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@inproceedings{DBLP:conf/wabi/0001CM23,
author = {Nicola Rizzo and
Manuel C{\'{a}}ceres and
Veli M{\"{a}}kinen},
editor = {Djamal Belazzougui and
A{\"{\i}}da Ouangraoua},
title = {Finding Maximal Exact Matches in Graphs},
booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI}
2023, September 4-6, 2023, Houston, TX, {USA}},
series = {LIPIcs},
volume = {273},
pages = {10:1--10:17},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2023},
url = {https://doi.org/10.4230/LIPIcs.WABI.2023.10},
doi = {10.4230/LIPICS.WABI.2023.10},
timestamp = {Wed, 21 Aug 2024 22:46:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/0001CM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/0001R0P23,
author = {Pawel G{\'{o}}recki and
Natalia Rutecka and
Agnieszka Mykowiecka and
Jaroslaw Paszek},
editor = {Djamal Belazzougui and
A{\"{\i}}da Ouangraoua},
title = {Simultaneous Reconstruction of Duplication Episodes and Gene-Species
Mappings},
booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI}
2023, September 4-6, 2023, Houston, TX, {USA}},
series = {LIPIcs},
volume = {273},
pages = {6:1--6:18},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2023},
url = {https://doi.org/10.4230/LIPIcs.WABI.2023.6},
doi = {10.4230/LIPICS.WABI.2023.6},
timestamp = {Tue, 29 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/0001R0P23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ArastiM23,
author = {Shayesteh Arasti and
Siavash Mirarab},
editor = {Djamal Belazzougui and
A{\"{\i}}da Ouangraoua},
title = {Optimal Subtree Prune and Regraft for Quartet Score in Sub-Quadratic
Time},
booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI}
2023, September 4-6, 2023, Houston, TX, {USA}},
series = {LIPIcs},
volume = {273},
pages = {4:1--4:20},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2023},
url = {https://doi.org/10.4230/LIPIcs.WABI.2023.4},
doi = {10.4230/LIPICS.WABI.2023.4},
timestamp = {Tue, 29 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ArastiM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Bohnenkamper23,
author = {Leonard Bohnenk{\"{a}}mper},
editor = {Djamal Belazzougui and
A{\"{\i}}da Ouangraoua},
title = {Bridging Disparate Views on the DCJ-Indel Model for a Capping-Free
Solution to the Natural Distance Problem},
booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI}
2023, September 4-6, 2023, Houston, TX, {USA}},
series = {LIPIcs},
volume = {273},
pages = {22:1--22:18},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2023},
url = {https://doi.org/10.4230/LIPIcs.WABI.2023.22},
doi = {10.4230/LIPICS.WABI.2023.22},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/Bohnenkamper23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BouryPR23,
author = {Th{\'{e}}o Boury and
Yann Ponty and
Vladimir Reinharz},
editor = {Djamal Belazzougui and
A{\"{\i}}da Ouangraoua},
title = {Automatic Exploration of the Natural Variability of {RNA} Non-Canonical
Geometric Patterns with a Parameterized Sampling Technique},
booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI}
2023, September 4-6, 2023, Houston, TX, {USA}},
series = {LIPIcs},
volume = {273},
pages = {20:1--20:22},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2023},
url = {https://doi.org/10.4230/LIPIcs.WABI.2023.20},
doi = {10.4230/LIPICS.WABI.2023.20},
timestamp = {Tue, 29 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BouryPR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/DaiRHM23,
author = {Junyan Dai and
Tobias Rubel and
Yunheng Han and
Erin K. Molloy},
editor = {Djamal Belazzougui and
A{\"{\i}}da Ouangraoua},
title = {Leveraging Constraints Plus Dynamic Programming for the Large Dollo
Parsimony Problem},
booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI}
2023, September 4-6, 2023, Houston, TX, {USA}},
series = {LIPIcs},
volume = {273},
pages = {5:1--5:23},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2023},
url = {https://doi.org/10.4230/LIPIcs.WABI.2023.5},
doi = {10.4230/LIPICS.WABI.2023.5},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/DaiRHM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/FanSKPP23,
author = {Jason Fan and
Noor Pratap Singh and
Jamshed Khan and
Giulio Ermanno Pibiri and
Rob Patro},
editor = {Djamal Belazzougui and
A{\"{\i}}da Ouangraoua},
title = {Fulgor: {A} Fast and Compact \{k-mer\} Index for Large-Scale Matching
and Color Queries},
booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI}
2023, September 4-6, 2023, Houston, TX, {USA}},
series = {LIPIcs},
volume = {273},
pages = {18:1--18:21},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2023},
url = {https://doi.org/10.4230/LIPIcs.WABI.2023.18},
doi = {10.4230/LIPICS.WABI.2023.18},
timestamp = {Tue, 29 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/FanSKPP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/FerdosiGK23,
author = {Mohsen Ferdosi and
Yuejun Ge and
Carl Kingsford},
editor = {Djamal Belazzougui and
A{\"{\i}}da Ouangraoua},
title = {Reinforcement Learning for Robotic Liquid Handler Planning},
booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI}
2023, September 4-6, 2023, Houston, TX, {USA}},
series = {LIPIcs},
volume = {273},
pages = {23:1--23:16},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2023},
url = {https://doi.org/10.4230/LIPIcs.WABI.2023.23},
doi = {10.4230/LIPICS.WABI.2023.23},
timestamp = {Tue, 29 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/FerdosiGK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/GrayWJ23,
author = {Mateo Gray and
Sebastian Will and
Hosna Jabbari},
editor = {Djamal Belazzougui and
A{\"{\i}}da Ouangraoua},
title = {SparseRNAFolD: Sparse {RNA} Pseudoknot-Free Folding Including Dangles},
booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI}
2023, September 4-6, 2023, Houston, TX, {USA}},
series = {LIPIcs},
volume = {273},
pages = {19:1--19:18},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2023},
url = {https://doi.org/10.4230/LIPIcs.WABI.2023.19},
doi = {10.4230/LIPICS.WABI.2023.19},
timestamp = {Tue, 29 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/GrayWJ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/GuQE23,
author = {Xinyu Gu and
Yuanyuan Qi and
Mohammed El{-}Kebir},
editor = {Djamal Belazzougui and
A{\"{\i}}da Ouangraoua},
title = {Balancing Minimum Free Energy and Codon Adaptation Index for Pareto
Optimal {RNA} Design},
booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI}
2023, September 4-6, 2023, Houston, TX, {USA}},
series = {LIPIcs},
volume = {273},
pages = {21:1--21:20},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2023},
url = {https://doi.org/10.4230/LIPIcs.WABI.2023.21},
doi = {10.4230/LIPICS.WABI.2023.21},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/GuQE23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/HanM23,
author = {Yunheng Han and
Erin K. Molloy},
editor = {Djamal Belazzougui and
A{\"{\i}}da Ouangraoua},
title = {Quartets Enable Statistically Consistent Estimation of Cell Lineage
Trees Under an Unbiased Error and Missingness Model (Abstract)},
booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI}
2023, September 4-6, 2023, Houston, TX, {USA}},
series = {LIPIcs},
volume = {273},
pages = {8:1--8:2},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2023},
url = {https://doi.org/10.4230/LIPIcs.WABI.2023.8},
doi = {10.4230/LIPICS.WABI.2023.8},
timestamp = {Tue, 29 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/HanM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/HongOKBBG23,
author = {Aaron Hong and
Marco Oliva and
Dominik K{\"{o}}ppl and
Hideo Bannai and
Christina Boucher and
Travis Gagie},
editor = {Djamal Belazzougui and
A{\"{\i}}da Ouangraoua},
title = {Acceleration of FM-Index Queries Through Prefix-Free Parsing},
booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI}
2023, September 4-6, 2023, Houston, TX, {USA}},
series = {LIPIcs},
volume = {273},
pages = {13:1--13:16},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2023},
url = {https://doi.org/10.4230/LIPIcs.WABI.2023.13},
doi = {10.4230/LIPICS.WABI.2023.13},
timestamp = {Mon, 10 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/HongOKBBG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Iersel0JM23,
author = {Leo van Iersel and
Mark Jones and
Esther Julien and
Yukihiro Murakami},
editor = {Djamal Belazzougui and
A{\"{\i}}da Ouangraoua},
title = {Making a Network Orchard by Adding Leaves},
booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI}
2023, September 4-6, 2023, Houston, TX, {USA}},
series = {LIPIcs},
volume = {273},
pages = {7:1--7:20},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2023},
url = {https://doi.org/10.4230/LIPIcs.WABI.2023.7},
doi = {10.4230/LIPICS.WABI.2023.7},
timestamp = {Tue, 29 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Iersel0JM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/KhanRDMP23,
author = {Jamshed Khan and
Tobias Rubel and
Laxman Dhulipala and
Erin K. Molloy and
Rob Patro},
editor = {Djamal Belazzougui and
A{\"{\i}}da Ouangraoua},
title = {Fast, Parallel, and Cache-Friendly Suffix Array Construction},
booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI}
2023, September 4-6, 2023, Houston, TX, {USA}},
series = {LIPIcs},
volume = {273},
pages = {16:1--16:21},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2023},
url = {https://doi.org/10.4230/LIPIcs.WABI.2023.16},
doi = {10.4230/LIPICS.WABI.2023.16},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/KhanRDMP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Przytycka23,
author = {Teresa M. Przytycka},
editor = {Djamal Belazzougui and
A{\"{\i}}da Ouangraoua},
title = {Algorithmic Approaches to Study Mutational Processes in Cancer (Invited
Talk)},
booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI}
2023, September 4-6, 2023, Houston, TX, {USA}},
series = {LIPIcs},
volume = {273},
pages = {1:1--1:2},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2023},
url = {https://doi.org/10.4230/LIPIcs.WABI.2023.1},
doi = {10.4230/LIPICS.WABI.2023.1},
timestamp = {Tue, 29 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Przytycka23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/QiuSK23,
author = {Yutong Qiu and
Yihang Shen and
Carl Kingsford},
editor = {Djamal Belazzougui and
A{\"{\i}}da Ouangraoua},
title = {Revisiting the Complexity of and Algorithms for the Graph Traversal
Edit Distance and Its Variants},
booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI}
2023, September 4-6, 2023, Houston, TX, {USA}},
series = {LIPIcs},
volume = {273},
pages = {11:1--11:22},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2023},
url = {https://doi.org/10.4230/LIPIcs.WABI.2023.11},
doi = {10.4230/LIPICS.WABI.2023.11},
timestamp = {Tue, 29 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/QiuSK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/RahmanDM23,
author = {Amatur Rahman and
Yoann Dufresne and
Paul Medvedev},
editor = {Djamal Belazzougui and
A{\"{\i}}da Ouangraoua},
title = {Compression Algorithm for Colored de Bruijn Graphs},
booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI}
2023, September 4-6, 2023, Houston, TX, {USA}},
series = {LIPIcs},
volume = {273},
pages = {17:1--17:14},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2023},
url = {https://doi.org/10.4230/LIPIcs.WABI.2023.17},
doi = {10.4230/LIPICS.WABI.2023.17},
timestamp = {Tue, 29 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/RahmanDM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/RajputCJ23,
author = {Jyotshna Rajput and
Ghanshyam Chandra and
Chirag Jain},
editor = {Djamal Belazzougui and
A{\"{\i}}da Ouangraoua},
title = {Co-Linear Chaining on Pangenome Graphs},
booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI}
2023, September 4-6, 2023, Houston, TX, {USA}},
series = {LIPIcs},
volume = {273},
pages = {12:1--12:18},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2023},
url = {https://doi.org/10.4230/LIPIcs.WABI.2023.12},
doi = {10.4230/LIPICS.WABI.2023.12},
timestamp = {Tue, 29 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/RajputCJ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/RoddurSE23,
author = {Mrinmoy Saha Roddur and
Sagi Snir and
Mohammed El{-}Kebir},
editor = {Djamal Belazzougui and
A{\"{\i}}da Ouangraoua},
title = {Inferring Temporally Consistent Migration Histories},
booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI}
2023, September 4-6, 2023, Houston, TX, {USA}},
series = {LIPIcs},
volume = {273},
pages = {9:1--9:22},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2023},
url = {https://doi.org/10.4230/LIPIcs.WABI.2023.9},
doi = {10.4230/LIPICS.WABI.2023.9},
timestamp = {Tue, 29 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/RoddurSE23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/RouzeMML23,
author = {Timoth{\'{e}} Rouz{\'{e}} and
Igor Martayan and
Camille Marchet and
Antoine Limasset},
editor = {Djamal Belazzougui and
A{\"{\i}}da Ouangraoua},
title = {Fractional Hitting Sets for Efficient and Lightweight Genomic Data
Sketching},
booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI}
2023, September 4-6, 2023, Houston, TX, {USA}},
series = {LIPIcs},
volume = {273},
pages = {15:1--15:27},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2023},
url = {https://doi.org/10.4230/LIPIcs.WABI.2023.15},
doi = {10.4230/LIPICS.WABI.2023.15},
timestamp = {Tue, 29 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/RouzeMML23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SchulzM23,
author = {Tizian Schulz and
Paul Medvedev},
editor = {Djamal Belazzougui and
A{\"{\i}}da Ouangraoua},
title = {Exact Sketch-Based Read Mapping},
booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI}
2023, September 4-6, 2023, Houston, TX, {USA}},
series = {LIPIcs},
volume = {273},
pages = {14:1--14:19},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2023},
url = {https://doi.org/10.4230/LIPIcs.WABI.2023.14},
doi = {10.4230/LIPICS.WABI.2023.14},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SchulzM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ShenLWW23,
author = {Chengze Shen and
Baqiao Liu and
Kelly P. Williams and
Tandy J. Warnow},
editor = {Djamal Belazzougui and
A{\"{\i}}da Ouangraoua},
title = {{EMMA:} Adding Sequences into a Constraint Alignment with High Accuracy
and Scalability (Abstract)},
booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI}
2023, September 4-6, 2023, Houston, TX, {USA}},
series = {LIPIcs},
volume = {273},
pages = {2:1--2:2},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2023},
url = {https://doi.org/10.4230/LIPIcs.WABI.2023.2},
doi = {10.4230/LIPICS.WABI.2023.2},
timestamp = {Tue, 29 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ShenLWW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/WedellSW23,
author = {Eleanor Wedell and
Chengze Shen and
Tandy J. Warnow},
editor = {Djamal Belazzougui and
A{\"{\i}}da Ouangraoua},
title = {{BATCH-SCAMPP:} Scaling Phylogenetic Placement Methods to Place Many
Sequences (Abstract)},
booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI}
2023, September 4-6, 2023, Houston, TX, {USA}},
series = {LIPIcs},
volume = {273},
pages = {3:1--3:2},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2023},
url = {https://doi.org/10.4230/LIPIcs.WABI.2023.3},
doi = {10.4230/LIPICS.WABI.2023.3},
timestamp = {Tue, 29 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/WedellSW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/X23,
editor = {Djamal Belazzougui and
A{\"{\i}}da Ouangraoua},
title = {Front Matter, Table of Contents, Preface, Conference Organization},
booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI}
2023, September 4-6, 2023, Houston, TX, {USA}},
series = {LIPIcs},
volume = {273},
pages = {0:1--0:14},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2023},
url = {https://doi.org/10.4230/LIPIcs.WABI.2023.0},
doi = {10.4230/LIPICS.WABI.2023.0},
timestamp = {Tue, 29 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/X23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/wabi/2023,
editor = {Djamal Belazzougui and
A{\"{\i}}da Ouangraoua},
title = {23rd International Workshop on Algorithms in Bioinformatics, {WABI}
2023, September 4-6, 2023, Houston, TX, {USA}},
series = {LIPIcs},
volume = {273},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2023},
url = {https://www.dagstuhl.de/dagpub/978-3-95977-294-5},
isbn = {978-3-95977-294-5},
timestamp = {Wed, 21 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/2023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/AgretCL22,
author = {Cl{\'{e}}ment Agret and
Bastien Cazaux and
Antoine Limasset},
editor = {Christina Boucher and
Sven Rahmann},
title = {Toward Optimal Fingerprint Indexing for Large Scale Genomics},
booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI}
2022, September 5-7, 2022, Potsdam, Germany},
series = {LIPIcs},
volume = {242},
pages = {25:1--25:15},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2022},
url = {https://doi.org/10.4230/LIPIcs.WABI.2022.25},
doi = {10.4230/LIPICS.WABI.2022.25},
timestamp = {Wed, 21 Aug 2024 22:46:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/AgretCL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BernardiniIJS22,
author = {Giulia Bernardini and
Leo van Iersel and
Esther Julien and
Leen Stougie},
editor = {Christina Boucher and
Sven Rahmann},
title = {Reconstructing Phylogenetic Networks via Cherry Picking and Machine
Learning},
booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI}
2022, September 5-7, 2022, Potsdam, Germany},
series = {LIPIcs},
volume = {242},
pages = {16:1--16:22},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2022},
url = {https://doi.org/10.4230/LIPIcs.WABI.2022.16},
doi = {10.4230/LIPICS.WABI.2022.16},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BernardiniIJS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BonnetMD22,
author = {Konstantinn Bonnet and
Tobias Marschall and
Daniel Doerr},
editor = {Christina Boucher and
Sven Rahmann},
title = {Constructing Founder Sets Under Allelic and Non-Allelic Homologous
Recombination},
booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI}
2022, September 5-7, 2022, Potsdam, Germany},
series = {LIPIcs},
volume = {242},
pages = {6:1--6:23},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2022},
url = {https://doi.org/10.4230/LIPIcs.WABI.2022.6},
doi = {10.4230/LIPICS.WABI.2022.6},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BonnetMD22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BragaBKS22,
author = {Mar{\'{\i}}lia D. V. Braga and
Leonie R. Brockmann and
Katharina Klerx and
Jens Stoye},
editor = {Christina Boucher and
Sven Rahmann},
title = {A Linear Time Algorithm for an Extended Version of the Breakpoint
Double Distance},
booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI}
2022, September 5-7, 2022, Potsdam, Germany},
series = {LIPIcs},
volume = {242},
pages = {13:1--13:16},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2022},
url = {https://doi.org/10.4230/LIPIcs.WABI.2022.13},
doi = {10.4230/LIPICS.WABI.2022.13},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BragaBKS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ChenS22,
author = {Ke Chen and
Mingfu Shao},
editor = {Christina Boucher and
Sven Rahmann},
title = {Locality-Sensitive Bucketing Functions for the Edit Distance},
booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI}
2022, September 5-7, 2022, Potsdam, Germany},
series = {LIPIcs},
volume = {242},
pages = {22:1--22:14},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2022},
url = {https://doi.org/10.4230/LIPIcs.WABI.2022.22},
doi = {10.4230/LIPICS.WABI.2022.22},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ChenS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/GasconE22,
author = {Mathieu Gascon and
Nadia El{-}Mabrouk},
editor = {Christina Boucher and
Sven Rahmann},
title = {Non-Binary Tree Reconciliation with Endosymbiotic Gene Transfer},
booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI}
2022, September 5-7, 2022, Potsdam, Germany},
series = {LIPIcs},
volume = {242},
pages = {5:1--5:20},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2022},
url = {https://doi.org/10.4230/LIPIcs.WABI.2022.5},
doi = {10.4230/LIPICS.WABI.2022.5},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/GasconE22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/GibneyTA22,
author = {Daniel Gibney and
Sharma V. Thankachan and
Srinivas Aluru},
editor = {Christina Boucher and
Sven Rahmann},
title = {Feasibility of Flow Decomposition with Subpath Constraints in Linear
Time},
booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI}
2022, September 5-7, 2022, Potsdam, Germany},
series = {LIPIcs},
volume = {242},
pages = {17:1--17:16},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2022},
url = {https://doi.org/10.4230/LIPIcs.WABI.2022.17},
doi = {10.4230/LIPICS.WABI.2022.17},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/GibneyTA22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/GogaB22,
author = {Adri{\'{a}}n Goga and
Andrej Bal{\'{a}}z},
editor = {Christina Boucher and
Sven Rahmann},
title = {Prefix-Free Parsing for Building Large Tunnelled Wheeler Graphs},
booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI}
2022, September 5-7, 2022, Potsdam, Germany},
series = {LIPIcs},
volume = {242},
pages = {18:1--18:12},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2022},
url = {https://doi.org/10.4230/LIPIcs.WABI.2022.18},
doi = {10.4230/LIPICS.WABI.2022.18},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/GogaB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/GuerriniCGLRT22,
author = {Veronica Guerrini and
Alessio Conte and
Roberto Grossi and
Gianni Liti and
Giovanna Rosone and
Lorenzo Tattini},
editor = {Christina Boucher and
Sven Rahmann},
title = {phyBWT: Alignment-Free Phylogeny via eBWT Positional Clustering},
booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI}
2022, September 5-7, 2022, Potsdam, Germany},
series = {LIPIcs},
volume = {242},
pages = {23:1--23:19},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2022},
url = {https://doi.org/10.4230/LIPIcs.WABI.2022.23},
doi = {10.4230/LIPICS.WABI.2022.23},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/GuerriniCGLRT22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/LiptakMP22,
author = {Zsuzsanna Lipt{\'{a}}k and
Francesco Masillo and
Simon J. Puglisi},
editor = {Christina Boucher and
Sven Rahmann},
title = {Suffix Sorting via Matching Statistics},
booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI}
2022, September 5-7, 2022, Potsdam, Germany},
series = {LIPIcs},
volume = {242},
pages = {20:1--20:15},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2022},
url = {https://doi.org/10.4230/LIPIcs.WABI.2022.20},
doi = {10.4230/LIPICS.WABI.2022.20},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/LiptakMP22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/LiuW22,
author = {Baqiao Liu and
Tandy J. Warnow},
editor = {Christina Boucher and
Sven Rahmann},
title = {Fast and Accurate Species Trees from Weighted Internode Distances},
booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI}
2022, September 5-7, 2022, Potsdam, Germany},
series = {LIPIcs},
volume = {242},
pages = {8:1--8:24},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2022},
url = {https://doi.org/10.4230/LIPIcs.WABI.2022.8},
doi = {10.4230/LIPICS.WABI.2022.8},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/LiuW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MarchandWBBP22,
author = {Bertrand Marchand and
Sebastian Will and
Sarah J. Berkemer and
Laurent Bulteau and
Yann Ponty},
editor = {Christina Boucher and
Sven Rahmann},
title = {Automated Design of Dynamic Programming Schemes for {RNA} Folding
with Pseudoknots},
booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI}
2022, September 5-7, 2022, Potsdam, Germany},
series = {LIPIcs},
volume = {242},
pages = {7:1--7:24},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2022},
url = {https://doi.org/10.4230/LIPIcs.WABI.2022.7},
doi = {10.4230/LIPICS.WABI.2022.7},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/MarchandWBBP22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MunKL22,
author = {Taher Mun and
Naga Sai Kavya Vaddadi and
Ben Langmead},
editor = {Christina Boucher and
Sven Rahmann},
title = {Pangenomic Genotyping with the Marker Array},
booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI}
2022, September 5-7, 2022, Potsdam, Germany},
series = {LIPIcs},
volume = {242},
pages = {19:1--19:17},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2022},
url = {https://doi.org/10.4230/LIPIcs.WABI.2022.19},
doi = {10.4230/LIPICS.WABI.2022.19},
timestamp = {Wed, 18 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/MunKL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/OzeryZZ22,
author = {Eden Ozery and
Meirav Zehavi and
Michal Ziv{-}Ukelson},
editor = {Christina Boucher and
Sven Rahmann},
title = {New Algorithms for Structure Informed Genome Rearrangement},
booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI}
2022, September 5-7, 2022, Potsdam, Germany},
series = {LIPIcs},
volume = {242},
pages = {11:1--11:19},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2022},
url = {https://doi.org/10.4230/LIPIcs.WABI.2022.11},
doi = {10.4230/LIPICS.WABI.2022.11},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/OzeryZZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Pibiri22,
author = {Giulio Ermanno Pibiri},
editor = {Christina Boucher and
Sven Rahmann},
title = {On Weighted k-mer Dictionaries},
booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI}
2022, September 5-7, 2022, Potsdam, Germany},
series = {LIPIcs},
volume = {242},
pages = {9:1--9:20},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2022},
url = {https://doi.org/10.4230/LIPIcs.WABI.2022.9},
doi = {10.4230/LIPICS.WABI.2022.9},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Pibiri22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/RubertB22,
author = {Diego P. Rubert and
Mar{\'{\i}}lia D. V. Braga},
editor = {Christina Boucher and
Sven Rahmann},
title = {Gene Orthology Inference via Large-Scale Rearrangements for Partially
Assembled Genomes},
booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI}
2022, September 5-7, 2022, Potsdam, Germany},
series = {LIPIcs},
volume = {242},
pages = {24:1--24:22},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2022},
url = {https://doi.org/10.4230/LIPIcs.WABI.2022.24},
doi = {10.4230/LIPICS.WABI.2022.24},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/RubertB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Salmela22,
author = {Leena Salmela},
editor = {Christina Boucher and
Sven Rahmann},
title = {Efficient Solutions to Biological Problems Using de Bruijn Graphs
(Invited Talk)},
booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI}
2022, September 5-7, 2022, Potsdam, Germany},
series = {LIPIcs},
volume = {242},
pages = {1:1--1:2},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2022},
url = {https://doi.org/10.4230/LIPIcs.WABI.2022.1},
doi = {10.4230/LIPICS.WABI.2022.1},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Salmela22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SanaullahZZ22,
author = {Ahsan Sanaullah and
Degui Zhi and
Shaoije Zhang},
editor = {Christina Boucher and
Sven Rahmann},
title = {Haplotype Threading Using the Positional Burrows-Wheeler Transform},
booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI}
2022, September 5-7, 2022, Potsdam, Germany},
series = {LIPIcs},
volume = {242},
pages = {4:1--4:14},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2022},
url = {https://doi.org/10.4230/LIPIcs.WABI.2022.4},
doi = {10.4230/LIPICS.WABI.2022.4},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SanaullahZZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SanchezL22,
author = {Alitzel L{\'{o}}pez S{\'{a}}nchez and
Manuel Lafond},
editor = {Christina Boucher and
Sven Rahmann},
title = {Predicting Horizontal Gene Transfers with Perfect Transfer Networks},
booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI}
2022, September 5-7, 2022, Potsdam, Germany},
series = {LIPIcs},
volume = {242},
pages = {3:1--3:22},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2022},
url = {https://doi.org/10.4230/LIPIcs.WABI.2022.3},
doi = {10.4230/LIPICS.WABI.2022.3},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SanchezL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SchmidtA22,
author = {Sebastian S. Schmidt and
Jarno N. Alanko},
editor = {Christina Boucher and
Sven Rahmann},
title = {Eulertigs: Minimum Plain Text Representation of k-mer Sets Without
Repetitions in Linear Time},
booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI}
2022, September 5-7, 2022, Potsdam, Germany},
series = {LIPIcs},
volume = {242},
pages = {2:1--2:21},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2022},
url = {https://doi.org/10.4230/LIPIcs.WABI.2022.2},
doi = {10.4230/LIPICS.WABI.2022.2},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SchmidtA22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ShibuyaBK22,
author = {Yoshihiro Shibuya and
Djamal Belazzougui and
Gregory Kucherov},
editor = {Christina Boucher and
Sven Rahmann},
title = {Efficient Reconciliation of Genomic Datasets of High Similarity},
booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI}
2022, September 5-7, 2022, Potsdam, Germany},
series = {LIPIcs},
volume = {242},
pages = {14:1--14:14},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2022},
url = {https://doi.org/10.4230/LIPIcs.WABI.2022.14},
doi = {10.4230/LIPICS.WABI.2022.14},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ShibuyaBK22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SimonaitisR22,
author = {Pijus Simonaitis and
Benjamin J. Raphael},
editor = {Christina Boucher and
Sven Rahmann},
title = {A Maximum Parsimony Principle for Multichromosomal Complex Genome
Rearrangements},
booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI}
2022, September 5-7, 2022, Potsdam, Germany},
series = {LIPIcs},
volume = {242},
pages = {21:1--21:22},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2022},
url = {https://doi.org/10.4230/LIPIcs.WABI.2022.21},
doi = {10.4230/LIPICS.WABI.2022.21},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SimonaitisR22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SuzukiM22,
author = {Yoshihiko Suzuki and
Gene Myers},
editor = {Christina Boucher and
Sven Rahmann},
title = {Accurate k-mer Classification Using Read Profiles},
booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI}
2022, September 5-7, 2022, Potsdam, Germany},
series = {LIPIcs},
volume = {242},
pages = {10:1--10:20},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2022},
url = {https://doi.org/10.4230/LIPIcs.WABI.2022.10},
doi = {10.4230/LIPICS.WABI.2022.10},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SuzukiM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/WeiK22,
author = {Wei Wei and
David Koslicki},
editor = {Christina Boucher and
Sven Rahmann},
title = {WGSUniFrac: Applying UniFrac Metric to Whole Genome Shotgun Data},
booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI}
2022, September 5-7, 2022, Potsdam, Germany},
series = {LIPIcs},
volume = {242},
pages = {15:1--15:22},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2022},
url = {https://doi.org/10.4230/LIPIcs.WABI.2022.15},
doi = {10.4230/LIPICS.WABI.2022.15},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/WeiK22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ZentgrafR22,
author = {Jens Zentgraf and
Sven Rahmann},
editor = {Christina Boucher and
Sven Rahmann},
title = {Fast Gapped k-mer Counting with Subdivided Multi-Way Bucketed Cuckoo
Hash Tables},
booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI}
2022, September 5-7, 2022, Potsdam, Germany},
series = {LIPIcs},
volume = {242},
pages = {12:1--12:20},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2022},
url = {https://doi.org/10.4230/LIPIcs.WABI.2022.12},
doi = {10.4230/LIPICS.WABI.2022.12},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ZentgrafR22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/wabi/2022,
editor = {Christina Boucher and
Sven Rahmann},
title = {22nd International Workshop on Algorithms in Bioinformatics, {WABI}
2022, September 5-7, 2022, Potsdam, Germany},
series = {LIPIcs},
volume = {242},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2022},
url = {https://www.dagstuhl.de/dagpub/978-3-95977-243-3},
isbn = {978-3-95977-243-3},
timestamp = {Wed, 21 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/2022.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BoriaGPM21,
author = {Nicolas Boria and
Laurent Gourv{\`{e}}s and
Vangelis Th. Paschos and
J{\'{e}}r{\^{o}}me Monnot},
editor = {Alessandra Carbone and
Mohammed El{-}Kebir},
title = {The Maximum Duo-Preservation String Mapping Problem with Bounded Alphabet},
booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI}
2021, August 2-4, 2021, Virtual Conference},
series = {LIPIcs},
volume = {201},
pages = {5:1--5:12},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2021},
url = {https://doi.org/10.4230/LIPIcs.WABI.2021.5},
doi = {10.4230/LIPICS.WABI.2021.5},
timestamp = {Wed, 21 Aug 2024 22:46:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BoriaGPM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BoroojenyRC21,
author = {Ali Ebrahimpour Boroojeny and
Sanjay V. Rajopadhye and
Hamidreza Chitsaz},
editor = {Alessandra Carbone and
Mohammed El{-}Kebir},
title = {BPPart: {RNA-RNA} Interaction Partition Function in the Absence of
Entropy},
booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI}
2021, August 2-4, 2021, Virtual Conference},
series = {LIPIcs},
volume = {201},
pages = {14:1--14:24},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2021},
url = {https://doi.org/10.4230/LIPIcs.WABI.2021.14},
doi = {10.4230/LIPICS.WABI.2021.14},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BoroojenyRC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/FanCP21,
author = {Jason Fan and
Skylar Chan and
Rob Patro},
editor = {Alessandra Carbone and
Mohammed El{-}Kebir},
title = {Perplexity: Evaluating Transcript Abundance Estimation in the Absence
of Ground Truth},
booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI}
2021, August 2-4, 2021, Virtual Conference},
series = {LIPIcs},
volume = {201},
pages = {4:1--4:22},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2021},
url = {https://doi.org/10.4230/LIPIcs.WABI.2021.4},
doi = {10.4230/LIPICS.WABI.2021.4},
timestamp = {Thu, 22 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/FanCP21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/GagieGM21,
author = {Travis Gagie and
Garance Gourdel and
Giovanni Manzini},
editor = {Alessandra Carbone and
Mohammed El{-}Kebir},
title = {Compressing and Indexing Aligned Readsets},
booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI}
2021, August 2-4, 2021, Virtual Conference},
series = {LIPIcs},
volume = {201},
pages = {13:1--13:21},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2021},
url = {https://doi.org/10.4230/LIPIcs.WABI.2021.13},
doi = {10.4230/LIPICS.WABI.2021.13},
timestamp = {Thu, 22 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/GagieGM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/IsericAHN21,
author = {Hamza Iseric and
Can Alkan and
Faraz Hach and
Ibrahim Numanagic},
editor = {Alessandra Carbone and
Mohammed El{-}Kebir},
title = {{BISER:} Fast Characterization of Segmental Duplication Structure
in Multiple Genome Assemblies},
booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI}
2021, August 2-4, 2021, Virtual Conference},
series = {LIPIcs},
volume = {201},
pages = {15:1--15:18},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2021},
url = {https://doi.org/10.4230/LIPIcs.WABI.2021.15},
doi = {10.4230/LIPICS.WABI.2021.15},
timestamp = {Thu, 22 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/IsericAHN21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/JewLSS21,
author = {Brandon Jew and
Jiajin Li and
Sriram Sankararaman and
Jae Hoon Sul},
editor = {Alessandra Carbone and
Mohammed El{-}Kebir},
title = {An Efficient Linear Mixed Model Framework for Meta-Analytic Association
Studies Across Multiple Contexts},
booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI}
2021, August 2-4, 2021, Virtual Conference},
series = {LIPIcs},
volume = {201},
pages = {10:1--10:17},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2021},
url = {https://doi.org/10.4230/LIPIcs.WABI.2021.10},
doi = {10.4230/LIPICS.WABI.2021.10},
timestamp = {Thu, 22 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/JewLSS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/KitayaS21,
author = {Kazushi Kitaya and
Tetsuo Shibuya},
editor = {Alessandra Carbone and
Mohammed El{-}Kebir},
title = {Compression of Multiple k-Mer Sets by Iterative {SPSS} Decomposition},
booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI}
2021, August 2-4, 2021, Virtual Conference},
series = {LIPIcs},
volume = {201},
pages = {12:1--12:17},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2021},
url = {https://doi.org/10.4230/LIPIcs.WABI.2021.12},
doi = {10.4230/LIPICS.WABI.2021.12},
timestamp = {Thu, 22 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/KitayaS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/KriegerK21,
author = {Spencer Krieger and
John D. Kececioglu},
editor = {Alessandra Carbone and
Mohammed El{-}Kebir},
title = {Fast Approximate Shortest Hyperpaths for Inferring Pathways in Cell
Signaling Hypergraphs},
booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI}
2021, August 2-4, 2021, Virtual Conference},
series = {LIPIcs},
volume = {201},
pages = {20:1--20:20},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2021},
url = {https://doi.org/10.4230/LIPIcs.WABI.2021.20},
doi = {10.4230/LIPICS.WABI.2021.20},
timestamp = {Thu, 22 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/KriegerK21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/LeMayWL21,
author = {Matthew LeMay and
Yi{-}Chieh Wu and
Ran Libeskind{-}Hadas},
editor = {Alessandra Carbone and
Mohammed El{-}Kebir},
title = {The Most Parsimonious Reconciliation Problem in the Presence of Incomplete
Lineage Sorting and Hybridization Is NP-Hard},
booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI}
2021, August 2-4, 2021, Virtual Conference},
series = {LIPIcs},
volume = {201},
pages = {1:1--1:10},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2021},
url = {https://doi.org/10.4230/LIPIcs.WABI.2021.1},
doi = {10.4230/LIPICS.WABI.2021.1},
timestamp = {Thu, 22 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/LeMayWL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MarchandPB21,
author = {Bertrand Marchand and
Yann Ponty and
Laurent Bulteau},
editor = {Alessandra Carbone and
Mohammed El{-}Kebir},
title = {Tree Diet: Reducing the Treewidth to Unlock {FPT} Algorithms in {RNA}
Bioinformatics},
booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI}
2021, August 2-4, 2021, Virtual Conference},
series = {LIPIcs},
volume = {201},
pages = {7:1--7:23},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2021},
url = {https://doi.org/10.4230/LIPIcs.WABI.2021.7},
doi = {10.4230/LIPICS.WABI.2021.7},
timestamp = {Thu, 22 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/MarchandPB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/NakagawaOS21,
author = {Yoshiki Nakagawa and
Satsuya Ohata and
Kana Shimizu},
editor = {Alessandra Carbone and
Mohammed El{-}Kebir},
title = {Efficient Privacy-Preserving Variable-Length Substring Match for Genome
Sequence},
booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI}
2021, August 2-4, 2021, Virtual Conference},
series = {LIPIcs},
volume = {201},
pages = {2:1--2:23},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2021},
url = {https://doi.org/10.4230/LIPIcs.WABI.2021.2},
doi = {10.4230/LIPICS.WABI.2021.2},
timestamp = {Thu, 22 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/NakagawaOS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/NaseriYZZ21,
author = {Ardalan Naseri and
William Yue and
Shaojie Zhang and
Degui Zhi},
editor = {Alessandra Carbone and
Mohammed El{-}Kebir},
title = {Efficient Haplotype Block Matching in Bi-Directional {PBWT}},
booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI}
2021, August 2-4, 2021, Virtual Conference},
series = {LIPIcs},
volume = {201},
pages = {19:1--19:13},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2021},
url = {https://doi.org/10.4230/LIPIcs.WABI.2021.19},
doi = {10.4230/LIPICS.WABI.2021.19},
timestamp = {Thu, 22 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/NaseriYZZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SashittalZE21,
author = {Palash Sashittal and
Simone Zaccaria and
Mohammed El{-}Kebir},
editor = {Alessandra Carbone and
Mohammed El{-}Kebir},
title = {Parsimonious Clone Tree Reconciliation in Cancer},
booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI}
2021, August 2-4, 2021, Virtual Conference},
series = {LIPIcs},
volume = {201},
pages = {9:1--9:21},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2021},
url = {https://doi.org/10.4230/LIPIcs.WABI.2021.9},
doi = {10.4230/LIPICS.WABI.2021.9},
timestamp = {Thu, 22 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SashittalZE21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ScornavaccaW21,
author = {C{\'{e}}line Scornavacca and
Mathias Weller},
editor = {Alessandra Carbone and
Mohammed El{-}Kebir},
title = {Treewidth-Based Algorithms for the Small Parsimony Problem on Networks},
booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI}
2021, August 2-4, 2021, Virtual Conference},
series = {LIPIcs},
volume = {201},
pages = {6:1--6:21},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2021},
url = {https://doi.org/10.4230/LIPIcs.WABI.2021.6},
doi = {10.4230/LIPICS.WABI.2021.6},
timestamp = {Thu, 22 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ScornavaccaW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ShibuyaBK21,
author = {Yoshihiro Shibuya and
Djamal Belazzougui and
Gregory Kucherov},
editor = {Alessandra Carbone and
Mohammed El{-}Kebir},
title = {Space-Efficient Representation of Genomic k-Mer Count Tables},
booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI}
2021, August 2-4, 2021, Virtual Conference},
series = {LIPIcs},
volume = {201},
pages = {8:1--8:19},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2021},
url = {https://doi.org/10.4230/LIPIcs.WABI.2021.8},
doi = {10.4230/LIPICS.WABI.2021.8},
timestamp = {Thu, 22 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ShibuyaBK21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/WangMSS21,
author = {Yishu Wang and
Arnaud Mary and
Marie{-}France Sagot and
Blerina Sinaimeri},
editor = {Alessandra Carbone and
Mohammed El{-}Kebir},
title = {Making Sense of a Cophylogeny Output: Efficient Listing of Representative
Reconciliations},
booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI}
2021, August 2-4, 2021, Virtual Conference},
series = {LIPIcs},
volume = {201},
pages = {3:1--3:18},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2021},
url = {https://doi.org/10.4230/LIPIcs.WABI.2021.3},
doi = {10.4230/LIPICS.WABI.2021.3},
timestamp = {Wed, 06 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/WangMSS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/WawerkaDR0021,
author = {Marcin Wawerka and
Dawid Dabkowski and
Natalia Rutecka and
Agnieszka Mykowiecka and
Pawel G{\'{o}}recki},
editor = {Alessandra Carbone and
Mohammed El{-}Kebir},
title = {Conflict Resolution Algorithms for Deep Coalescence Phylogenetic Networks},
booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI}
2021, August 2-4, 2021, Virtual Conference},
series = {LIPIcs},
volume = {201},
pages = {17:1--17:21},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2021},
url = {https://doi.org/10.4230/LIPIcs.WABI.2021.17},
doi = {10.4230/LIPICS.WABI.2021.17},
timestamp = {Thu, 22 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/WawerkaDR0021.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Wickramarachchi21,
author = {Anuradha Wickramarachchi and
Yu Lin},
editor = {Alessandra Carbone and
Mohammed El{-}Kebir},
title = {LRBinner: Binning Long Reads in Metagenomics Datasets},
booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI}
2021, August 2-4, 2021, Virtual Conference},
series = {LIPIcs},
volume = {201},
pages = {11:1--11:18},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2021},
url = {https://doi.org/10.4230/LIPIcs.WABI.2021.11},
doi = {10.4230/LIPICS.WABI.2021.11},
timestamp = {Fri, 08 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Wickramarachchi21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/WilliamsTM21,
author = {Lucia Williams and
Alexandru I. Tomescu and
Brendan Mumey},
editor = {Alessandra Carbone and
Mohammed El{-}Kebir},
title = {Flow Decomposition with Subpath Constraints},
booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI}
2021, August 2-4, 2021, Virtual Conference},
series = {LIPIcs},
volume = {201},
pages = {16:1--16:15},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2021},
url = {https://doi.org/10.4230/LIPIcs.WABI.2021.16},
doi = {10.4230/LIPICS.WABI.2021.16},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/WilliamsTM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/X21,
editor = {Alessandra Carbone and
Mohammed El{-}Kebir},
title = {Front Matter, Table of Contents, Preface, Conference Organization},
booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI}
2021, August 2-4, 2021, Virtual Conference},
series = {LIPIcs},
volume = {201},
pages = {0:1--0:10},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2021},
url = {https://doi.org/10.4230/LIPIcs.WABI.2021.0},
doi = {10.4230/LIPICS.WABI.2021.0},
timestamp = {Thu, 22 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/X21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ZeiraMR21,
author = {Ron Zeira and
Geoffrey Mon and
Benjamin J. Raphael},
editor = {Alessandra Carbone and
Mohammed El{-}Kebir},
title = {Genome Halving and Aliquoting Under the Copy Number Distance},
booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI}
2021, August 2-4, 2021, Virtual Conference},
series = {LIPIcs},
volume = {201},
pages = {18:1--18:25},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2021},
url = {https://doi.org/10.4230/LIPIcs.WABI.2021.18},
doi = {10.4230/LIPICS.WABI.2021.18},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/ZeiraMR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/wabi/2021,
editor = {Alessandra Carbone and
Mohammed El{-}Kebir},
title = {21st International Workshop on Algorithms in Bioinformatics, {WABI}
2021, August 2-4, 2021, Virtual Conference},
series = {LIPIcs},
volume = {201},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2021},
url = {https://www.dagstuhl.de/dagpub/978-3-95977-200-6},
isbn = {978-3-95977-200-6},
timestamp = {Wed, 21 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/2021.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/CantoneFP20,
author = {Domenico Cantone and
Simone Faro and
Arianna Pavone},
editor = {Carl Kingsford and
Nadia Pisanti},
title = {Sequence Searching Allowing for Non-Overlapping Adjacent Unbalanced
Translocations},
booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI}
2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)},
series = {LIPIcs},
volume = {172},
pages = {19:1--19:14},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2020},
url = {https://doi.org/10.4230/LIPIcs.WABI.2020.19},
doi = {10.4230/LIPICS.WABI.2020.19},
timestamp = {Wed, 21 Aug 2024 22:46:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/CantoneFP20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/DufresneSMLCC20,
author = {Yoann Dufresne and
Chen Sun and
Pierre Marijon and
Dominique Lavenier and
C{\'{e}}dric Chauve and
Rayan Chikhi},
editor = {Carl Kingsford and
Nadia Pisanti},
title = {A Graph-Theoretic Barcode Ordering Model for Linked-Reads},
booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI}
2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)},
series = {LIPIcs},
volume = {172},
pages = {11:1--11:17},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2020},
url = {https://doi.org/10.4230/LIPIcs.WABI.2020.11},
doi = {10.4230/LIPICS.WABI.2020.11},
timestamp = {Sat, 06 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/DufresneSMLCC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/FrisbyL20,
author = {Trevor S. Frisby and
Christopher J. Langmead},
editor = {Carl Kingsford and
Nadia Pisanti},
title = {Fold Family-Regularized Bayesian Optimization for Directed Protein
Evolution},
booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI}
2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)},
series = {LIPIcs},
volume = {172},
pages = {18:1--18:17},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2020},
url = {https://doi.org/10.4230/LIPIcs.WABI.2020.18},
doi = {10.4230/LIPICS.WABI.2020.18},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/FrisbyL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/GaneshS20,
author = {Arun Ganesh and
Aaron Sy},
editor = {Carl Kingsford and
Nadia Pisanti},
title = {Near-Linear Time Edit Distance for Indel Channels},
booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI}
2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)},
series = {LIPIcs},
volume = {172},
pages = {17:1--17:18},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2020},
url = {https://doi.org/10.4230/LIPIcs.WABI.2020.17},
doi = {10.4230/LIPICS.WABI.2020.17},
timestamp = {Wed, 26 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/GaneshS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/GatterLDHS20,
author = {Thomas Gatter and
Sarah von L{\"{o}}hneysen and
Polina Drozdova and
Tom Hartmann and
Peter F. Stadler},
editor = {Carl Kingsford and
Nadia Pisanti},
title = {Economic Genome Assembly from Low Coverage Illumina and Nanopore Data},
booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI}
2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)},
series = {LIPIcs},
volume = {172},
pages = {10:1--10:22},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2020},
url = {https://doi.org/10.4230/LIPIcs.WABI.2020.10},
doi = {10.4230/LIPICS.WABI.2020.10},
timestamp = {Thu, 16 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/GatterLDHS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/JahnBZ20,
author = {Katharina Jahn and
Niko Beerenwinkel and
Louxin Zhang},
editor = {Carl Kingsford and
Nadia Pisanti},
title = {The Bourque Distances for Mutation Trees of Cancers},
booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI}
2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)},
series = {LIPIcs},
volume = {172},
pages = {14:1--14:22},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2020},
url = {https://doi.org/10.4230/LIPIcs.WABI.2020.14},
doi = {10.4230/LIPICS.WABI.2020.14},
