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@incollection{DBLP:books/sp/16/BaekS16,
  author       = {Songjoon Baek and
                  Myong{-}Hee Sung},
  editor       = {Ewy A Math{\'{e}} and
                  Sean R. Davis},
  title        = {Genome-Scale Analysis of Cell-Specific Regulatory Codes Using Nuclear
                  Enzymes},
  booktitle    = {Statistical Genomics - Methods and Protocols},
  series       = {Methods in Molecular Biology},
  volume       = {1418},
  pages        = {225--240},
  publisher    = {Springer},
  year         = {2016},
  url          = {https://doi.org/10.1007/978-1-4939-3578-9\_12},
  doi          = {10.1007/978-1-4939-3578-9\_12},
  timestamp    = {Fri, 15 Mar 2024 13:51:10 +0100},
  biburl       = {https://dblp.org/rec/books/sp/16/BaekS16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@incollection{DBLP:books/sp/16/CarlsonPAOM16,
  author       = {Marc Carlson and
                  Herv{\'{e}} Pag{\`{e}}s and
                  Sonali Arora and
                  Valerie Obenchain and
                  Martin Morgan},
  editor       = {Ewy A Math{\'{e}} and
                  Sean R. Davis},
  title        = {Genomic Annotation Resources in R/Bioconductor},
  booktitle    = {Statistical Genomics - Methods and Protocols},
  series       = {Methods in Molecular Biology},
  volume       = {1418},
  pages        = {67--90},
  publisher    = {Springer},
  year         = {2016},
  url          = {https://doi.org/10.1007/978-1-4939-3578-9\_4},
  doi          = {10.1007/978-1-4939-3578-9\_4},
  timestamp    = {Mon, 15 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/books/sp/16/CarlsonPAOM16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@incollection{DBLP:books/sp/16/CartyE16,
  author       = {Mark A. Carty and
                  Olivier Elemento},
  editor       = {Ewy A Math{\'{e}} and
                  Sean R. Davis},
  title        = {Practical Analysis of Genome Contact Interaction Experiments},
  booktitle    = {Statistical Genomics - Methods and Protocols},
  series       = {Methods in Molecular Biology},
  volume       = {1418},
  pages        = {177--189},
  publisher    = {Springer},
  year         = {2016},
  url          = {https://doi.org/10.1007/978-1-4939-3578-9\_9},
  doi          = {10.1007/978-1-4939-3578-9\_9},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/books/sp/16/CartyE16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@incollection{DBLP:books/sp/16/Carvalho16,
  author       = {Benilton S. Carvalho},
  editor       = {Ewy A Math{\'{e}} and
                  Sean R. Davis},
  title        = {Working with Oligonucleotide Arrays},
  booktitle    = {Statistical Genomics - Methods and Protocols},
  series       = {Methods in Molecular Biology},
  volume       = {1418},
  pages        = {145--159},
  publisher    = {Springer},
  year         = {2016},
  url          = {https://doi.org/10.1007/978-1-4939-3578-9\_7},
  doi          = {10.1007/978-1-4939-3578-9\_7},
  timestamp    = {Mon, 15 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/books/sp/16/Carvalho16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@incollection{DBLP:books/sp/16/CloughB16,
  author       = {Emily Clough and
                  Tanya Barrett},
  editor       = {Ewy A Math{\'{e}} and
                  Sean R. Davis},
  title        = {The Gene Expression Omnibus Database},
  booktitle    = {Statistical Genomics - Methods and Protocols},
  series       = {Methods in Molecular Biology},
  volume       = {1418},
  pages        = {93--110},
  publisher    = {Springer},
  year         = {2016},
  url          = {https://doi.org/10.1007/978-1-4939-3578-9\_5},
  doi          = {10.1007/978-1-4939-3578-9\_5},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/books/sp/16/CloughB16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@incollection{DBLP:books/sp/16/HahneI16,
  author       = {Florian Hahne and
                  Robert Ivanek},
  editor       = {Ewy A Math{\'{e}} and
                  Sean R. Davis},
  title        = {Visualizing Genomic Data Using Gviz and Bioconductor},
  booktitle    = {Statistical Genomics - Methods and Protocols},
  series       = {Methods in Molecular Biology},
  volume       = {1418},
  pages        = {335--351},
  publisher    = {Springer},
  year         = {2016},
  url          = {https://doi.org/10.1007/978-1-4939-3578-9\_16},
  doi          = {10.1007/978-1-4939-3578-9\_16},
  timestamp    = {Mon, 15 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/books/sp/16/HahneI16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@incollection{DBLP:books/sp/16/Hansen16,
  author       = {Nancy F. Hansen},
  editor       = {Ewy A Math{\'{e}} and
                  Sean R. Davis},
  title        = {Variant Calling From Next Generation Sequence Data},
  booktitle    = {Statistical Genomics - Methods and Protocols},
  series       = {Methods in Molecular Biology},
  volume       = {1418},
  pages        = {209--224},
  publisher    = {Springer},
  year         = {2016},
  url          = {https://doi.org/10.1007/978-1-4939-3578-9\_11},
