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@incollection{DBLP:books/sp/17/BarturenOH17,
  author       = {Guillermo Barturen and
                  Jos{\'{e}} L. Oliver and
                  Michael Hackenberg},
  editor       = {Mourad Elloumi},
  title        = {Error Correction in Methylation Profiling From {NGS} Bisulfite Protocols},
  booktitle    = {Algorithms for Next-Generation Sequencing Data, Techniques, Approaches,
                  and Applications},
  pages        = {167--183},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-59826-0\_8},
  doi          = {10.1007/978-3-319-59826-0\_8},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/books/sp/17/BarturenOH17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@incollection{DBLP:books/sp/17/BenoitLRDL17,
  author       = {Ga{\"{e}}tan Benoit and
                  Claire Lemaitre and
                  Guillaume Rizk and
                  Erwan Drezen and
                  Dominique Lavenier},
  editor       = {Mourad Elloumi},
  title        = {De Novo {NGS} Data Compression},
  booktitle    = {Algorithms for Next-Generation Sequencing Data, Techniques, Approaches,
                  and Applications},
  pages        = {91--115},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-59826-0\_4},
  doi          = {10.1007/978-3-319-59826-0\_4},
  timestamp    = {Mon, 07 May 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/books/sp/17/BenoitLRDL17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@incollection{DBLP:books/sp/17/CominS17,
  author       = {Matteo Comin and
                  Michele Schimd},
  editor       = {Mourad Elloumi},
  title        = {Assembly-Free Techniques for {NGS} Data},
  booktitle    = {Algorithms for Next-Generation Sequencing Data, Techniques, Approaches,
                  and Applications},
  pages        = {327--355},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-59826-0\_14},
  doi          = {10.1007/978-3-319-59826-0\_14},
  timestamp    = {Sun, 25 Oct 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/books/sp/17/CominS17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@incollection{DBLP:books/sp/17/FisconW17,
  author       = {Giulia Fiscon and
                  Emanuel Weitschek},
  editor       = {Mourad Elloumi},
  title        = {String-Matching and Alignment Algorithms for Finding Motifs in {NGS}
                  Data},
  booktitle    = {Algorithms for Next-Generation Sequencing Data, Techniques, Approaches,
                  and Applications},
  pages        = {235--264},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-59826-0\_11},
  doi          = {10.1007/978-3-319-59826-0\_11},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/books/sp/17/FisconW17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@incollection{DBLP:books/sp/17/FlouriZCKS17,
  author       = {Tom{\'{a}}s Flouri and
                  Jiajie Zhang and
                  Lucas Czech and
                  Kassian Kobert and
                  Alexandros Stamatakis},
  editor       = {Mourad Elloumi},
  title        = {An Efficient Approach to Merging Paired-End Reads and Incorporation
                  of Uncertainties},
  booktitle    = {Algorithms for Next-Generation Sequencing Data, Techniques, Approaches,
                  and Applications},
  pages        = {299--325},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-59826-0\_13},
  doi          = {10.1007/978-3-319-59826-0\_13},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/books/sp/17/FlouriZCKS17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@incollection{DBLP:books/sp/17/IliopoulosPR17,
  author       = {Costas S. Iliopoulos and
                  Solon P. Pissis and
                  M. Sohel Rahman},
  editor       = {Mourad Elloumi},
  title        = {Searching and Indexing Circular Patterns},
  booktitle    = {Algorithms for Next-Generation Sequencing Data, Techniques, Approaches,
                  and Applications},
  pages        = {77--90},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-59826-0\_3},
  doi          = {10.1007/978-3-319-59826-0\_3},
  timestamp    = {Mon, 15 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/books/sp/17/IliopoulosPR17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@incollection{DBLP:books/sp/17/JeanRR17,
  author       = {G{\'{e}}raldine Jean and
                  Andreea Radulescu and
                  Irena Rusu},
  editor       = {Mourad Elloumi},
  title        = {The Contig Assembly Problem and Its Algorithmic Solutions},
  booktitle    = {Algorithms for Next-Generation Sequencing Data, Techniques, Approaches,
                  and Applications},
  pages        = {267--298},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-59826-0\_12},
  doi          = {10.1007/978-3-319-59826-0\_12},
  timestamp    = {Mon, 07 May 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/books/sp/17/JeanRR17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@incollection{DBLP:books/sp/17/LiuS17,
  author       = {Yongchao Liu and
                  Bertil Schmidt},