timestamp = {Thu, 09 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/JahnBZ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MaZK20,
author = {Cong Ma and
Hongyu Zheng and
Carl Kingsford},
editor = {Carl Kingsford and
Nadia Pisanti},
title = {Exact Transcript Quantification Over Splice Graphs},
booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI}
2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)},
series = {LIPIcs},
volume = {172},
pages = {12:1--12:18},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2020},
url = {https://doi.org/10.4230/LIPIcs.WABI.2020.12},
doi = {10.4230/LIPICS.WABI.2020.12},
timestamp = {Wed, 22 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/MaZK20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MakinenCENT20,
author = {Veli M{\"{a}}kinen and
Bastien Cazaux and
Massimo Equi and
Tuukka Norri and
Alexandru I. Tomescu},
editor = {Carl Kingsford and
Nadia Pisanti},
title = {Linear Time Construction of Indexable Founder Block Graphs},
booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI}
2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)},
series = {LIPIcs},
volume = {172},
pages = {7:1--7:18},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2020},
url = {https://doi.org/10.4230/LIPIcs.WABI.2020.7},
doi = {10.4230/LIPICS.WABI.2020.7},
timestamp = {Thu, 16 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/MakinenCENT20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Mallawaarachchi20,
author = {Vijini Mallawaarachchi and
Anuradha Wickramarachchi and
Yu Lin},
editor = {Carl Kingsford and
Nadia Pisanti},
title = {GraphBin2: Refined and Overlapped Binning of Metagenomic Contigs Using
Assembly Graphs},
booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI}
2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)},
series = {LIPIcs},
volume = {172},
pages = {8:1--8:21},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2020},
url = {https://doi.org/10.4230/LIPIcs.WABI.2020.8},
doi = {10.4230/LIPICS.WABI.2020.8},
timestamp = {Thu, 16 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Mallawaarachchi20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Mukherjee0SB20,
author = {Kingshuk Mukherjee and
Massimiliano Rossi and
Leena Salmela and
Christina Boucher},
editor = {Carl Kingsford and
Nadia Pisanti},
title = {Fast and Efficient Rmap Assembly Using the Bi-Labelled de Bruijn Graph},
booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI}
2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)},
series = {LIPIcs},
volume = {172},
pages = {9:1--9:16},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2020},
url = {https://doi.org/10.4230/LIPIcs.WABI.2020.9},
doi = {10.4230/LIPICS.WABI.2020.9},
timestamp = {Mon, 10 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Mukherjee0SB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/RahmanCM20,
author = {Amatur Rahman and
Rayan Chikhi and
Paul Medvedev},
editor = {Carl Kingsford and
Nadia Pisanti},
title = {Disk Compression of k-mer Sets},
booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI}
2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)},
series = {LIPIcs},
volume = {172},
pages = {16:1--16:18},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2020},
url = {https://doi.org/10.4230/LIPIcs.WABI.2020.16},
doi = {10.4230/LIPICS.WABI.2020.16},
timestamp = {Wed, 26 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/RahmanCM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/RubertMB20,
author = {Diego P. Rubert and
F{\'{a}}bio Viduani Martinez and
Mar{\'{\i}}lia D. V. Braga},
editor = {Carl Kingsford and
Nadia Pisanti},
title = {Natural Family-Free Genomic Distance},
booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI}
2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)},
series = {LIPIcs},
volume = {172},
pages = {3:1--3:23},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2020},
url = {https://doi.org/10.4230/LIPIcs.WABI.2020.3},
doi = {10.4230/LIPICS.WABI.2020.3},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/RubertMB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SchrinnerGWSSK20,
author = {Sven Schrinner and
Manish Goel and
Michael Wulfert and
Philipp Spohr and
Korbinian Schneeberger and
Gunnar W. Klau},
editor = {Carl Kingsford and
Nadia Pisanti},
title = {The Longest Run Subsequence Problem},
booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI}
2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)},
series = {LIPIcs},
volume = {172},
pages = {6:1--6:13},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2020},
url = {https://doi.org/10.4230/LIPIcs.WABI.2020.6},
doi = {10.4230/LIPICS.WABI.2020.6},
timestamp = {Thu, 16 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SchrinnerGWSSK20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SelbachKGBM20,
author = {Leonie Selbach and
Tobias Kowalski and
Klaus Gerwert and
Maike Buchin and
Axel Mosig},
editor = {Carl Kingsford and
Nadia Pisanti},
title = {Shape Decomposition Algorithms for Laser Capture Microdissection},
booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI}
2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)},
series = {LIPIcs},
volume = {172},
pages = {13:1--13:17},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2020},
url = {https://doi.org/10.4230/LIPIcs.WABI.2020.13},
doi = {10.4230/LIPICS.WABI.2020.13},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SelbachKGBM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/WeberE20,
author = {Leah L. Weber and
Mohammed El{-}Kebir},
editor = {Carl Kingsford and
Nadia Pisanti},
title = {Phyolin: Identifying a Linear Perfect Phylogeny in Single-Cell {DNA}
Sequencing Data of Tumors},
booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI}
2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)},
series = {LIPIcs},
volume = {172},
pages = {5:1--5:14},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2020},
url = {https://doi.org/10.4230/LIPIcs.WABI.2020.5},
doi = {10.4230/LIPICS.WABI.2020.5},
timestamp = {Wed, 26 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/WeberE20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/X20,
editor = {Carl Kingsford and
Nadia Pisanti},
title = {Front Matter, Table of Contents, Preface, Conference Organization},
booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI}
2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)},
series = {LIPIcs},
volume = {172},
pages = {0:1--0:10},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2020},
url = {https://doi.org/10.4230/LIPIcs.WABI.2020.0},
doi = {10.4230/LIPICS.WABI.2020.0},
timestamp = {Wed, 26 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/X20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/YuLCMW20,
author = {Xilin Yu and
Thien Le and
Sarah A. Christensen and
Erin K. Molloy and
Tandy J. Warnow},
editor = {Carl Kingsford and
Nadia Pisanti},
title = {Advancing Divide-And-Conquer Phylogeny Estimation Using Robinson-Foulds
Supertrees},
booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI}
2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)},
series = {LIPIcs},
volume = {172},
pages = {15:1--15:17},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2020},
url = {https://doi.org/10.4230/LIPIcs.WABI.2020.15},
doi = {10.4230/LIPICS.WABI.2020.15},
timestamp = {Thu, 16 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/YuLCMW20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ZabetiDSSLC20,
author = {Hooman Zabeti and
Nick C. Dexter and
Amir Hosein Safari and
Nafiseh Sedaghat and
Maxwell W. Libbrecht and
Leonid Chindelevitch},
editor = {Carl Kingsford and
Nadia Pisanti},
title = {An Interpretable Classification Method for Predicting Drug Resistance
in M. Tuberculosis},
booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI}
2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)},
series = {LIPIcs},
volume = {172},
pages = {2:1--2:18},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2020},
url = {https://doi.org/10.4230/LIPIcs.WABI.2020.2},
doi = {10.4230/LIPICS.WABI.2020.2},
timestamp = {Mon, 19 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ZabetiDSSLC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ZentgrafR20,
author = {Jens Zentgraf and
Sven Rahmann},
editor = {Carl Kingsford and
Nadia Pisanti},
title = {Fast Lightweight Accurate Xenograft Sorting},
booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI}
2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)},
series = {LIPIcs},
volume = {172},
pages = {4:1--4:16},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2020},
url = {https://doi.org/10.4230/LIPIcs.WABI.2020.4},
doi = {10.4230/LIPICS.WABI.2020.4},
timestamp = {Thu, 16 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ZentgrafR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ZimermanSZZ20,
author = {Galia R. Zimerman and
Dina Svetlitsky and
Meirav Zehavi and
Michal Ziv{-}Ukelson},
editor = {Carl Kingsford and
Nadia Pisanti},
title = {Approximate Search for Known Gene Clusters in New Genomes Using PQ-Trees},
booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI}
2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)},
series = {LIPIcs},
volume = {172},
pages = {1:1--1:24},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2020},
url = {https://doi.org/10.4230/LIPIcs.WABI.2020.1},
doi = {10.4230/LIPICS.WABI.2020.1},
timestamp = {Wed, 26 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ZimermanSZZ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/wabi/2020,
editor = {Carl Kingsford and
Nadia Pisanti},
title = {20th International Workshop on Algorithms in Bioinformatics, {WABI}
2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)},
series = {LIPIcs},
volume = {172},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2020},
url = {https://www.dagstuhl.de/dagpub/978-3-95977-161-0},
isbn = {978-3-95977-161-0},
timestamp = {Wed, 21 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/2020.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/AlankoBCPS19,
author = {Jarno Alanko and
Hideo Bannai and
Bastien Cazaux and
Pierre Peterlongo and
Jens Stoye},
editor = {Katharina T. Huber and
Dan Gusfield},
title = {Finding All Maximal Perfect Haplotype Blocks in Linear Time},
booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI}
2019, September 8-10, 2019, Niagara Falls, NY, {USA}},
series = {LIPIcs},
volume = {143},
pages = {8:1--8:9},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2019},
url = {https://doi.org/10.4230/LIPIcs.WABI.2019.8},
doi = {10.4230/LIPICS.WABI.2019.8},
timestamp = {Wed, 21 Aug 2024 22:46:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/AlankoBCPS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/CaoZN19,
author = {Zhen Cao and
Jiafan Zhu and
Luay Nakhleh},
editor = {Katharina T. Huber and
Dan Gusfield},
title = {Empirical Performance of Tree-Based Inference of Phylogenetic Networks},
booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI}
2019, September 8-10, 2019, Niagara Falls, NY, {USA}},
series = {LIPIcs},
volume = {143},
pages = {21:1--21:13},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2019},
url = {https://doi.org/10.4230/LIPIcs.WABI.2019.21},
doi = {10.4230/LIPICS.WABI.2019.21},
timestamp = {Mon, 23 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/CaoZN19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/CauerYVVN19,
author = {Alexandra Gesine Cauer and
G{\"{u}}rkan Yardimci and
Jean{-}Philippe Vert and
Nelle Varoquaux and
William Stafford Noble},
editor = {Katharina T. Huber and
Dan Gusfield},
title = {Inferring Diploid 3D Chromatin Structures from Hi-C Data},
booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI}
2019, September 8-10, 2019, Niagara Falls, NY, {USA}},
series = {LIPIcs},
volume = {143},
pages = {11:1--11:13},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2019},
url = {https://doi.org/10.4230/LIPIcs.WABI.2019.11},
doi = {10.4230/LIPICS.WABI.2019.11},
timestamp = {Mon, 23 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/CauerYVVN19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ChristensenMVW19,
author = {Sarah A. Christensen and
Erin K. Molloy and
Pranjal Vachaspati and
Tandy J. Warnow},
editor = {Katharina T. Huber and
Dan Gusfield},
title = {{TRACTION:} Fast Non-Parametric Improvement of Estimated Gene Trees},
booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI}
2019, September 8-10, 2019, Niagara Falls, NY, {USA}},
series = {LIPIcs},
volume = {143},
pages = {4:1--4:16},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2019},
url = {https://doi.org/10.4230/LIPIcs.WABI.2019.4},
doi = {10.4230/LIPICS.WABI.2019.4},
timestamp = {Mon, 12 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ChristensenMVW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Clement19,
author = {Nathan L. Clement},
editor = {Katharina T. Huber and
Dan Gusfield},
title = {Quantified Uncertainty of Flexible Protein-Protein Docking Algorithms},
booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI}
2019, September 8-10, 2019, Niagara Falls, NY, {USA}},
series = {LIPIcs},
volume = {143},
pages = {3:1--3:12},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2019},
url = {https://doi.org/10.4230/LIPIcs.WABI.2019.3},
doi = {10.4230/LIPICS.WABI.2019.3},
timestamp = {Tue, 03 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Clement19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/EdrisiZN19,
author = {Mohammad Amin Edrisi and
Hamim Zafar and
Luay Nakhleh},
editor = {Katharina T. Huber and
Dan Gusfield},
title = {A Combinatorial Approach for Single-cell Variant Detection via Phylogenetic
Inference},
booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI}
2019, September 8-10, 2019, Niagara Falls, NY, {USA}},
series = {LIPIcs},
volume = {143},
pages = {22:1--22:13},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2019},
url = {https://doi.org/10.4230/LIPIcs.WABI.2019.22},
doi = {10.4230/LIPICS.WABI.2019.22},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/EdrisiZN19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/GeorgievDC19,
author = {Georgi D. Georgiev and
Kevin F. Dodd and
Brian Y. Chen},
editor = {Katharina T. Huber and
Dan Gusfield},
title = {pClay: {A} Precise Parallel Algorithm for Comparing Molecular Surfaces},
booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI}
2019, September 8-10, 2019, Niagara Falls, NY, {USA}},
series = {LIPIcs},
volume = {143},
pages = {6:1--6:13},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2019},
url = {https://doi.org/10.4230/LIPIcs.WABI.2019.6},
doi = {10.4230/LIPICS.WABI.2019.6},
timestamp = {Tue, 03 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/GeorgievDC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/JainZDA19,
author = {Chirag Jain and
Haowen Zhang and
Alexander T. Dilthey and
Srinivas Aluru},
editor = {Katharina T. Huber and
Dan Gusfield},
title = {Validating Paired-End Read Alignments in Sequence Graphs},
booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI}
2019, September 8-10, 2019, Niagara Falls, NY, {USA}},
series = {LIPIcs},
volume = {143},
pages = {17:1--17:13},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2019},
url = {https://doi.org/10.4230/LIPIcs.WABI.2019.17},
doi = {10.4230/LIPICS.WABI.2019.17},
timestamp = {Mon, 09 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/JainZDA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/JanssonMP19,
author = {Jesper Jansson and
Konstantinos Mampentzidis and
Sandhya T. P.},
editor = {Katharina T. Huber and
Dan Gusfield},
title = {Building a Small and Informative Phylogenetic Supertree},
booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI}
2019, September 8-10, 2019, Niagara Falls, NY, {USA}},
series = {LIPIcs},
volume = {143},
pages = {1:1--1:14},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2019},
url = {https://doi.org/10.4230/LIPIcs.WABI.2019.1},
doi = {10.4230/LIPICS.WABI.2019.1},
timestamp = {Wed, 24 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/JanssonMP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/KavyaSS19,
author = {Naga Sai Kavya Vaddadi and
Rajgopal Srinivasan and
Naveen Sivadasan},
editor = {Katharina T. Huber and
Dan Gusfield},
title = {Read Mapping on Genome Variation Graphs},
booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI}
2019, September 8-10, 2019, Niagara Falls, NY, {USA}},
series = {LIPIcs},
volume = {143},
pages = {7:1--7:17},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2019},
url = {https://doi.org/10.4230/LIPIcs.WABI.2019.7},
doi = {10.4230/LIPICS.WABI.2019.7},
timestamp = {Wed, 18 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/KavyaSS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/LiuHSVN19,
author = {Jie Liu and
Yuanhao Huang and
Ritambhara Singh and
Jean{-}Philippe Vert and
William Stafford Noble},
editor = {Katharina T. Huber and
Dan Gusfield},
title = {Jointly Embedding Multiple Single-Cell Omics Measurements},
booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI}
2019, September 8-10, 2019, Niagara Falls, NY, {USA}},
series = {LIPIcs},
volume = {143},
pages = {10:1--10:13},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2019},
url = {https://doi.org/10.4230/LIPIcs.WABI.2019.10},
doi = {10.4230/LIPICS.WABI.2019.10},
timestamp = {Mon, 23 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/LiuHSVN19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MarkinE19,
author = {Alexey Markin and
Oliver Eulenstein},
editor = {Katharina T. Huber and
Dan Gusfield},
title = {Consensus Clusters in Robinson-Foulds Reticulation Networks},
booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI}
2019, September 8-10, 2019, Niagara Falls, NY, {USA}},
series = {LIPIcs},
volume = {143},
pages = {12:1--12:12},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2019},
url = {https://doi.org/10.4230/LIPIcs.WABI.2019.12},
doi = {10.4230/LIPICS.WABI.2019.12},
timestamp = {Mon, 23 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/MarkinE19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MiladiRWB19,
author = {Milad Miladi and
Martin Raden and
Sebastian Will and
Rolf Backofen},
editor = {Katharina T. Huber and
Dan Gusfield},
title = {Fast and Accurate Structure Probability Estimation for Simultaneous
Alignment and Folding of RNAs},
booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI}
2019, September 8-10, 2019, Niagara Falls, NY, {USA}},
series = {LIPIcs},
volume = {143},
pages = {14:1--14:13},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2019},
url = {https://doi.org/10.4230/LIPIcs.WABI.2019.14},
doi = {10.4230/LIPICS.WABI.2019.14},
timestamp = {Mon, 23 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/MiladiRWB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/PolevikovK19,
author = {Evgeny Polevikov and
Mikhail Kolmogorov},
editor = {Katharina T. Huber and
Dan Gusfield},
title = {Synteny Paths for Assembly Graphs Comparison},
booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI}
2019, September 8-10, 2019, Niagara Falls, NY, {USA}},
series = {LIPIcs},
volume = {143},
pages = {24:1--24:14},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2019},
url = {https://doi.org/10.4230/LIPIcs.WABI.2019.24},
doi = {10.4230/LIPICS.WABI.2019.24},
timestamp = {Mon, 23 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/PolevikovK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/QiuMXK19,
author = {Yutong Qiu and
Cong Ma and
Han Xie and
Carl Kingsford},
editor = {Katharina T. Huber and
Dan Gusfield},
title = {Detecting Transcriptomic Structural Variants in Heterogeneous Contexts
via the Multiple Compatible Arrangements Problem},
booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI}
2019, September 8-10, 2019, Niagara Falls, NY, {USA}},
series = {LIPIcs},
volume = {143},
pages = {18:1--18:19},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2019},
url = {https://doi.org/10.4230/LIPIcs.WABI.2019.18},
doi = {10.4230/LIPICS.WABI.2019.18},
timestamp = {Tue, 03 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/QiuMXK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SauerwaldSK19,
author = {Natalie Sauerwald and
Yihang Shen and
Carl Kingsford},
editor = {Katharina T. Huber and
Dan Gusfield},
title = {Topological Data Analysis Reveals Principles of Chromosome Structure
in Cellular Differentiation},
booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI}
2019, September 8-10, 2019, Niagara Falls, NY, {USA}},
series = {LIPIcs},
volume = {143},
pages = {23:1--23:16},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2019},
url = {https://doi.org/10.4230/LIPIcs.WABI.2019.23},
doi = {10.4230/LIPICS.WABI.2019.23},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SauerwaldSK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SimonaitisCS19,
author = {Pijus Simonaitis and
Annie Chateau and
Krister M. Swenson},
editor = {Katharina T. Huber and
Dan Gusfield},
title = {Weighted Minimum-Length Rearrangement Scenarios},
booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI}
2019, September 8-10, 2019, Niagara Falls, NY, {USA}},
series = {LIPIcs},
volume = {143},
pages = {13:1--13:17},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2019},
url = {https://doi.org/10.4230/LIPIcs.WABI.2019.13},
doi = {10.4230/LIPICS.WABI.2019.13},
timestamp = {Mon, 23 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SimonaitisCS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Tiskin19,
author = {Alexander Tiskin},
editor = {Katharina T. Huber and
Dan Gusfield},
title = {Bounded-Length Smith-Waterman Alignment},
booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI}
2019, September 8-10, 2019, Niagara Falls, NY, {USA}},
series = {LIPIcs},
volume = {143},
pages = {16:1--16:12},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2019},
url = {https://doi.org/10.4230/LIPIcs.WABI.2019.16},
doi = {10.4230/LIPICS.WABI.2019.16},
timestamp = {Mon, 23 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Tiskin19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/TruszkowskiGS19,
author = {Jakub Truszkowski and
Olivier Gascuel and
Krister M. Swenson},
editor = {Katharina T. Huber and
Dan Gusfield},
title = {Rapidly Computing the Phylogenetic Transfer Index},
booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI}
2019, September 8-10, 2019, Niagara Falls, NY, {USA}},
series = {LIPIcs},
volume = {143},
pages = {20:1--20:12},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2019},
url = {https://doi.org/10.4230/LIPIcs.WABI.2019.20},
doi = {10.4230/LIPICS.WABI.2019.20},
timestamp = {Mon, 23 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/TruszkowskiGS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/WangELT19,
author = {Qi Wang and
Ryan A. Leo Elworth and
Tian{-}Rui Liu and
Todd J. Treangen},
editor = {Katharina T. Huber and
Dan Gusfield},
title = {Faster Pan-Genome Construction for Efficient Differentiation of Naturally
Occurring and Engineered Plasmids with Plaster},
booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI}
2019, September 8-10, 2019, Niagara Falls, NY, {USA}},
series = {LIPIcs},
volume = {143},
pages = {19:1--19:12},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2019},
url = {https://doi.org/10.4230/LIPIcs.WABI.2019.19},
doi = {10.4230/LIPICS.WABI.2019.19},
timestamp = {Sat, 13 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/WangELT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Wittler19,
author = {Roland Wittler},
editor = {Katharina T. Huber and
Dan Gusfield},
title = {Alignment- and Reference-Free Phylogenomics with Colored de Bruijn
Graphs},
booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI}
2019, September 8-10, 2019, Niagara Falls, NY, {USA}},
series = {LIPIcs},
volume = {143},
pages = {2:1--2:14},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2019},
url = {https://doi.org/10.4230/LIPIcs.WABI.2019.2},
doi = {10.4230/LIPICS.WABI.2019.2},
timestamp = {Mon, 23 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Wittler19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/X19,
editor = {Katharina T. Huber and
Dan Gusfield},
title = {Front Matter, Table of Contents, Preface, Conference Organization},
booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI}
2019, September 8-10, 2019, Niagara Falls, NY, {USA}},
series = {LIPIcs},
volume = {143},
pages = {0:1--0:12},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2019},
url = {https://doi.org/10.4230/LIPIcs.WABI.2019.0},
doi = {10.4230/LIPICS.WABI.2019.0},
timestamp = {Tue, 03 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/X19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/XinSK19,
author = {Hongyi Xin and
Mingfu Shao and
Carl Kingsford},
editor = {Katharina T. Huber and
Dan Gusfield},
title = {Context-Aware Seeds for Read Mapping},
booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI}
2019, September 8-10, 2019, Niagara Falls, NY, {USA}},
series = {LIPIcs},
volume = {143},
pages = {15:1--15:13},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2019},
url = {https://doi.org/10.4230/LIPIcs.WABI.2019.15},
doi = {10.4230/LIPICS.WABI.2019.15},
timestamp = {Tue, 03 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/XinSK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/YamadaCW19,
author = {Kohei Yamada and
Zhi{-}Zhong Chen and
Lusheng Wang},
editor = {Katharina T. Huber and
Dan Gusfield},
title = {Better Practical Algorithms for rSPR Distance and Hybridization Number},
booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI}
2019, September 8-10, 2019, Niagara Falls, NY, {USA}},
series = {LIPIcs},
volume = {143},
pages = {5:1--5:12},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2019},
url = {https://doi.org/10.4230/LIPIcs.WABI.2019.5},
doi = {10.4230/LIPICS.WABI.2019.5},
timestamp = {Mon, 10 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/YamadaCW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ZollerZZ19,
author = {Roni Zoller and
Meirav Zehavi and
Michal Ziv{-}Ukelson},
editor = {Katharina T. Huber and
Dan Gusfield},
title = {A New Paradigm for Identifying Reconciliation-Scenario Altering Mutations
Conferring Environmental Adaptation},
booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI}
2019, September 8-10, 2019, Niagara Falls, NY, {USA}},
series = {LIPIcs},
volume = {143},
pages = {9:1--9:13},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2019},
url = {https://doi.org/10.4230/LIPIcs.WABI.2019.9},
doi = {10.4230/LIPICS.WABI.2019.9},
timestamp = {Tue, 03 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ZollerZZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/wabi/2019,
editor = {Katharina T. Huber and
Dan Gusfield},
title = {19th International Workshop on Algorithms in Bioinformatics, {WABI}
2019, September 8-10, 2019, Niagara Falls, NY, {USA}},
series = {LIPIcs},
volume = {143},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2019},
url = {http://www.dagstuhl.de/dagpub/978-3-95977-123-8},
isbn = {978-3-95977-123-8},
timestamp = {Wed, 21 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/2019.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/AlzamelA0GIPPR18,
author = {Mai Alzamel and
Lorraine A. K. Ayad and
Giulia Bernardini and
Roberto Grossi and
Costas S. Iliopoulos and
Nadia Pisanti and
Solon P. Pissis and
Giovanna Rosone},
editor = {Laxmi Parida and
Esko Ukkonen},
title = {Degenerate String Comparison and Applications},
booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI}
2018, August 20-22, 2018, Helsinki, Finland},
series = {LIPIcs},
volume = {113},
pages = {21:1--21:14},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2018},
url = {https://doi.org/10.4230/LIPIcs.WABI.2018.21},
doi = {10.4230/LIPICS.WABI.2018.21},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/AlzamelA0GIPPR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BasuUP18,
author = {Saugata Basu and
Filippo Utro and
Laxmi Parida},
editor = {Laxmi Parida and
Esko Ukkonen},
title = {Essential Simplices in Persistent Homology and Subtle Admixture Detection},
booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI}
2018, August 20-22, 2018, Helsinki, Finland},
series = {LIPIcs},
volume = {113},
pages = {14:1--14:10},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2018},
url = {https://doi.org/10.4230/LIPIcs.WABI.2018.14},
doi = {10.4230/LIPICS.WABI.2018.14},
timestamp = {Mon, 16 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BasuUP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BoucherGKM18,
author = {Christina Boucher and
Travis Gagie and
Alan Kuhnle and
Giovanni Manzini},
editor = {Laxmi Parida and
Esko Ukkonen},
title = {Prefix-Free Parsing for Building Big BWTs},
booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI}
2018, August 20-22, 2018, Helsinki, Finland},
series = {LIPIcs},
volume = {113},
pages = {2:1--2:16},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2018},
url = {https://doi.org/10.4230/LIPIcs.WABI.2018.2},
doi = {10.4230/LIPICS.WABI.2018.2},
timestamp = {Mon, 10 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BoucherGKM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ChretienGM18,
author = {St{\'{e}}phane Chr{\'{e}}tien and
Christophe Guyeux and
Serge Moulin},
editor = {Laxmi Parida and
Esko Ukkonen},
title = {l1-Penalised Ordinal Polytomous Regression Estimators with Application
to Gene Expression Studies},
booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI}
2018, August 20-22, 2018, Helsinki, Finland},
series = {LIPIcs},
volume = {113},
pages = {17:1--17:13},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2018},
url = {https://doi.org/10.4230/LIPIcs.WABI.2018.17},
doi = {10.4230/LIPICS.WABI.2018.17},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ChretienGM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/DeyM18,
author = {Tamal K. Dey and
Sayan Mandal},
editor = {Laxmi Parida and
Esko Ukkonen},
title = {Protein Classification with Improved Topological Data Analysis},
booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI}
2018, August 20-22, 2018, Helsinki, Finland},
series = {LIPIcs},
volume = {113},
pages = {6:1--6:13},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2018},
url = {https://doi.org/10.4230/LIPIcs.WABI.2018.6},
doi = {10.4230/LIPICS.WABI.2018.6},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/DeyM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/DondiLS18,
author = {Riccardo Dondi and
Manuel Lafond and
C{\'{e}}line Scornavacca},
editor = {Laxmi Parida and
Esko Ukkonen},
title = {Reconciling Multiple Genes Trees via Segmental Duplications and Losses},
booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI}
2018, August 20-22, 2018, Helsinki, Finland},
series = {LIPIcs},
volume = {113},
pages = {5:1--5:16},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2018},
url = {https://doi.org/10.4230/LIPIcs.WABI.2018.5},
doi = {10.4230/LIPICS.WABI.2018.5},
timestamp = {Thu, 23 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/DondiLS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/DuhrkopLWB18,
author = {Kai D{\"{u}}hrkop and
Marie Anne Lataretu and
W. Timothy J. White and
Sebastian B{\"{o}}cker},
editor = {Laxmi Parida and
Esko Ukkonen},
title = {Heuristic Algorithms for the Maximum Colorful Subtree Problem},
booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI}
2018, August 20-22, 2018, Helsinki, Finland},
series = {LIPIcs},
volume = {113},
pages = {23:1--23:14},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2018},
url = {https://doi.org/10.4230/LIPIcs.WABI.2018.23},
doi = {10.4230/LIPICS.WABI.2018.23},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/DuhrkopLWB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/EgidiLMT18,
author = {Lavinia Egidi and
Felipe A. Louza and
Giovanni Manzini and
Guilherme P. Telles},
editor = {Laxmi Parida and
Esko Ukkonen},
title = {External memory {BWT} and {LCP} computation for sequence collections
with applications},
booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI}
2018, August 20-22, 2018, Helsinki, Finland},
series = {LIPIcs},
volume = {113},
pages = {10:1--10:14},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2018},
url = {https://doi.org/10.4230/LIPIcs.WABI.2018.10},
doi = {10.4230/LIPICS.WABI.2018.10},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/EgidiLMT18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/El-Kebir18,
author = {Mohammed El{-}Kebir},
editor = {Laxmi Parida and
Esko Ukkonen},
title = {Parsimonious Migration History Problem: Complexity and Algorithms},
booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI}
2018, August 20-22, 2018, Helsinki, Finland},
series = {LIPIcs},
volume = {113},
pages = {24:1--24:14},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2018},
url = {https://doi.org/10.4230/LIPIcs.WABI.2018.24},
doi = {10.4230/LIPICS.WABI.2018.24},
timestamp = {Wed, 25 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/El-Kebir18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ElworthABDN18,
author = {Ryan A. Leo Elworth and
Chabrielle Allen and
Travis Benedict and
Peter Dulworth and
Luay Nakhleh},
editor = {Laxmi Parida and
Esko Ukkonen},
title = {{DGEN:} {A} Test Statistic for Detection of General Introgression
Scenarios},
booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI}
2018, August 20-22, 2018, Helsinki, Finland},
series = {LIPIcs},
volume = {113},
pages = {19:1--19:13},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2018},
url = {https://doi.org/10.4230/LIPIcs.WABI.2018.19},
doi = {10.4230/LIPICS.WABI.2018.19},
timestamp = {Thu, 23 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ElworthABDN18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/EnglerCVGMK18,
author = {Martin S. Engler and
Bertrand Caron and
Lourens E. Veen and
Daan P. Geerke and
Alan E. Mark and
Gunnar W. Klau},
editor = {Laxmi Parida and
Esko Ukkonen},
title = {Multiple-Choice Knapsack for Assigning Partial Atomic Charges in Drug-Like
Molecules},
booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI}
2018, August 20-22, 2018, Helsinki, Finland},
series = {LIPIcs},
volume = {113},
pages = {16:1--16:13},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2018},
url = {https://doi.org/10.4230/LIPIcs.WABI.2018.16},
doi = {10.4230/LIPICS.WABI.2018.16},
timestamp = {Sun, 24 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/EnglerCVGMK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/HajkarimUV18,
author = {Morteza Chalabi Hajkarim and
Eli Upfal and
Fabio Vandin},
editor = {Laxmi Parida and
Esko Ukkonen},
title = {Differentially Mutated Subnetworks Discovery},
booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI}
2018, August 20-22, 2018, Helsinki, Finland},
series = {LIPIcs},
volume = {113},
pages = {18:1--18:14},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2018},
url = {https://doi.org/10.4230/LIPIcs.WABI.2018.18},
doi = {10.4230/LIPICS.WABI.2018.18},
timestamp = {Mon, 16 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/HajkarimUV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/HartmannR18,
author = {Till Hartmann and
Sven Rahmann},
editor = {Laxmi Parida and
Esko Ukkonen},
title = {Spalter: {A} Meta Machine Learning Approach to Distinguish True {DNA}
Variants from Sequencing Artefacts},
booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI}
2018, August 20-22, 2018, Helsinki, Finland},
series = {LIPIcs},
volume = {113},
pages = {13:1--13:8},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2018},
url = {https://doi.org/10.4230/LIPIcs.WABI.2018.13},
doi = {10.4230/LIPICS.WABI.2018.13},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/HartmannR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/KarpovMRS18,
author = {Nikolai Karpov and
Salem Malikic and
Md. Khaledur Rahman and
S{\"{u}}leyman Cenk Sahinalp},
editor = {Laxmi Parida and
Esko Ukkonen},
title = {A Multi-labeled Tree Edit Distance for Comparing "Clonal Trees" of
Tumor Progression},
booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI}
2018, August 20-22, 2018, Helsinki, Finland},
series = {LIPIcs},
volume = {113},
pages = {22:1--22:19},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2018},
url = {https://doi.org/10.4230/LIPIcs.WABI.2018.22},
doi = {10.4230/LIPICS.WABI.2018.22},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/KarpovMRS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MajewskiCSNMG18,
author = {Szymon Majewski and
Michal Aleksander Ciach and
Michal Startek and
Wanda Niemyska and
Blazej Miasojedow and
Anna Gambin},
editor = {Laxmi Parida and
Esko Ukkonen},
title = {The Wasserstein Distance as a Dissimilarity Measure for Mass Spectra
with Application to Spectral Deconvolution},
booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI}
2018, August 20-22, 2018, Helsinki, Finland},
series = {LIPIcs},
volume = {113},
pages = {25:1--25:21},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2018},
url = {https://doi.org/10.4230/LIPIcs.WABI.2018.25},
doi = {10.4230/LIPICS.WABI.2018.25},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/MajewskiCSNMG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MansouriBVCC18,
author = {Mehrdad Mansouri and
Julian Booth and
Margaryta Vityaz and
C{\'{e}}dric Chauve and
Leonid Chindelevitch},
editor = {Laxmi Parida and
Esko Ukkonen},
title = {{PRINCE:} Accurate Approximation of the Copy Number of Tandem Repeats},
booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI}
2018, August 20-22, 2018, Helsinki, Finland},
series = {LIPIcs},
volume = {113},
pages = {20:1--20:13},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2018},
url = {https://doi.org/10.4230/LIPIcs.WABI.2018.20},
doi = {10.4230/LIPICS.WABI.2018.20},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/MansouriBVCC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MuggliPB18,
author = {Martin D. Muggli and
Simon J. Puglisi and
Christina Boucher},
editor = {Laxmi Parida and
Esko Ukkonen},
title = {A Succinct Solution to Rmap Alignment},
booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI}
2018, August 20-22, 2018, Helsinki, Finland},
series = {LIPIcs},
volume = {113},
pages = {12:1--12:16},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2018},
url = {https://doi.org/10.4230/LIPIcs.WABI.2018.12},
doi = {10.4230/LIPICS.WABI.2018.12},
timestamp = {Mon, 10 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/MuggliPB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/NorriCKM18,
author = {Tuukka Norri and
Bastien Cazaux and
Dmitry Kosolobov and
Veli M{\"{a}}kinen},
editor = {Laxmi Parida and
Esko Ukkonen},
title = {Minimum Segmentation for Pan-genomic Founder Reconstruction in Linear
Time},
booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI}
2018, August 20-22, 2018, Helsinki, Finland},
series = {LIPIcs},
volume = {113},
pages = {15:1--15:15},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2018},
url = {https://doi.org/10.4230/LIPIcs.WABI.2018.15},
doi = {10.4230/LIPICS.WABI.2018.15},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/NorriCKM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/PrezzaPSR18,
author = {Nicola Prezza and
Nadia Pisanti and
Marinella Sciortino and
Giovanna Rosone},
editor = {Laxmi Parida and
Esko Ukkonen},
title = {Detecting Mutations by eBWT},
booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI}
2018, August 20-22, 2018, Helsinki, Finland},
series = {LIPIcs},
volume = {113},
pages = {3:1--3:15},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2018},
url = {https://doi.org/10.4230/LIPIcs.WABI.2018.3},
doi = {10.4230/LIPICS.WABI.2018.3},
timestamp = {Thu, 23 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/PrezzaPSR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/RosenP18,
author = {Yohei M. Rosen and
Benedict J. Paten},
editor = {Laxmi Parida and
Esko Ukkonen},
title = {An Average-Case Sublinear Exact Li and Stephens Forward Algorithm},
booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI}
2018, August 20-22, 2018, Helsinki, Finland},
series = {LIPIcs},
volume = {113},
pages = {9:1--9:13},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2018},
url = {https://doi.org/10.4230/LIPIcs.WABI.2018.9},
doi = {10.4230/LIPICS.WABI.2018.9},
timestamp = {Thu, 23 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/RosenP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SirenGNPD18,
author = {Jouni Sir{\'{e}}n and
Erik Garrison and
Adam M. Novak and
Benedict Paten and
Richard Durbin},
editor = {Laxmi Parida and
Esko Ukkonen},
title = {Haplotype-aware graph indexes},
booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI}
2018, August 20-22, 2018, Helsinki, Finland},
series = {LIPIcs},
volume = {113},
pages = {4:1--4:13},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2018},
url = {https://doi.org/10.4230/LIPIcs.WABI.2018.4},
doi = {10.4230/LIPICS.WABI.2018.4},
timestamp = {Wed, 25 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SirenGNPD18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SternbergS18,
author = {Barak Sternberg and
Roded Sharan},
editor = {Laxmi Parida and
Esko Ukkonen},
title = {A Dynamic Algorithm for Network Propagation},
booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI}
2018, August 20-22, 2018, Helsinki, Finland},
series = {LIPIcs},
volume = {113},
pages = {7:1--7:13},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2018},
url = {https://doi.org/10.4230/LIPIcs.WABI.2018.7},
doi = {10.4230/LIPICS.WABI.2018.7},
timestamp = {Thu, 23 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SternbergS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/WalveRS18,
author = {Riku Walve and
Pasi Rastas and
Leena Salmela},
editor = {Laxmi Parida and
Esko Ukkonen},
title = {Kermit: Guided Long Read Assembly using Coloured Overlap Graphs},
booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI}
2018, August 20-22, 2018, Helsinki, Finland},
series = {LIPIcs},
volume = {113},
pages = {11:1--11:11},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2018},
url = {https://doi.org/10.4230/LIPIcs.WABI.2018.11},
doi = {10.4230/LIPICS.WABI.2018.11},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/WalveRS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/X18,
editor = {Laxmi Parida and
Esko Ukkonen},
title = {Front Matter, Table of Contents, Preface, Conference Organization},
booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI}
2018, August 20-22, 2018, Helsinki, Finland},
series = {LIPIcs},
volume = {113},
pages = {0:i--0:xvi},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2018},
url = {https://doi.org/10.4230/LIPIcs.WABI.2018.0},
doi = {10.4230/LIPICS.WABI.2018.0},
timestamp = {Thu, 23 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/X18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ZabetiSBC18,
author = {Hooman Zabeti and
Tamon Stephen and
Bonnie Berger and
Leonid Chindelevitch},
editor = {Laxmi Parida and
Esko Ukkonen},
title = {A Duality-Based Method for Identifying Elemental Balance Violations
in Metabolic Network Models},
booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI}
2018, August 20-22, 2018, Helsinki, Finland},
series = {LIPIcs},
volume = {113},
pages = {1:1--1:13},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2018},
url = {https://doi.org/10.4230/LIPIcs.WABI.2018.1},
doi = {10.4230/LIPICS.WABI.2018.1},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/ZabetiSBC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ZhangRW18,
author = {Qiuyi (Richard) Zhang and
Satish Rao and
Tandy J. Warnow},
editor = {Laxmi Parida and
Esko Ukkonen},
title = {New Absolute Fast Converging Phylogeny Estimation Methods with Improved
Scalability and Accuracy},
booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI}
2018, August 20-22, 2018, Helsinki, Finland},
series = {LIPIcs},
volume = {113},
pages = {8:1--8:12},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2018},
url = {https://doi.org/10.4230/LIPIcs.WABI.2018.8},
doi = {10.4230/LIPICS.WABI.2018.8},
timestamp = {Thu, 23 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ZhangRW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/wabi/2018,
editor = {Laxmi Parida and
Esko Ukkonen},
title = {18th International Workshop on Algorithms in Bioinformatics, {WABI}
2018, August 20-22, 2018, Helsinki, Finland},
series = {LIPIcs},
volume = {113},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2018},
url = {http://www.dagstuhl.de/dagpub/978-3-95977-082-8},
isbn = {978-3-95977-082-8},
timestamp = {Tue, 11 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/2018.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/AbramovaK17,
author = {Anastasiia Abramova and
Anton I. Korobeynikov},
editor = {Russell Schwartz and
Knut Reinert},
title = {Assessing the Significance of Peptide Spectrum Match Scores},
booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI}
2017, August 21-23, 2017, Boston, MA, {USA}},
series = {LIPIcs},
volume = {88},
pages = {14:1--14:11},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2017},
url = {https://doi.org/10.4230/LIPIcs.WABI.2017.14},
doi = {10.4230/LIPICS.WABI.2017.14},
timestamp = {Wed, 04 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/AbramovaK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/AlipanahiSPMB17,
author = {Bahar Alipanahi and
Leena Salmela and
Simon J. Puglisi and
Martin D. Muggli and
Christina Boucher},
editor = {Russell Schwartz and
Knut Reinert},
title = {Disentangled Long-Read De Bruijn Graphs via Optical Maps},
booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI}
2017, August 21-23, 2017, Boston, MA, {USA}},
series = {LIPIcs},
volume = {88},
pages = {1:1--1:14},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2017},
url = {https://doi.org/10.4230/LIPIcs.WABI.2017.1},
doi = {10.4230/LIPICS.WABI.2017.1},
timestamp = {Mon, 10 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/AlipanahiSPMB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/AlmirantisCGIMP17,
author = {Yannis Almirantis and
Panagiotis Charalampopoulos and
Jia Gao and
Costas S. Iliopoulos and
Manal Mohamed and
Solon P. Pissis and
Dimitris Polychronopoulos},
editor = {Russell Schwartz and
Knut Reinert},
title = {Optimal Computation of Overabundant Words},
booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI}
2017, August 21-23, 2017, Boston, MA, {USA}},
series = {LIPIcs},
volume = {88},
pages = {4:1--4:14},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2017},
url = {https://doi.org/10.4230/LIPIcs.WABI.2017.4},
doi = {10.4230/LIPICS.WABI.2017.4},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/AlmirantisCGIMP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/AlmodaresiPP17,
author = {Fatemeh Almodaresi and
Prashant Pandey and
Rob Patro},
editor = {Russell Schwartz and
Knut Reinert},
title = {Rainbowfish: {A} Succinct Colored de Bruijn Graph Representation},
booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI}
2017, August 21-23, 2017, Boston, MA, {USA}},
series = {LIPIcs},
volume = {88},
pages = {18:1--18:15},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2017},
url = {https://doi.org/10.4230/LIPIcs.WABI.2017.18},
doi = {10.4230/LIPICS.WABI.2017.18},
timestamp = {Mon, 22 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/AlmodaresiPP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ArdakanyL17,
author = {Abbas Roayaei Ardakany and
Stefano Lonardi},
editor = {Russell Schwartz and
Knut Reinert},
title = {Efficient and Accurate Detection of Topologically Associating Domains
from Contact Maps},
booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI}
2017, August 21-23, 2017, Boston, MA, {USA}},
series = {LIPIcs},
volume = {88},
pages = {22:1--22:11},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2017},
url = {https://doi.org/10.4230/LIPIcs.WABI.2017.22},
doi = {10.4230/LIPICS.WABI.2017.22},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ArdakanyL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BayeganC17,
author = {Amir H. Bayegan and
Peter Clote},
editor = {Russell Schwartz and
Knut Reinert},
title = {An {IP} Algorithm for {RNA} Folding Trajectories},
booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI}
2017, August 21-23, 2017, Boston, MA, {USA}},
series = {LIPIcs},
volume = {88},
pages = {6:1--6:16},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2017},
url = {https://doi.org/10.4230/LIPIcs.WABI.2017.6},
doi = {10.4230/LIPICS.WABI.2017.6},
timestamp = {Thu, 23 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BayeganC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BayzidW17,
author = {Md. Shamsuzzoha Bayzid and
Tandy J. Warnow},
editor = {Russell Schwartz and
Knut Reinert},
title = {Gene Tree Parsimony for Incomplete Gene Trees},
booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI}
2017, August 21-23, 2017, Boston, MA, {USA}},
series = {LIPIcs},
volume = {88},
pages = {2:1--2:13},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2017},
url = {https://doi.org/10.4230/LIPIcs.WABI.2017.2},
doi = {10.4230/LIPICS.WABI.2017.2},
timestamp = {Thu, 23 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BayzidW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BrubachGPS17,
author = {Brian Brubach and
Jay Ghurye and
Mihai Pop and
Aravind Srinivasan},
editor = {Russell Schwartz and
Knut Reinert},
title = {Better Greedy Sequence Clustering with Fast Banded Alignment},
booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI}
2017, August 21-23, 2017, Boston, MA, {USA}},
series = {LIPIcs},
volume = {88},
pages = {3:1--3:13},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2017},
url = {https://doi.org/10.4230/LIPIcs.WABI.2017.3},
doi = {10.4230/LIPICS.WABI.2017.3},
timestamp = {Thu, 23 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BrubachGPS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ChristensenMVW17,
author = {Sarah A. Christensen and
Erin K. Molloy and
Pranjal Vachaspati and
Tandy J. Warnow},
editor = {Russell Schwartz and
Knut Reinert},
title = {Optimal Completion of Incomplete Gene Trees in Polynomial Time Using
{OCTAL}},
booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI}
2017, August 21-23, 2017, Boston, MA, {USA}},
series = {LIPIcs},
volume = {88},
pages = {27:1--27:14},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2017},
url = {https://doi.org/10.4230/LIPIcs.WABI.2017.27},
doi = {10.4230/LIPICS.WABI.2017.27},
timestamp = {Mon, 12 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ChristensenMVW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/CiachMG17,
author = {Michal Aleksander Ciach and
Anna Muszewska and
Pawel G{\'{o}}recki},
editor = {Russell Schwartz and
Knut Reinert},
title = {Detecting Locus Acquisition Events in Gene Trees},
booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI}
2017, August 21-23, 2017, Boston, MA, {USA}},
series = {LIPIcs},
volume = {88},
pages = {5:1--5:13},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2017},
url = {https://doi.org/10.4230/LIPIcs.WABI.2017.5},
doi = {10.4230/LIPICS.WABI.2017.5},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/CiachMG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/CrochemoreFPV17,
author = {Maxime Crochemore and
Alexandre P. Francisco and
Solon P. Pissis and
C{\'{a}}tia Vaz},
editor = {Russell Schwartz and