  doi          = {10.1007/978-1-4939-3578-9\_11},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/books/sp/16/Hansen16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@incollection{DBLP:books/sp/16/HonaasAK16,
  author       = {Loren A. Honaas and
                  Naomi S. Altman and
                  Martin Krzywinski},
  editor       = {Ewy A Math{\'{e}} and
                  Sean R. Davis},
  title        = {Study Design for Sequencing Studies},
  booktitle    = {Statistical Genomics - Methods and Protocols},
  series       = {Methods in Molecular Biology},
  volume       = {1418},
  pages        = {39--66},
  publisher    = {Springer},
  year         = {2016},
  url          = {https://doi.org/10.1007/978-1-4939-3578-9\_3},
  doi          = {10.1007/978-1-4939-3578-9\_3},
  timestamp    = {Sun, 25 Oct 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/books/sp/16/HonaasAK16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@incollection{DBLP:books/sp/16/LienhardC16,
  author       = {Matthias Lienhard and
                  Lukas Chavez},
  editor       = {Ewy A Math{\'{e}} and
                  Sean R. Davis},
  title        = {Quantitative Comparison of Large-Scale {DNA} Enrichment Sequencing
                  Data},
  booktitle    = {Statistical Genomics - Methods and Protocols},
  series       = {Methods in Molecular Biology},
  volume       = {1418},
  pages        = {191--208},
  publisher    = {Springer},
  year         = {2016},
  url          = {https://doi.org/10.1007/978-1-4939-3578-9\_10},
  doi          = {10.1007/978-1-4939-3578-9\_10},
  timestamp    = {Mon, 15 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/books/sp/16/LienhardC16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@incollection{DBLP:books/sp/16/LunCS16,
  author       = {Aaron T. L. Lun and
                  Yunshun Chen and
                  Gordon K. Smyth},
  editor       = {Ewy A Math{\'{e}} and
                  Sean R. Davis},
  title        = {It's DE-licious: {A} Recipe for Differential Expression Analyses of
                  RNA-seq Experiments Using Quasi-Likelihood Methods in edgeR},
  booktitle    = {Statistical Genomics - Methods and Protocols},
  series       = {Methods in Molecular Biology},
  volume       = {1418},
  pages        = {391--416},
  publisher    = {Springer},
  year         = {2016},
  url          = {https://doi.org/10.1007/978-1-4939-3578-9\_19},
  doi          = {10.1007/978-1-4939-3578-9\_19},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/books/sp/16/LunCS16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@incollection{DBLP:books/sp/16/Mendoza-ParraSBCG16,
  author       = {Marco{-}Antonio Mendoza{-}Parra and
                  Mohamed{-}Ashick M. Saleem and
                  Matthias Blum and
                  Pierre{-}Etienne Cholley and
                  Hinrich Gronemeyer},
  editor       = {Ewy A Math{\'{e}} and
                  Sean R. Davis},
  title        = {{NGS-QC} Generator: {A} Quality Control System for ChIP-Seq and Related
                  Deep Sequencing-Generated Datasets},
  booktitle    = {Statistical Genomics - Methods and Protocols},
  series       = {Methods in Molecular Biology},
  volume       = {1418},
  pages        = {243--265},
  publisher    = {Springer},
  year         = {2016},
  url          = {https://doi.org/10.1007/978-1-4939-3578-9\_13},
  doi          = {10.1007/978-1-4939-3578-9\_13},
  timestamp    = {Mon, 15 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/books/sp/16/Mendoza-ParraSBCG16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@incollection{DBLP:books/sp/16/MengC16,
  author       = {Chen Meng and
                  Aed{\'{\i}}n C. Culhane},
  editor       = {Ewy A Math{\'{e}} and
                  Sean R. Davis},
  title        = {Integrative Exploratory Analysis of Two or More Genomic Datasets},
  booktitle    = {Statistical Genomics - Methods and Protocols},
  series       = {Methods in Molecular Biology},
  volume       = {1418},
  pages        = {19--38},
  publisher    = {Springer},
  year         = {2016},
  url          = {https://doi.org/10.1007/978-1-4939-3578-9\_2},
  doi          = {10.1007/978-1-4939-3578-9\_2},
  timestamp    = {Sun, 25 Oct 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/books/sp/16/MengC16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@incollection{DBLP:books/sp/16/NephRKS16,
  author       = {Shane J. Neph and
                  Alex P. Reynolds and
                  Scott Kuehn and
                  John A. Stamatoyannopoulos},
  editor       = {Ewy A Math{\'{e}} and
                  Sean R. Davis},
  title        = {Operating on Genomic Ranges Using {BEDOPS}},
  booktitle    = {Statistical Genomics - Methods and Protocols},
  series       = {Methods in Molecular Biology},
  volume       = {1418},
  pages        = {267--281},
  publisher    = {Springer},
  year         = {2016},
  url          = {https://doi.org/10.1007/978-1-4939-3578-9\_14},
  doi          = {10.1007/978-1-4939-3578-9\_14},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/books/sp/16/NephRKS16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@incollection{DBLP:books/sp/16/SmithF16,