  editor       = {Mourad Elloumi},
  title        = {{CUSHAW} Suite: Parallel and Efficient Algorithms for {NGS} Read Alignment},
  booktitle    = {Algorithms for Next-Generation Sequencing Data, Techniques, Approaches,
                  and Applications},
  pages        = {203--233},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-59826-0\_10},
  doi          = {10.1007/978-3-319-59826-0\_10},
  timestamp    = {Wed, 07 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/books/sp/17/LiuS17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@incollection{DBLP:books/sp/17/NsiraLE17,
  author       = {Nadia Ben Nsira and
                  Thierry Lecroq and
                  Mourad Elloumi},
  editor       = {Mourad Elloumi},
  title        = {Algorithms for Indexing Highly Similar {DNA} Sequences},
  booktitle    = {Algorithms for Next-Generation Sequencing Data, Techniques, Approaches,
                  and Applications},
  pages        = {3--39},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-59826-0\_1},
  doi          = {10.1007/978-3-319-59826-0\_1},
  timestamp    = {Fri, 02 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/books/sp/17/NsiraLE17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@incollection{DBLP:books/sp/17/SchulzB17,
  author       = {Marcel H. Schulz and
                  Ziv Bar{-}Joseph},
  editor       = {Mourad Elloumi},
  title        = {Probabilistic Models for Error Correction of Nonuniform Sequencing
                  Data},
  booktitle    = {Algorithms for Next-Generation Sequencing Data, Techniques, Approaches,
                  and Applications},
  pages        = {131--145},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-59826-0\_6},
  doi          = {10.1007/978-3-319-59826-0\_6},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/books/sp/17/SchulzB17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@incollection{DBLP:books/sp/17/ShenSL17,
  author       = {Carol Shen and
                  Tony Shen and
                  Jimmy Lin},
  editor       = {Mourad Elloumi},
  title        = {Comparative Assessment of Alignment Algorithms for {NGS} Data: Features,
                  Considerations, Implementations, and Future},
  booktitle    = {Algorithms for Next-Generation Sequencing Data, Techniques, Approaches,
                  and Applications},
  pages        = {187--202},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-59826-0\_9},
  doi          = {10.1007/978-3-319-59826-0\_9},
  timestamp    = {Sun, 25 Oct 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/books/sp/17/ShenSL17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@incollection{DBLP:books/sp/17/Theodoridis17,
  author       = {Evangelos Theodoridis},
  editor       = {Mourad Elloumi},
  title        = {Cloud Storage-Management Techniques for {NGS} Data},
  booktitle    = {Algorithms for Next-Generation Sequencing Data, Techniques, Approaches,
                  and Applications},
  pages        = {117--128},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-59826-0\_5},
  doi          = {10.1007/978-3-319-59826-0\_5},
  timestamp    = {Mon, 07 May 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/books/sp/17/Theodoridis17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@incollection{DBLP:books/sp/17/WeeseS17,
  author       = {David Weese and
                  Enrico Siragusa},
  editor       = {Mourad Elloumi},
  title        = {Full-Text Indexes for High-Throughput Sequencing},
  booktitle    = {Algorithms for Next-Generation Sequencing Data, Techniques, Approaches,
                  and Applications},
  pages        = {41--75},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-59826-0\_2},
  doi          = {10.1007/978-3-319-59826-0\_2},
  timestamp    = {Mon, 07 May 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/books/sp/17/WeeseS17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@incollection{DBLP:books/sp/17/WeeseSR17,
  author       = {David Weese and
                  Marcel H. Schulz and
                  Hugues Richard},
  editor       = {Mourad Elloumi},
  title        = {DNA-Seq Error Correction Based on Substring Indices},
  booktitle    = {Algorithms for Next-Generation Sequencing Data, Techniques, Approaches,
                  and Applications},
  pages        = {147--166},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-59826-0\_7},
  doi          = {10.1007/978-3-319-59826-0\_7},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/books/sp/17/WeeseSR17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@book{DBLP:books/sp/E2017,
  editor       = {Mourad Elloumi},
  title        = {Algorithms for Next-Generation Sequencing Data, Techniques, Approaches,
                  and Applications},
  publisher    = {Springer},
  year         = {2017},
  isbn         = {978-3-319-59824-6},
  timestamp    = {Mon, 07 May 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/books/sp/E2017.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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