Knut Reinert},
title = {Towards Distance-Based Phylogenetic Inference in Average-Case Linear-Time},
booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI}
2017, August 21-23, 2017, Boston, MA, {USA}},
series = {LIPIcs},
volume = {88},
pages = {9:1--9:14},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2017},
url = {https://doi.org/10.4230/LIPIcs.WABI.2017.9},
doi = {10.4230/LIPICS.WABI.2017.9},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/CrochemoreFPV17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/El-MabroukO17,
author = {Nadia El{-}Mabrouk and
A{\"{\i}}da Ouangraoua},
editor = {Russell Schwartz and
Knut Reinert},
title = {A General Framework for Gene Tree Correction Based on Duplication-Loss
Reconciliation},
booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI}
2017, August 21-23, 2017, Boston, MA, {USA}},
series = {LIPIcs},
volume = {88},
pages = {8:1--8:14},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2017},
url = {https://doi.org/10.4230/LIPIcs.WABI.2017.8},
doi = {10.4230/LIPICS.WABI.2017.8},
timestamp = {Thu, 23 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/El-MabroukO17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/FrankHTV17,
author = {Yves Frank and
Tomas Hruz and
Thomas Tschager and
Valentin Venzin},
editor = {Russell Schwartz and
Knut Reinert},
title = {Improved De Novo Peptide Sequencing using {LC} Retention Time Information},
booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI}
2017, August 21-23, 2017, Boston, MA, {USA}},
series = {LIPIcs},
volume = {88},
pages = {26:1--26:17},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2017},
url = {https://doi.org/10.4230/LIPIcs.WABI.2017.26},
doi = {10.4230/LIPICS.WABI.2017.26},
timestamp = {Thu, 23 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/FrankHTV17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/GirottoCP17,
author = {Samuele Girotto and
Matteo Comin and
Cinzia Pizzi},
editor = {Russell Schwartz and
Knut Reinert},
title = {Fast Spaced Seed Hashing},
booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI}
2017, August 21-23, 2017, Boston, MA, {USA}},
series = {LIPIcs},
volume = {88},
pages = {7:1--7:14},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2017},
url = {https://doi.org/10.4230/LIPIcs.WABI.2017.7},
doi = {10.4230/LIPICS.WABI.2017.7},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/GirottoCP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/GunadyCMB17,
author = {Mohamed K. Gunady and
Steffen Cornwell and
Stephen M. Mount and
H{\'{e}}ctor Corrada Bravo},
editor = {Russell Schwartz and
Knut Reinert},
title = {Yanagi: Transcript Segment Library Construction for RNA-Seq Quantification},
booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI}
2017, August 21-23, 2017, Boston, MA, {USA}},
series = {LIPIcs},
volume = {88},
pages = {10:1--10:14},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2017},
url = {https://doi.org/10.4230/LIPIcs.WABI.2017.10},
doi = {10.4230/LIPICS.WABI.2017.10},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/GunadyCMB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/HuLQ17,
author = {Chenyue W. Hu and
Hanyang Li and
Amina A. Qutub},
editor = {Russell Schwartz and
Knut Reinert},
title = {Shrinkage Clustering: {A} Fast and Size-Constrained Algorithm for
Biomedical Applications},
booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI}
2017, August 21-23, 2017, Boston, MA, {USA}},
series = {LIPIcs},
volume = {88},
pages = {11:1--11:13},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2017},
url = {https://doi.org/10.4230/LIPIcs.WABI.2017.11},
doi = {10.4230/LIPICS.WABI.2017.11},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/HuLQ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/JabbariWMW17,
author = {Hosna Jabbari and
Ian Wark and
Carlo Montemagno and
Sebastian Will},
editor = {Russell Schwartz and
Knut Reinert},
title = {Sparsification Enables Predicting Kissing Hairpin Pseudoknot Structures
of Long RNAs in Practice},
booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI}
2017, August 21-23, 2017, Boston, MA, {USA}},
series = {LIPIcs},
volume = {88},
pages = {12:1--12:13},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2017},
url = {https://doi.org/10.4230/LIPIcs.WABI.2017.12},
doi = {10.4230/LIPICS.WABI.2017.12},
timestamp = {Mon, 01 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/JabbariWMW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/KimR17,
author = {Jongkyu Kim and
Knut Reinert},
editor = {Russell Schwartz and
Knut Reinert},
title = {Vaquita: Fast and Accurate Identification of Structural Variation
Using Combined Evidence},
booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI}
2017, August 21-23, 2017, Boston, MA, {USA}},
series = {LIPIcs},
volume = {88},
pages = {13:1--13:14},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2017},
url = {https://doi.org/10.4230/LIPIcs.WABI.2017.13},
doi = {10.4230/LIPICS.WABI.2017.13},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/KimR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MaoMRTK17,
author = {Shunfu Mao and
Soheil Mohajer and
Kannan Ramchandran and
David Tse and
Sreeram Kannan},
editor = {Russell Schwartz and
Knut Reinert},
title = {abSNP: RNA-Seq {SNP} Calling in Repetitive Regions via Abundance Estimation},
booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI}
2017, August 21-23, 2017, Boston, MA, {USA}},
series = {LIPIcs},
volume = {88},
pages = {15:1--15:14},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2017},
url = {https://doi.org/10.4230/LIPIcs.WABI.2017.15},
doi = {10.4230/LIPICS.WABI.2017.15},
timestamp = {Thu, 23 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/MaoMRTK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/NikumbhEP17,
author = {Sarvesh Nikumbh and
Peter Ebert and
Nico Pfeifer},
editor = {Russell Schwartz and
Knut Reinert},
title = {All Fingers Are Not the Same: Handling Variable-Length Sequences in
a Discriminative Setting Using Conformal Multi-Instance Kernels},
booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI}
2017, August 21-23, 2017, Boston, MA, {USA}},
series = {LIPIcs},
volume = {88},
pages = {16:1--16:14},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2017},
url = {https://doi.org/10.4230/LIPIcs.WABI.2017.16},
doi = {10.4230/LIPICS.WABI.2017.16},
timestamp = {Fri, 30 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/NikumbhEP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/NojgaardGMSWH17,
author = {Nikolai N{\o}jgaard and
Manuela Gei{\ss} and
Daniel Merkle and
Peter F. Stadler and
Nicolas Wieseke and
Marc Hellmuth},
editor = {Russell Schwartz and
Knut Reinert},
title = {Forbidden Time Travel: Characterization of Time-Consistent Tree Reconciliation
Maps},
booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI}
2017, August 21-23, 2017, Boston, MA, {USA}},
series = {LIPIcs},
volume = {88},
pages = {17:1--17:12},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2017},
url = {https://doi.org/10.4230/LIPIcs.WABI.2017.17},
doi = {10.4230/LIPICS.WABI.2017.17},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/NojgaardGMSWH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/PolishkoHPBRL17,
author = {Anton Polishko and
Md. Abid Hasan and
Weihua Pan and
Evelien M. Bunnik and
Karine G. Le Roch and
Stefano Lonardi},
editor = {Russell Schwartz and
Knut Reinert},
title = {ThIEF: Finding Genome-wide Trajectories of Epigenetics Marks},
booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI}
2017, August 21-23, 2017, Boston, MA, {USA}},
series = {LIPIcs},
volume = {88},
pages = {19:1--19:16},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2017},
url = {https://doi.org/10.4230/LIPIcs.WABI.2017.19},
doi = {10.4230/LIPICS.WABI.2017.19},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/PolishkoHPBRL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ProchazkaH17,
author = {Petr Proch{\'{a}}zka and
Jan Holub},
editor = {Russell Schwartz and
Knut Reinert},
title = {Byte-Aligned Pattern Matching in Encoded Genomic Sequences},
booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI}
2017, August 21-23, 2017, Boston, MA, {USA}},
series = {LIPIcs},
volume = {88},
pages = {20:1--20:13},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2017},
url = {https://doi.org/10.4230/LIPIcs.WABI.2017.20},
doi = {10.4230/LIPICS.WABI.2017.20},
timestamp = {Wed, 25 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ProchazkaH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/QuedenfeldR17,
author = {Jens Quedenfeld and
Sven Rahmann},
editor = {Russell Schwartz and
Knut Reinert},
title = {Analysis of Min-Hashing for Variant Tolerant {DNA} Read Mapping},
booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI}
2017, August 21-23, 2017, Boston, MA, {USA}},
series = {LIPIcs},
volume = {88},
pages = {21:1--21:13},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2017},
url = {https://doi.org/10.4230/LIPIcs.WABI.2017.21},
doi = {10.4230/LIPICS.WABI.2017.21},
timestamp = {Thu, 23 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/QuedenfeldR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ShahAP17,
author = {Nidhi Shah and
Stephen F. Altschul and
Mihai Pop},
editor = {Russell Schwartz and
Knut Reinert},
title = {Outlier Detection in {BLAST} Hits},
booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI}
2017, August 21-23, 2017, Boston, MA, {USA}},
series = {LIPIcs},
volume = {88},
pages = {23:1--23:11},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2017},
url = {https://doi.org/10.4230/LIPIcs.WABI.2017.23},
doi = {10.4230/LIPICS.WABI.2017.23},
timestamp = {Thu, 23 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ShahAP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SimonaitisS17,
author = {Pijus Simonaitis and
Krister M. Swenson},
editor = {Russell Schwartz and
Knut Reinert},
title = {Finding Local Genome Rearrangements},
booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI}
2017, August 21-23, 2017, Boston, MA, {USA}},
series = {LIPIcs},
volume = {88},
pages = {24:1--24:13},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2017},
url = {https://doi.org/10.4230/LIPIcs.WABI.2017.24},
doi = {10.4230/LIPICS.WABI.2017.24},
timestamp = {Thu, 23 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SimonaitisS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ToivonenTU17,
author = {Jarkko Toivonen and
Jussi Taipale and
Esko Ukkonen},
editor = {Russell Schwartz and
Knut Reinert},
title = {Seed-driven Learning of Position Probability Matrices from Large Sequence
Sets},
booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI}
2017, August 21-23, 2017, Boston, MA, {USA}},
series = {LIPIcs},
volume = {88},
pages = {25:1--25:13},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2017},
url = {https://doi.org/10.4230/LIPIcs.WABI.2017.25},
doi = {10.4230/LIPICS.WABI.2017.25},
timestamp = {Fri, 30 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/ToivonenTU17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/X17,
editor = {Russell Schwartz and
Knut Reinert},
title = {Front Matter, Table of Contents, Preface, List of Authors},
booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI}
2017, August 21-23, 2017, Boston, MA, {USA}},
series = {LIPIcs},
volume = {88},
pages = {0:i--0:xiv},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2017},
url = {https://doi.org/10.4230/LIPIcs.WABI.2017.0},
doi = {10.4230/LIPICS.WABI.2017.0},
timestamp = {Thu, 23 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/X17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/wabi/2017,
editor = {Russell Schwartz and
Knut Reinert},
title = {17th International Workshop on Algorithms in Bioinformatics, {WABI}
2017, August 21-23, 2017, Boston, MA, {USA}},
series = {LIPIcs},
volume = {88},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2017},
url = {http://www.dagstuhl.de/dagpub/978-3-95977-050-7},
isbn = {978-3-95977-050-7},
timestamp = {Tue, 11 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/2017.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/AlmirantisCGIMP16,
author = {Yannis Almirantis and
Panagiotis Charalampopoulos and
Jia Gao and
Costas S. Iliopoulos and
Manal Mohamed and
Solon P. Pissis and
Dimitris Polychronopoulos},
editor = {Martin C. Frith and
Christian N{\o}rgaard Storm Pedersen},
title = {Optimal Computation of Avoided Words},
booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI}
2016, Aarhus, Denmark, August 22-24, 2016. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9838},
pages = {1--13},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-43681-4\_1},
doi = {10.1007/978-3-319-43681-4\_1},
timestamp = {Tue, 29 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/AlmirantisCGIMP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BenshaharCHZ16,
author = {Arnon Benshahar and
Vered Chalifa{-}Caspi and
Danny Hermelin and
Michal Ziv{-}Ukelson},
editor = {Martin C. Frith and
Christian N{\o}rgaard Storm Pedersen},
title = {A Biclique Approach to Reference Anchored Gene Blocks and Its Applications
to Pathogenicity Islands},
booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI}
2016, Aarhus, Denmark, August 22-24, 2016. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9838},
pages = {14--26},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-43681-4\_2},
doi = {10.1007/978-3-319-43681-4\_2},
timestamp = {Thu, 15 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BenshaharCHZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BomersbachCV16,
author = {Anna Bomersbach and
Marco Chiarandini and
Fabio Vandin},
editor = {Martin C. Frith and
Christian N{\o}rgaard Storm Pedersen},
title = {An Efficient Branch and Cut Algorithm to Find Frequently Mutated Subnetworks
in Cancer},
booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI}
2016, Aarhus, Denmark, August 22-24, 2016. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9838},
pages = {27--39},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-43681-4\_3},
doi = {10.1007/978-3-319-43681-4\_3},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BomersbachCV16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BrejovaGPSV16,
author = {Brona Brejov{\'{a}} and
Askar Gafurov and
Dana Pardubsk{\'{a}} and
Michal Sabo and
Tom{\'{a}}s Vinar},
editor = {Martin C. Frith and
Christian N{\o}rgaard Storm Pedersen},
title = {Isometric Gene Tree Reconciliation Revisited},
booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI}
2016, Aarhus, Denmark, August 22-24, 2016. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9838},
pages = {40--51},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-43681-4\_4},
doi = {10.1007/978-3-319-43681-4\_4},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/BrejovaGPSV16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Brubach16,
author = {Brian Brubach},
editor = {Martin C. Frith and
Christian N{\o}rgaard Storm Pedersen},
title = {Further Improvement in Approximating the Maximum Duo-Preservation
String Mapping Problem},
booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI}
2016, Aarhus, Denmark, August 22-24, 2016. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9838},
pages = {52--64},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-43681-4\_5},
doi = {10.1007/978-3-319-43681-4\_5},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Brubach16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/DavidFT16,
author = {Matthieu David and
Guillaume Fertin and
Dominique Tessier},
editor = {Martin C. Frith and
Christian N{\o}rgaard Storm Pedersen},
title = {SpecTrees: An Efficient Without a Priori Data Structure for {MS/MS}
Spectra Identification},
booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI}
2016, Aarhus, Denmark, August 22-24, 2016. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9838},
pages = {65--76},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-43681-4\_6},
doi = {10.1007/978-3-319-43681-4\_6},
timestamp = {Thu, 15 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/DavidFT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/DeBlasioK16,
author = {Dan F. DeBlasio and
John D. Kececioglu},
editor = {Martin C. Frith and
Christian N{\o}rgaard Storm Pedersen},
title = {Predicting Core Columns of Protein Multiple Sequence Alignments for
Improved Parameter Advising},
booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI}
2016, Aarhus, Denmark, August 22-24, 2016. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9838},
pages = {77--89},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-43681-4\_7},
doi = {10.1007/978-3-319-43681-4\_7},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/DeBlasioK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/DengF16,
author = {Yun Deng and
David Fern{\'{a}}ndez{-}Baca},
editor = {Martin C. Frith and
Christian N{\o}rgaard Storm Pedersen},
title = {Fast Compatibility Testing for Phylogenies with Nested Taxa},
booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI}
2016, Aarhus, Denmark, August 22-24, 2016. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9838},
pages = {90--101},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-43681-4\_8},
doi = {10.1007/978-3-319-43681-4\_8},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/DengF16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/DoerrFBC16,
author = {Daniel Doerr and
Pedro Feij{\~{a}}o and
Metin Balaban and
C{\'{e}}dric Chauve},
editor = {Martin C. Frith and
Christian N{\o}rgaard Storm Pedersen},
title = {The Gene Family-Free Median of Three},
booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI}
2016, Aarhus, Denmark, August 22-24, 2016. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9838},
pages = {102--120},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-43681-4\_9},
doi = {10.1007/978-3-319-43681-4\_9},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/DoerrFBC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/DondiEL16,
author = {Riccardo Dondi and
Nadia El{-}Mabrouk and
Manuel Lafond},
editor = {Martin C. Frith and
Christian N{\o}rgaard Storm Pedersen},
title = {Correction of Weighted Orthology and Paralogy Relations - Complexity
and Algorithmic Results},
booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI}
2016, Aarhus, Denmark, August 22-24, 2016. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9838},
pages = {121--136},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-43681-4\_10},
doi = {10.1007/978-3-319-43681-4\_10},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/DondiEL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/El-KebirRSSZZZ16,
author = {Mohammed El{-}Kebir and
Benjamin J. Raphael and
Ron Shamir and
Roded Sharan and
Simone Zaccaria and
Meirav Zehavi and
Ron Zeira},
editor = {Martin C. Frith and
Christian N{\o}rgaard Storm Pedersen},
title = {Copy-Number Evolution Problems: Complexity and Algorithms},
booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI}
2016, Aarhus, Denmark, August 22-24, 2016. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9838},
pages = {137--149},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-43681-4\_11},
doi = {10.1007/978-3-319-43681-4\_11},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/El-KebirRSSZZZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ErbertRM16,
author = {Marius Erbert and
Steffen Rechner and
Matthias M{\"{u}}ller{-}Hannemann},
editor = {Martin C. Frith and
Christian N{\o}rgaard Storm Pedersen},
title = {Gerbil: {A} Fast and Memory-Efficient k-mer Counter with GPU-Support},
booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI}
2016, Aarhus, Denmark, August 22-24, 2016. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9838},
pages = {150--161},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-43681-4\_12},
doi = {10.1007/978-3-319-43681-4\_12},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/ErbertRM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/FertinJT16,
author = {Guillaume Fertin and
G{\'{e}}raldine Jean and
Eric Tannier},
editor = {Martin C. Frith and
Christian N{\o}rgaard Storm Pedersen},
title = {Genome Rearrangements on Both Gene Order and Intergenic Regions},
booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI}
2016, Aarhus, Denmark, August 22-24, 2016. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9838},
pages = {162--173},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-43681-4\_13},
doi = {10.1007/978-3-319-43681-4\_13},
timestamp = {Thu, 15 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/FertinJT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/GhuryeP16,
author = {Jay Ghurye and
Mihai Pop},
editor = {Martin C. Frith and
Christian N{\o}rgaard Storm Pedersen},
title = {Better Identification of Repeats in Metagenomic Scaffolding},
booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI}
2016, Aarhus, Denmark, August 22-24, 2016. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9838},
pages = {174--184},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-43681-4\_14},
doi = {10.1007/978-3-319-43681-4\_14},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/GhuryeP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/GilletRTW16,
author = {Ludovic Gillet and
Simon R{\"{o}}sch and
Thomas Tschager and
Peter Widmayer},
editor = {Martin C. Frith and
Christian N{\o}rgaard Storm Pedersen},
title = {A Better Scoring Model for De Novo Peptide Sequencing: The Symmetric
Difference Between Explained and Measured Masses},
booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI}
2016, Aarhus, Denmark, August 22-24, 2016. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9838},
pages = {185--196},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-43681-4\_15},
doi = {10.1007/978-3-319-43681-4\_15},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/GilletRTW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/JagerSSH16,
author = {Sven Jager and
Benjamin Schiller and
Thorsten Strufe and
Kay Hamacher},
editor = {Martin C. Frith and
Christian N{\o}rgaard Storm Pedersen},
title = {StreAM- T{\_}g : Algorithms for Analyzing Coarse Grained {RNA} Dynamics
Based on Markov Models of Connectivity-Graphs},
booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI}
2016, Aarhus, Denmark, August 22-24, 2016. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9838},
pages = {197--209},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-43681-4\_16},
doi = {10.1007/978-3-319-43681-4\_16},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/JagerSSH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/LobodaAS16,
author = {Alexander A. Loboda and
Maxim N. Artyomov and
Alexey A. Sergushichev},
editor = {Martin C. Frith and
Christian N{\o}rgaard Storm Pedersen},
title = {Solving Generalized Maximum-Weight Connected Subgraph Problem for
Network Enrichment Analysis},
booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI}
2016, Aarhus, Denmark, August 22-24, 2016. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9838},
pages = {210--221},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-43681-4\_17},
doi = {10.1007/978-3-319-43681-4\_17},
timestamp = {Mon, 05 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/LobodaAS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MaciucaEMI16,
author = {Sorina Maciuca and
Carlos del Ojo Elias and
Gil McVean and
Zamin Iqbal},
editor = {Martin C. Frith and
Christian N{\o}rgaard Storm Pedersen},
title = {A Natural Encoding of Genetic Variation in a Burrows-Wheeler Transform
to Enable Mapping and Genome Inference},
booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI}
2016, Aarhus, Denmark, August 22-24, 2016. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9838},
pages = {222--233},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-43681-4\_18},
doi = {10.1007/978-3-319-43681-4\_18},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/MaciucaEMI16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/NielsenSH16,
author = {Svend V. Nielsen and
Simon Simonsen and
Asger Hobolth},
editor = {Martin C. Frith and
Christian N{\o}rgaard Storm Pedersen},
title = {Inferring Population Genetic Parameters: Particle Filtering, HMM,
Ripley's K-Function or Runs of Homozygosity?},
booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI}
2016, Aarhus, Denmark, August 22-24, 2016. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9838},
pages = {234--245},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-43681-4\_19},
doi = {10.1007/978-3-319-43681-4\_19},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/NielsenSH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/NovakGP16,
author = {Adam M. Novak and
Erik Garrison and
Benedict Paten},
editor = {Martin C. Frith and
Christian N{\o}rgaard Storm Pedersen},
title = {A Graph Extension of the Positional Burrows-Wheeler Transform and
Its Applications},
booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI}
2016, Aarhus, Denmark, August 22-24, 2016. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9838},
pages = {246--256},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-43681-4\_20},
doi = {10.1007/978-3-319-43681-4\_20},
timestamp = {Thu, 15 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/NovakGP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/OrensteinPMSK16,
author = {Yaron Orenstein and
David Pellow and
Guillaume Mar{\c{c}}ais and
Ron Shamir and
Carl Kingsford},
editor = {Martin C. Frith and
Christian N{\o}rgaard Storm Pedersen},
title = {Compact Universal k-mer Hitting Sets},
booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI}
2016, Aarhus, Denmark, August 22-24, 2016. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9838},
pages = {257--268},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-43681-4\_21},
doi = {10.1007/978-3-319-43681-4\_21},
timestamp = {Fri, 02 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/OrensteinPMSK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/PuZJ16,
author = {Lianrong Pu and
Daming Zhu and
Haitao Jiang},
editor = {Martin C. Frith and
Christian N{\o}rgaard Storm Pedersen},
title = {A New Approximation Algorithm for Unsigned Translocation Sorting},
booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI}
2016, Aarhus, Denmark, August 22-24, 2016. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9838},
pages = {269--280},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-43681-4\_22},
doi = {10.1007/978-3-319-43681-4\_22},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/PuZJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/RenardBA16,
author = {Emilie Renard and
Samuel Branders and
Pierre{-}Antoine Absil},
editor = {Martin C. Frith and
Christian N{\o}rgaard Storm Pedersen},
title = {Independent Component Analysis to Remove Batch Effects from Merged
Microarray Datasets},
booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI}
2016, Aarhus, Denmark, August 22-24, 2016. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9838},
pages = {281--292},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-43681-4\_23},
doi = {10.1007/978-3-319-43681-4\_23},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/RenardBA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/RubertFBSM16,
author = {Diego P. Rubert and
Pedro Feij{\~{a}}o and
Mar{\'{\i}}lia D. V. Braga and
Jens Stoye and
F{\'{a}}bio Viduani Martinez},
editor = {Martin C. Frith and
Christian N{\o}rgaard Storm Pedersen},
title = {A Linear Time Approximation Algorithm for the {DCJ} Distance for Genomes
with Bounded Number of Duplicates},
booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI}
2016, Aarhus, Denmark, August 22-24, 2016. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9838},
pages = {293--306},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-43681-4\_24},
doi = {10.1007/978-3-319-43681-4\_24},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/RubertFBSM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SchroderR16,
author = {Christopher Schr{\"{o}}der and
Sven Rahmann},
editor = {Martin C. Frith and
Christian N{\o}rgaard Storm Pedersen},
title = {A Hybrid Parameter Estimation Algorithm for Beta Mixtures and Applications
to Methylation State Classification},
booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI}
2016, Aarhus, Denmark, August 22-24, 2016. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9838},
pages = {307--319},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-43681-4\_25},
doi = {10.1007/978-3-319-43681-4\_25},
timestamp = {Thu, 05 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SchroderR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/wabi/2016,
editor = {Martin C. Frith and
Christian N{\o}rgaard Storm Pedersen},
title = {Algorithms in Bioinformatics - 16th International Workshop, {WABI}
2016, Aarhus, Denmark, August 22-24, 2016. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9838},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-43681-4},
doi = {10.1007/978-3-319-43681-4},
isbn = {978-3-319-43680-7},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/2016.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/DrinkwaterC15,
author = {Benjamin Drinkwater and
Michael A. Charleston},
editor = {Mihai Pop and
H{\'{e}}l{\`{e}}ne Touzet},
title = {A Sub-quadratic Time and Space Complexity Solution for the Dated Tree
Reconciliation Problem for Select Tree Topologies},
booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI}
2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9289},
pages = {93--107},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-662-48221-6\_7},
doi = {10.1007/978-3-662-48221-6\_7},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/DrinkwaterC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/DumaCBCCL15,
author = {Denise Duma and
Francesca Cordero and
Marco Beccuti and
Gianfranco Ciardo and
Timothy J. Close and
Stefano Lonardi},
editor = {Mihai Pop and
H{\'{e}}l{\`{e}}ne Touzet},
title = {Scrible: Ultra-Accurate Error-Correction of Pooled Sequenced Reads},
booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI}
2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9289},
pages = {162--174},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-662-48221-6\_12},
doi = {10.1007/978-3-662-48221-6\_12},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/DumaCBCCL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/FridG15,
author = {Yelena Frid and
Dan Gusfield},
editor = {Mihai Pop and
H{\'{e}}l{\`{e}}ne Touzet},
title = {A Sparsified Four-Russian Algorithm for {RNA} Folding},
booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI}
2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9289},
pages = {271--285},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-662-48221-6\_20},
doi = {10.1007/978-3-662-48221-6\_20},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/FridG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/GibsonG15,
author = {Todd A. Gibson and
Debra S. Goldberg},
editor = {Mihai Pop and
H{\'{e}}l{\`{e}}ne Touzet},
title = {The Topological Profile of a Model of Protein Network Evolution Can
Direct Model Improvement},
booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI}
2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9289},
pages = {40--52},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-662-48221-6\_3},
doi = {10.1007/978-3-662-48221-6\_3},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/GibsonG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/GrossiIMPPRV15,
author = {Roberto Grossi and
Costas S. Iliopoulos and
Robert Mercas and
Nadia Pisanti and
Solon P. Pissis and
Ahmad Retha and
Fatima Vayani},
editor = {Mihai Pop and
H{\'{e}}l{\`{e}}ne Touzet},
title = {Circular Sequence Comparison with q-grams},
booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI}
2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9289},
pages = {203--216},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-662-48221-6\_15},
doi = {10.1007/978-3-662-48221-6\_15},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/GrossiIMPPRV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/GusfieldN15,
author = {Dan Gusfield and
Rasmus Nielsen},
editor = {Mihai Pop and
H{\'{e}}l{\`{e}}ne Touzet},
title = {Association Mapping for Compound Heterozygous Traits Using Phenotypic
Distance and Integer Programming},
booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI}
2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9289},
pages = {136--147},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-662-48221-6\_10},
doi = {10.1007/978-3-662-48221-6\_10},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/GusfieldN15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/HenriquesM15,
author = {Rui Henriques and
Sara C. Madeira},
editor = {Mihai Pop and
H{\'{e}}l{\`{e}}ne Touzet},
title = {BicNET: Efficient Biclustering of Biological Networks to Unravel Non-Trivial
Modules},
booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI}
2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9289},
pages = {1--15},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-662-48221-6\_1},
doi = {10.1007/978-3-662-48221-6\_1},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/HenriquesM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/HolleyWS15,
author = {Guillaume Holley and
Roland Wittler and
Jens Stoye},
editor = {Mihai Pop and
H{\'{e}}l{\`{e}}ne Touzet},
title = {Bloom Filter Trie - {A} Data Structure for Pan-Genome Storage},
booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI}
2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9289},
pages = {217--230},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-662-48221-6\_16},
doi = {10.1007/978-3-662-48221-6\_16},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/HolleyWS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/HujdurovicKMRT15,
author = {Ademir Hujdurovic and
Ursa Kacar and
Martin Milanic and
Bernard Ries and
Alexandru I. Tomescu},
editor = {Mihai Pop and
H{\'{e}}l{\`{e}}ne Touzet},
title = {Finding a Perfect Phylogeny from Mixed Tumor Samples},
booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI}
2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9289},
pages = {80--92},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-662-48221-6\_6},
doi = {10.1007/978-3-662-48221-6\_6},
timestamp = {Sat, 16 Sep 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/HujdurovicKMRT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/LafondE15,
author = {Manuel Lafond and
Nadia El{-}Mabrouk},
editor = {Mihai Pop and
H{\'{e}}l{\`{e}}ne Touzet},
title = {Orthology Relation and Gene Tree Correction: Complexity Results},
booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI}
2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9289},
pages = {66--79},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-662-48221-6\_5},
doi = {10.1007/978-3-662-48221-6\_5},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/LafondE15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MargalitBH15,
author = {Yaron Margalit and
Yael Baran and
Eran Halperin},
editor = {Mihai Pop and
H{\'{e}}l{\`{e}}ne Touzet},
title = {Multiple-Ancestor Localization for Recently Admixed Individuals},
booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI}
2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9289},
pages = {121--135},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-662-48221-6\_9},
doi = {10.1007/978-3-662-48221-6\_9},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/MargalitBH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MiclotteHDAF15,
author = {Giles Miclotte and
Mahdi Heydari and
Piet Demeester and
Pieter Audenaert and
Jan Fostier},
editor = {Mihai Pop and
H{\'{e}}l{\`{e}}ne Touzet},
title = {Jabba: Hybrid Error Correction for Long Sequencing Reads Using Maximal
Exact Matches},
booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI}
2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9289},
pages = {175--188},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-662-48221-6\_13},
doi = {10.1007/978-3-662-48221-6\_13},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/MiclotteHDAF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/OrensteinB15,
author = {Yaron Orenstein and
Bonnie Berger},
editor = {Mihai Pop and
H{\'{e}}l{\`{e}}ne Touzet},
title = {Efficient Design of Compact Unstructured {RNA} Libraries Covering
All k-mers},
booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI}
2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9289},
pages = {308--325},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-662-48221-6\_23},
doi = {10.1007/978-3-662-48221-6\_23},
timestamp = {Fri, 02 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/OrensteinB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/OunitL15,
author = {Rachid Ounit and
Stefano Lonardi},
editor = {Mihai Pop and
H{\'{e}}l{\`{e}}ne Touzet},
title = {Higher Classification Accuracy of Short Metagenomic Reads by Discriminative
Spaced k-mers},
booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI}
2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9289},
pages = {286--295},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-662-48221-6\_21},
doi = {10.1007/978-3-662-48221-6\_21},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/OunitL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Pizzi15,
author = {Cinzia Pizzi},
editor = {Mihai Pop and
H{\'{e}}l{\`{e}}ne Touzet},
title = {A Filtering Approach for Alignment-Free Biosequences Comparison with
Mismatches},
booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI}
2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9289},
pages = {231--242},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-662-48221-6\_17},
doi = {10.1007/978-3-662-48221-6\_17},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Pizzi15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SeferK15,
author = {Emre Sefer and
Carl Kingsford},
editor = {Mihai Pop and
H{\'{e}}l{\`{e}}ne Touzet},
title = {Semi-nonparametric Modeling of Topological Domain Formation from Epigenetic
Data},
booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI}
2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9289},
pages = {148--161},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-662-48221-6\_11},
doi = {10.1007/978-3-662-48221-6\_11},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SeferK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SichenZLZPCAMS15,
author = {Zhong Sichen and
Lu Zhao and
Yan Liang and
Mohammadzaman Zamani and
Rob Patro and
Rezaul Chowdhury and
Esther M. Arkin and
Joseph S. B. Mitchell and
Steven Skiena},
editor = {Mihai Pop and
H{\'{e}}l{\`{e}}ne Touzet},
title = {Optimizing Read Reversals for Sequence Compression - (Extended Abstract)},
booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI}
2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9289},
pages = {189--202},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-662-48221-6\_14},
doi = {10.1007/978-3-662-48221-6\_14},
timestamp = {Tue, 03 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/SichenZLZPCAMS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SilvaDZS15,
author = {Poly H. da Silva and
Simone Dantas and
Chunfang Zheng and
David Sankoff},
editor = {Mihai Pop and
H{\'{e}}l{\`{e}}ne Touzet},
title = {Graph-Theoretic Modelling of the Domain Chaining Problem},
booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI}
2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9289},
pages = {296--307},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-662-48221-6\_22},
doi = {10.1007/978-3-662-48221-6\_22},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SilvaDZS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SmolyCSLZ15,
author = {Ilan Y. Smoly and
Amir Carmel and
Yonat Shemer{-}Avni and
Esti Yeger Lotem and
Michal Ziv{-}Ukelson},
editor = {Mihai Pop and
H{\'{e}}l{\`{e}}ne Touzet},
title = {Algorithms for Regular Tree Grammar Network Search and Their Application
to Mining Human-Viral Infection Patterns},
booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI}
2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9289},
pages = {53--65},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-662-48221-6\_4},
doi = {10.1007/978-3-662-48221-6\_4},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SmolyCSLZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SunCTM15,
author = {Yihan Sun and
Joseph Crawford and
Jie Tang and
Tijana Milenkovic},
editor = {Mihai Pop and
H{\'{e}}l{\`{e}}ne Touzet},
title = {Simultaneous Optimization of both Node and Edge Conservation in Network
Alignment via {WAVE}},
booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI}
2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9289},
pages = {16--39},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-662-48221-6\_2},
doi = {10.1007/978-3-662-48221-6\_2},
timestamp = {Fri, 14 Sep 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SunCTM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SwensonB15,
author = {Krister M. Swenson and
Mathieu Blanchette},
editor = {Mihai Pop and
H{\'{e}}l{\`{e}}ne Touzet},
title = {Models and Algorithms for Genome Rearrangement with Positional Constraints},
booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI}
2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9289},
pages = {243--256},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-662-48221-6\_18},
doi = {10.1007/978-3-662-48221-6\_18},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SwensonB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/WillJ15,
author = {Sebastian Will and
Hosna Jabbari},
editor = {Mihai Pop and
H{\'{e}}l{\`{e}}ne Touzet},
title = {Sparse {RNA} Folding Revisited: Space-Efficient Minimum Free Energy
Prediction},
booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI}
2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9289},
pages = {257--270},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-662-48221-6\_19},
doi = {10.1007/978-3-662-48221-6\_19},
timestamp = {Mon, 01 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/WillJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ZhouLRHT15,
author = {Jun Zhou and
Yu Lin and
Vaibhav Rajan and
William Hoskins and
Jijun Tang},
editor = {Mihai Pop and
H{\'{e}}l{\`{e}}ne Touzet},
title = {Maximum Parsimony Analysis of Gene Copy Number Changes},
booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI}
2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9289},
pages = {108--120},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-662-48221-6\_8},
doi = {10.1007/978-3-662-48221-6\_8},
timestamp = {Tue, 31 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ZhouLRHT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/wabi/2015,
editor = {Mihai Pop and
H{\'{e}}l{\`{e}}ne Touzet},
title = {Algorithms in Bioinformatics - 15th International Workshop, {WABI}
2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9289},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-662-48221-6},
doi = {10.1007/978-3-662-48221-6},
isbn = {978-3-662-48220-9},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/2015.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BonizzoniVPPR14,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Yuri Pirola and
Marco Previtali and
Raffaella Rizzi},
editor = {Daniel G. Brown and
Burkhard Morgenstern},
title = {Constructing String Graphs in External Memory},
booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI}
2014, Wroclaw, Poland, September 8-10, 2014. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8701},
pages = {311--325},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-662-44753-6\_23},
doi = {10.1007/978-3-662-44753-6\_23},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BonizzoniVPPR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BoriaKLM14,
author = {Nicolas Boria and
Adam Kurpisz and
Samuli Lepp{\"{a}}nen and
Monaldo Mastrolilli},
editor = {Daniel G. Brown and
Burkhard Morgenstern},
title = {Improved Approximation for the Maximum Duo-Preservation String Mapping
Problem},
booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI}
2014, Wroclaw, Poland, September 8-10, 2014. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8701},
pages = {14--25},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-662-44753-6\_2},
doi = {10.1007/978-3-662-44753-6\_2},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/BoriaKLM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BozaBV14,
author = {Vladim{\'{\i}}r Boza and
Brona Brejov{\'{a}} and
Tom{\'{a}}s Vinar},
editor = {Daniel G. Brown and
Burkhard Morgenstern},
title = {{GAML:} Genome Assembly by Maximum Likelihood},
booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI}
2014, Wroclaw, Poland, September 8-10, 2014. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8701},
pages = {122--134},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-662-44753-6\_10},
doi = {10.1007/978-3-662-44753-6\_10},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BozaBV14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BrucknerHK14,
author = {Sharon Bruckner and
Falk H{\"{u}}ffner and
Christian Komusiewicz},
editor = {Daniel G. Brown and
Burkhard Morgenstern},
title = {A Graph Modification Approach for Finding Core-Periphery Structures
in Protein Interaction Networks},
booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI}
2014, Wroclaw, Poland, September 8-10, 2014. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8701},
pages = {340--351},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-662-44753-6\_25},
doi = {10.1007/978-3-662-44753-6\_25},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BrucknerHK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/CominLS14,
author = {Matteo Comin and
Andrea Leoni and
Michele Schimd},
editor = {Daniel G. Brown and
Burkhard Morgenstern},
title = {QCluster: Extending Alignment-Free Measures with Quality Values for
Reads Clustering},
booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI}
2014, Wroclaw, Poland, September 8-10, 2014. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8701},
pages = {1--13},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-662-44753-6\_1},
doi = {10.1007/978-3-662-44753-6\_1},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/CominLS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Compeau14,
author = {Phillip E. C. Compeau},
editor = {Daniel G. Brown and
Burkhard Morgenstern},
title = {A Generalized Cost Model for DCJ-Indel Sorting},
booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI}
2014, Wroclaw, Poland, September 8-10, 2014. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8701},
pages = {38--51},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-662-44753-6\_4},
doi = {10.1007/978-3-662-44753-6\_4},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Compeau14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/CunhaKHF14,
author = {Lu{\'{\i}}s Felipe I. Cunha and
Luis Antonio Brasil Kowada and
Rodrigo de A. Hausen and
Celina M. H. de Figueiredo},
editor = {Daniel G. Brown and
Burkhard Morgenstern},
title = {A Faster 1.375-Approximation Algorithm for Sorting by Transpositions},
booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI}
2014, Wroclaw, Poland, September 8-10, 2014. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8701},
pages = {26--37},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-662-44753-6\_3},
doi = {10.1007/978-3-662-44753-6\_3},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/CunhaKHF14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/GuGK14,
author = {Chen Gu and
Leonidas J. Guibas and
Michael Kerber},
editor = {Daniel G. Brown and
Burkhard Morgenstern},
title = {Topology-Driven Trajectory Synthesis with an Example on Retinal Cell
Motions},
booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI}
2014, Wroclaw, Poland, September 8-10, 2014. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8701},
pages = {326--339},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-662-44753-6\_24},
doi = {10.1007/978-3-662-44753-6\_24},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/GuGK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/HaiminenLP14,
author = {Niina Haiminen and
Claude Lebreton and
Laxmi Parida},
editor = {Daniel G. Brown and
Burkhard Morgenstern},
title = {Best-Fit in Linear Time for Non-generative Population Simulation -
(Extended Abstract)},
booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI}
2014, Wroclaw, Poland, September 8-10, 2014. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8701},
pages = {247--262},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-662-44753-6\_19},
doi = {10.1007/978-3-662-44753-6\_19},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/HaiminenLP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/HajirasoulihaR14,
author = {Iman Hajirasouliha and
Benjamin J. Raphael},
editor = {Daniel G. Brown and
Burkhard Morgenstern},
title = {Reconstructing Mutational History in Multiply Sampled Tumors Using
Perfect Phylogeny Mixtures},
booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI}
2014, Wroclaw, Poland, September 8-10, 2014. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8701},
pages = {354--367},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-662-44753-6\_27},
doi = {10.1007/978-3-662-44753-6\_27},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/HajirasoulihaR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/HuangC14,
author = {Yu{-}Ting Huang and
Marek Chrobak},
editor = {Daniel G. Brown and
Burkhard Morgenstern},
title = {An LP-Rounding Algorithm for Degenerate Primer Design},
booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI}
2014, Wroclaw, Poland, September 8-10, 2014. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8701},
pages = {107--121},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-662-44753-6\_9},
doi = {10.1007/978-3-662-44753-6\_9},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/HuangC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/JalaliP14,
author = {Adrin Jalali and
Nico Pfeifer},
editor = {Daniel G. Brown and
Burkhard Morgenstern},
title = {Interpretable Per Case Weighted Ensemble Method for Cancer Associations},
booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI}
2014, Wroclaw, Poland, September 8-10, 2014. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8701},
pages = {352--353},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-662-44753-6\_26},
doi = {10.1007/978-3-662-44753-6\_26},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/JalaliP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/JiangA14,
author = {Shuai Jiang and
Max A. Alekseyev},
editor = {Daniel G. Brown and
Burkhard Morgenstern},
title = {Linearization of Median Genomes under {DCJ}},
booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI}
2014, Wroclaw, Poland, September 8-10, 2014. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8701},
