidgeC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/RodionovBRT10,
author = {Alex Rodionov and
Alexandr Bezginov and
Jonathan Rose and
Elisabeth R. M. Tillier},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Faster coevolution detection of proteins using maximum similar cliques},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {484--486},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854865},
doi = {10.1145/1854776.1854865},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/RodionovBRT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/RudniySG10,
author = {Alex Rudniy and
Min Song and
James Geller},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Shortest path edit distance for detecting duplicate biological entities},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {442--444},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854851},
doi = {10.1145/1854776.1854851},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/RudniySG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/SantiniSP10,
author = {Guillaume Santini and
Henry Soldano and
Jo{\"{e}}l Pothier},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Use of ternary similarities in graph based clustering for protein
structural family classification},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {457--459},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854856},
doi = {10.1145/1854776.1854856},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/SantiniSP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/SatuluriPU10,
author = {Venu Satuluri and
Srinivasan Parthasarathy and
Duygu Ucar},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Markov clustering of protein interaction networks with improved balance
and scalability},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {247--256},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854812},
doi = {10.1145/1854776.1854812},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/SatuluriPU10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/SinghTK10,
author = {Irtisha Singh and
{\"{O}}znur Tastan and
Judith Klein{-}Seetharaman},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Comparison of virus interactions with human signal transduction pathways},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {17--24},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854785},
doi = {10.1145/1854776.1854785},
timestamp = {Sat, 20 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/SinghTK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/SinghalSAB10,
author = {Mudita Singhal and
Anuj R. Shah and
Joshua N. Adkins and
Roslyn Brown},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Using support vector machine for improving protein-protein interaction
prediction utilizing domain interactions},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {537--545},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854878},
doi = {10.1145/1854776.1854878},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/SinghalSAB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/SongRK10,
author = {Bin Song and
Sanjay Ranka and
Tamer Kahveci},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Enzymatic target identification with dynamic states},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {180--187},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854804},
doi = {10.1145/1854776.1854804},
timestamp = {Tue, 25 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/SongRK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/SoniBS10,
author = {Ameet Soni and
Craig A. Bingman and
Jude W. Shavlik},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Guiding belief propagation using domain knowledge for protein-structure
determination},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {285--294},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854816},
doi = {10.1145/1854776.1854816},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/SoniBS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/TaylorBSRVMJ10,
author = {Ronald C. Taylor and
Bob Baddeley and
Antonio Sanfilippo and
Rick Riensche and
Marc Verhagen and
Jason E. McDermott and
Russ Jensen},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Learning biological networks via bootstrapping with optimized go-based
gene similarity},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {515--519},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854875},
doi = {10.1145/1854776.1854875},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/TaylorBSRVMJ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/TengLW10,
author = {Shaolei Teng and
Hong Luo and
Liangjiang Wang},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Random forest-based prediction of protein sumoylation sites from sequence
features},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {120--126},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854797},
doi = {10.1145/1854776.1854797},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/TengLW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/TomainoGCV10,
author = {Vera Tomaino and
Pietro Hiram Guzzi and
Mario Cannataro and
Pierangelo Veltri},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Experimental comparison of biclustering algorithms for {PPI} networks},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {671--676},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854910},
doi = {10.1145/1854776.1854910},
timestamp = {Wed, 19 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/TomainoGCV10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/UppalapatiXH10,
author = {Praneeth Uppalapati and
Yang Xiang and
Kun Huang},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Predicting prognostic markers for glioma using gene co-expression
network analysis},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {546--551},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854879},
doi = {10.1145/1854776.1854879},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/UppalapatiXH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/VisvanathanRALNBB10,
author = {Mahesh Visvanathan and
Shanker Rao and
Vijay Anand and
Gerald H. Lushington and
Michael Netzer and
Christian Baumgartner and
George R. Bousfield},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {A multi-tier data mining workflow to analyze the age related shift
from diglycosylated- to tetra-glycosylated-FSH secretion by the anterior
pituitary},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {508--514},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854874},
doi = {10.1145/1854776.1854874},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/VisvanathanRALNBB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/VisvanathanSLLB10,
author = {Mahesh Visvanathan and
Sasidhar R. Siddam and
In{-}Hee Lee and
Gerald H. Lushington and
George R. Bousfield},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Systematic data integration platform for functional glycomics},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {435--438},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854848},
doi = {10.1145/1854776.1854848},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/VisvanathanSLLB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/WanBDG10,
author = {Ying{-}Wooi Wan and
Swetha Bose and
James Denvir and
Nancy Lan Guo},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {A novel network model for molecular prognosis},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {342--345},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854825},
doi = {10.1145/1854776.1854825},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/WanBDG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/Wang10,
author = {Patrick Wang},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Intelligent pattern recognition and applications},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {6},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854782},
doi = {10.1145/1854776.1854782},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/Wang10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/WangG10,
author = {Jun Wang and
Maozu Guo},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {A graph and hierarchical clustering based approach for population
structure inference},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {346--349},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854826},
doi = {10.1145/1854776.1854826},
timestamp = {Wed, 11 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/WangG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/WangMZVWM10,