  author       = {Tony C. Smith and
                  Eibe Frank},
  editor       = {Ewy A Math{\'{e}} and
                  Sean R. Davis},
  title        = {Introducing Machine Learning Concepts with {WEKA}},
  booktitle    = {Statistical Genomics - Methods and Protocols},
  series       = {Methods in Molecular Biology},
  volume       = {1418},
  pages        = {353--378},
  publisher    = {Springer},
  year         = {2016},
  url          = {https://doi.org/10.1007/978-1-4939-3578-9\_17},
  doi          = {10.1007/978-1-4939-3578-9\_17},
  timestamp    = {Mon, 15 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/books/sp/16/SmithF16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@incollection{DBLP:books/sp/16/WaldronR16,
  author       = {Levi Waldron and
                  Markus Riester},
  editor       = {Ewy A Math{\'{e}} and
                  Sean R. Davis},
  title        = {Meta-Analysis in Gene Expression Studies},
  booktitle    = {Statistical Genomics - Methods and Protocols},
  series       = {Methods in Molecular Biology},
  volume       = {1418},
  pages        = {161--176},
  publisher    = {Springer},
  year         = {2016},
  url          = {https://doi.org/10.1007/978-1-4939-3578-9\_8},
  doi          = {10.1007/978-1-4939-3578-9\_8},
  timestamp    = {Mon, 15 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/books/sp/16/WaldronR16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@incollection{DBLP:books/sp/16/WangJZ16,
  author       = {Zhining Wang and
                  Mark A. Jensen and
                  Jean{-}Claude Zenklusen},
  editor       = {Ewy A Math{\'{e}} and
                  Sean R. Davis},
  title        = {A Practical Guide to The Cancer Genome Atlas {(TCGA)}},
  booktitle    = {Statistical Genomics - Methods and Protocols},
  series       = {Methods in Molecular Biology},
  volume       = {1418},
  pages        = {111--141},
  publisher    = {Springer},
  year         = {2016},
  url          = {https://doi.org/10.1007/978-1-4939-3578-9\_6},
  doi          = {10.1007/978-1-4939-3578-9\_6},
  timestamp    = {Sun, 25 Oct 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/books/sp/16/WangJZ16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@incollection{DBLP:books/sp/16/Wu016,
  author       = {Zhijin Wu and
                  Hao Wu},
  editor       = {Ewy A Math{\'{e}} and
                  Sean R. Davis},
  title        = {Experimental Design and Power Calculation for RNA-seq Experiments},
  booktitle    = {Statistical Genomics - Methods and Protocols},
  series       = {Methods in Molecular Biology},
  volume       = {1418},
  pages        = {379--390},
  publisher    = {Springer},
  year         = {2016},
  url          = {https://doi.org/10.1007/978-1-4939-3578-9\_18},
  doi          = {10.1007/978-1-4939-3578-9\_18},
  timestamp    = {Mon, 15 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/books/sp/16/Wu016.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@incollection{DBLP:books/sp/16/WuRLBB16,
  author       = {Thomas D. Wu and
                  Jens Reeder and
                  Michael Lawrence and
                  Gabe Becker and
                  Matthew J. Brauer},
  editor       = {Ewy A Math{\'{e}} and
                  Sean R. Davis},
  title        = {{GMAP} and {GSNAP} for Genomic Sequence Alignment: Enhancements to
                  Speed, Accuracy, and Functionality},
  booktitle    = {Statistical Genomics - Methods and Protocols},
  series       = {Methods in Molecular Biology},
  volume       = {1418},
  pages        = {283--334},
  publisher    = {Springer},
  year         = {2016},
  url          = {https://doi.org/10.1007/978-1-4939-3578-9\_15},
  doi          = {10.1007/978-1-4939-3578-9\_15},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/books/sp/16/WuRLBB16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@incollection{DBLP:books/sp/16/Zhang16,
  author       = {Hongen Zhang},
  editor       = {Ewy A Math{\'{e}} and
                  Sean R. Davis},
  title        = {Overview of Sequence Data Formats},
  booktitle    = {Statistical Genomics - Methods and Protocols},
  series       = {Methods in Molecular Biology},
  volume       = {1418},
  pages        = {3--17},
  publisher    = {Springer},
  year         = {2016},
  url          = {https://doi.org/10.1007/978-1-4939-3578-9\_1},
  doi          = {10.1007/978-1-4939-3578-9\_1},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/books/sp/16/Zhang16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@book{DBLP:books/sp/16/MD2016,
  editor       = {Ewy A Math{\'{e}} and
                  Sean R. Davis},
  title        = {Statistical Genomics - Methods and Protocols},
  series       = {Methods in Molecular Biology},
  volume       = {1418},
  publisher    = {Springer},
  year         = {2016},
  url          = {https://doi.org/10.1007/978-1-4939-3578-9},
  doi          = {10.1007/978-1-4939-3578-9},
  isbn         = {978-1-4939-3576-5},
  timestamp    = {Fri, 15 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/books/sp/16/MD2016.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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