pages = {97--106},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-662-44753-6\_8},
doi = {10.1007/978-3-662-44753-6\_8},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/JiangA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/KobertFAS14,
author = {Kassian Kobert and
Tom{\'{a}}s Flouri and
Andre J. Aberer and
Alexandros Stamatakis},
editor = {Daniel G. Brown and
Burkhard Morgenstern},
title = {The Divisible Load Balance Problem and Its Application to Phylogenetic
Inference},
booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI}
2014, Wroclaw, Poland, September 8-10, 2014. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8701},
pages = {204--216},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-662-44753-6\_16},
doi = {10.1007/978-3-662-44753-6\_16},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/KobertFAS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/KopczynskiR14,
author = {Dominik Kopczynski and
Sven Rahmann},
editor = {Daniel G. Brown and
Burkhard Morgenstern},
title = {An Online Peak Extraction Algorithm for Ion Mobility Spectrometry
Data},
booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI}
2014, Wroclaw, Poland, September 8-10, 2014. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8701},
pages = {232--246},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-662-44753-6\_18},
doi = {10.1007/978-3-662-44753-6\_18},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/KopczynskiR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/LinP14,
author = {Yu Lin and
Pavel A. Pevzner},
editor = {Daniel G. Brown and
Burkhard Morgenstern},
title = {Manifold de Bruijn Graphs},
booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI}
2014, Wroclaw, Poland, September 8-10, 2014. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8701},
pages = {296--310},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-662-44753-6\_22},
doi = {10.1007/978-3-662-44753-6\_22},
timestamp = {Tue, 31 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/LinP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MartinezFBS14,
author = {F{\'{a}}bio Viduani Martinez and
Pedro Feij{\~{a}}o and
Mar{\'{\i}}lia D. V. Braga and
Jens Stoye},
editor = {Daniel G. Brown and
Burkhard Morgenstern},
title = {On the Family-Free {DCJ} Distance},
booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI}
2014, Wroclaw, Poland, September 8-10, 2014. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8701},
pages = {174--186},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-662-44753-6\_14},
doi = {10.1007/978-3-662-44753-6\_14},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/MartinezFBS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MorgensternZHL14,
author = {Burkhard Morgenstern and
Binyao Zhu and
Sebastian Horwege and
Chris{-}Andr{\'{e}} Leimeister},
editor = {Daniel G. Brown and
Burkhard Morgenstern},
title = {Estimating Evolutionary Distances from Spaced-Word Matches},
booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI}
2014, Wroclaw, Poland, September 8-10, 2014. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8701},
pages = {161--173},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-662-44753-6\_13},
doi = {10.1007/978-3-662-44753-6\_13},
timestamp = {Fri, 02 Mar 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/MorgensternZHL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MuggliPB14,
author = {Martin D. Muggli and
Simon J. Puglisi and
Christina Boucher},
editor = {Daniel G. Brown and
Burkhard Morgenstern},
title = {Efficient Indexed Alignment of Contigs to Optical Maps},
booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI}
2014, Wroclaw, Poland, September 8-10, 2014. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8701},
pages = {68--81},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-662-44753-6\_6},
doi = {10.1007/978-3-662-44753-6\_6},
timestamp = {Mon, 10 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/MuggliPB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Myers14,
author = {Gene Myers},
editor = {Daniel G. Brown and
Burkhard Morgenstern},
title = {Efficient Local Alignment Discovery amongst Noisy Long Reads},
booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI}
2014, Wroclaw, Poland, September 8-10, 2014. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8701},
pages = {52--67},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-662-44753-6\_5},
doi = {10.1007/978-3-662-44753-6\_5},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Myers14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ParidaPR14,
author = {Laxmi Parida and
Cinzia Pizzi and
Simona E. Rombo},
editor = {Daniel G. Brown and
Burkhard Morgenstern},
title = {Entropic Profiles, Maximal Motifs and the Discovery of Significant
Repetitions in Genomic Sequences},
booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI}
2014, Wroclaw, Poland, September 8-10, 2014. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8701},
pages = {148--160},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-662-44753-6\_12},
doi = {10.1007/978-3-662-44753-6\_12},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ParidaPR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SacomotoSMMSL14,
author = {Gustavo Sacomoto and
Blerina Sinaimeri and
Camille Marchet and
Vincent Miele and
Marie{-}France Sagot and
Vincent Lacroix},
editor = {Daniel G. Brown and
Burkhard Morgenstern},
title = {Navigating in a Sea of Repeats in RNA-seq without Drowning},
booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI}
2014, Wroclaw, Poland, September 8-10, 2014. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8701},
pages = {82--96},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-662-44753-6\_7},
doi = {10.1007/978-3-662-44753-6\_7},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SacomotoSMMSL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ScheubertHB14,
author = {Kerstin Scheubert and
Franziska Hufsky and
Sebastian B{\"{o}}cker},
editor = {Daniel G. Brown and
Burkhard Morgenstern},
title = {Multiple Mass Spectrometry Fragmentation Trees Revisited: Boosting
Performance and Quality},
booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI}
2014, Wroclaw, Poland, September 8-10, 2014. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8701},
pages = {217--231},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-662-44753-6\_17},
doi = {10.1007/978-3-662-44753-6\_17},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ScheubertHB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Snir14,
author = {Sagi Snir},
editor = {Daniel G. Brown and
Burkhard Morgenstern},
title = {Pacemaker Partition Identification},
booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI}
2014, Wroclaw, Poland, September 8-10, 2014. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8701},
pages = {281--295},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-662-44753-6\_21},
doi = {10.1007/978-3-662-44753-6\_21},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Snir14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/TsirogiannisSK14,
author = {Constantinos Tsirogiannis and
Brody Sandel and
Adrija Kalvisa},
editor = {Daniel G. Brown and
Burkhard Morgenstern},
title = {New Algorithms for Computing Phylogenetic Biodiversity},
booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI}
2014, Wroclaw, Poland, September 8-10, 2014. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8701},
pages = {187--203},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-662-44753-6\_15},
doi = {10.1007/978-3-662-44753-6\_15},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/TsirogiannisSK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/WillS14,
author = {Sebastian Will and
Peter F. Stadler},
editor = {Daniel G. Brown and
Burkhard Morgenstern},
title = {A Common Framework for Linear and Cyclic Multiple Sequence Alignment
Problems},
booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI}
2014, Wroclaw, Poland, September 8-10, 2014. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8701},
pages = {135--147},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-662-44753-6\_11},
doi = {10.1007/978-3-662-44753-6\_11},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/WillS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/YangJ14,
author = {Ei{-}Wen Yang and
Tao Jiang},
editor = {Daniel G. Brown and
Burkhard Morgenstern},
title = {GDNorm: An Improved Poisson Regression Model for Reducing Biases in
Hi-C Data},
booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI}
2014, Wroclaw, Poland, September 8-10, 2014. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8701},
pages = {263--280},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-662-44753-6\_20},
doi = {10.1007/978-3-662-44753-6\_20},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/YangJ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/wabi/2014,
editor = {Daniel G. Brown and
Burkhard Morgenstern},
title = {Algorithms in Bioinformatics - 14th International Workshop, {WABI}
2014, Wroclaw, Poland, September 8-10, 2014. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8701},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-662-44753-6},
doi = {10.1007/978-3-662-44753-6},
isbn = {978-3-662-44752-9},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/2014.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BackofenFMQS13,
author = {Rolf Backofen and
Markus Fricke and
Manja Marz and
Jing Qin and
Peter F. Stadler},
editor = {Aaron E. Darling and
Jens Stoye},
title = {Distribution of Graph-Distances in Boltzmann Ensembles of {RNA} Secondary
Structures},
booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI}
2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8126},
pages = {112--125},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40453-5\_10},
doi = {10.1007/978-3-642-40453-5\_10},
timestamp = {Tue, 21 Mar 2023 21:00:29 +0100},
biburl = {https://dblp.org/rec/conf/wabi/BackofenFMQS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BockerCK13,
author = {Sebastian B{\"{o}}cker and
Stefan Canzar and
Gunnar W. Klau},
editor = {Aaron E. Darling and
Jens Stoye},
title = {The Generalized Robinson-Foulds Metric},
booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI}
2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8126},
pages = {156--169},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40453-5\_13},
doi = {10.1007/978-3-642-40453-5\_13},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BockerCK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BulteauFKR13,
author = {Laurent Bulteau and
Guillaume Fertin and
Christian Komusiewicz and
Irena Rusu},
editor = {Aaron E. Darling and
Jens Stoye},
title = {A Fixed-Parameter Algorithm for Minimum Common String Partition with
Few Duplications},
booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI}
2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8126},
pages = {244--258},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40453-5\_19},
doi = {10.1007/978-3-642-40453-5\_19},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BulteauFKR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/CuiLBL13,
author = {Xuefeng Cui and
Shuai Cheng Li and
Dongbo Bu and
Ming Li},
editor = {Aaron E. Darling and
Jens Stoye},
title = {Towards Reliable Automatic Protein Structure Alignment},
booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI}
2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8126},
pages = {18--32},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40453-5\_3},
doi = {10.1007/978-3-642-40453-5\_3},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/CuiLBL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/DeshpandeFPB13,
author = {Viraj Deshpande and
Eric D. K. Fung and
Son Pham and
Vineet Bafna},
editor = {Aaron E. Darling and
Jens Stoye},
title = {Cerulean: {A} Hybrid Assembly Using High Throughput Short and Long
Reads},
booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI}
2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8126},
pages = {349--363},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40453-5\_27},
doi = {10.1007/978-3-642-40453-5\_27},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/DeshpandeFPB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/DuhrkopLMB13,
author = {Kai D{\"{u}}hrkop and
Marcus Ludwig and
Marvin Meusel and
Sebastian B{\"{o}}cker},
editor = {Aaron E. Darling and
Jens Stoye},
title = {Faster Mass Decomposition},
booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI}
2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8126},
pages = {45--58},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40453-5\_5},
doi = {10.1007/978-3-642-40453-5\_5},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/DuhrkopLMB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/DumaWGNRACCL13,
author = {Denisa Duma and
Mary Wootters and
Anna C. Gilbert and
Hung Q. Ngo and
Atri Rudra and
Matthew Alpert and
Timothy J. Close and
Gianfranco Ciardo and
Stefano Lonardi},
editor = {Aaron E. Darling and
Jens Stoye},
title = {Accurate Decoding of Pooled Sequenced Data Using Compressed Sensing},
booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI}
2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8126},
pages = {70--84},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40453-5\_7},
doi = {10.1007/978-3-642-40453-5\_7},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/DumaWGNRACCL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/FilippovaPDK13,
author = {Darya Filippova and
Rob Patro and
Geet Duggal and
Carl Kingsford},
editor = {Aaron E. Darling and
Jens Stoye},
title = {Multiscale Identification of Topological Domains in Chromatin},
booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI}
2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8126},
pages = {300--312},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40453-5\_23},
doi = {10.1007/978-3-642-40453-5\_23},
timestamp = {Tue, 03 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/FilippovaPDK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/JanssonSS13,
author = {Jesper Jansson and
Chuanqi Shen and
Wing{-}Kin Sung},
editor = {Aaron E. Darling and
Jens Stoye},
title = {Algorithms for the Majority Rule {(+)} Consensus Tree and the Frequency
Difference Consensus Tree},
booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI}
2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8126},
pages = {141--155},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40453-5\_12},
doi = {10.1007/978-3-642-40453-5\_12},
timestamp = {Tue, 17 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/JanssonSS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/KapunT13,
author = {Evgeny Kapun and
Fedor Tsarev},
editor = {Aaron E. Darling and
Jens Stoye},
title = {On NP-Hardness of the Paired de Bruijn Sound Cycle Problem},
booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI}
2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8126},
pages = {59--69},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40453-5\_6},
doi = {10.1007/978-3-642-40453-5\_6},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/KapunT13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/LeibovichY13,
author = {Limor Leibovich and
Zohar Yakhini},
editor = {Aaron E. Darling and
Jens Stoye},
title = {Mutual Enrichment in Ranked Lists and the Statistical Assessment of
Position Weight Matrix Motifs},
booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI}
2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8126},
pages = {273--286},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40453-5\_21},
doi = {10.1007/978-3-642-40453-5\_21},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/LeibovichY13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MazzaGFS13,
author = {Arnon Mazza and
Irit Gat{-}Viks and
Hesso Farhan and
Roded Sharan},
editor = {Aaron E. Darling and
Jens Stoye},
title = {A Minimum-Labeling Approach for Reconstructing Protein Networks across
Multiple Conditions},
booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI}
2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8126},
pages = {33--44},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40453-5\_4},
doi = {10.1007/978-3-642-40453-5\_4},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/MazzaGFS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MinkinPKVP13,
author = {Ilya Minkin and
Anand Patel and
Mikhail Kolmogorov and
Nikolay Vyahhi and
Son K. Pham},
editor = {Aaron E. Darling and
Jens Stoye},
title = {Sibelia: {A} Scalable and Comprehensive Synteny Block Generation Tool
for Closely Related Microbial Genomes},
booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI}
2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8126},
pages = {215--229},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40453-5\_17},
doi = {10.1007/978-3-642-40453-5\_17},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/MinkinPKVP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ModzelewskiD13,
author = {Michal Modzelewski and
Norbert Dojer},
editor = {Aaron E. Darling and
Jens Stoye},
title = {{MSARC:} Multiple Sequence Alignment by Residue Clustering},
booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI}
2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8126},
pages = {259--272},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40453-5\_20},
doi = {10.1007/978-3-642-40453-5\_20},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ModzelewskiD13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Moret13,
author = {Bernard M. E. Moret},
editor = {Aaron E. Darling and
Jens Stoye},
title = {Extending the Reach of Phylogenetic Inference},
booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI}
2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8126},
pages = {1--2},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40453-5\_1},
doi = {10.1007/978-3-642-40453-5\_1},
timestamp = {Mon, 05 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Moret13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/NairLBM13,
author = {Nishanth Ulhas Nair and
Yu Lin and
Philipp Bucher and
Bernard M. E. Moret},
editor = {Aaron E. Darling and
Jens Stoye},
title = {Phylogenetic Analysis of Cell Types Using Histone Modifications},
booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI}
2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8126},
pages = {326--337},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40453-5\_25},
doi = {10.1007/978-3-642-40453-5\_25},
timestamp = {Tue, 31 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/NairLBM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/NanasiVB13,
author = {Michal N{\'{a}}n{\'{a}}si and
Tom{\'{a}}s Vinar and
Brona Brejov{\'{a}}},
editor = {Aaron E. Darling and
Jens Stoye},
title = {Probabilistic Approaches to Alignment with Tandem Repeats},
booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI}
2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8126},
pages = {287--299},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40453-5\_22},
doi = {10.1007/978-3-642-40453-5\_22},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/NanasiVB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/OnoderaSS13,
author = {Taku Onodera and
Kunihiko Sadakane and
Tetsuo Shibuya},
editor = {Aaron E. Darling and
Jens Stoye},
title = {Detecting Superbubbles in Assembly Graphs},
booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI}
2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8126},
pages = {338--348},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40453-5\_26},
doi = {10.1007/978-3-642-40453-5\_26},
timestamp = {Mon, 06 Nov 2017 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/OnoderaSS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SacomotoLS13,
author = {Gustavo Sacomoto and
Vincent Lacroix and
Marie{-}France Sagot},
editor = {Aaron E. Darling and
Jens Stoye},
title = {A Polynomial Delay Algorithm for the Enumeration of Bubbles with Length
Constraints in Directed Graphs and Its Application to the Detection
of Alternative Splicing in RNA-seq Data},
booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI}
2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8126},
pages = {99--111},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40453-5\_9},
doi = {10.1007/978-3-642-40453-5\_9},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SacomotoLS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SalikhovSK13,
author = {Kamil Salikhov and
Gustavo Sacomoto and
Gregory Kucherov},
editor = {Aaron E. Darling and
Jens Stoye},
title = {Using Cascading Bloom Filters to Improve the Memory Usage for de Brujin
Graphs},
booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI}
2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8126},
pages = {364--376},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40453-5\_28},
doi = {10.1007/978-3-642-40453-5\_28},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/SalikhovSK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SimhaS13,
author = {Ramanuja Simha and
Hagit Shatkay},
editor = {Aaron E. Darling and
Jens Stoye},
title = {Protein (Multi-)Location Prediction: Using Location Inter-dependencies
in a Probabilistic Framework},
booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI}
2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8126},
pages = {3--17},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40453-5\_2},
doi = {10.1007/978-3-642-40453-5\_2},
timestamp = {Fri, 02 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/SimhaS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/TomescuKRM13,
author = {Alexandru I. Tomescu and
Anna Kuosmanen and
Romeo Rizzi and
Veli M{\"{a}}kinen},
editor = {Aaron E. Darling and
Jens Stoye},
title = {A Novel Combinatorial Method for Estimating Transcript Expression
with RNA-Seq: Bounding the Number of Paths},
booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI}
2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8126},
pages = {85--98},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40453-5\_8},
doi = {10.1007/978-3-642-40453-5\_8},
timestamp = {Thu, 15 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/TomescuKRM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/TsirogiannisS13,
author = {Constantinos Tsirogiannis and
Brody Sandel},
editor = {Aaron E. Darling and
Jens Stoye},
title = {Computing the Skewness of the Phylogenetic Mean Pairwise Distance
in Linear Time},
booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI}
2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8126},
pages = {170--184},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40453-5\_14},
doi = {10.1007/978-3-642-40453-5\_14},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/TsirogiannisS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Tsourakakis13,
author = {Charalampos E. Tsourakakis},
editor = {Aaron E. Darling and
Jens Stoye},
title = {Modeling Intratumor Gene Copy Number Heterogeneity Using Fluorescence
in Situ Hybridization Data},
booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI}
2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8126},
pages = {313--325},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40453-5\_24},
doi = {10.1007/978-3-642-40453-5\_24},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Tsourakakis13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/VakatiF13,
author = {Sudheer Vakati and
David Fern{\'{a}}ndez{-}Baca},
editor = {Aaron E. Darling and
Jens Stoye},
title = {Characterizing Compatibility and Agreement of Unrooted Trees via Cuts
in Graphs},
booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI}
2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8126},
pages = {185--199},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40453-5\_15},
doi = {10.1007/978-3-642-40453-5\_15},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/VakatiF13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/VenkatachalamGF13,
author = {Balaji Venkatachalam and
Dan Gusfield and
Yelena Frid},
editor = {Aaron E. Darling and
Jens Stoye},
title = {Faster Algorithms for RNA-Folding Using the Four-Russians Method},
booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI}
2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8126},
pages = {126--140},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40453-5\_11},
doi = {10.1007/978-3-642-40453-5\_11},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/VenkatachalamGF13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/WiesekeBM13,
author = {Nicolas Wieseke and
Matthias Bernt and
Martin Middendorf},
editor = {Aaron E. Darling and
Jens Stoye},
title = {Unifying Parsimonious Tree Reconciliation},
booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI}
2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8126},
pages = {200--214},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40453-5\_16},
doi = {10.1007/978-3-642-40453-5\_16},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/WiesekeBM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ZanettiBM13,
author = {Jo{\~{a}}o Paulo Pereira Zanetti and
Priscila Biller and
Jo{\~{a}}o Meidanis},
editor = {Aaron E. Darling and
Jens Stoye},
title = {On the Matrix Median Problem},
booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI}
2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8126},
pages = {230--243},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40453-5\_18},
doi = {10.1007/978-3-642-40453-5\_18},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ZanettiBM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/wabi/2013,
editor = {Aaron E. Darling and
Jens Stoye},
title = {Algorithms in Bioinformatics - 13th International Workshop, {WABI}
2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8126},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40453-5},
doi = {10.1007/978-3-642-40453-5},
isbn = {978-3-642-40452-8},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/2013.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BauerCRS12,
author = {Markus J. Bauer and
Anthony J. Cox and
Giovanna Rosone and
Marinella Sciortino},
editor = {Benjamin J. Raphael and
Jijun Tang},
title = {Lightweight {LCP} Construction for Next-Generation Sequencing Datasets},
booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI}
2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7534},
pages = {326--337},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33122-0\_26},
doi = {10.1007/978-3-642-33122-0\_26},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/BauerCRS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BerntCKMT12,
author = {Matthias Bernt and
Kun{-}Mao Chao and
Jyun{-}Wei Kao and
Martin Middendorf and
Eric Tannier},
editor = {Benjamin J. Raphael and
Jijun Tang},
title = {Preserving Inversion Phylogeny Reconstruction},
booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI}
2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7534},
pages = {1--13},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33122-0\_1},
doi = {10.1007/978-3-642-33122-0\_1},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BerntCKMT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BharHMMBW12,
author = {Anirban Bhar and
Martin Haubrock and
Anirban Mukhopadhyay and
Ujjwal Maulik and
Sanghamitra Bandyopadhyay and
Edgar Wingender},
editor = {Benjamin J. Raphael and
Jijun Tang},
title = {{\(\delta\)}-TRIMAX: Extracting Triclusters and Analysing Coregulation
in Time Series Gene Expression Data},
booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI}
2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7534},
pages = {165--177},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33122-0\_13},
doi = {10.1007/978-3-642-33122-0\_13},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/BharHMMBW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BoweOSS12,
author = {Alexander Bowe and
Taku Onodera and
Kunihiko Sadakane and
Tetsuo Shibuya},
editor = {Benjamin J. Raphael and
Jijun Tang},
title = {Succinct de Bruijn Graphs},
booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI}
2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7534},
pages = {225--235},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33122-0\_18},
doi = {10.1007/978-3-642-33122-0\_18},
timestamp = {Mon, 06 Nov 2017 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/BoweOSS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BrownD12,
author = {Daniel Gregory Brown and
Daniel Dexter},
editor = {Benjamin J. Raphael and
Jijun Tang},
title = {SibJoin: {A} Fast Heuristic for Half-Sibling Reconstruction},
booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI}
2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7534},
pages = {44--56},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33122-0\_4},
doi = {10.1007/978-3-642-33122-0\_4},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BrownD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BrownT12,
author = {Daniel Gregory Brown and
Jakub Truszkowski},
editor = {Benjamin J. Raphael and
Jijun Tang},
title = {Fast Phylogenetic Tree Reconstruction Using Locality-Sensitive Hashing},
booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI}
2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7534},
pages = {14--29},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33122-0\_2},
doi = {10.1007/978-3-642-33122-0\_2},
timestamp = {Mon, 05 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BrownT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/CastellanaLRSPGV12,
author = {Natalie Castellana and
Andrey Lushnikov and
Piotr Rotkiewicz and
Natasha Sefcovic and
Pavel A. Pevzner and
Adam Godzik and
Kira Vyatkina},
editor = {Benjamin J. Raphael and
Jijun Tang},
title = {{MORPH-PRO:} {A} Novel Algorithm and Web Server for Protein Morphing},
booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI}
2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7534},
pages = {262--273},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33122-0\_21},
doi = {10.1007/978-3-642-33122-0\_21},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/CastellanaLRSPGV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ChikhiR12,
author = {Rayan Chikhi and
Guillaume Rizk},
editor = {Benjamin J. Raphael and
Jijun Tang},
title = {Space-Efficient and Exact de Bruijn Graph Representation Based on
a Bloom Filter},
booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI}
2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7534},
pages = {236--248},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33122-0\_19},
doi = {10.1007/978-3-642-33122-0\_19},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ChikhiR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Compeau12,
author = {Phillip E. C. Compeau},
editor = {Benjamin J. Raphael and
Jijun Tang},
title = {A Simplified View of DCJ-Indel Distance},
booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI}
2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7534},
pages = {365--377},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33122-0\_29},
doi = {10.1007/978-3-642-33122-0\_29},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Compeau12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/CoxJRS12,
author = {Anthony J. Cox and
Tobias Jakobi and
Giovanna Rosone and
Ole Schulz{-}Trieglaff},
editor = {Benjamin J. Raphael and
Jijun Tang},
title = {Comparing {DNA} Sequence Collections by Direct Comparison of Compressed
Text Indexes},
booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI}
2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7534},
pages = {214--224},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33122-0\_17},
doi = {10.1007/978-3-642-33122-0\_17},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/CoxJRS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/CuiLBRL12,
author = {Xuefeng Cui and
Shuai Cheng Li and
Dongbo Bu and
Babak Alipanahi Ramandi and
Ming Li},
editor = {Benjamin J. Raphael and
Jijun Tang},
title = {How Accurately Can We Model Protein Structures with Dihedral Angles?},
booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI}
2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7534},
pages = {274--287},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33122-0\_22},
doi = {10.1007/978-3-642-33122-0\_22},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/CuiLBRL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/DeepakFM12,
author = {Akshay Deepak and
David Fern{\'{a}}ndez{-}Baca and
Michelle M. McMahon},
editor = {Benjamin J. Raphael and
Jijun Tang},
title = {Extracting Conflict-Free Information from Multi-labeled Trees},
booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI}
2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7534},
pages = {81--92},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33122-0\_7},
doi = {10.1007/978-3-642-33122-0\_7},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/DeepakFM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/DuggalPSWFKK12,
author = {Geet Duggal and
Rob Patro and
Emre Sefer and
Hao Wang and
Darya Filippova and
Samir Khuller and
Carl Kingsford},
editor = {Benjamin J. Raphael and
Jijun Tang},
title = {Resolving Spatial Inconsistencies in Chromosome Conformation Data},
booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI}
2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7534},
pages = {288--300},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33122-0\_23},
doi = {10.1007/978-3-642-33122-0\_23},
timestamp = {Tue, 03 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/DuggalPSWFKK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/GaoBN12,
author = {Song Gao and
Denis Bertrand and
Niranjan Nagarajan},
editor = {Benjamin J. Raphael and
Jijun Tang},
title = {FinIS: Improved in silico Finishing Using an Exact Quadratic Programming
Formulation},
booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI}
2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7534},
pages = {314--325},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33122-0\_25},
doi = {10.1007/978-3-642-33122-0\_25},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/GaoBN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/GyselSG12,
author = {Rob Gysel and
Kristian Stevens and
Dan Gusfield},
editor = {Benjamin J. Raphael and
Jijun Tang},
title = {Reducing Problems in Unrooted Tree Compatibility to Restricted Triangulations
of Intersection Graphs},
booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI}
2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7534},
pages = {93--105},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33122-0\_8},
doi = {10.1007/978-3-642-33122-0\_8},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/GyselSG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/HalldorssonBS12,
author = {Bjarni V. Halld{\'{o}}rsson and
Dima Blokh and
Roded Sharan},
editor = {Benjamin J. Raphael and
Jijun Tang},
title = {Estimating Population Size via Line Graph Reconstruction},
booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI}
2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7534},
pages = {69--80},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33122-0\_6},
doi = {10.1007/978-3-642-33122-0\_6},
timestamp = {Mon, 05 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/HalldorssonBS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/HouriS12,
author = {Shay Houri and
Roded Sharan},
editor = {Benjamin J. Raphael and
Jijun Tang},
title = {Sign Assignment Problems on Protein Networks},
booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI}
2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7534},
pages = {338--345},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33122-0\_27},
doi = {10.1007/978-3-642-33122-0\_27},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/HouriS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/IerselKLS12,
author = {Leo van Iersel and
Steven Kelk and
Nela Lekic and
C{\'{e}}line Scornavacca},
editor = {Benjamin J. Raphael and
Jijun Tang},
title = {A Practical Approximation Algorithm for Solving Massive Instances
of Hybridization Number},
booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI}
2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7534},
pages = {430--440},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33122-0\_34},
doi = {10.1007/978-3-642-33122-0\_34},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/IerselKLS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/KehrRD12,
author = {Birte Kehr and
Knut Reinert and
Aaron E. Darling},
editor = {Benjamin J. Raphael and
Jijun Tang},
title = {Hidden Breakpoints in Genome Alignments},
booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI}
2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7534},
pages = {391--403},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33122-0\_31},
doi = {10.1007/978-3-642-33122-0\_31},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/KehrRD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/LafondSE12,
author = {Manuel Lafond and
Krister M. Swenson and
Nadia El{-}Mabrouk},
editor = {Benjamin J. Raphael and
Jijun Tang},
title = {An Optimal Reconciliation Algorithm for Gene Trees with Polytomies},
booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI}
2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7534},
pages = {106--122},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33122-0\_9},
doi = {10.1007/978-3-642-33122-0\_9},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/LafondSE12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/LinDHBMLCS12,
author = {Yen{-}Yi Lin and
Phuong Dao and
Faraz Hach and
Marzieh Bakhshi and
Fan Mo and
Anna Lapuk and
Colin C. Collins and
S{\"{u}}leyman Cenk Sahinalp},
editor = {Benjamin J. Raphael and
Jijun Tang},
title = {{CLIIQ:} Accurate Comparative Detection and Quantification of Expressed
Isoforms in a Population},
booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI}
2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7534},
pages = {178--189},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33122-0\_14},
doi = {10.1007/978-3-642-33122-0\_14},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/LinDHBMLCS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MiloZKBDZ12,
author = {Nimrod Milo and
Shay Zakov and
Erez Katzenelson and
Eitan Bachmat and
Yefim Dinitz and
Michal Ziv{-}Ukelson},
editor = {Benjamin J. Raphael and
Jijun Tang},
title = {{RNA} Tree Comparisons via Unrooted Unordered Alignments},
booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI}
2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7534},
pages = {135--148},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33122-0\_11},
doi = {10.1007/978-3-642-33122-0\_11},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/MiloZKBDZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MohimaniKP12,
author = {Hosein Mohimani and
Sangtae Kim and
Pavel A. Pevzner},
editor = {Benjamin J. Raphael and
Jijun Tang},
title = {{MS-DPR:} An Algorithm for Computing Statistical Significance of Spectral
Identifications of Non-linear Peptides},
booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI}
2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7534},
pages = {301--313},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33122-0\_24},
doi = {10.1007/978-3-642-33122-0\_24},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/MohimaniKP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/NguyenDPCRB12,
author = {Thi Hau Nguyen and
Jean{-}Philippe Doyon and
St{\'{e}}phanie Pointet and
Anne{-}Muriel Arigon Chifolleau and
Vincent Ranwez and
Vincent Berry},
editor = {Benjamin J. Raphael and
Jijun Tang},
title = {Accounting for Gene Tree Uncertainties Improves Gene Trees and Reconciliation
Inference},
booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI}
2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7534},
pages = {123--134},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33122-0\_10},
doi = {10.1007/978-3-642-33122-0\_10},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/NguyenDPCRB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/RinaudoPBD12,
author = {Philippe Rinaudo and
Yann Ponty and
Dominique Barth and
Alain Denise},
editor = {Benjamin J. Raphael and
Jijun Tang},
title = {Tree Decomposition and Parameterized Algorithms for {RNA} Structure-Sequence
Alignment Including Tertiary Interactions and Pseudoknots - (Extended
Abstract)},
booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI}
2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7534},
pages = {149--164},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33122-0\_12},
doi = {10.1007/978-3-642-33122-0\_12},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/RinaudoPBD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ShiLZLS12,
author = {Yi Shi and
Xiaoping Liao and
Xinhua Zhang and
Guohui Lin and
Dale Schuurmans},
editor = {Benjamin J. Raphael and
Jijun Tang},
title = {Sparse Learning Based Linear Coherent Bi-clustering},
booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI}
2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7534},
pages = {346--364},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33122-0\_28},
doi = {10.1007/978-3-642-33122-0\_28},
timestamp = {Thu, 12 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/ShiLZLS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ShuttersVF12,
author = {Brad Shutters and
Sudheer Vakati and
David Fern{\'{a}}ndez{-}Baca},
editor = {Benjamin J. Raphael and
Jijun Tang},
title = {Improved Lower Bounds on the Compatibility of Quartets, Triplets,
and Multi-state Characters},
booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI}
2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7534},
pages = {190--200},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33122-0\_15},
doi = {10.1007/978-3-642-33122-0\_15},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ShuttersVF12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SilvaBMD12,
author = {Poly H. da Silva and
Mar{\'{\i}}lia D. V. Braga and
Raphael Machado and
Simone Dantas},
editor = {Benjamin J. Raphael and
Jijun Tang},
title = {DCJ-indel Distance with Distinct Operation Costs},
booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI}
2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7534},
pages = {378--390},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33122-0\_30},
doi = {10.1007/978-3-642-33122-0\_30},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SilvaBMD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Tabei12,
author = {Yasuo Tabei},
editor = {Benjamin J. Raphael and
Jijun Tang},
title = {Succinct Multibit Tree: Compact Representation of Multibit Trees by
Using Succinct Data Structures in Chemical Fingerprint Searches},
booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI}
2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7534},
pages = {201--213},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33122-0\_16},
doi = {10.1007/978-3-642-33122-0\_16},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Tabei12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/TanaseichukBJ12,
author = {Olga Tanaseichuk and
James Borneman and
Tao Jiang},
editor = {Benjamin J. Raphael and
Jijun Tang},
title = {A Probabilistic Approach to Accurate Abundance-Based Binning of Metagenomic
Reads},
booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI}
2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7534},
pages = {404--416},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33122-0\_32},
doi = {10.1007/978-3-642-33122-0\_32},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/TanaseichukBJ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ThomasOV12,
author = {Antoine Thomas and
A{\"{\i}}da Ouangraoua and
Jean{-}St{\'{e}}phane Varr{\'{e}}},
editor = {Benjamin J. Raphael and
Jijun Tang},
title = {Tandem Halving Problems by {DCJ}},
booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI}
2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7534},
pages = {417--429},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33122-0\_33},
doi = {10.1007/978-3-642-33122-0\_33},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ThomasOV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/TsirogiannisSC12,
author = {Constantinos Tsirogiannis and
Brody Sandel and
Dimitris Cheliotis},
editor = {Benjamin J. Raphael and
Jijun Tang},
title = {Efficient Computation of Popular Phylogenetic Tree Measures},
booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI}
2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7534},
pages = {30--43},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33122-0\_3},
doi = {10.1007/978-3-642-33122-0\_3},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/TsirogiannisSC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ValimakiP12,
author = {Niko V{\"{a}}lim{\"{a}}ki and
Simon J. Puglisi},
editor = {Benjamin J. Raphael and
Jijun Tang},
title = {Distributed String Mining for High-Throughput Sequencing Data},
booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI}
2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7534},
pages = {441--452},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33122-0\_35},
doi = {10.1007/978-3-642-33122-0\_35},
timestamp = {Fri, 02 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/ValimakiP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/VyahhiPPP12,
author = {Nikolay Vyahhi and
Alex Pyshkin and
Son K. Pham and
Pavel A. Pevzner},
editor = {Benjamin J. Raphael and
Jijun Tang},
title = {From de Bruijn Graphs to Rectangle Graphs for Genome Assembly},
booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI}
2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7534},
pages = {249--261},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33122-0\_20},
doi = {10.1007/978-3-642-33122-0\_20},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/VyahhiPPP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ZhuN12,
author = {Yun Zhu and
Luay Nakhleh},
editor = {Benjamin J. Raphael and
Jijun Tang},
title = {Reconstructing the Evolution of Molecular Interaction Networks under
the {DMC} and Link Dynamics Models},
booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI}
2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7534},
pages = {57--68},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33122-0\_5},
doi = {10.1007/978-3-642-33122-0\_5},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ZhuN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/wabi/2012,
editor = {Benjamin J. Raphael and
Jijun Tang},
title = {Algorithms in Bioinformatics - 12th International Workshop, {WABI}
2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7534},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33122-0},
doi = {10.1007/978-3-642-33122-0},
isbn = {978-3-642-33121-3},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/2012.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BrejovaBV11,
author = {Brona Brejov{\'{a}} and
Michal Burger and
Tom{\'{a}}s Vinar},
editor = {Teresa M. Przytycka and
Marie{-}France Sagot},
title = {Automated Segmentation of {DNA} Sequences with Complex Evolutionary
Histories},
booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI}
2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6833},
pages = {1--13},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23038-7\_1},
doi = {10.1007/978-3-642-23038-7\_1},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BrejovaBV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BrownT11,
author = {Daniel G. Brown and
Jakub Truszkowski},
editor = {Teresa M. Przytycka and
Marie{-}France Sagot},
title = {Towards a Practical O(n logn) Phylogeny Algorithm},
booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI}
2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6833},
pages = {14--25},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23038-7\_2},
doi = {10.1007/978-3-642-23038-7\_2},
timestamp = {Mon, 05 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BrownT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/CanzarE11,
author = {Stefan Canzar and
Mohammed El{-}Kebir},
editor = {Teresa M. Przytycka and
Marie{-}France Sagot},
title = {A Mathematical Programming Approach to Marker-Assisted Gene Pyramiding},
booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI}
2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6833},
pages = {26--38},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23038-7\_3},
doi = {10.1007/978-3-642-23038-7\_3},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/CanzarE11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ChikhiL11,
author = {Rayan Chikhi and
Dominique Lavenier},
editor = {Teresa M. Przytycka and
Marie{-}France Sagot},
title = {Localized Genome Assembly from Reads to Scaffolds: Practical Traversal
of the Paired String Graph},
booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI}
2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6833},
pages = {39--48},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23038-7\_4},
doi = {10.1007/978-3-642-23038-7\_4},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ChikhiL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/DoerrGMY11,
author = {Daniel Doerr and
Ilan Gronau and
Shlomo Moran and
Irad Yavneh},
editor = {Teresa M. Przytycka and
Marie{-}France Sagot},
title = {Stochastic Errors vs. Modeling Errors in Distance Based Phylogenetic
Reconstructions - (Extended Abstract)},
booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI}
2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6833},
pages = {49--60},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23038-7\_5},
doi = {10.1007/978-3-642-23038-7\_5},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/DoerrGMY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/DongF11,
author = {Jianrong Dong and
David Fern{\'{a}}ndez{-}Baca},
editor = {Teresa M. Przytycka and
Marie{-}France Sagot},
title = {Constructing Large Conservative Supertrees},
booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI}
2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6833},
pages = {61--72},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23038-7\_6},
doi = {10.1007/978-3-642-23038-7\_6},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/DongF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/DonskyW11,
author = {Elad Donsky and
Haim J. Wolfson},
editor = {Teresa M. Przytycka and
Marie{-}France Sagot},
title = {PepCrawler: {A} Fast RRT-Like Algorithm for High-Resolution Refinement
and Binding-Affinity Estimation of Peptide Inhibitors - (Abstract)},
booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI}
2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6833},
pages = {73--75},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23038-7\_7},
doi = {10.1007/978-3-642-23038-7\_7},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/DonskyW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/DorofteiE11,