author = {Jeremy W. Wang and
Kyle J. Moore and
Qi Zhang and
Fernando Pardo{-}Manuel de Villena and
Wei Wang and
Leonard McMillan},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Genome-wide compatible {SNP} intervals and their properties},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {43--52},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854788},
doi = {10.1145/1854776.1854788},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/WangMZVWM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/WangPSS10,
author = {Peng Wang and
Bj{\"{o}}rn Peters and
John Sidney and
Alessandro Sette},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {An automatic computational pipeline to display {MHC} binding motifs},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {634--641},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854894},
doi = {10.1145/1854776.1854894},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/WangPSS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/XiangD10,
author = {Qian Xiang and
Xianhua Dai},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Modeling the competitive effects of nucleosomes on transcription factors
binding},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {350--353},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854827},
doi = {10.1145/1854776.1854827},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/XiangD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/XiaoSTTPHS10,
author = {Mei Xiao and
Jung Soh and
Morgan L. Taschuk and
Andrei L. Turinsky and
Trish E. Parsons and
Benedikt Hallgr{\'{\i}}msson and
Christoph W. Sensen},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Visualization of biological shape transformation by 3D model morphing},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {460--462},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854857},
doi = {10.1145/1854776.1854857},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/XiaoSTTPHS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/YangPLYQLC10,
author = {Bin Yang and
Yu Peng and
Henry C. M. Leung and
Siu{-}Ming Yiu and
Junjie Qin and
Ruiqiang Li and
Francis Y. L. Chin},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {MetaCluster: unsupervised binning of environmental genomic fragments
and taxonomic annotation},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {170--179},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854803},
doi = {10.1145/1854776.1854803},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/YangPLYQLC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/YangS10,
author = {Kuan Yang and
Jo{\~{a}}o C. Setubal},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Homology prediction refinement and reconstruction of gene content
and order of ancestral bacterial genomes},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {230--236},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854810},
doi = {10.1145/1854776.1854810},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/YangS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/YanoverMGPB10,
author = {Chen Yanover and
Mari Malkki and
Ted Gooley and
Effie W. Petersdorf and
Philip Bradley},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {How do amino acid mismatches affect the outcome of hematopoietic cell
transplants?: a structural perspective},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {627--633},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854893},
doi = {10.1145/1854776.1854893},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/YanoverMGPB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/YueLLCCH10,
author = {Dong Yue and
Hui Liu and
Mingzhu Lu and
Philip Chen and
Yidong Chen and
Yufei Huang},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {A Bayesian decision fusion approach for microRNA target prediction},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {214--221},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854808},
doi = {10.1145/1854776.1854808},
timestamp = {Mon, 27 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/YueLLCCH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ZhanY10,
author = {Choujun Zhan and
Lam Fat Yeung},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {A parameter estimation approach for non-linear systems biology models
using spline approximation},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {86--91},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854793},
doi = {10.1145/1854776.1854793},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/ZhanY10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ZhangFZFZ10,
author = {Changjiang Zhang and
Kimberly Forsten{-}Williams and
Bing Zhao and
Michael Fannon and
Jun Zhang},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Coupling between heparan sulfate proteoglycans and {FGF-2} receptors
is key to {FGF-2} capture under flow: a computational study},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {439--441},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854850},
doi = {10.1145/1854776.1854850},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/ZhangFZFZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ZhangLFD10,
author = {Yu Zhang and
Xiuwen Liu and
Justin A. Fincher and
Jonathan H. Dennis},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {{DNA} sequence feature selection for intrinsic nucleosome positioning
signals using AdaBoost},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {386--389},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854836},
doi = {10.1145/1854776.1854836},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/ZhangLFD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ZhangWC10,
author = {Fan Zhang and
Mu Wang and
Jake Y. Chen},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Breast cancer plasma protein biomarker discovery by coupling {LC-MS/MS}
proteomics and systems biology},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {463--465},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854858},
doi = {10.1145/1854776.1854858},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/ZhangWC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ZhouDS10,
author = {An Zhou and
Larry David and
Roger Simon},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {De novo proteomics of neuronal ischemic tolerance},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {552--555},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854880},
doi = {10.1145/1854776.1854880},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/ZhouDS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ZhouRZ10,
author = {Xuefeng Zhou and
Jianhua Ruan and
Weixiong Zhang},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Promoter prediction based on a multiple instance learning scheme},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {295--301},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854817},
doi = {10.1145/1854776.1854817},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/ZhouRZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ZimmermannSSKJ10,
author = {Michael T. Zimmermann and
Aris Skliros and
Saras Saraswathi and
Andrzej Kloczkowski and
Robert L. Jernigan},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Immunoglobulin functional motions and their effects on the complementarity
determining regions},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {621--626},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854892},
doi = {10.1145/1854776.1854892},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/ZimmermannSSKJ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ZviLLS10,
author = {Anat Zvi and
David Lewinsohn and
Deborah Lewinsohn and
Avigdor Shafferman},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Whole-genome immunoinformatic analysis of \emph{Mycobacterium tuberculosis}
towards large scale identification of immunodominant {CD8} epitopes},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {646},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854897},
doi = {10.1145/1854776.1854897},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/ZviLLS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/bcb/2010,
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
publisher = {{ACM}},
year = {2010},
isbn = {978-1-4503-0438-2},
timestamp = {Wed, 16 Mar 2011 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/2010.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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