author = {Andrea Doroftei and
Nadia El{-}Mabrouk},
editor = {Teresa M. Przytycka and
Marie{-}France Sagot},
title = {Removing Noise from Gene Trees},
booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI}
2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6833},
pages = {76--91},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23038-7\_8},
doi = {10.1007/978-3-642-23038-7\_8},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/DorofteiE11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ElatiFNJHK11,
author = {Mohamed Elati and
Rim Fekih and
R{\'{e}}my Nicolle and
Ivan Junier and
Joan H{\'{e}}risson and
Fran{\c{c}}ois K{\'{e}}p{\`{e}}s},
editor = {Teresa M. Przytycka and
Marie{-}France Sagot},
title = {Boosting Binding Sites Prediction Using Gene's Positions},
booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI}
2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6833},
pages = {92--103},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23038-7\_9},
doi = {10.1007/978-3-642-23038-7\_9},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ElatiFNJHK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/GyselLG11,
author = {Rob Gysel and
Fumei Lam and
Dan Gusfield},
editor = {Teresa M. Przytycka and
Marie{-}France Sagot},
title = {Constructing Perfect Phylogenies and Proper Triangulations for Three-State
Characters},
booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI}
2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6833},
pages = {104--115},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23038-7\_10},
doi = {10.1007/978-3-642-23038-7\_10},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/GyselLG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/HabibT11,
author = {Michel Habib and
Thu{-}Hien To},
editor = {Teresa M. Przytycka and
Marie{-}France Sagot},
title = {On a Conjecture about Compatibility of Multi-states Characters},
booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI}
2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6833},
pages = {116--127},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23038-7\_11},
doi = {10.1007/978-3-642-23038-7\_11},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/HabibT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Jiang11,
author = {Jonathan Qiang Jiang},
editor = {Teresa M. Przytycka and
Marie{-}France Sagot},
title = {Learning Protein Functions from Bi-relational Graph of Proteins and
Function Annotations},
booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI}
2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6833},
pages = {128--138},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23038-7\_12},
doi = {10.1007/978-3-642-23038-7\_12},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Jiang11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/KaltenbachCFS11,
author = {Hans{-}Michael Kaltenbach and
Simona Constantinescu and
Justin Feigelman and
J{\"{o}}rg Stelling},
editor = {Teresa M. Przytycka and
Marie{-}France Sagot},
title = {Graph-Based Decomposition of Biochemical Reaction Networks into Monotone
Subsystems},
booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI}
2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6833},
pages = {139--150},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23038-7\_13},
doi = {10.1007/978-3-642-23038-7\_13},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/KaltenbachCFS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/KimuraKN11,
author = {Kouichi Kimura and
Asako Koike and
Kenta Nakai},
editor = {Teresa M. Przytycka and
Marie{-}France Sagot},
title = {Seed-Set Construction by Equi-entropy Partitioning for Efficient and
Sensitive Short-Read Mapping},
booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI}
2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6833},
pages = {151--162},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23038-7\_14},
doi = {10.1007/978-3-642-23038-7\_14},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/KimuraKN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/KovacBV11,
author = {Jakub Kov{\'{a}}c and
Brona Brejov{\'{a}} and
Tom{\'{a}}s Vinar},
editor = {Teresa M. Przytycka and
Marie{-}France Sagot},
title = {A Practical Algorithm for Ancestral Rearrangement Reconstruction},
booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI}
2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6833},
pages = {163--174},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23038-7\_15},
doi = {10.1007/978-3-642-23038-7\_15},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/KovacBV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/LinRM11,
author = {Yu Lin and
Vaibhav Rajan and
Bernard M. E. Moret},
editor = {Teresa M. Przytycka and
Marie{-}France Sagot},
title = {Bootstrapping Phylogenies Inferred from Rearrangement Data},
booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI}
2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6833},
pages = {175--187},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23038-7\_16},
doi = {10.1007/978-3-642-23038-7\_16},
timestamp = {Tue, 31 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/LinRM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MahmudS11,
author = {Md Pavel Mahmud and
Alexander Schliep},
editor = {Teresa M. Przytycka and
Marie{-}France Sagot},
title = {Speeding Up Bayesian {HMM} by the Four Russians Method},
booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI}
2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6833},
pages = {188--200},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23038-7\_17},
doi = {10.1007/978-3-642-23038-7\_17},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/MahmudS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Malod-DogninBKA11,
author = {No{\"{e}}l Malod{-}Dognin and
Mathilde Le Boudic{-}Jamin and
Pritish Kamath and
Rumen Andonov},
editor = {Teresa M. Przytycka and
Marie{-}France Sagot},
title = {Using Dominances for Solving the Protein Family Identification Problem},
booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI}
2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6833},
pages = {201--212},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23038-7\_18},
doi = {10.1007/978-3-642-23038-7\_18},
timestamp = {Mon, 05 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Malod-DogninBKA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MangulANTMZ11,
author = {Serghei Mangul and
Irina Astrovskaya and
Marius Nicolae and
Bassam Tork and
Ion I. Mandoiu and
Alexander Zelikovsky},
editor = {Teresa M. Przytycka and
Marie{-}France Sagot},
title = {Maximum Likelihood Estimation of Incomplete Genomic Spectrum from
{HTS} Data},
booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI}
2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6833},
pages = {213--224},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23038-7\_19},
doi = {10.1007/978-3-642-23038-7\_19},
timestamp = {Mon, 05 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/MangulANTMZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/NoelVR11,
author = {Vincent Noel and
Sergei Vakulenko and
Ovidiu Radulescu},
editor = {Teresa M. Przytycka and
Marie{-}France Sagot},
title = {Algorithm for Identification of Piecewise Smooth Hybrid Systems: Application
to Eukaryotic Cell Cycle Regulation},
booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI}
2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6833},
pages = {225--236},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23038-7\_20},
doi = {10.1007/978-3-642-23038-7\_20},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/NoelVR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/PatroSMMNK11,
author = {Rob Patro and
Emre Sefer and
Justin Malin and
Guillaume Mar{\c{c}}ais and
Saket Navlakha and
Carl Kingsford},
editor = {Teresa M. Przytycka and
Marie{-}France Sagot},
title = {Parsimonious Reconstruction of Network Evolution},
booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI}
2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6833},
pages = {237--249},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23038-7\_21},
doi = {10.1007/978-3-642-23038-7\_21},
timestamp = {Tue, 03 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/PatroSMMNK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/PontyS11,
author = {Yann Ponty and
C{\'{e}}dric Saule},
editor = {Teresa M. Przytycka and
Marie{-}France Sagot},
title = {A Combinatorial Framework for Designing (Pseudoknotted) {RNA} Algorithms},
booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI}
2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6833},
pages = {250--269},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23038-7\_22},
doi = {10.1007/978-3-642-23038-7\_22},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/PontyS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SirenVM11,
author = {Jouni Sir{\'{e}}n and
Niko V{\"{a}}lim{\"{a}}ki and
Veli M{\"{a}}kinen},
editor = {Teresa M. Przytycka and
Marie{-}France Sagot},
title = {Indexing Finite Language Representation of Population Genotypes},
booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI}
2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6833},
pages = {270--281},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23038-7\_23},
doi = {10.1007/978-3-642-23038-7\_23},
timestamp = {Thu, 15 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SirenVM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/StevensK11,
author = {Kristian Stevens and
Bonnie Kirkpatrick},
editor = {Teresa M. Przytycka and
Marie{-}France Sagot},
title = {Efficiently Solvable Perfect Phylogeny Problems on Binary and k-State
Data with Missing Values},
booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI}
2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6833},
pages = {282--297},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23038-7\_24},
doi = {10.1007/978-3-642-23038-7\_24},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/StevensK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/TanaseichukBJ11,
author = {Olga Tanaseichuk and
James Borneman and
Tao Jiang},
editor = {Teresa M. Przytycka and
Marie{-}France Sagot},
title = {Separating Metagenomic Short Reads into Genomes via Clustering - (Extended
Abstract)},
booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI}
2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6833},
pages = {298--313},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23038-7\_25},
doi = {10.1007/978-3-642-23038-7\_25},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/TanaseichukBJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/VandinUR11,
author = {Fabio Vandin and
Eli Upfal and
Benjamin J. Raphael},
editor = {Teresa M. Przytycka and
Marie{-}France Sagot},
title = {Finding Driver Pathways in Cancer: Models and Algorithms},
booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI}
2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6833},
pages = {314--325},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23038-7\_26},
doi = {10.1007/978-3-642-23038-7\_26},
timestamp = {Mon, 16 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/VandinUR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/WhitneyKCBBB11,
author = {Joseph Andrew Whitney and
Judice L. Y. Koh and
Michael Costanzo and
Grant Brown and
Charles Boone and
Michael Brudno},
editor = {Teresa M. Przytycka and
Marie{-}France Sagot},
title = {Clustering with Overlap for Genetic Interaction Networks via Local
Search Optimization},
booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI}
2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6833},
pages = {326--338},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23038-7\_27},
doi = {10.1007/978-3-642-23038-7\_27},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/WhitneyKCBBB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/XiaoZML11,
author = {Hang Xiao and
Melvin Zhang and
Axel Mosig and
Hon Wai Leong},
editor = {Teresa M. Przytycka and
Marie{-}France Sagot},
title = {Dynamic Programming Algorithms for Efficiently Computing Cosegmentations
between Biological Images},
booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI}
2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6833},
pages = {339--350},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23038-7\_28},
doi = {10.1007/978-3-642-23038-7\_28},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/XiaoZML11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/XuM11,
author = {Andrew Wei Xu and
Bernard M. E. Moret},
editor = {Teresa M. Przytycka and
Marie{-}France Sagot},
title = {{GASTS:} Parsimony Scoring under Rearrangements},
booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI}
2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6833},
pages = {351--363},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23038-7\_29},
doi = {10.1007/978-3-642-23038-7\_29},
timestamp = {Mon, 05 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/XuM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ZhengSLS11,
author = {Chunfang Zheng and
Krister M. Swenson and
Eric Lyons and
David Sankoff},
editor = {Teresa M. Przytycka and
Marie{-}France Sagot},
title = {OMG! Orthologs in Multiple Genomes - Competing Graph-Theoretical Formulations},
booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI}
2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6833},
pages = {364--375},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23038-7\_30},
doi = {10.1007/978-3-642-23038-7\_30},
timestamp = {Sun, 24 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ZhengSLS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/wabi/2011,
editor = {Teresa M. Przytycka and
Marie{-}France Sagot},
title = {Algorithms in Bioinformatics - 11th International Workshop, {WABI}
2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6833},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23038-7},
doi = {10.1007/978-3-642-23038-7},
isbn = {978-3-642-23037-0},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/2011.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/AzadLFQP10,
author = {Ariful Azad and
Johannes Langguth and
Youhan Fang and
Yuan (Alan) Qi and
Alex Pothen},
editor = {Vincent Moulton and
Mona Singh},
title = {Identifying Rare Cell Populations in Comparative Flow Cytometry},
booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI}
2010, Liverpool, UK, September 6-8, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6293},
pages = {162--175},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15294-8\_14},
doi = {10.1007/978-3-642-15294-8\_14},
timestamp = {Sat, 22 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/AzadLFQP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BertrandGBE10,
author = {Denis Bertrand and
Yves Gagnon and
Mathieu Blanchette and
Nadia El{-}Mabrouk},
editor = {Vincent Moulton and
Mona Singh},
title = {Reconstruction of Ancestral Genome Subject to Whole Genome Duplication,
Speciation, Rearrangement and Loss},
booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI}
2010, Liverpool, UK, September 6-8, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6293},
pages = {78--89},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15294-8\_7},
doi = {10.1007/978-3-642-15294-8\_7},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BertrandGBE10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BordewichM10,
author = {Magnus Bordewich and
Radu Mihaescu},
editor = {Vincent Moulton and
Mona Singh},
title = {Accuracy Guarantees for Phylogeny Reconstruction Algorithms Based
on Balanced Minimum Evolution},
booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI}
2010, Liverpool, UK, September 6-8, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6293},
pages = {250--261},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15294-8\_21},
doi = {10.1007/978-3-642-15294-8\_21},
timestamp = {Thu, 15 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BordewichM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BragaWS10,
author = {Mar{\'{\i}}lia D. V. Braga and
Eyla Willing and
Jens Stoye},
editor = {Vincent Moulton and
Mona Singh},
title = {Genomic Distance with {DCJ} and Indels},
booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI}
2010, Liverpool, UK, September 6-8, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6293},
pages = {90--101},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15294-8\_8},
doi = {10.1007/978-3-642-15294-8\_8},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/BragaWS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BrownB10,
author = {Daniel G. Brown and
Tanya Y. Berger{-}Wolf},
editor = {Vincent Moulton and
Mona Singh},
title = {Discovering Kinship through Small Subsets},
booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI}
2010, Liverpool, UK, September 6-8, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6293},
pages = {111--123},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15294-8\_10},
doi = {10.1007/978-3-642-15294-8\_10},
timestamp = {Mon, 05 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BrownB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/CsurosJB10,
author = {Mikl{\'{o}}s Cs{\"{u}}r{\"{o}}s and
Szilveszter Juhos and
Attila B{\'{e}}rces},
editor = {Vincent Moulton and
Mona Singh},
title = {Fast Mapping and Precise Alignment of {AB} SOLiD Color Reads to Reference
{DNA}},
booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI}
2010, Liverpool, UK, September 6-8, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6293},
pages = {176--188},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15294-8\_15},
doi = {10.1007/978-3-642-15294-8\_15},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/CsurosJB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/DoanE10,
author = {Duong Dai Doan and
Patricia A. Evans},
editor = {Vincent Moulton and
Mona Singh},
title = {Fixed-Parameter Algorithm for Haplotype Inferences on General Pedigrees
with Small Number of Sites},
booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI}
2010, Liverpool, UK, September 6-8, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6293},
pages = {124--135},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15294-8\_11},
doi = {10.1007/978-3-642-15294-8\_11},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/DoanE10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/FridG10,
author = {Yelena Frid and
Dan Gusfield},
editor = {Vincent Moulton and
Mona Singh},
title = {A Worst-Case and Practical Speedup for the {RNA} Co-folding Problem
Using the \emph{Four-Russians} Idea},
booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI}
2010, Liverpool, UK, September 6-8, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6293},
pages = {1--12},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15294-8\_1},
doi = {10.1007/978-3-642-15294-8\_1},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/FridG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/GamzuSS10,
author = {Iftah Gamzu and
Danny Segev and
Roded Sharan},
editor = {Vincent Moulton and
Mona Singh},
title = {Improved Orientations of Physical Networks},
booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI}
2010, Liverpool, UK, September 6-8, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6293},
pages = {215--225},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15294-8\_18},
doi = {10.1007/978-3-642-15294-8\_18},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/GamzuSS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/HeE10,
author = {Dan He and
Eleazar Eskin},
editor = {Vincent Moulton and
Mona Singh},
title = {Effective Algorithms for Fusion Gene Detection},
booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI}
2010, Liverpool, UK, September 6-8, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6293},
pages = {312--324},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15294-8\_26},
doi = {10.1007/978-3-642-15294-8\_26},
timestamp = {Tue, 27 Mar 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/HeE10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/HosurSB10,
author = {Raghavendra Hosur and
Rohit Singh and
Bonnie Berger},
editor = {Vincent Moulton and
Mona Singh},
title = {Sparse Estimation for Structural Variability},
booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI}
2010, Liverpool, UK, September 6-8, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6293},
pages = {13--27},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15294-8\_2},
doi = {10.1007/978-3-642-15294-8\_2},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/HosurSB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/HufskyKJSB10,
author = {Franziska Hufsky and
L{\'{e}}on Kuchenbecker and
Katharina Jahn and
Jens Stoye and
Sebastian B{\"{o}}cker},
editor = {Vincent Moulton and
Mona Singh},
title = {Swiftly Computing Center Strings},
booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI}
2010, Liverpool, UK, September 6-8, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6293},
pages = {325--336},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15294-8\_27},
doi = {10.1007/978-3-642-15294-8\_27},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/HufskyKJSB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/JanssonLL10,
author = {Jesper Jansson and
Richard S. Lemence and
Andrzej Lingas},
editor = {Vincent Moulton and
Mona Singh},
title = {The Complexity of Inferring a Minimally Resolved Phylogenetic Supertree},
booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI}
2010, Liverpool, UK, September 6-8, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6293},
pages = {262--273},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15294-8\_22},
doi = {10.1007/978-3-642-15294-8\_22},
timestamp = {Tue, 17 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/JanssonLL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Kirkpatrick10,
author = {Bonnie Kirkpatrick},
editor = {Vincent Moulton and
Mona Singh},
title = {Haplotypes versus Genotypes on Pedigrees},
booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI}
2010, Liverpool, UK, September 6-8, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6293},
pages = {136--147},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15294-8\_12},
doi = {10.1007/978-3-642-15294-8\_12},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Kirkpatrick10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/KonagurthuACBZ10,
author = {Arun Siddharth Konagurthu and
Lloyd Allison and
Thomas C. Conway and
Bryan Beresford{-}Smith and
Justin Zobel},
editor = {Vincent Moulton and
Mona Singh},
title = {Design of an Efficient Out-of-Core Read Alignment Algorithm},
booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI}
2010, Liverpool, UK, September 6-8, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6293},
pages = {189--201},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15294-8\_16},
doi = {10.1007/978-3-642-15294-8\_16},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/KonagurthuACBZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/KristensenP10,
author = {Thomas Greve Kristensen and
Christian N. S. Pedersen},
editor = {Vincent Moulton and
Mona Singh},
title = {Data Structures for Accelerating Tanimoto Queries on Real Valued Vectors},
booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI}
2010, Liverpool, UK, September 6-8, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6293},
pages = {28--39},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15294-8\_3},
doi = {10.1007/978-3-642-15294-8\_3},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/KristensenP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MarschallR10,
author = {Tobias Marschall and
Sven Rahmann},
editor = {Vincent Moulton and
Mona Singh},
title = {Speeding Up Exact Motif Discovery by Bounding the Expected Clump Size},
booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI}
2010, Liverpool, UK, September 6-8, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6293},
pages = {337--349},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15294-8\_28},
doi = {10.1007/978-3-642-15294-8\_28},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/MarschallR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MilreuABCMSSL10,
author = {Paulo Vieira Milreu and
Vicente Acu{\~{n}}a and
Etienne Birmel{\'{e}} and
Pierluigi Crescenzi and
Alberto Marchetti{-}Spaccamela and
Marie{-}France Sagot and
Leen Stougie and
Vincent Lacroix},
editor = {Vincent Moulton and
Mona Singh},
title = {Enumerating Chemical Organisations in Consistent Metabolic Networks:
Complexity and Algorithms},
booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI}
2010, Liverpool, UK, September 6-8, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6293},
pages = {226--237},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15294-8\_19},
doi = {10.1007/978-3-642-15294-8\_19},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/MilreuABCMSSL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MohlSWBS10,
author = {Mathias M{\"{o}}hl and
Raheleh Salari and
Sebastian Will and
Rolf Backofen and
S{\"{u}}leyman Cenk Sahinalp},
editor = {Vincent Moulton and
Mona Singh},
title = {Sparsification of {RNA} Structure Prediction Including Pseudoknots},
booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI}
2010, Liverpool, UK, September 6-8, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6293},
pages = {40--51},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15294-8\_4},
doi = {10.1007/978-3-642-15294-8\_4},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/MohlSWBS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/NicolaeMMZ10,
author = {Marius Nicolae and
Serghei Mangul and
Ion I. Mandoiu and
Alexander Zelikovsky},
editor = {Vincent Moulton and
Mona Singh},
title = {Estimation of Alternative Splicing isoform Frequencies from RNA-Seq
Data},
booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI}
2010, Liverpool, UK, September 6-8, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6293},
pages = {202--214},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15294-8\_17},
doi = {10.1007/978-3-642-15294-8\_17},
timestamp = {Mon, 05 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/NicolaeMMZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/PirolaBJ10,
author = {Yuri Pirola and
Paola Bonizzoni and
Tao Jiang},
editor = {Vincent Moulton and
Mona Singh},
title = {Haplotype Inference on Pedigrees with Recombinations and Mutations},
booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI}
2010, Liverpool, UK, September 6-8, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6293},
pages = {148--161},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15294-8\_13},
doi = {10.1007/978-3-642-15294-8\_13},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/PirolaBJ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/RibeiroS10,
author = {Pedro Manuel Pinto Ribeiro and
Fernando M. A. Silva},
editor = {Vincent Moulton and
Mona Singh},
title = {Efficient Subgraph Frequency Estimation with G-Tries},
booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI}
2010, Liverpool, UK, September 6-8, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6293},
pages = {238--249},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15294-8\_20},
doi = {10.1007/978-3-642-15294-8\_20},
timestamp = {Fri, 30 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/RibeiroS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SchonhuthSS10,
author = {Alexander Sch{\"{o}}nhuth and
Raheleh Salari and
S{\"{u}}leyman Cenk Sahinalp},
editor = {Vincent Moulton and
Mona Singh},
title = {Pair {HMM} Based Gap Statistics for Re-evaluation of Indels in Alignments
with Affine Gap Penalties},
booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI}
2010, Liverpool, UK, September 6-8, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6293},
pages = {350--361},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15294-8\_29},
doi = {10.1007/978-3-642-15294-8\_29},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SchonhuthSS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/StevensG10,
author = {Kristian Stevens and
Dan Gusfield},
editor = {Vincent Moulton and
Mona Singh},
title = {Reducing Multi-state to Binary Perfect Phylogeny with Applications
to Missing, Removable, Inserted, and Deleted Data},
booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI}
2010, Liverpool, UK, September 6-8, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6293},
pages = {274--287},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15294-8\_23},
doi = {10.1007/978-3-642-15294-8\_23},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/StevensG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SwensonBS10,
author = {Krister M. Swenson and
Ghada Badr and
David Sankoff},
editor = {Vincent Moulton and
Mona Singh},
title = {Listing All Sorting Reversals in Quadratic Time},
booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI}
2010, Liverpool, UK, September 6-8, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6293},
pages = {102--110},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15294-8\_9},
doi = {10.1007/978-3-642-15294-8\_9},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SwensonBS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SwensonSLW10,
author = {M. Shel Swenson and
Rahul Suri and
C. Randal Linder and
Tandy J. Warnow},
editor = {Vincent Moulton and
Mona Singh},
title = {An Experimental Study of Quartets MaxCut and Other Supertree Methods},
booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI}
2010, Liverpool, UK, September 6-8, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6293},
pages = {288--299},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15294-8\_24},
doi = {10.1007/978-3-642-15294-8\_24},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SwensonSLW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/TheisJG10,
author = {Corinna Theis and
Stefan Janssen and
Robert Giegerich},
editor = {Vincent Moulton and
Mona Singh},
title = {Prediction of {RNA} Secondary Structure Including Kissing Hairpin
Motifs},
booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI}
2010, Liverpool, UK, September 6-8, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6293},
pages = {52--64},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15294-8\_5},
doi = {10.1007/978-3-642-15294-8\_5},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/TheisJG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Yeang10,
author = {Chen{-}Hsiang Yeang},
editor = {Vincent Moulton and
Mona Singh},
title = {Quantifying the Strength of Natural Selection of a Motif Sequence},
booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI}
2010, Liverpool, UK, September 6-8, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6293},
pages = {362--373},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15294-8\_30},
doi = {10.1007/978-3-642-15294-8\_30},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Yeang10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ZakovTZ10,
author = {Shay Zakov and
Dekel Tsur and
Michal Ziv{-}Ukelson},
editor = {Vincent Moulton and
Mona Singh},
title = {Reducing the Worst Case Running Times of a Family of {RNA} and {CFG}
Problems, Using Valiant's Approach},
booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI}
2010, Liverpool, UK, September 6-8, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6293},
pages = {65--77},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15294-8\_6},
doi = {10.1007/978-3-642-15294-8\_6},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ZakovTZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ZhangC10,
author = {Louxin Zhang and
Yun Cui},
editor = {Vincent Moulton and
Mona Singh},
title = {An Efficient Method for DNA-Based Species Assignment via Gene Tree
and Species Tree Reconciliation},
booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI}
2010, Liverpool, UK, September 6-8, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6293},
pages = {300--311},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15294-8\_25},
doi = {10.1007/978-3-642-15294-8\_25},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ZhangC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/wabi/2010,
editor = {Vincent Moulton and
Mona Singh},
title = {Algorithms in Bioinformatics, 10th International Workshop, {WABI}
2010, Liverpool, UK, September 6-8, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6293},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15294-8},
doi = {10.1007/978-3-642-15294-8},
isbn = {978-3-642-15293-1},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/2010.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BockerRS09,
author = {Sebastian B{\"{o}}cker and
Florian Rasche and
Tamara Steijger},
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {Annotating Fragmentation Patterns},
booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
pages = {13--24},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6\_2},
doi = {10.1007/978-3-642-04241-6\_2},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BockerRS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BonizzoniVDPR09,
author = {Paola Bonizzoni and
Gianluca Della Vedova and
Riccardo Dondi and
Yuri Pirola and
Raffaella Rizzi},
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {Minimum Factorization Agreement of Spliced ESTs},
booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
pages = {1--12},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6\_1},
doi = {10.1007/978-3-642-04241-6\_1},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BonizzoniVDPR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ChitsazBS09,
author = {Hamidreza Chitsaz and
Rolf Backofen and
S{\"{u}}leyman Cenk Sahinalp},
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {biRNA: Fast {RNA-RNA} Binding Sites Prediction},
booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
pages = {25--36},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6\_3},
doi = {10.1007/978-3-642-04241-6\_3},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ChitsazBS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/DaoSHHSE09,
author = {Phuong Dao and
Alexander Sch{\"{o}}nhuth and
Fereydoun Hormozdiari and
Iman Hajirasouliha and
S{\"{u}}leyman Cenk Sahinalp and
Martin Ester},
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {Quantifying Systemic Evolutionary Changes by Color Coding Confidence-Scored
{PPI} Networks},
booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
pages = {37--48},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6\_4},
doi = {10.1007/978-3-642-04241-6\_4},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/DaoSHHSE09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/DeBlasioBZ09,
author = {Daniel DeBlasio and
Jocelyne Bruand and
Shaojie Zhang},
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {PMFastR: {A} New Approach to Multiple {RNA} Structure Alignment},
booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
pages = {49--61},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6\_5},
doi = {10.1007/978-3-642-04241-6\_5},
timestamp = {Thu, 15 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/DeBlasioBZ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/DongFM09,
author = {Jianrong Dong and
David Fern{\'{a}}ndez{-}Baca and
Fred R. McMorris},
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {Constructing Majority-Rule Supertrees},
booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
pages = {73--84},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6\_7},
doi = {10.1007/978-3-642-04241-6\_7},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/DongFM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/FeijaoM09,
author = {Pedro Feij{\~{a}}o and
Jo{\~{a}}o Meidanis},
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {{SCJ:} {A} Variant of Breakpoint Distance for Which Sorting, Genome
Median and Genome Halving Problems Are Easy},
booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
pages = {85--96},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6\_8},
doi = {10.1007/978-3-642-04241-6\_8},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/FeijaoM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/FridG09,
author = {Yelena Frid and
Dan Gusfield},
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {A Simple, Practical and Complete \emph{O}({\textbackslash}frac\emph{n}\({}^{\mbox{3}}\)
log\emph{n})O({\textbackslash}frac\{n3\}\{ {\textbackslash}log n\})-Time
Algorithm for {RNA} Folding Using the \emph{Four-Russians} Speedup},
booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
pages = {97--107},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6\_9},
doi = {10.1007/978-3-642-04241-6\_9},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/FridG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/GirdeaNK09,
author = {Marta G{\^{\i}}rdea and
Laurent No{\'{e}} and
Gregory Kucherov},
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {Back-Translation for Discovering Distant Protein Homologies},
booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
pages = {108--120},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6\_10},
doi = {10.1007/978-3-642-04241-6\_10},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/GirdeaNK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/GrossiPPPUV09,
author = {Roberto Grossi and
Andrea Pietracaprina and
Nadia Pisanti and
Geppino Pucci and
Eli Upfal and
Fabio Vandin},
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {{MADMX:} {A} Novel Strategy for Maximal Dense Motif Extraction},
booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
pages = {362--374},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6\_30},
doi = {10.1007/978-3-642-04241-6\_30},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/GrossiPPPUV09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/HancockM09,
author = {Timothy Hancock and
Hiroshi Mamitsuka},
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {A Markov Classification Model for Metabolic Pathways},
booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
pages = {121--132},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6\_11},
doi = {10.1007/978-3-642-04241-6\_11},
timestamp = {Thu, 15 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/HancockM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/HansenESH09,
author = {Matthew Hansen and
Logan Everett and
Larry N. Singh and
Sridhar Hannenhalli},
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {Mimosa: Mixture Model of Co-expression to Detect Modulators of Regulatory
Interaction},
booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
pages = {133--144},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6\_12},
doi = {10.1007/978-3-642-04241-6\_12},
timestamp = {Sun, 21 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/HansenESH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/HusemannS09,
author = {Peter Husemann and
Jens Stoye},
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {Phylogenetic Comparative Assembly},
booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
pages = {145--156},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6\_13},
doi = {10.1007/978-3-642-04241-6\_13},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/HusemannS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/JiangTLCF09,
author = {Minghui Jiang and
Pedro J. Tejada and
Ramoni O. Lasisi and
Shanhong Cheng and
D. Scott Fechser},
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {K-Partite {RNA} Secondary Structures},
booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
pages = {157--168},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6\_14},
doi = {10.1007/978-3-642-04241-6\_14},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/JiangTLCF09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/KahnMR09,
author = {Crystal L. Kahn and
Shay Mozes and
Benjamin J. Raphael},
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {Efficient Algorithms for Analyzing Segmental Duplications, Deletions,
and Inversions in Genomes},
booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
pages = {169--180},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6\_15},
doi = {10.1007/978-3-642-04241-6\_15},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/KahnMR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/KovacVB09,
author = {Jakub Kov{\'{a}}c and
Tom{\'{a}}s Vinar and
Brona Brejov{\'{a}}},
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {Predicting Gene Structures from Multiple {RT-PCR} Tests},
booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
pages = {181--193},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6\_16},
doi = {10.1007/978-3-642-04241-6\_16},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/KovacVB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/KristensenNP09,
author = {Thomas Greve Kristensen and
Jesper Buus Nielsen and
Christian N. S. Pedersen},
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {A Tree Based Method for the Rapid Screening of Chemical Fingerprints},
booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
pages = {194--205},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6\_17},
doi = {10.1007/978-3-642-04241-6\_17},
timestamp = {Thu, 11 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/KristensenNP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/LamGS09,
author = {Fumei Lam and
Dan Gusfield and
Srinath Sridhar},
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {Generalizing the Four Gamete Condition and Splits Equivalence Theorem:
Perfect Phylogeny on Three State Characters},
booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
pages = {206--219},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6\_18},
doi = {10.1007/978-3-642-04241-6\_18},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/LamGS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/LenaFMVC09,
author = {Pietro di Lena and
Piero Fariselli and
Luciano Margara and
Marco Vassura and
Rita Casadio},
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {On the Upper Bound of the Prediction Accuracy of Residue Contacts
in Proteins with Correlated Mutations: The Case Study of the Similarity
Matrices},
booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
pages = {62--72},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6\_6},
doi = {10.1007/978-3-642-04241-6\_6},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/LenaFMVC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/PengATP09,
author = {Qian Peng and
Max A. Alekseyev and
Glenn Tesler and
Pavel A. Pevzner},
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {Decoding Synteny Blocks and Large-Scale Duplications in Mammalian
and Plant Genomes},
booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
pages = {220--232},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6\_19},
doi = {10.1007/978-3-642-04241-6\_19},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/PengATP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Rastas09,
author = {Pasi Rastas},
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {A General Framework for Local Pairwise Alignment Statistics with Gaps},
booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
pages = {233--245},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6\_20},
doi = {10.1007/978-3-642-04241-6\_20},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Rastas09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/RivalsSKKT09,
author = {Eric Rivals and
Leena Salmela and
Petteri Kiiskinen and
Petri Kalsi and
Jorma Tarhio},
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {mpscan: Fast Localisation of Multiple Reads in Genomes},
booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
pages = {246--260},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6\_21},
doi = {10.1007/978-3-642-04241-6\_21},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/RivalsSKKT09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SalariBS09,
author = {Raheleh Salari and
Rolf Backofen and
S{\"{u}}leyman Cenk Sahinalp},
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {Fast Prediction of {RNA-RNA} Interaction},
booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
pages = {261--272},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6\_22},
doi = {10.1007/978-3-642-04241-6\_22},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SalariBS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SalemZB09,
author = {Saeed Salem and
Mohammed J. Zaki and
Chris Bystroff},
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {FlexSnap: Flexible Non-sequential Protein Structure Alignment},
booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
pages = {273--285},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6\_23},
doi = {10.1007/978-3-642-04241-6\_23},
timestamp = {Mon, 05 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SalemZB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SatoHMAS09,
author = {Kengo Sato and
Michiaki Hamada and
Toutai Mituyama and
Kiyoshi Asai and
Yasubumi Sakakibara},
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {A Non-parametric Bayesian Approach for Predicting {RNA} Secondary
Structures},
booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
pages = {286--297},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6\_24},
doi = {10.1007/978-3-642-04241-6\_24},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/SatoHMAS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SchulzKBVR09,
author = {Marcel H. Schulz and
Sebastian K{\"{o}}hler and
Sebastian Bauer and
Martin Vingron and
Peter N. Robinson},
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {Exact Score Distribution Computation for Similarity Searches in Ontologies},
booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
pages = {298--309},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6\_25},
doi = {10.1007/978-3-642-04241-6\_25},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SchulzKBVR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ShibuyaJS09,
author = {Tetsuo Shibuya and
Jesper Jansson and
Kunihiko Sadakane},
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {Linear-Time Protein 3-D Structure Searching with Insertions and Deletions},
booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
pages = {310--320},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6\_26},
doi = {10.1007/978-3-642-04241-6\_26},
timestamp = {Tue, 17 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ShibuyaJS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SundbergCS09,
author = {Kenneth Sundberg and
Mark J. Clement and
Quinn Snell},
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {Visualizing Phylogenetic Treespace Using Cartographic Projections},
booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
pages = {321--332},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6\_27},
doi = {10.1007/978-3-642-04241-6\_27},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SundbergCS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SwensonBLW09,
author = {M. Shel Swenson and
Fran{\c{c}}ois Barban{\c{c}}on and
C. Randal Linder and
Tandy J. Warnow},
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {A Simulation Study Comparing Supertree and Combined Analysis Methods
Using SMIDGen},
booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
pages = {333--344},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6\_28},
doi = {10.1007/978-3-642-04241-6\_28},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SwensonBLW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/TowficGH09,
author = {Fadi Towfic and
M. Heather West Greenlee and
Vasant G. Honavar},
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {Aligning Biomolecular Networks Using Modular Graph Kernels},
booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
pages = {345--361},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6\_29},
doi = {10.1007/978-3-642-04241-6\_29},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/TowficGH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Wheeler09,
author = {Travis J. Wheeler},
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {Large-Scale Neighbor-Joining with {NINJA}},
booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
pages = {375--389},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6\_31},
doi = {10.1007/978-3-642-04241-6\_31},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Wheeler09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/WhiddenZ09,
author = {Chris Whidden and
Norbert Zeh},
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {A Unifying View on Approximation and {FPT} of Agreement Forests},
booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
pages = {390--402},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6\_32},
doi = {10.1007/978-3-642-04241-6\_32},
timestamp = {Mon, 05 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/WhiddenZ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/WongLSY09,
author = {Thomas K. F. Wong and
Tak Wah Lam and
Wing{-}Kin Sung and
Siu{-}Ming Yiu},
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {Structural Alignment of {RNA} with Complex Pseudoknot Structure},
booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
pages = {403--414},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6\_33},
doi = {10.1007/978-3-642-04241-6\_33},
timestamp = {Fri, 27 Dec 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/WongLSY09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ZhangM09,
author = {Xiuwei Zhang and
Bernard M. E. Moret},
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {Improving Inference of Transcriptional Regulatory Networks Based on
Network Evolutionary Models},
booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
pages = {415--428},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6\_34},
doi = {10.1007/978-3-642-04241-6\_34},
timestamp = {Mon, 05 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ZhangM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/wabi/2009,
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6},
doi = {10.1007/978-3-642-04241-6},
isbn = {978-3-642-04240-9},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/2009.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/AndonovYM08,
author = {Rumen Andonov and
Nicola Yanev and
No{\"{e}}l Malod{-}Dognin},
editor = {Keith A. Crandall and
Jens Lagergren},
title = {An Efficient Lagrangian Relaxation for the Contact Map Overlap Problem},
booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008,
Karlsruhe, Germany, September 15-19, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5251},
pages = {162--173},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87361-7\_14},
doi = {10.1007/978-3-540-87361-7\_14},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/AndonovYM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BattkeMSN08,
author = {Florian Battke and
Carsten M{\"{u}}ller{-}Tidow and
Hubert Serve and
Kay Nieselt},
editor = {Keith A. Crandall and
Jens Lagergren},
title = {Post-Hybridization Quality Measures for Oligos in Genome-Wide Microarray
Experiments},
booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008,
Karlsruhe, Germany, September 15-19, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5251},
pages = {64--75},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87361-7\_6},
doi = {10.1007/978-3-540-87361-7\_6},
timestamp = {Mon, 05 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BattkeMSN08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BockenhauerUKS08,
author = {Hans{-}Joachim B{\"{o}}ckenhauer and
Abu Zafer M. Dayem Ullah and
Leonidas Kapsokalivas and
Kathleen Steinh{\"{o}}fel},
editor = {Keith A. Crandall and
Jens Lagergren},
title = {A Local Move Set for Protein Folding in Triangular Lattice Models},
booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008,
Karlsruhe, Germany, September 15-19, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5251},
pages = {369--381},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87361-7\_31},
doi = {10.1007/978-3-540-87361-7\_31},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BockenhauerUKS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BozdagCL08,
author = {Serdar Bozdag and
Timothy J. Close and
Stefano Lonardi},
editor = {Keith A. Crandall and
Jens Lagergren},
title = {Computing the Minimal Tiling Path from a Physical Map by Integer Linear
Programming},
booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008,
Karlsruhe, Germany, September 15-19, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5251},
pages = {148--161},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87361-7\_13},
doi = {10.1007/978-3-540-87361-7\_13},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BozdagCL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ChoiZHPDE08,
author = {Arthur Choi and
Noah Zaitlen and
Buhm Han and
Knot Pipatsrisawat and
Adnan Darwiche and
Eleazar Eskin},
editor = {Keith A. Crandall and
Jens Lagergren},
title = {Efficient Genome Wide Tagging by Reduction to {SAT}},
booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008,
Karlsruhe, Germany, September 15-19, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5251},
pages = {135--147},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87361-7\_12},
doi = {10.1007/978-3-540-87361-7\_12},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ChoiZHPDE08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/CottretMAMMSS08,
author = {Ludovic Cottret and
Paulo Vieira Milreu and
Vicente Acu{\~{n}}a and
Alberto Marchetti{-}Spaccamela and
F{\'{a}}bio Viduani Martinez and
Marie{-}France Sagot and
Leen Stougie},
editor = {Keith A. Crandall and
Jens Lagergren},
title = {Enumerating Precursor Sets of Target Metabolites in a Metabolic Network},
booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008,
Karlsruhe, Germany, September 15-19, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5251},
pages = {233--244},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87361-7\_20},
doi = {10.1007/978-3-540-87361-7\_20},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/CottretMAMMSS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Damaschke08,
author = {Peter Damaschke},
editor = {Keith A. Crandall and
Jens Lagergren},
title = {Minimum Common String Partition Parameterized},
booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008,
Karlsruhe, Germany, September 15-19, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5251},
pages = {87--98},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87361-7\_8},
doi = {10.1007/978-3-540-87361-7\_8},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Damaschke08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/GrunewaldSFM08,
author = {Stefan Gr{\"{u}}newald and
Andreas Spillner and
Kristoffer Forslund and
Vincent Moulton},
editor = {Keith A. Crandall and
Jens Lagergren},
title = {Constructing Phylogenetic Supernetworks from Quartets},
booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008,
Karlsruhe, Germany, September 15-19, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5251},
pages = {284--295},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87361-7\_24},
doi = {10.1007/978-3-540-87361-7\_24},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/GrunewaldSFM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/HermsR08,
author = {Inke Herms and
Sven Rahmann},
editor = {Keith A. Crandall and
Jens Lagergren},
title = {Computing Alignment Seed Sensitivity with Probabilistic Arithmetic
Automata},
booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008,
Karlsruhe, Germany, September 15-19, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5251},
pages = {318--329},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87361-7\_27},
doi = {10.1007/978-3-540-87361-7\_27},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/HermsR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/HickeyCMZ08,
author = {Glenn Hickey and
Paz Carmi and
Anil Maheshwari and
Norbert Zeh},
editor = {Keith A. Crandall and
Jens Lagergren},
title = {{NAPX:} {A} Polynomial Time Approximation Scheme for the Noah's Ark
Problem},
booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008,
Karlsruhe, Germany, September 15-19, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5251},
pages = {76--86},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87361-7\_7},
doi = {10.1007/978-3-540-87361-7\_7},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/HickeyCMZ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/HusonR08,
author = {Daniel H. Huson and
Regula Rupp},
editor = {Keith A. Crandall and
Jens Lagergren},
title = {Summarizing Multiple Gene Trees Using Cluster Networks},
booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008,
Karlsruhe, Germany, September 15-19, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5251},
pages = {296--305},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87361-7\_25},
doi = {10.1007/978-3-540-87361-7\_25},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/HusonR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/LacroixSGB08,
author = {Vincent Lacroix and
Michael Sammeth and
Roderic Guig{\'{o}} and
Anne Bergeron},
editor = {Keith A. Crandall and
Jens Lagergren},
title = {Exact Transcriptome Reconstruction from Short Sequence Reads},
booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008,
Karlsruhe, Germany, September 15-19, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5251},
pages = {50--63},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87361-7\_5},
doi = {10.1007/978-3-540-87361-7\_5},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/LacroixSGB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/LingnerM08,
author = {Thomas Lingner and
Peter Meinicke},
editor = {Keith A. Crandall and
Jens Lagergren},
title = {Fast Target Set Reduction for Large-Scale Protein Function Prediction:
{A} Multi-class Multi-label Machine Learning Approach},
booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008,
Karlsruhe, Germany, September 15-19, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5251},
pages = {198--209},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87361-7\_17},
doi = {10.1007/978-3-540-87361-7\_17},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/LingnerM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MedvedovskyBZS08,
author = {Alexander Medvedovsky and
Vineet Bafna and
Uri Zwick and
Roded Sharan},
editor = {Keith A. Crandall and
Jens Lagergren},
title = {An Algorithm for Orienting Graphs Based on Cause-Effect Pairs and
Its Applications to Orienting Protein Networks},
booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008,
Karlsruhe, Germany, September 15-19, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5251},
pages = {222--232},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87361-7\_19},
doi = {10.1007/978-3-540-87361-7\_19},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/MedvedovskyBZS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/NikoloskiGSE08,
author = {Zoran Nikoloski and
Sergio Grimbs and
Joachim Selbig and
Oliver Ebenh{\"{o}}h},
editor = {Keith A. Crandall and
Jens Lagergren},
title = {Hardness and Approximability of the Inverse Scope Problem},
booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008,
Karlsruhe, Germany, September 15-19, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5251},
pages = {99--112},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87361-7\_9},
doi = {10.1007/978-3-540-87361-7\_9},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/NikoloskiGSE08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/OngZ08,
author = {Cheng Soon Ong and
Alexander Zien},
editor = {Keith A. Crandall and
Jens Lagergren},
title = {An Automated Combination of Kernels for Predicting Protein Subcellular
Localization},
booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008,
Karlsruhe, Germany, September 15-19, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5251},
pages = {186--197},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87361-7\_16},
doi = {10.1007/978-3-540-87361-7\_16},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/OngZ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/PaluszewskiW08,
author = {Martin Paluszewski and
Pawel Winter},
editor = {Keith A. Crandall and
Jens Lagergren},
title = {Protein Decoy Generation Using Branch and Bound with Efficient Bounding},
booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008,
Karlsruhe, Germany, September 15-19, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5251},
pages = {382--393},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87361-7\_32},
doi = {10.1007/978-3-540-87361-7\_32},
timestamp = {Mon, 05 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/PaluszewskiW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/PfeiferK08,
author = {Nico Pfeifer and
Oliver Kohlbacher},
editor = {Keith A. Crandall and
Jens Lagergren},
title = {Multiple Instance Learning Allows {MHC} Class {II} Epitope Predictions
Across Alleles},
booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008,
Karlsruhe, Germany, September 15-19, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5251},
pages = {210--221},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87361-7\_18},
doi = {10.1007/978-3-540-87361-7\_18},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/PfeiferK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/QuitzauS08,
author = {Jos{\'{e}} Augusto Amgarten Quitzau and
Jens Stoye},
editor = {Keith A. Crandall and
Jens Lagergren},
title = {Detecting Repeat Families in Incompletely Sequenced Genomes},
booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008,
Karlsruhe, Germany, September 15-19, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5251},
pages = {342--353},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87361-7\_29},
doi = {10.1007/978-3-540-87361-7\_29},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/QuitzauS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/RastasKK08,
author = {Pasi Rastas and
Jussi Kollin and
Mikko Koivisto},
editor = {Keith A. Crandall and
Jens Lagergren},
title = {Fast Bayesian Haplotype Inference Via Context Tree Weighting},
booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008,
Karlsruhe, Germany, September 15-19, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5251},
pages = {259--270},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87361-7\_22},
doi = {10.1007/978-3-540-87361-7\_22},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/RastasKK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SalariSHCS08,
author = {Raheleh Salari and
Alexander Sch{\"{o}}nhuth and
Fereydoun Hormozdiari and
Artem Cherkasov and
S{\"{u}}leyman Cenk Sahinalp},
editor = {Keith A. Crandall and
Jens Lagergren},
title = {The Relation between Indel Length and Functional Divergence: {A} Formal
Study},
booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008,
Karlsruhe, Germany, September 15-19, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5251},
pages = {330--341},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87361-7\_28},
doi = {10.1007/978-3-540-87361-7\_28},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SalariSHCS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SchulzWRDRV08,
author = {Marcel H. Schulz and
David Weese and
Tobias Rausch and
Andreas D{\"{o}}ring and
Knut Reinert and
Martin Vingron},
editor = {Keith A. Crandall and
Jens Lagergren},
title = {Fast and Adaptive Variable Order Markov Chain Construction},
booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008,
Karlsruhe, Germany, September 15-19, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5251},
pages = {306--317},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87361-7\_26},
doi = {10.1007/978-3-540-87361-7\_26},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SchulzWRDRV08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SimonsenMP08,
author = {Martin Simonsen and
Thomas Mailund and
Christian N. S. Pedersen},
editor = {Keith A. Crandall and
Jens Lagergren},
title = {Rapid Neighbour-Joining},
booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008,
Karlsruhe, Germany, September 15-19, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5251},
pages = {113--122},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87361-7\_10},
doi = {10.1007/978-3-540-87361-7\_10},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/SimonsenMP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SnirT08,
author = {Sagi Snir and
Tamir Tuller},
editor = {Keith A. Crandall and
Jens Lagergren},
title = {Novel Phylogenetic Network Inference by Combining Maximum Likelihood
and Hidden Markov Models},
booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008,
Karlsruhe, Germany, September 15-19, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5251},
pages = {354--368},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87361-7\_30},
doi = {10.1007/978-3-540-87361-7\_30},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SnirT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SulBW08,
author = {Seung{-}Jin Sul and
Grant R. Brammer and
Tiffani L. Williams},
editor = {Keith A. Crandall and
Jens Lagergren},
title = {Efficiently Computing Arbitrarily-Sized Robinson-Foulds Distance Matrices},
booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008,
Karlsruhe, Germany, September 15-19, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5251},
pages = {123--134},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87361-7\_11},
doi = {10.1007/978-3-540-87361-7\_11},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SulBW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/TannierZS08,
author = {Eric Tannier and
Chunfang Zheng and
David Sankoff},
editor = {Keith A. Crandall and
Jens Lagergren},
title = {Multichromosomal Genome Median and Halving Problems},
booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008,
Karlsruhe, Germany, September 15-19, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5251},
pages = {1--13},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87361-7\_1},
doi = {10.1007/978-3-540-87361-7\_1},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/TannierZS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/XuS08,
author = {Andrew Wei Xu and
David Sankoff},
editor = {Keith A. Crandall and
Jens Lagergren},
title = {Decompositions of Multiple Breakpoint Graphs and Rapid Exact Solutions
to the Median Problem},
booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008,
Karlsruhe, Germany, September 15-19, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5251},
pages = {25--37},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87361-7\_3},
doi = {10.1007/978-3-540-87361-7\_3},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/XuS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/YanovskyRB08,
author = {Vladimir Yanovski and
Stephen M. Rumble and
Michael Brudno},
editor = {Keith A. Crandall and
Jens Lagergren},
title = {Read Mapping Algorithms for Single Molecule Sequencing Data},
booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008,
Karlsruhe, Germany, September 15-19, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5251},
pages = {38--49},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87361-7\_4},
doi = {10.1007/978-3-540-87361-7\_4},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/YanovskyRB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ZhangAT08,
author = {Meng Zhang and
William Arndt and
Jijun Tang},
editor = {Keith A. Crandall and
Jens Lagergren},
title = {A Branch-and-Bound Method for the Multichromosomal Reversal Median
Problem},
booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008,
Karlsruhe, Germany, September 15-19, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5251},
pages = {14--24},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87361-7\_2},
doi = {10.1007/978-3-540-87361-7\_2},
timestamp = {Fri, 01 Feb 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/ZhangAT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ZhangM08,
author = {Xiuwei Zhang and
Bernard M. E. Moret},
editor = {Keith A. Crandall and
Jens Lagergren},
title = {Boosting the Performance of Inference Algorithms for Transcriptional
Regulatory Networks Using a Phylogenetic Approach},
booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008,
Karlsruhe, Germany, September 15-19, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5251},
pages = {245--258},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87361-7\_21},
doi = {10.1007/978-3-540-87361-7\_21},
timestamp = {Mon, 05 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ZhangM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ZhangWMPVT08,
author = {Qi Zhang and
Wei Wang and
Leonard McMillan and
Jan F. Prins and
Fernando Pardo{-}Manuel de Villena and
David Threadgill},
editor = {Keith A. Crandall and
Jens Lagergren},
title = {Genotype Sequence Segmentation: Handling Constraints and Noise},
booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008,
Karlsruhe, Germany, September 15-19, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5251},
pages = {271--283},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87361-7\_23},
doi = {10.1007/978-3-540-87361-7\_23},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ZhangWMPVT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Ziv-UkelsonGWS08,
author = {Michal Ziv{-}Ukelson and
Irit Gat{-}Viks and
Ydo Wexler and
Ron Shamir},
editor = {Keith A. Crandall and
Jens Lagergren},
title = {A Faster Algorithm for {RNA} Co-folding},
booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008,
Karlsruhe, Germany, September 15-19, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5251},
pages = {174--185},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87361-7\_15},
doi = {10.1007/978-3-540-87361-7\_15},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/Ziv-UkelsonGWS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/wabi/2008,
editor = {Keith A. Crandall and
Jens Lagergren},
title = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008,
Karlsruhe, Germany, September 15-19, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5251},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87361-7},
doi = {10.1007/978-3-540-87361-7},
isbn = {978-3-540-87360-0},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/2008.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/AlbertDDKSZW07,
author = {R{\'{e}}ka Albert and
Bhaskar DasGupta and
Riccardo Dondi and
Sema Kachalo and
Eduardo D. Sontag and
Alexander Zelikovsky and
Kelly Westbrooks},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {A Novel Method for Signal Transduction Network Inference from Indirect
Experimental Evidence},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {407--419},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_38},
doi = {10.1007/978-3-540-74126-8\_38},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/AlbertDDKSZW07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ApostolicoT07,
author = {Alberto Apostolico and
Claudia Tagliacollo},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {Incremental Discovery of Irredundant Motif Bases in Time \emph{O}({\(\vert\)}\emph{Sigma}{\(\vert\)}
\emph{n}\({}^{\mbox{2}}\) log \emph{n})},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {136--148},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_13},
doi = {10.1007/978-3-540-74126-8\_13},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ApostolicoT07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BansalE07,
author = {Mukul S. Bansal and
Oliver Eulenstein},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {An \emph{Omega}(\emph{n}\({}^{\mbox{2}}\)/log \emph{n}) Speed-Up of
{TBR} Heuristics for the Gene-Duplication Problem},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {124--135},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_12},
doi = {10.1007/978-3-540-74126-8\_12},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BansalE07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BirinGET07,
author = {Hadas Birin and
Zohar Gal{-}Or and
Isaac Elias and
Tamir Tuller},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {Inferring Models of Rearrangements, Recombinations, and Horizontal
Transfers by the Minimum Evolution Criterion},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {111--123},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_11},
doi = {10.1007/978-3-540-74126-8\_11},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BirinGET07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BoucherBC07,
author = {Christina Boucher and
Daniel G. Brown and
Paul Church},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {A Graph Clustering Approach to Weak Motif Recognition},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {149--160},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_14},
doi = {10.1007/978-3-540-74126-8\_14},
timestamp = {Mon, 10 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BoucherBC07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Bucan07,
author = {Maja Bucan},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {Novel Approaches in Psychiatric Genomics},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {371},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_34},
doi = {10.1007/978-3-540-74126-8\_34},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Bucan07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ChinLSY07,
author = {Francis Y. L. Chin and
Henry C. M. Leung and
Wing{-}Kin Sung and
Siu{-}Ming Yiu},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {The Point Placement Problem on a Line - Improved Bounds for Pairwise
Distance Queries},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {372--382},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_35},
doi = {10.1007/978-3-540-74126-8\_35},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ChinLSY07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ChoiZZS07,
author = {Vicky Choi and
Chunfang Zheng and
Qian Zhu and
David Sankoff},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {Algorithms for the Extraction of Synteny Blocks from Comparative Maps},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {277--288},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_26},
doi = {10.1007/978-3-540-74126-8\_26},
timestamp = {Sat, 26 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/ChoiZZS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/DavilaBR07,
author = {Jaime I. D{\'{a}}vila and
Sudha Balla and
Sanguthevar Rajasekaran},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {Fast Algorithms for Selecting Specific siRNA in Complete mRNA Data},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {302--309},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_28},
doi = {10.1007/978-3-540-74126-8\_28},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/DavilaBR07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/DhanikYMPKLBL07,
author = {Ankur Dhanik and
Peggy Yao and
Nathan Marz and
Ryan Propper and
Charles Kou and
Guanfeng Liu and
Henry van den Bedem and
Jean{-}Claude Latombe},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {Efficient Algorithms to Explore Conformation Spaces of Flexible Protein
Loops},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {265--276},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_25},
doi = {10.1007/978-3-540-74126-8\_25},
timestamp = {Thu, 07 Nov 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/DhanikYMPKLBL07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/DundasBDL07,
author = {Joe Dundas and
T. Andrew Binkowski and
Bhaskar DasGupta and
Jie Liang},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {Topology Independent Protein Structural Alignment},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {171--182},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_16},
doi = {10.1007/978-3-540-74126-8\_16},
timestamp = {Thu, 25 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/DundasBDL07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/GenoveseGP07,
author = {Loredana M. Genovese and
Filippo Geraci and
Marco Pellegrini},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {A Fast and Accurate Heuristic for the Single Individual {SNP} Haplotyping
Problem with Many Gaps, High Reading Error Rate and Low Coverage},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {49--60},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_6},
doi = {10.1007/978-3-540-74126-8\_6},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/GenoveseGP07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/HeathP07,
author = {Lenwood S. Heath and
Amrita Pati},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {Genomic Signatures in De Bruijn Chains},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {216--227},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_21},
doi = {10.1007/978-3-540-74126-8\_21},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/HeathP07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/IlieI07,
author = {Lucian Ilie and
Silvana Ilie},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {Fast Computation of Good Multiple Spaced Seeds},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {346--358},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_32},
doi = {10.1007/978-3-540-74126-8\_32},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/IlieI07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/JabbariCPPZ07,
author = {Hosna Jabbari and
Anne Condon and
Ana Pop and
Cristina Pop and
Yinglei Zhao},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {HFold: {RNA} Pseudoknotted Secondary Structure Prediction Using Hierarchical
Folding},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {323--334},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_30},
doi = {10.1007/978-3-540-74126-8\_30},
timestamp = {Mon, 01 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/JabbariCPPZ07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/JeongBP07,
author = {Jieun K. Jeong and
Piotr Berman and
Teresa M. Przytycka},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {Bringing Folding Pathways into Strand Pairing Prediction},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {38--48},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_5},
doi = {10.1007/978-3-540-74126-8\_5},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/JeongBP07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/KennedyMP07,
author = {Justin Kennedy and
Ion I. Mandoiu and
Bogdan Pasaniuc},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {Genotype Error Detection Using Hidden Markov Models of Haplotype Diversity},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {73--84},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_8},
doi = {10.1007/978-3-540-74126-8\_8},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/KennedyMP07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/KimK07,
author = {Eagu Kim and
John D. Kececioglu},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {Inverse Sequence Alignment from Partial Examples},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {359--370},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_33},
doi = {10.1007/978-3-540-74126-8\_33},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/KimK07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/KohTHT07,
author = {Geoffrey Koh and
Lisa Tucker{-}Kellogg and
David Hsu and
P. S. Thiagarajan},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {Composing Globally Consistent Pathway Parameter Estimates Through
Belief Propagation},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {420--430},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_39},
doi = {10.1007/978-3-540-74126-8\_39},
timestamp = {Wed, 25 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/KohTHT07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/KuksaP07,
author = {Pavel P. Kuksa and
Vladimir Pavlovic},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {Fast Kernel Methods for {SVM} Sequence Classifiers},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {228--239},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_22},
doi = {10.1007/978-3-540-74126-8\_22},
timestamp = {Tue, 11 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/KuksaP07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/LangmeadJ07,
author = {Christopher James Langmead and
Sumit Kumar Jha},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {Predicting Protein Folding Kinetics Via Temporal Logic Model Checking},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {252--264},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_24},
doi = {10.1007/978-3-540-74126-8\_24},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/LangmeadJ07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/LeeS07,
author = {Phil Hyoun Lee and
Hagit Shatkay},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {Two Birds, One Stone: Selecting Functionally Informative Tag SNPs
for Disease Association Studies},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {61--72},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_7},
doi = {10.1007/978-3-540-74126-8\_7},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/LeeS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/LiuSS07,
author = {Chunmei Liu and
Yinglei Song and
Louis W. Shapiro},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {{RNA} Folding Including Pseudoknots: {A} New Parameterized Algorithm
and Improved Upper Bound},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {310--322},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_29},
doi = {10.1007/978-3-540-74126-8\_29},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/LiuSS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/LozanoPRVZ07,
author = {Antoni Lozano and
Ron Y. Pinter and
Oleg Rokhlenko and
Gabriel Valiente and
Michal Ziv{-}Ukelson},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {Seeded Tree Alignment and Planar Tanglegram Layout},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {98--110},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_10},
doi = {10.1007/978-3-540-74126-8\_10},
timestamp = {Sat, 16 Sep 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/LozanoPRVZ07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MedvedevGMB07,
author = {Paul Medvedev and
Konstantinos Georgiou and
Gene Myers and
Michael Brudno},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {Computability of Models for Sequence Assembly},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {289--301},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_27},
doi = {10.1007/978-3-540-74126-8\_27},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/MedvedevGMB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MosigCS07,
author = {Axel Mosig and
Julian J.{-}L. Chen and
Peter F. Stadler},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {Homology Search with Fragmented Nucleic Acid Sequence Patterns},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {335--345},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_31},
doi = {10.1007/978-3-540-74126-8\_31},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/MosigCS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/NicosiaS07,
author = {Giuseppe Nicosia and
Giovanni Stracquadanio},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {Generalized Pattern Search and Mesh Adaptive Direct Search Algorithms
for Protein Structure Prediction},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {183--193},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_17},
doi = {10.1007/978-3-540-74126-8\_17},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/NicosiaS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/OzerR07,
author = {Hatice Gulcin Ozer and
William C. Ray},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {Informative Motifs in Protein Family Alignments},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {161--170},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_15},
doi = {10.1007/978-3-540-74126-8\_15},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/OzerR07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/PerteaS07,
author = {Mihaela Pertea and
Steven Salzberg},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {Using Protein Domains to Improve the Accuracy of \emph{Ab Initio}
Gene Finding},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {208--215},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_20},
doi = {10.1007/978-3-540-74126-8\_20},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/PerteaS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Pevzner07,
author = {Pavel A. Pevzner},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {Shotgun Protein Sequencing},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {1},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_1},
doi = {10.1007/978-3-540-74126-8\_1},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Pevzner07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/RastasU07,
author = {Pasi Rastas and
Esko Ukkonen},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {Haplotype Inference Via Hierarchical Genotype Parsing},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {85--97},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_9},
doi = {10.1007/978-3-540-74126-8\_9},
timestamp = {Sat, 16 Sep 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/RastasU07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SchliepK07,
author = {Alexander Schliep and
Roland Krause},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {Efficient Computational Design of Tiling Arrays Using a Shortest Path
Approach},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {383--394},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_36},
doi = {10.1007/978-3-540-74126-8\_36},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SchliepK07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SramekBV07,
author = {Rastislav Sr{\'{a}}mek and
Brona Brejov{\'{a}} and
Tom{\'{a}}s Vinar},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {On-Line Viterbi Algorithm for Analysis of Long Biological Sequences},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {240--251},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_23},
doi = {10.1007/978-3-540-74126-8\_23},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SramekBV07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/TsivtsivadzeBS07,
author = {Evgeni Tsivtsivadze and
Jorma Boberg and
Tapio Salakoski},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {Locality Kernels for Protein Classification},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {2--11},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_2},
doi = {10.1007/978-3-540-74126-8\_2},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/TsivtsivadzeBS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/VarshavskyFML07,
author = {Roy Varshavsky and
Menachem Fromer and
Amit Man and
Michal Linial},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {When Less Is More: Improving Classification of Protein Families with
a Minimal Set of Global Features},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {12--24},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_3},
doi = {10.1007/978-3-540-74126-8\_3},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/VarshavskyFML07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/VassuraMLMFC07,
author = {Marco Vassura and
Luciano Margara and
Pietro di Lena and
Filippo Medri and
Piero Fariselli and
Rita Casadio},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {Fault Tolerance for Large Scale Protein 3D Reconstruction from Contact
Maps},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {25--37},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_4},
doi = {10.1007/978-3-540-74126-8\_4},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/VassuraMLMFC07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/WangS07,
author = {Xueyi Wang and
Jack Snoeyink},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {Defining and Computing Optimum {RMSD} for Gapped Multiple Structure
Alignment},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {196--207},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_19},
doi = {10.1007/978-3-540-74126-8\_19},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/WangS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/WuBCL07,
author = {Yonghui Wu and
Prasanna Bhat and
Timothy J. Close and
Stefano Lonardi},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {Efficient and Accurate Construction of Genetic Linkage Maps from Noisy
and Missing Genotyping Data},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {395--406},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_37},
doi = {10.1007/978-3-540-74126-8\_37},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/WuBCL07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ZhiSB07,
author = {Degui Zhi and
Maxim Shatsky and
Steven E. Brenner},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {Alignment-Free Local Structural Search by Writhe Decomposition},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {194--195},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_18},
doi = {10.1007/978-3-540-74126-8\_18},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ZhiSB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/wabi/2007,
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8},
doi = {10.1007/978-3-540-74126-8},
isbn = {978-3-540-74125-1},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/2007.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BergeronMS06,
author = {Anne Bergeron and
Julia Mixtacki and
Jens Stoye},
editor = {Philipp Bucher and
Bernard M. E. Moret},
title = {A Unifying View of Genome Rearrangements},
booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006,
Zurich, Switzerland, September 11-13, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4175},
pages = {163--173},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11851561\_16},
doi = {10.1007/11851561\_16},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/BergeronMS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BlumV06,
author = {Christian Blum and
Mateu Y{\'{a}}bar Vall{\`{e}}s},
editor = {Philipp Bucher and
Bernard M. E. Moret},
title = {New Constructive Heuristics for {DNA} Sequencing by Hybridization},
booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006,
Zurich, Switzerland, September 11-13, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4175},
pages = {355--365},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11851561\_33},
doi = {10.1007/11851561\_33},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BlumV06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BockerLLP06,
author = {Sebastian B{\"{o}}cker and
Matthias C. Letzel and
Zsuzsanna Lipt{\'{a}}k and
Anton Pervukhin},
editor = {Philipp Bucher and
Bernard M. E. Moret},
title = {Decomposing Metabolomic Isotope Patterns},
booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006,
Zurich, Switzerland, September 11-13, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4175},
pages = {12--23},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11851561\_2},
doi = {10.1007/11851561\_2},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BockerLLP06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BrinzaZ06,
author = {Dumitru Brinza and
Alexander Zelikovsky},
editor = {Philipp Bucher and
Bernard M. E. Moret},
title = {Combinatorial Methods for Disease Association Search and Susceptibility
Prediction},
booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006,
Zurich, Switzerland, September 11-13, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4175},
pages = {286--297},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11851561\_27},
doi = {10.1007/11851561\_27},
timestamp = {Wed, 25 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BrinzaZ06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BurgerN06,
author = {Lukas Burger and
Erik van Nimwegen},
editor = {Philipp Bucher and
Bernard M. E. Moret},
title = {A Bayesian Algorithm for Reconstructing Two-Component Signaling Networks},
booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006,
Zurich, Switzerland, September 11-13, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4175},
pages = {44--55},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11851561\_5},
doi = {10.1007/11851561\_5},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/BurgerN06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/CarvalhoR06,
author = {S{\'{e}}rgio A. de Carvalho and
Sven Rahmann},
editor = {Philipp Bucher and
Bernard M. E. Moret},
title = {Improving the Layout of Oligonucleotide Microarrays: Pivot Partitioning},
booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006,
Zurich, Switzerland, September 11-13, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4175},
pages = {321--332},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11851561\_30},
doi = {10.1007/11851561\_30},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/CarvalhoR06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ChanCCFK06,
author = {Bethany Man{-}Yee Chan and
Joseph Wun{-}Tat Chan and
Francis Y. L. Chin and
Stanley P. Y. Fung and
Ming{-}Yang Kao},
editor = {Philipp Bucher and
Bernard M. E. Moret},
title = {Linear-Time Haplotype Inference on Pedigrees Without Recombinations},
booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006,
Zurich, Switzerland, September 11-13, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4175},
pages = {56--67},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11851561\_6},
doi = {10.1007/11851561\_6},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ChanCCFK06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/CsurosCGHL06,
author = {Mikl{\'{o}}s Cs{\"{u}}r{\"{o}}s and
Ming{-}Te Cheng and
Andreas Grimm and
Amine Halawani and
Perrine Landreau},
editor = {Philipp Bucher and
Bernard M. E. Moret},
title = {Segmentation with an Isochore Distribution},
booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006,
Zurich, Switzerland, September 11-13, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4175},
pages = {388--399},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11851561\_36},
doi = {10.1007/11851561\_36},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/CsurosCGHL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/DarlingTZKMP06,
author = {Aaron E. Darling and
Todd J. Treangen and
Louxin Zhang and
Carla Kuiken and
Xavier Messeguer and
Nicole T. Perna},
editor = {Philipp Bucher and
Bernard M. E. Moret},
title = {Procrastination Leads to Efficient Filtration for Local Multiple Alignment},
booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006,
Zurich, Switzerland, September 11-13, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4175},
pages = {126--137},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11851561\_12},
doi = {10.1007/11851561\_12},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/DarlingTZKMP06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/FribergGBSG06,
author = {Markus T. Friberg and
Pedro Gonnet and
Yves Barral and
Nicol N. Schraudolph and
Gaston H. Gonnet},
editor = {Philipp Bucher and
Bernard M. E. Moret},
title = {Measures of Codon Bias in Yeast, the tRNA Pairing Index and Possible
{DNA} Repair Mechanisms},
booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006,
Zurich, Switzerland, September 11-13, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4175},
pages = {1--11},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11851561\_1},
doi = {10.1007/11851561\_1},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/FribergGBSG06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/GrammHNST06,
author = {Jens Gramm and
Tzvika Hartman and
Till Nierhoff and
Roded Sharan and
Till Tantau},
editor = {Philipp Bucher and
Bernard M. E. Moret},
title = {On the Complexity of {SNP} Block Partitioning Under the Perfect Phylogeny
Model},
booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006,
Zurich, Switzerland, September 11-13, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4175},
pages = {92--102},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11851561\_9},
doi = {10.1007/11851561\_9},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/GrammHNST06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/HollandCHM06,
author = {Barbara R. Holland and
Glenn Conner and
Katharina T. Huber and
Vincent Moulton},
editor = {Philipp Bucher and
Bernard M. E. Moret},
title = {Imputing Supertrees and Supernetworks from Quartets},
booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006,
Zurich, Switzerland, September 11-13, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4175},
pages = {162},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11851561\_15},
doi = {10.1007/11851561\_15},
timestamp = {Tue, 19 Nov 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/HollandCHM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/HongL06,
author = {Eun{-}Jong Hong and
Tom{\'{a}}s Lozano{-}P{\'{e}}rez},
editor = {Philipp Bucher and
Bernard M. E. Moret},
title = {Protein Side-Chain Placement Through {MAP} Estimation and Problem-Size
Reduction},
booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006,
Zurich, Switzerland, September 11-13, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4175},
pages = {219--230},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11851561\_21},
doi = {10.1007/11851561\_21},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/HongL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/HouBZM06,
author = {Minmei Hou and
Piotr Berman and
Louxin Zhang and
Webb Miller},
editor = {Philipp Bucher and
Bernard M. E. Moret},
title = {Controlling Size When Aligning Multiple Genomic Sequences with Duplications},
booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006,
Zurich, Switzerland, September 11-13, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4175},
pages = {138--149},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11851561\_13},
doi = {10.1007/11851561\_13},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/HouBZM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/HusonSW06,
author = {Daniel H. Huson and
Mike A. Steel and
Jim Whitfield},
editor = {Philipp Bucher and
Bernard M. E. Moret},
title = {Reducing Distortion in Phylogenetic Networks},
booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006,
Zurich, Switzerland, September 11-13, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4175},
pages = {150--161},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11851561\_14},
doi = {10.1007/11851561\_14},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/HusonSW06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/IerselKKS06,
author = {Leo van Iersel and
Judith Keijsper and
Steven Kelk and
Leen Stougie},
editor = {Philipp Bucher and
Bernard M. E. Moret},
title = {Beaches of Islands of Tractability: Algorithms for Parsimony and Minimum
Perfect Phylogeny Haplotyping Problems},
booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006,
Zurich, Switzerland, September 11-13, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4175},
pages = {80--91},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11851561\_8},
doi = {10.1007/11851561\_8},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/IerselKKS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/JenkinsLH06,
author = {Paul A. Jenkins and
Rune B. Lyngs{\o} and
Jotun Hein},
editor = {Philipp Bucher and
Bernard M. E. Moret},
title = {How Many Transcripts Does It Take to Reconstruct the Splice Graph?},
booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006,
Zurich, Switzerland, September 11-13, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4175},
pages = {103--114},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11851561\_10},
doi = {10.1007/11851561\_10},
timestamp = {Thu, 23 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/JenkinsLH06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/LiL06,
author = {Shuai Cheng Li and
Ming Li},
editor = {Philipp Bucher and
Bernard M. E. Moret},
title = {On the Complexity of the Crossing Contact Map Pattern Matching Problem},
booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006,
Zurich, Switzerland, September 11-13, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4175},
pages = {231--241},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11851561\_22},
doi = {10.1007/11851561\_22},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/LiL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/LukszaKOKG06,
author = {Marta Luksza and
Boguslaw Kluge and
Jerzy Ostrowski and
Jakub Karczmarski and
Anna Gambin},
editor = {Philipp Bucher and
Bernard M. E. Moret},
title = {Efficient Model-Based Clustering for {LC-MS} Data},
booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006,
Zurich, Switzerland, September 11-13, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4175},
pages = {32--43},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11851561\_4},
doi = {10.1007/11851561\_4},
timestamp = {Mon, 05 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/LukszaKOKG06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MiklosPL06,
author = {Istv{\'{a}}n Mikl{\'{o}}s and
Timothy Brooks Paige and
P{\'{e}}ter Ligeti},
editor = {Philipp Bucher and
Bernard M. E. Moret},
title = {Efficient Sampling of Transpositions and Inverted Transpositions for
Bayesian {MCMC}},
booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006,
Zurich, Switzerland, September 11-13, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4175},
pages = {174--185},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11851561\_17},
doi = {10.1007/11851561\_17},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/MiklosPL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Parida06,
author = {Laxmi Parida},
editor = {Philipp Bucher and
Bernard M. E. Moret},
title = {Gapped Permutation Patterns for Comparative Genomics},
booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006,
Zurich, Switzerland, September 11-13, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4175},
pages = {376--387},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11851561\_35},
doi = {10.1007/11851561\_35},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Parida06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/PhillipsRA06,
author = {Jeff M. Phillips and
Johannes Rudolph and
Pankaj K. Agarwal},
editor = {Philipp Bucher and
Bernard M. E. Moret},
title = {Segmenting Motifs in Protein-Protein Interface Surfaces},
booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006,
Zurich, Switzerland, September 11-13, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4175},
pages = {207--218},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11851561\_20},
doi = {10.1007/11851561\_20},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/PhillipsRA06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/RahmannK06,
author = {Sven Rahmann and
Gunnar W. Klau},
editor = {Philipp Bucher and
Bernard M. E. Moret},
title = {Integer Linear Programs for Discovering Approximate Gene Clusters},
booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006,
Zurich, Switzerland, September 11-13, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4175},
pages = {298--309},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11851561\_28},
doi = {10.1007/11851561\_28},
timestamp = {Mon, 05 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/RahmannK06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/RokhlenkoSSRP06,
author = {Oleg Rokhlenko and
Tomer Shlomi and
Roded Sharan and
Eytan Ruppin and
Ron Y. Pinter},
editor = {Philipp Bucher and
Bernard M. E. Moret},
title = {Flux-Based \emph{vs.} Topology-Based Similarity of Metabolic Genes},
booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006,
Zurich, Switzerland, September 11-13, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4175},
pages = {274--285},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11851561\_26},
doi = {10.1007/11851561\_26},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/RokhlenkoSSRP06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SandveNSEAD06,
author = {Geir Kjetil Sandve and
Magnar Nedland and
{\O}yvind B{\o} Syrstad and
Lars Andreas Eidsheim and
Osman Abul and
Finn Drabl{\o}s},
editor = {Philipp Bucher and
Bernard M. E. Moret},
title = {Accelerating Motif Discovery: Motif Matching on Parallel Hardware},
booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006,
Zurich, Switzerland, September 11-13, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4175},
pages = {197--206},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11851561\_19},
doi = {10.1007/11851561\_19},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/SandveNSEAD06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SongD06,
author = {Dandan Song and
Zhidong Deng},
editor = {Philipp Bucher and
Bernard M. E. Moret},
title = {A Fuzzy Dynamic Programming Approach to Predict {RNA} Secondary Structure},
booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006,
Zurich, Switzerland, September 11-13, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4175},
pages = {242--251},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11851561\_23},
doi = {10.1007/11851561\_23},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SongD06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SongLMC06,
author = {Yinglei Song and
Chunmei Liu and
Russell L. Malmberg and
Liming Cai},
editor = {Philipp Bucher and
Bernard M. E. Moret},
title = {Phylogenetic Network Inferences Through Efficient Haplotyping},
booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006,
Zurich, Switzerland, September 11-13, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4175},
pages = {68--79},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11851561\_7},
doi = {10.1007/11851561\_7},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SongLMC06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SteinhofelSA06,
author = {Kathleen Steinh{\"{o}}fel and
Alexandros Skaliotis and
Andreas Alexander Albrecht},
editor = {Philipp Bucher and
Bernard M. E. Moret},
title = {Landscape Analysis for Protein-Folding Simulation in the {H-P} Model},
booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006,
Zurich, Switzerland, September 11-13, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4175},
pages = {252--261},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11851561\_24},
doi = {10.1007/11851561\_24},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SteinhofelSA06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/StojanovicB06,
author = {Nikola Stojanovic and
Piotr Berman},
editor = {Philipp Bucher and
Bernard M. E. Moret},
title = {A Linear-Time Algorithm for Studying Genetic Variation},
booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006,
Zurich, Switzerland, September 11-13, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4175},
pages = {344--354},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11851561\_32},
doi = {10.1007/11851561\_32},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/StojanovicB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/TerzerS06,
author = {Marco Terzer and
J{\"{o}}rg Stelling},
editor = {Philipp Bucher and
Bernard M. E. Moret},
title = {Accelerating the Computation of Elementary Modes Using Pattern Trees},
booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006,
Zurich, Switzerland, September 11-13, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4175},
pages = {333--343},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11851561\_31},
doi = {10.1007/11851561\_31},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/TerzerS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Tsur06,
author = {Dekel Tsur},
editor = {Philipp Bucher and
Bernard M. E. Moret},
title = {Optimal Probing Patterns for Sequencing by Hybridization},
booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006,
Zurich, Switzerland, September 11-13, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4175},
pages = {366--375},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11851561\_34},
doi = {10.1007/11851561\_34},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Tsur06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/VellozoAL06,
author = {Augusto F. Vellozo and
Carlos E. R. Alves and
Alair Pereira do Lago},
editor = {Philipp Bucher and
Bernard M. E. Moret},
title = {Alignment with Non-overlapping Inversions in \emph{O}(\emph{n}\({}^{\mbox{3}}\))-Time},
booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006,
Zurich, Switzerland, September 11-13, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4175},
pages = {186--196},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11851561\_18},
doi = {10.1007/11851561\_18},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/VellozoAL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/WangLL06,
author = {Lusheng Wang and
Yu Lin and
Xiaowen Liu},
editor = {Philipp Bucher and
Bernard M. E. Moret},
title = {Approximation Algorithms for Bi-clustering Problems},
booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006,
Zurich, Switzerland, September 11-13, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4175},
pages = {310--320},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11851561\_29},
doi = {10.1007/11851561\_29},
timestamp = {Sat, 09 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/WangLL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/YeIJI06,
author = {Jieping Ye and
Ivaylo Ilinkin and
Ravi Janardan and
Adam Isom},
editor = {Philipp Bucher and
Bernard M. E. Moret},
title = {Multiple Structure Alignment and Consensus Identification for Proteins},
booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006,
Zurich, Switzerland, September 11-13, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4175},
pages = {115--125},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11851561\_11},
doi = {10.1007/11851561\_11},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/YeIJI06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ZhaoMC06,
author = {Jizhen Zhao and
Russell L. Malmberg and
Liming Cai},
editor = {Philipp Bucher and
Bernard M. E. Moret},
title = {Rapid \emph{ab initio} {RNA} Folding Including Pseudoknots Via Graph
Tree Decomposition},
booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006,
Zurich, Switzerland, September 11-13, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4175},
pages = {262--273},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11851561\_25},
doi = {10.1007/11851561\_25},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ZhaoMC06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ZhuWYS06,
author = {Hongmei Zhu and
Jiaxin Wang and
Zehong Yang and
Yixu Song},
editor = {Philipp Bucher and
Bernard M. E. Moret},
title = {A Method to Design Standard HMMs with Desired Length Distribution
for Biological Sequence Analysis},
booktitle = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006,
Zurich, Switzerland, September 11-13, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4175},
pages = {24--31},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11851561\_3},
doi = {10.1007/11851561\_3},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ZhuWYS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/wabi/2006,
editor = {Philipp Bucher and
Bernard M. E. Moret},
title = {Algorithms in Bioinformatics, 6th International Workshop, {WABI} 2006,
Zurich, Switzerland, September 11-13, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4175},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11851561},
doi = {10.1007/11851561},
isbn = {3-540-39583-0},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/2006.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/AgarwalBK05,
author = {Pankaj K. Agarwal and
Yonatan Bilu and
Rachel Kolodny},
editor = {Rita Casadio and
Gene Myers},
title = {Faster Algorithms for Optimal Multiple Sequence Alignment Based on
Pairwise Comparisons},
booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005,
Mallorca, Spain, October 3-6, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3692},
pages = {315--327},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11557067\_26},
doi = {10.1007/11557067\_26},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/AgarwalBK05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BauerKR05,
author = {Markus Bauer and
Gunnar W. Klau and
Knut Reinert},
editor = {Rita Casadio and
Gene Myers},
title = {Multiple Structural {RNA} Alignment with Lagrangian Relaxation},
booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005,
Mallorca, Spain, October 3-6, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3692},
pages = {303--314},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11557067\_25},
doi = {10.1007/11557067\_25},
timestamp = {Tue, 26 Mar 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/BauerKR05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BerardBCP05,
author = {S{\`{e}}verine B{\'{e}}rard and
Anne Bergeron and
C{\'{e}}dric Chauve and
Christophe Paul},
editor = {Rita Casadio and
Gene Myers},
title = {Perfect Sorting by Reversals Is Not Always Difficult},
booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005,
Mallorca, Spain, October 3-6, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3692},
pages = {228--238},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11557067\_19},
doi = {10.1007/11557067\_19},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BerardBCP05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BoyerHN05,
author = {Robert S. Boyer and
Warren A. Hunt Jr. and
Serita M. Nelesen},
editor = {Rita Casadio and
Gene Myers},
title = {A Compressed Format for Collections of Phylogenetic Trees and Improved
Consensus Performance},
booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005,
Mallorca, Spain, October 3-6, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3692},
pages = {353--364},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11557067\_29},
doi = {10.1007/11557067\_29},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BoyerHN05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Brehelin05,
author = {Laurent Br{\'{e}}h{\'{e}}lin},
editor = {Rita Casadio and
Gene Myers},
title = {Clustering Gene Expression Series with Prior Knowledge},
booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005,
Mallorca, Spain, October 3-6, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3692},
pages = {27--38},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11557067\_3},
doi = {10.1007/11557067\_3},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Brehelin05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ChristiansenMPR05,
author = {Chris Christiansen and
Thomas Mailund and
Christian N. S. Pedersen and
Martin Randers},
editor = {Rita Casadio and
Gene Myers},
title = {Computing the Quartet Distance Between Trees of Arbitrary Degree},
booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005,
Mallorca, Spain, October 3-6, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3692},
pages = {77--88},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11557067\_7},
doi = {10.1007/11557067\_7},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ChristiansenMPR05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/CilibrasiIKT05,
author = {Rudi Cilibrasi and
Leo van Iersel and
Steven Kelk and
John Tromp},
editor = {Rita Casadio and
Gene Myers},
title = {On the Complexity of Several Haplotyping Problems},
booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005,
Mallorca, Spain, October 3-6, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3692},
pages = {128--139},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11557067\_11},
doi = {10.1007/11557067\_11},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/CilibrasiIKT05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/DaleviD05,
author = {Daniel Dalevi and
Devdatt P. Dubhashi},
editor = {Rita Casadio and
Gene Myers},
title = {The Peres-Shields Order Estimator for Fixed and Variable Length Markov
Models with Applications to {DNA} Sequence Similarity},
booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005,
Mallorca, Spain, October 3-6, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3692},
pages = {291--302},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11557067\_24},
doi = {10.1007/11557067\_24},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/DaleviD05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/EliasH05,
author = {Isaac Elias and
Tzvika Hartman},
editor = {Rita Casadio and
Gene Myers},
title = {A 1.375-Approximation Algorithm for Sorting by Transpositions},
booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005,
Mallorca, Spain, October 3-6, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3692},
pages = {204--215},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11557067\_17},
doi = {10.1007/11557067\_17},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/EliasH05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/EyalH05,
author = {Eran Eyal and
Dan Halperin},
editor = {Rita Casadio and
Gene Myers},
title = {Improved Maintenance of Molecular Surfaces Using Dynamic Graph Connectivity},
booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005,
Mallorca, Spain, October 3-6, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3692},
pages = {401--413},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11557067\_33},
doi = {10.1007/11557067\_33},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/EyalH05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/GanapathyGJRW05,
author = {Ganeshkumar Ganapathy and
Barbara Goodson and
Robert K. Jansen and
Vijaya Ramachandran and
Tandy J. Warnow},
editor = {Rita Casadio and
Gene Myers},
title = {Pattern Identification in Biogeography},
booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005,
Mallorca, Spain, October 3-6, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3692},
pages = {116--127},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11557067\_10},
doi = {10.1007/11557067\_10},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/GanapathyGJRW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Kister05,
author = {Alexander Kister},
editor = {Rita Casadio and
Gene Myers},
title = {The Main Structural Regularities of the Sandwich Proteins},
booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005,
Mallorca, Spain, October 3-6, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3692},
pages = {414--422},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11557067\_34},
doi = {10.1007/11557067\_34},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Kister05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/KucherovNR05,
author = {Gregory Kucherov and
Laurent No{\'{e}} and
Mikhail A. Roytberg},
editor = {Rita Casadio and
Gene Myers},
title = {A Unifying Framework for Seed Sensitivity and Its Application to Subset
Seeds},
booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005,
Mallorca, Spain, October 3-6, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3692},
pages = {251--263},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11557067\_21},
doi = {10.1007/11557067\_21},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/KucherovNR05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Labarre05,
author = {Anthony Labarre},
editor = {Rita Casadio and
Gene Myers},
title = {A New Tight Upper Bound on the Transposition Distance},
booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005,
Mallorca, Spain, October 3-6, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3692},
pages = {216--227},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11557067\_18},
doi = {10.1007/11557067\_18},
timestamp = {Mon, 05 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Labarre05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/LacroixFS05,
author = {Vincent Lacroix and
Cristina G. Fernandes and
Marie{-}France Sagot},
editor = {Rita Casadio and
Gene Myers},
title = {Reaction Motifs in Metabolic Networks},
booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005,
Mallorca, Spain, October 3-6, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3692},
pages = {178--191},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11557067\_15},
doi = {10.1007/11557067\_15},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/LacroixFS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/LaskerDNW05,
author = {Keren Lasker and
Oranit Dror and
Ruth Nussinov and
Haim J. Wolfson},
editor = {Rita Casadio and
Gene Myers},
title = {Discovery of Protein Substructures in {EM} Maps},
booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005,
Mallorca, Spain, October 3-6, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3692},
pages = {423--434},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11557067\_35},
doi = {10.1007/11557067\_35},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/LaskerDNW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Leaver-FayKS05,
author = {Andrew Leaver{-}Fay and
Brian Kuhlman and
Jack Snoeyink},
editor = {Rita Casadio and
Gene Myers},
title = {Rotamer-Pair Energy Calculations Using a Trie Data Structure},
booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005,
Mallorca, Spain, October 3-6, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3692},
pages = {389--400},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11557067\_32},
doi = {10.1007/11557067\_32},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/Leaver-FayKS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/LeungC05,
author = {Henry C. M. Leung and
Francis Y. L. Chin},
editor = {Rita Casadio and
Gene Myers},
title = {Generalized Planted (\emph{l}, \emph{d})-Motif Problem with Negative
Set},
booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005,
Mallorca, Spain, October 3-6, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3692},
pages = {264--275},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11557067\_22},
doi = {10.1007/11557067\_22},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/LeungC05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/LyngsoSH05,
author = {Rune B. Lyngs{\o} and
Yun S. Song and
Jotun Hein},
editor = {Rita Casadio and
Gene Myers},
title = {Minimum Recombination Histories by Branch and Bound},
booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005,
Mallorca, Spain, October 3-6, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3692},
pages = {239--250},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11557067\_20},
doi = {10.1007/11557067\_20},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/LyngsoSH05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MadeiraO05,
author = {Sara C. Madeira and
Arlindo L. Oliveira},
editor = {Rita Casadio and
Gene Myers},
title = {A Linear Time Biclustering Algorithm for Time Series Gene Expression
Data},
booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005,
Mallorca, Spain, October 3-6, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3692},
pages = {39--52},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11557067\_4},
doi = {10.1007/11557067\_4},
timestamp = {Sat, 24 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/MadeiraO05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MoranRS05,
author = {Shlomo Moran and
Satish Rao and
Sagi Snir},
editor = {Rita Casadio and
Gene Myers},
title = {Using Semi-definite Programming to Enhance Supertree Resolvability},
booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005,
Mallorca, Spain, October 3-6, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3692},
pages = {89--103},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11557067\_8},
doi = {10.1007/11557067\_8},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/MoranRS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/PengT05,
author = {Zeshan Peng and
H. F. Ting},
editor = {Rita Casadio and
Gene Myers},
title = {An Efficient Reduction from Constrained to Unconstrained Maximum Agreement
Subtree},
booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005,
Mallorca, Spain, October 3-6, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3692},
pages = {104--115},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11557067\_9},
doi = {10.1007/11557067\_9},
timestamp = {Wed, 11 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/PengT05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/RastasKMU05,
author = {Pasi Rastas and
Mikko Koivisto and
Heikki Mannila and
Esko Ukkonen},
editor = {Rita Casadio and
Gene Myers},
title = {A Hidden Markov Technique for Haplotype Reconstruction},
booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005,
Mallorca, Spain, October 3-6, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3692},
pages = {140--151},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11557067\_12},
doi = {10.1007/11557067\_12},
timestamp = {Sat, 16 Sep 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/RastasKMU05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/RastegariC05,
author = {Baharak Rastegari and
Anne Condon},
editor = {Rita Casadio and
Gene Myers},
title = {Linear Time Algorithm for Parsing {RNA} Secondary Structure},
booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005,
Mallorca, Spain, October 3-6, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3692},
pages = {341--352},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11557067\_28},
doi = {10.1007/11557067\_28},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/RastegariC05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SammethWHS05,
author = {Michael Sammeth and
Thomas Weniger and
Dag Harmsen and
Jens Stoye},
editor = {Rita Casadio and
Gene Myers},
title = {Alignment of Tandem Repeats with Excision, Duplication, Substitution
and Indels {(EDSI)}},
booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005,
Mallorca, Spain, October 3-6, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3692},
pages = {276--290},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11557067\_23},
doi = {10.1007/11557067\_23},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/SammethWHS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SongLHMXC05,
author = {Yinglei Song and
Chunmei Liu and
Xiuzhen Huang and
Russell L. Malmberg and
Ying Xu and
Liming Cai},
editor = {Rita Casadio and
Gene Myers},
title = {Efficient Parameterized Algorithm for Biopolymer Structure-Sequence
Alignment},
booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005,
Mallorca, Spain, October 3-6, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3692},
pages = {376--388},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11557067\_31},
doi = {10.1007/11557067\_31},
timestamp = {Thu, 08 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SongLHMXC05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SongWG05,
author = {Yun S. Song and
Yufeng Wu and
Dan Gusfield},
editor = {Rita Casadio and
Gene Myers},
title = {Algorithms for Imperfect Phylogeny Haplotyping {(IPPH)} with a Single
Homoplasy or Recombination Event},
booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005,
Mallorca, Spain, October 3-6, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3692},
pages = {152--164},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11557067\_13},
doi = {10.1007/11557067\_13},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SongWG05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SpeerSZ05,
author = {Nora Speer and
Christian Spieth and
Andreas Zell},
editor = {Rita Casadio and
Gene Myers},
title = {Spectral Clustering Gene Ontology Terms to Group Genes by Function},
booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005,
Mallorca, Spain, October 3-6, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3692},
pages = {1--12},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11557067\_1},
doi = {10.1007/11557067\_1},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SpeerSZ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/TuckerM05,
author = {Warwick Tucker and
Vincent Moulton},
editor = {Rita Casadio and
Gene Myers},
title = {Reconstructing Metabolic Networks Using Interval Analysis},
booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005,
Mallorca, Spain, October 3-6, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3692},
pages = {192--203},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11557067\_16},
doi = {10.1007/11557067\_16},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/TuckerM05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/TullerOMCC05,
author = {Tamir Tuller and
Efrat Oron and
Erez Makavy and
Daniel A. Chamovitz and
Benny Chor},
editor = {Rita Casadio and
Gene Myers},
title = {Time-Window Analysis of Developmental Gene Expression Data with Multiple
Genetic Backgrounds},
booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005,
Mallorca, Spain, October 3-6, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3692},
pages = {53--64},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11557067\_5},
doi = {10.1007/11557067\_5},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/TullerOMCC05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/VashistKM05,
author = {Akshay Vashist and
Casimir A. Kulikowski and
Ilya B. Muchnik},
editor = {Rita Casadio and
Gene Myers},
title = {Ortholog Clustering on a Multipartite Graph},
booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005,
Mallorca, Spain, October 3-6, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3692},
pages = {328--340},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11557067\_27},
doi = {10.1007/11557067\_27},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/VashistKM05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/VeberYAP05,
author = {Philippe Veber and
Nicola Yanev and
Rumen Andonov and
Vincent Poirriez},
editor = {Rita Casadio and
Gene Myers},
title = {Optimal Protein Threading by Cost-Splitting},
booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005,
Mallorca, Spain, October 3-6, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3692},
pages = {365--375},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11557067\_30},
doi = {10.1007/11557067\_30},
timestamp = {Mon, 05 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/VeberYAP05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Wernicke05,
author = {Sebastian Wernicke},
editor = {Rita Casadio and
Gene Myers},
title = {A Faster Algorithm for Detecting Network Motifs},
booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005,
Mallorca, Spain, October 3-6, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3692},
pages = {165--177},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11557067\_14},
doi = {10.1007/11557067\_14},
timestamp = {Sun, 20 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/Wernicke05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/WuYL05,
author = {Gang Wu and
Jia{-}Huai You and
Guohui Lin},
editor = {Rita Casadio and
Gene Myers},
title = {A Lookahead Branch-and-Bound Algorithm for the Maximum Quartet Consistency
Problem},
booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005,
Mallorca, Spain, October 3-6, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3692},
pages = {65--76},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11557067\_6},
doi = {10.1007/11557067\_6},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/WuYL05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ZilbersteinZ05,
author = {Chaya Ben{-}Zaken Zilberstein and
Michal Ziv{-}Ukelson},
editor = {Rita Casadio and
Gene Myers},
title = {Dynamic De-Novo Prediction of microRNAs Associated with Cell Conditions:
{A} Search Pruned by Expression},
booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005,
Mallorca, Spain, October 3-6, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3692},
pages = {13--26},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11557067\_2},
doi = {10.1007/11557067\_2},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ZilbersteinZ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/wabi/2005,
editor = {Rita Casadio and
Gene Myers},
title = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005,
Mallorca, Spain, October 3-6, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3692},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11557067},
doi = {10.1007/11557067},
isbn = {3-540-29008-7},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/2005.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/AllaliS04,
author = {Julien Allali and
Marie{-}France Sagot},
editor = {Inge Jonassen and
Junhyong Kim},
title = {Novel Tree Edit Operations for {RNA} Secondary Structure Comparison},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {412--425},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_35},
doi = {10.1007/978-3-540-30219-3\_35},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/AllaliS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/AngelovHKKKW04,
author = {Stanislav Angelov and
Boulos Harb and
Sampath Kannan and
Sanjeev Khanna and
Junhyong Kim and
Li{-}San Wang},
editor = {Inge Jonassen and
Junhyong Kim},
title = {Genome Identification and Classification by Short Oligo Arrays},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {400--411},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_34},
doi = {10.1007/978-3-540-30219-3\_34},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/AngelovHKKKW04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/AngelovKLP04,
author = {Stanislav Angelov and
Sanjeev Khanna and
Li Li and
Fernando Pereira},
editor = {Inge Jonassen and
Junhyong Kim},
title = {{ATDD:} An Algorithmic Tool for Domain Discovery in Protein Sequences},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {206--217},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_18},
doi = {10.1007/978-3-540-30219-3\_18},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/AngelovKLP04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ApostolicoP04,
author = {Alberto Apostolico and
Cinzia Pizzi},
editor = {Inge Jonassen and
Junhyong Kim},
title = {Monotone Scoring of Patterns with Mismatches: (Extended Abstract)},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {87--98},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_8},
doi = {10.1007/978-3-540-30219-3\_8},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ApostolicoP04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Balev04,
author = {Stefan Balev},
editor = {Inge Jonassen and
Junhyong Kim},
title = {Solving the Protein Threading Problem by Lagrangian Relaxation},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {182--193},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_16},
doi = {10.1007/978-3-540-30219-3\_16},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Balev04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BannaiHSTNM04,
author = {Hideo Bannai and
Heikki Hyyr{\"{o}} and
Ayumi Shinohara and
Masayuki Takeda and
Kenta Nakai and
Satoru Miyano},
editor = {Inge Jonassen and
Junhyong Kim},
title = {Finding Optimal Pairs of Patterns},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {450--462},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_38},
doi = {10.1007/978-3-540-30219-3\_38},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BannaiHSTNM04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BehzadiS04,
author = {Behshad Behzadi and
Jean{-}Marc Steyaert},
editor = {Inge Jonassen and
Junhyong Kim},
title = {The Minisatellite Transformation Problem Revisited: {A} Run Length
Encoded Approach},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {290--301},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_25},
doi = {10.1007/978-3-540-30219-3\_25},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BehzadiS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Berger-Wolf04,
author = {Tanya Y. Berger{-}Wolf},
editor = {Inge Jonassen and
Junhyong Kim},
title = {Online Consensus and Agreement of Phylogenetic Trees},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {350--361},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_30},
doi = {10.1007/978-3-540-30219-3\_30},
timestamp = {Mon, 05 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Berger-Wolf04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BergeronBCC04,
author = {Anne Bergeron and
Mathieu Blanchette and
Annie Chateau and
C{\'{e}}dric Chauve},
editor = {Inge Jonassen and
Junhyong Kim},
title = {Reconstructing Ancestral Gene Orders Using Conserved Intervals},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {14--25},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_2},
doi = {10.1007/978-3-540-30219-3\_2},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BergeronBCC04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BertrandG04,
author = {Denis Bertrand and
Olivier Gascuel},
editor = {Inge Jonassen and
Junhyong Kim},
title = {Topological Rearrangements and Local Search Method for Tandem Duplication
Trees},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {374--387},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_32},
doi = {10.1007/978-3-540-30219-3\_32},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BertrandG04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BrejovaBV04,
author = {Brona Brejov{\'{a}} and
Daniel G. Brown and
Tom{\'{a}}s Vinar},
editor = {Inge Jonassen and
Junhyong Kim},
title = {The Most Probable Labeling Problem in HMMs and Its Application to
Bioinformatics},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {426--437},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_36},
doi = {10.1007/978-3-540-30219-3\_36},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BrejovaBV04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Brown04,
author = {Daniel G. Brown},
editor = {Inge Jonassen and
Junhyong Kim},
title = {Multiple Vector Seeds for Protein Alignment},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {170--181},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_15},
doi = {10.1007/978-3-540-30219-3\_15},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Brown04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BrownH04,
author = {Daniel G. Brown and
Ian M. Harrower},
editor = {Inge Jonassen and
Junhyong Kim},
title = {A New Integer Programming Formulation for the Pure Parsimony Problem
in Haplotype Analysis},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {254--265},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_22},
doi = {10.1007/978-3-540-30219-3\_22},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BrownH04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BrownH04a,
author = {Daniel G. Brown and
Alexander K. Hudek},
editor = {Inge Jonassen and
Junhyong Kim},
title = {New Algorithms for Multiple {DNA} Sequence Alignment},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {314--325},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_27},
doi = {10.1007/978-3-540-30219-3\_27},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BrownH04a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ChoiAER04,
author = {Vicky Choi and
Pankaj K. Agarwal and
Herbert Edelsbrunner and
Johannes Rudolph},
editor = {Inge Jonassen and
Junhyong Kim},
title = {Local Search Heuristic for Rigid Protein Docking},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {218--229},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_19},
doi = {10.1007/978-3-540-30219-3\_19},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ChoiAER04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ChorT04,
author = {Benny Chor and
Tamir Tuller},
editor = {Inge Jonassen and
Junhyong Kim},
title = {Adding Hidden Nodes to Gene Networks (Extended Abstract)},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {123--134},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_11},
doi = {10.1007/978-3-540-30219-3\_11},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ChorT04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Csuros04,
author = {Mikl{\'{o}}s Cs{\"{u}}r{\"{o}}s},
editor = {Inge Jonassen and
Junhyong Kim},
title = {Algorithms for Finding Maximal-Scoring Segment Sets (Extended Abstract)},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {62--73},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_6},
doi = {10.1007/978-3-540-30219-3\_6},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Csuros04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Earnest-DeYoungLM04,
author = {Joel V. Earnest{-}DeYoung and
Emmanuelle Lerat and
Bernard M. E. Moret},
editor = {Inge Jonassen and
Junhyong Kim},
title = {Reversing Gene Erosion - Reconstructing Ancestral Bacterial Genomes
from Gene-Content and Order Data},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {1--13},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_1},
doi = {10.1007/978-3-540-30219-3\_1},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Earnest-DeYoungLM04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/EdwardsL04,
author = {Nathan Edwards and
Ross Lippert},
editor = {Inge Jonassen and
Junhyong Kim},
title = {Sequence Database Compression for Peptide Identification from Tandem
Mass Spectra},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {230--241},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_20},
doi = {10.1007/978-3-540-30219-3\_20},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/EdwardsL04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/FigeacV04,
author = {Martin Figeac and
Jean{-}St{\'{e}}phane Varr{\'{e}}},
editor = {Inge Jonassen and
Junhyong Kim},
title = {Sorting by Reversals with Common Intervals},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {26--37},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_3},
doi = {10.1007/978-3-540-30219-3\_3},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/FigeacV04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Gramm04,
author = {Jens Gramm},
editor = {Inge Jonassen and
Junhyong Kim},
title = {A Polynomial-Time Algorithm for the Matching of Crossing Contact-Map
Patterns},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {38--49},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_4},
doi = {10.1007/978-3-540-30219-3\_4},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Gramm04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/HartmanS04,
author = {Tzvika Hartman and
Roded Sharan},
editor = {Inge Jonassen and
Junhyong Kim},
title = {A 1.5-Approximation Algorithm for Sorting by Transpositions and Transreversals},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {50--61},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_5},
doi = {10.1007/978-3-540-30219-3\_5},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/HartmanS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/HeZ04,
author = {Jingwu He and
Alexander Zelikovsky},
editor = {Inge Jonassen and
Junhyong Kim},
title = {Linear Reduction for Haplotype Inference},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {242--253},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_21},
doi = {10.1007/978-3-540-30219-3\_21},
timestamp = {Wed, 25 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/HeZ04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/HuangZCC04,
author = {Yao{-}Ting Huang and
Kui Zhang and
Ting Chen and
Kun{-}Mao Chao},
editor = {Inge Jonassen and
Junhyong Kim},
title = {Approximation Algorithms for the Selection of Robust Tag SNPs},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {278--289},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_24},
doi = {10.1007/978-3-540-30219-3\_24},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/HuangZCC04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/HusonDKS04,
author = {Daniel H. Huson and
Tobias Dezulian and
Tobias H. Kl{\"{o}}pper and
Mike A. Steel},
editor = {Inge Jonassen and
Junhyong Kim},
title = {Phylogenetic Super-networks from Partial Trees},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {388--399},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_33},
doi = {10.1007/978-3-540-30219-3\_33},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/HusonDKS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/InenagaKM04,
author = {Shunsuke Inenaga and
Teemu Kivioja and
Veli M{\"{a}}kinen},
editor = {Inge Jonassen and
Junhyong Kim},
title = {Finding Missing Patterns},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {463--474},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_39},
doi = {10.1007/978-3-540-30219-3\_39},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/InenagaKM04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/JanssonNSW04,
author = {Jesper Jansson and
See{-}Kiong Ng and
Wing{-}Kin Sung and
Hugo Willy},
editor = {Inge Jonassen and
Junhyong Kim},
title = {A Faster and More Space-Efficient Algorithm for Inferring Arc-Annotations
of {RNA} Sequences Through Alignment},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {302--313},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_26},
doi = {10.1007/978-3-540-30219-3\_26},
timestamp = {Tue, 17 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/JanssonNSW04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/KeichN04,
author = {Uri Keich and
Niranjan Nagarajan},
editor = {Inge Jonassen and
Junhyong Kim},
title = {A Faster Reliable Algorithm to Estimate the p-Value of the Multinomial
llr Statistic},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {111--122},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_10},
doi = {10.1007/978-3-540-30219-3\_10},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/KeichN04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/LiLZ04,
author = {Guoliang Li and
Tze{-}Yun Leong and
Louxin Zhang},
editor = {Inge Jonassen and
Junhyong Kim},
title = {Translation Initiation Sites Prediction with Mixture Gaussian Models},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {338--349},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_29},
doi = {10.1007/978-3-540-30219-3\_29},
timestamp = {Fri, 10 Nov 2017 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/LiLZ04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/LipsonBDY04,
author = {Doron Lipson and
Amir Ben{-}Dor and
Elinor Dehan and
Zohar Yakhini},
editor = {Inge Jonassen and
Junhyong Kim},
title = {Joint Analysis of {DNA} Copy Numbers and Gene Expression Levels},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {135--146},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_12},
doi = {10.1007/978-3-540-30219-3\_12},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/LipsonBDY04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/LiskiewiczPR04,
author = {Maciej Liskiewicz and
Hemant J. Purohit and
Dhananjay V. Raje},
editor = {Inge Jonassen and
Junhyong Kim},
title = {Relation of Residues in the Variable Region of 16S rDNA Sequences
and Their Relevance to Genus-Specificity},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {362--373},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_31},
doi = {10.1007/978-3-540-30219-3\_31},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/LiskiewiczPR04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MichaelDS04,
author = {Morris Michael and
Christoph Dieterich and
Jens Stoye},
editor = {Inge Jonassen and
Junhyong Kim},
title = {Suboptimal Local Alignments Across Multiple Scoring Schemes},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {99--110},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_9},
doi = {10.1007/978-3-540-30219-3\_9},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/MichaelDS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/NarayananK04,
author = {Manikandan Narayanan and
Richard M. Karp},
editor = {Inge Jonassen and
Junhyong Kim},
title = {Gapped Local Similarity Search with Provable Guarantees},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {74--86},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_7},
doi = {10.1007/978-3-540-30219-3\_7},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/NarayananK04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/PanconesiS04,
author = {Alessandro Panconesi and
Mauro Sozio},
editor = {Inge Jonassen and
Junhyong Kim},
title = {Fast Hare: {A} Fast Heuristic for Single Individual {SNP} Haplotype
Reconstruction},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {266--277},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_23},
doi = {10.1007/978-3-540-30219-3\_23},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/PanconesiS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ShigemizuM04,
author = {Daichi Shigemizu and
Osamu Maruyama},
editor = {Inge Jonassen and
Junhyong Kim},
title = {Searching for Regulatory Elements of Alternative Splicing Events Using
Phylogenetic Footprinting},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {147--158},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_13},
doi = {10.1007/978-3-540-30219-3\_13},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ShigemizuM04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Shulman-PelegMNW04,
author = {Alexandra Shulman{-}Peleg and
Shira Mintz and
Ruth Nussinov and
Haim J. Wolfson},
editor = {Inge Jonassen and
Junhyong Kim},
title = {Protein-Protein Interfaces: Recognition of Similar Spatial and Chemical
Organizations},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {194--205},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_17},
doi = {10.1007/978-3-540-30219-3\_17},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Shulman-PelegMNW04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SoinovKK04,
author = {Lev Soinov and
Alexander Kanapin and
Misha Kapushesky},
editor = {Inge Jonassen and
Junhyong Kim},
title = {Supervised Learning-Aided Optimization of Expert-Driven Functional
Protein Sequence Annotation},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {159--169},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_14},
doi = {10.1007/978-3-540-30219-3\_14},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/SoinovKK04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SundararajanBSSB04,
author = {Mukund Sundararajan and
Michael Brudno and
Kerrin S. Small and
Arend Sidow and
Serafim Batzoglou},
editor = {Inge Jonassen and
Junhyong Kim},
title = {Chaining Algorithms for Alignment of Draft Sequence},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {326--337},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_28},
doi = {10.1007/978-3-540-30219-3\_28},
timestamp = {Tue, 26 Mar 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/SundararajanBSSB04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SzeLC04,
author = {Sing{-}Hoi Sze and
Songjian Lu and
Jianer Chen},
editor = {Inge Jonassen and
Junhyong Kim},
title = {Integrating Sample-Driven and Pattern-Driven Approaches in Motif Finding},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {438--449},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_37},
doi = {10.1007/978-3-540-30219-3\_37},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SzeLC04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/wabi/2004,
editor = {Inge Jonassen and
Junhyong Kim},
title = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/b100405},
doi = {10.1007/B100405},
isbn = {3-540-23018-1},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/2004.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/AbouelhodaO03,
author = {Mohamed Ibrahim Abouelhoda and
Enno Ohlebusch},
editor = {Gary Benson and
Roderic D. M. Page},
title = {A Local Chaining Algorithm and Its Applications in Comparative Genomics},
booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
pages = {1--16},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39763-2\_1},
doi = {10.1007/978-3-540-39763-2\_1},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/AbouelhodaO03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Addario-BerryCHLPW03,
author = {Louigi Addario{-}Berry and
Benny Chor and
Michael T. Hallett and
Jens Lagergren and
Alessandro Panconesi and
Todd Wareham},
editor = {Gary Benson and
Roderic D. M. Page},
title = {Ancestral Maximum Likelihood of Evolutionary Trees Is Hard},
booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
pages = {202--215},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39763-2\_16},
doi = {10.1007/978-3-540-39763-2\_16},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Addario-BerryCHLPW03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/AmentaCJ03,
author = {Nina Amenta and
Frederick Clarke and
Katherine St. John},
editor = {Gary Benson and
Roderic D. M. Page},
title = {A Linear-Time Majority Tree Algorithm},
booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
pages = {216--227},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39763-2\_17},
doi = {10.1007/978-3-540-39763-2\_17},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/AmentaCJ03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/AumannMY03,
author = {Yonatan Aumann and
Efrat Manisterski and
Zohar Yakhini},
editor = {Gary Benson and
Roderic D. M. Page},
title = {Designing Optimally Multiplexed {SNP} Genotyping Assays},
booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
pages = {320--338},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39763-2\_24},
doi = {10.1007/978-3-540-39763-2\_24},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/AumannMY03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Benson03,
author = {Gary Benson},
editor = {Gary Benson and
Roderic D. M. Page},
title = {Composition Alignment},
booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
pages = {447--461},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39763-2\_32},
doi = {10.1007/978-3-540-39763-2\_32},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Benson03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BlazewiczJ03,
author = {Jacek Blazewicz and
Marcin Jaroszewski},
editor = {Gary Benson and
Roderic D. M. Page},
title = {New Algorithm for the Simplified Partial Digest Problem},
booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
pages = {95--110},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39763-2\_8},
doi = {10.1007/978-3-540-39763-2\_8},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/BlazewiczJ03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BocM03,
author = {Alix Boc and
Vladimir Makarenkov},
editor = {Gary Benson and
Roderic D. M. Page},
title = {New Efficient Algorithm for Detection of Horizontal Gene Transfer
Events},
booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
pages = {190--201},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39763-2\_15},
doi = {10.1007/978-3-540-39763-2\_15},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BocM03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Bocker03,
author = {Sebastian B{\"{o}}cker},
editor = {Gary Benson and
Roderic D. M. Page},
title = {Sequencing from Compomers: Using Mass Spectrometry for {DNA} De-Novo
Sequencing of 200+ nt},
booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
pages = {476--497},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39763-2\_34},
doi = {10.1007/978-3-540-39763-2\_34},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Bocker03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BonizzoniPR03,
author = {Paola Bonizzoni and
Graziano Pesole and
Raffaella Rizzi},
editor = {Gary Benson and
Roderic D. M. Page},
title = {A Method to Detect Gene Structure and Alternative Splice Sites by
Agreeing ESTs to a Genomic Sequence},
booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
pages = {63--77},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39763-2\_6},
doi = {10.1007/978-3-540-39763-2\_6},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BonizzoniPR03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BrejovaBV03,
author = {Brona Brejov{\'{a}} and
Daniel G. Brown and
Tom{\'{a}}s Vinar},
editor = {Gary Benson and
Roderic D. M. Page},
title = {Vector Seeds: An Extension to Spaced Seeds Allows Substantial Improvements
in Sensitivity and Specifity},
booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
pages = {39--54},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39763-2\_4},
doi = {10.1007/978-3-540-39763-2\_4},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BrejovaBV03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BrejovaBV03a,
author = {Brona Brejov{\'{a}} and
Daniel G. Brown and
Tom{\'{a}}s Vinar},
editor = {Gary Benson and
Roderic D. M. Page},
title = {Optimal {DNA} Signal Recognition Models with a Fixed Amount of Intrasignal
Dependency},
booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
pages = {78--94},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39763-2\_7},
doi = {10.1007/978-3-540-39763-2\_7},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BrejovaBV03a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BrodalFOPR03,
author = {Gerth St{\o}lting Brodal and
Rolf Fagerberg and
Anna {\"{O}}stlin and
Christian N. S. Pedersen and
S. Srinivasa Rao},
editor = {Gary Benson and
Roderic D. M. Page},
title = {Computing Refined Buneman Trees in Cubic Time},
booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
pages = {259--270},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39763-2\_20},
doi = {10.1007/978-3-540-39763-2\_20},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BrodalFOPR03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BryantHKN03,
author = {David Bryant and
Daniel H. Huson and
Tobias H. Kl{\"{o}}pper and
Kay Nieselt{-}Struwe},
editor = {Gary Benson and
Roderic D. M. Page},
title = {Distance Corrections on Recombinant Sequences},
booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
pages = {271--286},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39763-2\_21},
doi = {10.1007/978-3-540-39763-2\_21},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BryantHKN03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/CieliebakEP03,
author = {Mark Cieliebak and
Stephan J. Eidenbenz and
Paolo Penna},
editor = {Gary Benson and
Roderic D. M. Page},
title = {Noisy Data Make the Partial Digest Problem NP-hard},
booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
pages = {111--123},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39763-2\_9},
doi = {10.1007/978-3-540-39763-2\_9},
timestamp = {Wed, 11 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/CieliebakEP03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ColingeMM03,
author = {Jacques Colinge and
Alexandre Masselot and
J{\'{e}}r{\^{o}}me Magnin},
editor = {Gary Benson and
Roderic D. M. Page},
title = {A Systematic Statistical Analysis of Ion Trap Tandem Mass Spectra
in View of Peptide Scoring},
booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
pages = {25--38},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39763-2\_3},
doi = {10.1007/978-3-540-39763-2\_3},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ColingeMM03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Didier03,
author = {Gilles Didier},
editor = {Gary Benson and
Roderic D. M. Page},
title = {Common Intervals of Two Sequences},
booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
pages = {17--24},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39763-2\_2},
doi = {10.1007/978-3-540-39763-2\_2},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Didier03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/DoiLJ03,
author = {Koichiro Doi and
Jing Li and
Tao Jiang},
editor = {Gary Benson and
Roderic D. M. Page},
title = {Minimum Recombiant Haplotype Configuration on Tree Pedigrees},
booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
pages = {339--353},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39763-2\_25},
doi = {10.1007/978-3-540-39763-2\_25},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/DoiLJ03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/EresLP03,
author = {Revital Eres and
Gad M. Landau and
Laxmi Parida},
editor = {Gary Benson and
Roderic D. M. Page},
title = {A Combinatorial Approach to Automatic Discovery of Cluster-Patterns},
booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
pages = {139--150},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39763-2\_11},
doi = {10.1007/978-3-540-39763-2\_11},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/EresLP03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/FredslundHS03,
author = {Jakob Fredslund and
Jotun Hein and
Tejs Scharling},
editor = {Gary Benson and
Roderic D. M. Page},
title = {A Large Version of the Small Parsimony Problem},
booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
pages = {417--432},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39763-2\_30},
doi = {10.1007/978-3-540-39763-2\_30},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/FredslundHS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/GanapathyRW03,
author = {Ganeshkumar Ganapathy and
Vijaya Ramachandran and
Tandy J. Warnow},
editor = {Gary Benson and
Roderic D. M. Page},
title = {Better Hill-Climbing Searches for Parsimony},
booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
pages = {245--258},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39763-2\_19},
doi = {10.1007/978-3-540-39763-2\_19},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/GanapathyRW03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/HollandM03,
author = {Barbara R. Holland and
Vincent Moulton},
editor = {Gary Benson and
Roderic D. M. Page},
title = {Consensus Networks: {A} Method for Visualising Incompatibilities in
Collections of Trees},
booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
pages = {165--176},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39763-2\_13},
doi = {10.1007/978-3-540-39763-2\_13},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/HollandM03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/HollasS03,
author = {Boris Hollas and
Rainer Schuler},
editor = {Gary Benson and
Roderic D. M. Page},
title = {A Stochastic Approach to Count {RNA} Molecules Using {DNA} Sequencing
Methods},
booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
pages = {55--62},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39763-2\_5},
doi = {10.1007/978-3-540-39763-2\_5},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/HollasS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/KearneyMP03,
author = {Paul E. Kearney and
J. Ian Munro and
Derek Phillips},
editor = {Gary Benson and
Roderic D. M. Page},
title = {Efficient Generation of Uniform Samples from Phylogenetic Trees},
booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
pages = {177--189},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39763-2\_14},
doi = {10.1007/978-3-540-39763-2\_14},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/KearneyMP03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/KimmelSS03,
author = {Gad Kimmel and
Roded Sharan and
Ron Shamir},
editor = {Gary Benson and
Roderic D. M. Page},
title = {Identifying Blocks and Sub-populations in Noisy {SNP} Data},
booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
pages = {303--319},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39763-2\_23},
doi = {10.1007/978-3-540-39763-2\_23},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/KimmelSS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Knudsen03,
author = {Bjarne Knudsen},
editor = {Gary Benson and
Roderic D. M. Page},
title = {Optimal Multiple Parsimony Alignment with Affine Gap Cost Using a
Phylogenetic Tree},
booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
pages = {433--446},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39763-2\_31},
doi = {10.1007/978-3-540-39763-2\_31},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Knudsen03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/LotanSL03,
author = {Itay Lotan and
Fabian Schwarzer and
Jean{-}Claude Latombe},
editor = {Gary Benson and
Roderic D. M. Page},
title = {Efficient Energy Computation for Monte Carlo Simulation of Proteins},
booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
pages = {354--373},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39763-2\_26},
doi = {10.1007/978-3-540-39763-2\_26},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/LotanSL03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/LunterMDJH03,
author = {Gerton Lunter and
Istv{\'{a}}n Mikl{\'{o}}s and
Alexei J. Drummond and
Jens Ledet Jensen and
Jotun Hein},
editor = {Gary Benson and
Roderic D. M. Page},
title = {Bayesian Phylogenetic Inference under a Statistical Insertion-Deletion
Model},
booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
pages = {228--244},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39763-2\_18},
doi = {10.1007/978-3-540-39763-2\_18},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/LunterMDJH03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MancheronR03,
author = {Alban Mancheron and
Irena Rusu},
editor = {Gary Benson and
Roderic D. M. Page},
title = {Pattern Discovery Allowing Wild-Cards, Substitution Matrices, and
Multiple Score Functions},
booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
pages = {124--138},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39763-2\_10},
doi = {10.1007/978-3-540-39763-2\_10},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/MancheronR03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/PrasadSCV03,
author = {Jahnavi C. Prasad and
Michael Silberstein and
Carlos J. Camacho and
Sandor Vajda},
editor = {Gary Benson and
Roderic D. M. Page},
title = {Homology Modeling of Proteins Using Multiple Models and Consensus
Sequence Alignment},
booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
pages = {389--401},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39763-2\_28},
doi = {10.1007/978-3-540-39763-2\_28},
timestamp = {Sat, 24 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/PrasadSCV03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Rahmann03,
author = {Sven Rahmann},
editor = {Gary Benson and
Roderic D. M. Page},
title = {Dynamic Programming Algorithms for Two Statistical Problems in Computational
Biology},
booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
pages = {151--164},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39763-2\_12},
doi = {10.1007/978-3-540-39763-2\_12},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Rahmann03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ShibuyaK03,
author = {Tetsuo Shibuya and
Igor Kurochkin},
editor = {Gary Benson and
Roderic D. M. Page},
title = {Match Chaining Algorithms for cDNA Mapping},
booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
pages = {462--475},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39763-2\_33},
doi = {10.1007/978-3-540-39763-2\_33},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ShibuyaK03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SongH03,
author = {Yun S. Song and
Jotun Hein},
editor = {Gary Benson and
Roderic D. M. Page},
title = {Parsimonious Reconstruction of Sequence Evolution and Haplotype Blocks},
booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
pages = {287--302},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39763-2\_22},
doi = {10.1007/978-3-540-39763-2\_22},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SongH03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SouvenirBSZ03,
author = {Richard Souvenir and
Jeremy Buhler and
Gary D. Stormo and
Weixiong Zhang},
editor = {Gary Benson and
Roderic D. M. Page},
title = {Selecting Degenerate Multiplex {PCR} Primers},
booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
pages = {512--526},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39763-2\_36},
doi = {10.1007/978-3-540-39763-2\_36},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/SouvenirBSZ03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Spriet03,
author = {Jan A. Spriet},
editor = {Gary Benson and
Roderic D. M. Page},
title = {Side-Chain Structure Prediction Based on Dead-End Elimination: Single
Split DEE-criterion Implementation and Elimination Power},
booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
pages = {402--416},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39763-2\_29},
doi = {10.1007/978-3-540-39763-2\_29},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Spriet03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Tsur03,
author = {Dekel Tsur},
editor = {Gary Benson and
Roderic D. M. Page},
title = {Bounds for Resquencing by Hybridization},
booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
pages = {498--511},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39763-2\_35},
doi = {10.1007/978-3-540-39763-2\_35},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Tsur03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Xu03,
author = {Jinbo Xu},
editor = {Gary Benson and
Roderic D. M. Page},
title = {Speedup {LP} Approach to Protein Threading via Graph Reduction},
booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
pages = {374--388},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39763-2\_27},
doi = {10.1007/978-3-540-39763-2\_27},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Xu03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/wabi/2003,
editor = {Gary Benson and
Roderic D. M. Page},
title = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/b13243},
doi = {10.1007/B13243},
isbn = {3-540-20076-2},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/2003.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/AbouelhodaKO02,
author = {Mohamed Ibrahim Abouelhoda and
Stefan Kurtz and
Enno Ohlebusch},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {The Enhanced Suffix Array and Its Applications to Genome Analysis},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {449--463},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_35},
doi = {10.1007/3-540-45784-4\_35},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/AbouelhodaKO02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/AdebiyiK02,
author = {Ezekiel F. Adebiyi and
Michael Kaufmann},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {Extracting Common Motifs under the Levenshtein Measure: Theory and
Experimentation},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {140--156},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_11},
doi = {10.1007/3-540-45784-4\_11},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/AdebiyiK02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/AjanaLTE02,
author = {Yasmine Ajana and
Jean{-}Fran{\c{c}}ois Lefebvre and
Elisabeth R. M. Tillier and
Nadia El{-}Mabrouk},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {Exploring the Set of All Minimal Sequences of Reversals - An Application
to Test the Replication-Directed Reversal Hypothesis},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {300--315},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_23},
doi = {10.1007/3-540-45784-4\_23},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/AjanaLTE02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Bar-JosephDGHJS02,
author = {Ziv Bar{-}Joseph and
Erik D. Demaine and
David K. Gifford and
Ang{\`{e}}le M. Hamel and
Tommi S. Jaakkola and
Nathan Srebro},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {K-ary Clustering with Optimal Leaf Ordering for Gene Expression Data},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {506--520},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_39},
doi = {10.1007/3-540-45784-4\_39},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Bar-JosephDGHJS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BergeronCR02,
author = {Anne Bergeron and
Sylvie Corteel and
Mathieu Raffinot},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {The Algorithmic of Gene Teams},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {464--476},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_36},
doi = {10.1007/3-540-45784-4\_36},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/BergeronCR02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BermanBDGKS02,
author = {Piotr Berman and
Paul Bertone and
Bhaskar DasGupta and
Mark Gerstein and
Ming{-}Yang Kao and
Michael Snyder},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {Fast Optimal Genome Tiling with Applications to Microarray Design
and Homology Search},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {419--433},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_32},
doi = {10.1007/3-540-45784-4\_32},
timestamp = {Mon, 15 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BermanBDGKS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BiluL02,
author = {Yonatan Bilu and
Michal Linial},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {Functional Consequences in Metabolic Pathways from Phylogenetic Profiles},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {263--276},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_20},
doi = {10.1007/3-540-45784-4\_20},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BiluL02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BryantM02,
author = {David Bryant and
Vincent Moulton},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {NeighborNet: An Agglomerative Method for the Construction of Planar
Phylogenetic Networks},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {375--391},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_28},
doi = {10.1007/3-540-45784-4\_28},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BryantM02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ChenJLWXX02,
author = {Zhi{-}Zhong Chen and
Tao Jiang and
Guo{-}Hui Lin and
Jianjun Wen and
Dong Xu and
Ying Xu},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {Improved Approximation Algorithms for {NMR} Spectral Peak Assignment},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {82--96},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_7},
doi = {10.1007/3-540-45784-4\_7},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ChenJLWXX02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/CsurosM02,
author = {Mikl{\'{o}}s Cs{\"{u}}r{\"{o}}s and
Aleksandar Milosavljevic},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {Pooled Genomic Indexing {(PGI):} Mathematical Analysis and Experiment
Design},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {10--28},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_2},
doi = {10.1007/3-540-45784-4\_2},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/CsurosM02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/DesperG02,
author = {Richard Desper and
Olivier Gascuel},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {Fast and Accurate Phylogeny Reconstruction Algorithms Based on the
Minimum-Evolution Principle},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {357--374},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_27},
doi = {10.1007/3-540-45784-4\_27},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/DesperG02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/DuhovnyNW02,
author = {Dina Duhovny and
Ruth Nussinov and
Haim J. Wolfson},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {Efficient Unbound Docking of Rigid Molecules},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {185--200},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_14},
doi = {10.1007/3-540-45784-4\_14},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/DuhovnyNW02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/EdwardsL02,
author = {Nathan Edwards and
Ross Lippert},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {Generating Peptide Candidates from Amino-Acid Sequence Databases for
Protein Identification via Mass Spectrometry},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {68--81},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_6},
doi = {10.1007/3-540-45784-4\_6},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/EdwardsL02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Eriksen02,
author = {Niklas Eriksen},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {Approximating the Expected Number of Inversions Given the Number of
Breakpoints},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {316--330},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_24},
doi = {10.1007/3-540-45784-4\_24},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Eriksen02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/GoldwasserKL02,
author = {Michael H. Goldwasser and
Ming{-}Yang Kao and
Hsueh{-}I Lu},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {Fast Algorithms for Finding Maximum-Density Segments of a Sequence
with Applications to Bioinformatics},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {157--171},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_12},
doi = {10.1007/3-540-45784-4\_12},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/GoldwasserKL02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/GrateBJM02,
author = {L. R. Grate and
Chiranjib Bhattacharyya and
Michael I. Jordan and
I. Saira Mian},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {Simultaneous Relevant Feature Identification and Classification in
High-Dimensional Spaces},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {1--9},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_1},
doi = {10.1007/3-540-45784-4\_1},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/GrateBJM02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/HalpernHR02,
author = {Aaron L. Halpern and
Daniel H. Huson and
Knut Reinert},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {Segment Match Refinement and Applications},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {126--139},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_10},
doi = {10.1007/3-540-45784-4\_10},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/HalpernHR02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/KahngMPRZ02,
author = {Andrew B. Kahng and
Ion I. Mandoiu and
Pavel A. Pevzner and
Sherief Reda and
Alexander Zelikovsky},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {Border Length Minimization in {DNA} Array Design},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {435--448},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_34},
doi = {10.1007/3-540-45784-4\_34},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/KahngMPRZ02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/LeongPSW02,
author = {Hon Wai Leong and
Franco P. Preparata and
Wing{-}Kin Sung and
Hugo Willy},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {On the Control of Hybridization Noise in {DNA} Sequencing-by-Hybridization},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {392--403},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_29},
doi = {10.1007/3-540-45784-4\_29},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/LeongPSW02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/LipsonWY02,
author = {Doron Lipson and
Peter Webb and
Zohar Yakhini},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {Designing Specific Oligonucleotide Probes for the Entire S. cerevisiae
Transcriptome},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {491--505},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_38},
doi = {10.1007/3-540-45784-4\_38},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/LipsonWY02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MilikSO02,
author = {Mariusz Milik and
S{\'{a}}ndor Szalma and
Krzysztof A. Olszewski},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {{FAUST:} An Algorithm for Extracting Functionally Relevant Templates
from Protein Structures},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {172--184},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_13},
doi = {10.1007/3-540-45784-4\_13},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/MilikSO02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MoretRW02,
author = {Bernard M. E. Moret and
Usman Roshan and
Tandy J. Warnow},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {Sequence-Length Requirements for Phylogenetic Methods},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {343--356},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_26},
doi = {10.1007/3-540-45784-4\_26},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/MoretRW02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MoretSTL02,
author = {Bernard M. E. Moret and
Adam C. Siepel and
Jijun Tang and
Tao Liu},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {Inversion Medians Outperform Breakpoint Medians in Phylogeny Reconstruction
from Gene-Order Data},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {521--536},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_40},
doi = {10.1007/3-540-45784-4\_40},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/MoretSTL02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MyersD02,
author = {Gene Myers and
Richard Durbin},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {Invited Lecture - Accelerating Smith-Waterman Searches},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {331--342},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_25},
doi = {10.1007/3-540-45784-4\_25},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/MyersD02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/NakhlehRVW02,
author = {Luay Nakhleh and
Usman Roshan and
Lisa Vawter and
Tandy J. Warnow},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {Estimating the Deviation from a Molecular Clock},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {287--299},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_22},
doi = {10.1007/3-540-45784-4\_22},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/NakhlehRVW02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Page02,
author = {Roderic D. M. Page},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {Modified Mincut Supertrees},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {537--552},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_41},
doi = {10.1007/3-540-45784-4\_41},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/Page02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/PedersenS02,
author = {Christian N. S. Pedersen and
Tejs Scharling},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {Comparative Methods for Gene Structure Prediction in Homologous Sequences},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {220--234},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_17},
doi = {10.1007/3-540-45784-4\_17},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/PedersenS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/PerteaS02,
author = {Mihaela Pertea and
Steven Salzberg},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {A Method to Improve the Performance of Translation Start Site Detection
and Its Application for Gene Finding},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {210--219},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_16},
doi = {10.1007/3-540-45784-4\_16},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/PerteaS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Rahmann02,
author = {Sven Rahmann},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {Rapid Large-Scale Oligonucleotide Selection for Microarrays},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {434},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_33},
doi = {10.1007/3-540-45784-4\_33},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Rahmann02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ReczkoFSH02,
author = {Martin Reczko and
Petko Fiziev and
Eike Staub and
Artemis G. Hatzigeorgiou},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {Finding Signal Peptides in Human Protein Sequences Using Recurrent
Neural Networks},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {60--67},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_5},
doi = {10.1007/3-540-45784-4\_5},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ReczkoFSH02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/RizziBIL02,
author = {Romeo Rizzi and
Vineet Bafna and
Sorin Istrail and
Giuseppe Lancia},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {Practical Algorithms and Fixed-Parameter Tractability for the Single
Individual {SNP} Haplotyping Problem},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {29--43},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_3},
doi = {10.1007/3-540-45784-4\_3},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/RizziBIL02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Rocke02,
author = {Emily Rocke},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {A Hybrid Scoring Function for Protein Multiple Alignment},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {251--262},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_19},
doi = {10.1007/3-540-45784-4\_19},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Rocke02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SchwartzCI02,
author = {Russell Schwartz and
Andrew G. Clark and
Sorin Istrail},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {Methods for Inferring Block-Wise Ancestral History from Haploid Sequences},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {44--59},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_4},
doi = {10.1007/3-540-45784-4\_4},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SchwartzCI02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Shapiro02,
author = {Ehud Shapiro},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {Invited Lecture - Molecule as Computation: Towards an Abstraction
of Biomolecular Systems},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {418},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_31},
doi = {10.1007/3-540-45784-4\_31},
timestamp = {Thu, 04 Oct 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Shapiro02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ShatskyNW02,
author = {Maxim Shatsky and
Ruth Nussinov and
Haim J. Wolfson},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {MultiProt - {A} Multiple Protein Structural Alignment Algorithm},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {235--250},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_18},
doi = {10.1007/3-540-45784-4\_18},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ShatskyNW02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SkienaS02,
author = {Steven Skiena and
Sagi Snir},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {Restricting {SBH} Ambiguity via Restriction Enzymes},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {404--417},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_30},
doi = {10.1007/3-540-45784-4\_30},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SkienaS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Ukkonen02,
author = {Esko Ukkonen},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {Finding Founder Sequences from a Set of Recombinants},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {277--286},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_21},
doi = {10.1007/3-540-45784-4\_21},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Ukkonen02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Wang02,
author = {Li{-}San Wang},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {Genome Rearrangement Phylogeny Using Weighbor},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {112--125},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_9},
doi = {10.1007/3-540-45784-4\_9},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Wang02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/WarrenL02,
author = {Liling L. Warren and
Ben Hui Liu},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {Combinatorial Use of Short Probes for Differential Gene Expression
Profiling},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {477--490},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_37},
doi = {10.1007/3-540-45784-4\_37},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/WarrenL02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Wheeler02,
author = {Raymond Wheeler},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {A Method of Consolidating and Combining {EST} and mRNA Alignments
to a Genome to Enumerate Supported Splice Variants},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {201--209},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_15},
doi = {10.1007/3-540-45784-4\_15},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Wheeler02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ZhangMW02,
author = {Louxin Zhang and
Bin Ma and
Lusheng Wang},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {Efficient Methods for Inferring Tandem Duplication History},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {97--111},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_8},
doi = {10.1007/3-540-45784-4\_8},
timestamp = {Tue, 14 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/ZhangMW02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/wabi/2002,
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4},
doi = {10.1007/3-540-45784-4},
isbn = {3-540-44211-1},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/2002.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/AnantharamanM01,
author = {Thomas S. Anantharaman and
Bud Mishra},
editor = {Olivier Gascuel and
Bernard M. E. Moret},
title = {False Positives in Genomic Map Assembly and Sequence Validation},
booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI}
2001, Aarhus, Denmark, August 28-31, 2001, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2149},
pages = {27--40},
publisher = {Springer},
year = {2001},
url = {https://doi.org/10.1007/3-540-44696-6\_3},
doi = {10.1007/3-540-44696-6\_3},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/AnantharamanM01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BarashBF01,
author = {Yoseph Barash and
Gill Bejerano and
Nir Friedman},
editor = {Olivier Gascuel and
Bernard M. E. Moret},
title = {A Simple Hyper-Geometric Approach for Discovering Putative Transcription
Factor Binding Sites},
booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI}
2001, Aarhus, Denmark, August 28-31, 2001, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2149},
pages = {278--293},
publisher = {Springer},
year = {2001},
url = {https://doi.org/10.1007/3-540-44696-6\_22},
doi = {10.1007/3-540-44696-6\_22},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/BarashBF01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BergeronS01,
author = {Anne Bergeron and
Fran{\c{c}}ois Strasbourg},
editor = {Olivier Gascuel and
Bernard M. E. Moret},
title = {Experiments in Computing Sequences of Reversals},
booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI}
2001, Aarhus, Denmark, August 28-31, 2001, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2149},
pages = {164--174},
publisher = {Springer},
year = {2001},
url = {https://doi.org/10.1007/3-540-44696-6\_13},
doi = {10.1007/3-540-44696-6\_13},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BergeronS01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Caprara01,
author = {Alberto Caprara},
editor = {Olivier Gascuel and
Bernard M. E. Moret},
title = {On the Practical Solution of the Reversal Median Problem},
booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI}
2001, Aarhus, Denmark, August 28-31, 2001, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2149},
pages = {238--251},
publisher = {Springer},
year = {2001},
url = {https://doi.org/10.1007/3-540-44696-6\_19},
doi = {10.1007/3-540-44696-6\_19},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Caprara01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/CaseyMW01,
author = {Will Casey and
Bud Mishra and
Michael Wigler},
editor = {Olivier Gascuel and
Bernard M. E. Moret},
title = {Placing Probes along the Genome Using Pairwise Distance Data},
booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI}
2001, Aarhus, Denmark, August 28-31, 2001, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2149},
pages = {52--68},
publisher = {Springer},
year = {2001},
url = {https://doi.org/10.1007/3-540-44696-6\_5},
doi = {10.1007/3-540-44696-6\_5},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/CaseyMW01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ChorHP01,
author = {Benny Chor and
Michael D. Hendy and
David Penny},
editor = {Olivier Gascuel and
Bernard M. E. Moret},
title = {Analytic Solutions for Three-Taxon ML\({}_{\mbox{MC}}\) Trees with
Variable Rates Across Sites},
booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI}
2001, Aarhus, Denmark, August 28-31, 2001, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2149},
pages = {204--213},
publisher = {Springer},
year = {2001},
url = {https://doi.org/10.1007/3-540-44696-6\_16},
doi = {10.1007/3-540-44696-6\_16},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ChorHP01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/DeniseRV01,
author = {Alain Denise and
Mireille R{\'{e}}gnier and
Mathias Vandenbogaert},
editor = {Olivier Gascuel and
Bernard M. E. Moret},
title = {Assessing the Statistical Significance of Overrepresented Oligonucleotides},
booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI}
2001, Aarhus, Denmark, August 28-31, 2001, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2149},
pages = {85--97},
publisher = {Springer},
year = {2001},
url = {https://doi.org/10.1007/3-540-44696-6\_7},
doi = {10.1007/3-540-44696-6\_7},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/DeniseRV01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/EdelsbrunnerZ01,
author = {Herbert Edelsbrunner and
Afra Zomorodian},
editor = {Olivier Gascuel and
Bernard M. E. Moret},
title = {Computing Linking Numbers of a Filtration},
booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI}
2001, Aarhus, Denmark, August 28-31, 2001, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2149},
pages = {112--127},
publisher = {Springer},
year = {2001},
url = {https://doi.org/10.1007/3-540-44696-6\_9},
doi = {10.1007/3-540-44696-6\_9},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/EdelsbrunnerZ01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Eriksen01,
author = {Niklas Eriksen},
editor = {Olivier Gascuel and
Bernard M. E. Moret},
title = {(1+epsilon)-Approximation of Sorting by Reversals and Transpositions},
booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI}
2001, Aarhus, Denmark, August 28-31, 2001, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2149},
pages = {227--237},
publisher = {Springer},
year = {2001},
url = {https://doi.org/10.1007/3-540-44696-6\_18},
doi = {10.1007/3-540-44696-6\_18},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Eriksen01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ErikssonZE01,
author = {Olivia Eriksson and
Yishao Zhou and
Arne Elofsson},
editor = {Olivier Gascuel and
Bernard M. E. Moret},
title = {Side Chain-Positioning as an Integer Programming Problem},
booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI}
2001, Aarhus, Denmark, August 28-31, 2001, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2149},
pages = {128--141},
publisher = {Springer},
year = {2001},
url = {https://doi.org/10.1007/3-540-44696-6\_10},
doi = {10.1007/3-540-44696-6\_10},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ErikssonZE01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/GanapathysaravanabavanW01,
author = {Ganeshkumar Ganapathysaravanabavan and
Tandy J. Warnow},
editor = {Olivier Gascuel and
Bernard M. E. Moret},
title = {Finding a Maximum Compatible Tree for a Bounded Number of Trees with
Bounded Degree Is Solvable in Polynomial Time},
booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI}
2001, Aarhus, Denmark, August 28-31, 2001, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2149},
pages = {156--163},
publisher = {Springer},
year = {2001},
url = {https://doi.org/10.1007/3-540-44696-6\_12},
doi = {10.1007/3-540-44696-6\_12},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/GanapathysaravanabavanW01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/HeberS01,
author = {Steffen Heber and
Jens Stoye},
editor = {Olivier Gascuel and
Bernard M. E. Moret},
title = {Algorithms for Finding Gene Clusters},
booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI}
2001, Aarhus, Denmark, August 28-31, 2001, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2149},
pages = {252--263},
publisher = {Springer},
year = {2001},
url = {https://doi.org/10.1007/3-540-44696-6\_20},
doi = {10.1007/3-540-44696-6\_20},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/HeberS01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/HusonHLMRS01,
author = {Daniel H. Huson and
Aaron L. Halpern and
Zhongwu Lai and
Eugene W. Myers and
Knut Reinert and
Granger G. Sutton},
editor = {Olivier Gascuel and
Bernard M. E. Moret},
title = {Comparing Assemblies Using Fragments and Mate-Pairs},
booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI}
2001, Aarhus, Denmark, August 28-31, 2001, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2149},
pages = {294--306},
publisher = {Springer},
year = {2001},
url = {https://doi.org/10.1007/3-540-44696-6\_23},
doi = {10.1007/3-540-44696-6\_23},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/HusonHLMRS01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/JagotaLP01,
author = {Arun K. Jagota and
Rune B. Lyngs{\o} and
Christian N. S. Pedersen},
editor = {Olivier Gascuel and
Bernard M. E. Moret},
title = {Comparing a Hidden Markov Model and a Stochastic Context-Free Grammar},
booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI}
2001, Aarhus, Denmark, August 28-31, 2001, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2149},
pages = {69--94},
publisher = {Springer},
year = {2001},
url = {https://doi.org/10.1007/3-540-44696-6\_6},
doi = {10.1007/3-540-44696-6\_6},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/JagotaLP01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MiklosT01,
author = {Istv{\'{a}}n Mikl{\'{o}}s and
Zolt{\'{a}}n Toroczkai},
editor = {Olivier Gascuel and
Bernard M. E. Moret},
title = {An Improved Model for Statistical Alignment},
booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI}
2001, Aarhus, Denmark, August 28-31, 2001, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2149},
pages = {1--10},
publisher = {Springer},
year = {2001},
url = {https://doi.org/10.1007/3-540-44696-6\_1},
doi = {10.1007/3-540-44696-6\_1},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/MiklosT01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/NakhlehRJSW01,
author = {Luay Nakhleh and
Usman Roshan and
Katherine St. John and
Jerry Sun and
Tandy J. Warnow},
editor = {Olivier Gascuel and
Bernard M. E. Moret},
title = {The Performance of Phylogenetic Methods on Trees of Bounded Diameter},
booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI}
2001, Aarhus, Denmark, August 28-31, 2001, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2149},
pages = {214--226},
publisher = {Springer},
year = {2001},
url = {https://doi.org/10.1007/3-540-44696-6\_17},
doi = {10.1007/3-540-44696-6\_17},
timestamp = {Mon, 26 Feb 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/NakhlehRJSW01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/OhsenZ01,
author = {Niklas von {\"{O}}hsen and
Ralf Zimmer},
editor = {Olivier Gascuel and
Bernard M. E. Moret},
title = {Improving Profile-Profile Alignments via Log Average Scoring},
booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI}
2001, Aarhus, Denmark, August 28-31, 2001, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2149},
pages = {11--26},
publisher = {Springer},
year = {2001},
url = {https://doi.org/10.1007/3-540-44696-6\_2},
doi = {10.1007/3-540-44696-6\_2},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/OhsenZ01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/PupkoSHSG01,
author = {Tal Pupko and
Roded Sharan and
Masami Hasegawa and
Ron Shamir and
Dan Graur},
editor = {Olivier Gascuel and
Bernard M. E. Moret},
title = {A Chemical-Distance-Based Test for Positive Darwinian Selection},
booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI}
2001, Aarhus, Denmark, August 28-31, 2001, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2149},
pages = {142--155},
publisher = {Springer},
year = {2001},
url = {https://doi.org/10.1007/3-540-44696-6\_11},
doi = {10.1007/3-540-44696-6\_11},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/PupkoSHSG01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SchiexCBM01,
author = {Thomas Schiex and
Patrick Chabrier and
Martin Bouchez and
Denis Milan},
editor = {Olivier Gascuel and
Bernard M. E. Moret},
title = {Boosting {EM} for Radiation Hybrid and Genetic Mapping},
booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI}
2001, Aarhus, Denmark, August 28-31, 2001, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2149},
pages = {41--51},
publisher = {Springer},
year = {2001},
url = {https://doi.org/10.1007/3-540-44696-6\_4},
doi = {10.1007/3-540-44696-6\_4},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SchiexCBM01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SiepelM01,
author = {Adam C. Siepel and
Bernard M. E. Moret},
editor = {Olivier Gascuel and
Bernard M. E. Moret},
title = {Finding an Optimal Inversion Median: Experimental Results},
booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI}
2001, Aarhus, Denmark, August 28-31, 2001, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2149},
pages = {189--203},
publisher = {Springer},
year = {2001},
url = {https://doi.org/10.1007/3-540-44696-6\_15},
doi = {10.1007/3-540-44696-6\_15},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/SiepelM01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/VeenWSMRH01,
author = {Peter J. van der Veen and
Lodewyk F. A. Wessels and
J. W. Slootstra and
R. H. Meloen and
Marcel J. T. Reinders and
Johannes Hellendoorn},
editor = {Olivier Gascuel and
Bernard M. E. Moret},
title = {Determination of Binding Amino Acids Based on Random Peptide Array
Screening Data},
booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI}
2001, Aarhus, Denmark, August 28-31, 2001, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2149},
pages = {264--277},
publisher = {Springer},
year = {2001},
url = {https://doi.org/10.1007/3-540-44696-6\_21},
doi = {10.1007/3-540-44696-6\_21},
timestamp = {Thu, 26 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/VeenWSMRH01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ViksnaG01,
author = {Juris Viksna and
David R. Gilbert},
editor = {Olivier Gascuel and
Bernard M. E. Moret},
title = {Pattern Matching and Pattern Discovery Algorithms for Protein Topologies},
booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI}
2001, Aarhus, Denmark, August 28-31, 2001, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2149},
pages = {98--111},
publisher = {Springer},
year = {2001},
url = {https://doi.org/10.1007/3-540-44696-6\_8},
doi = {10.1007/3-540-44696-6\_8},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ViksnaG01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Wang01,
author = {Li{-}San Wang},
editor = {Olivier Gascuel and
Bernard M. E. Moret},
title = {Exact-IEBP: {A} New Technique for Estimating Evolutionary Distances
between Whole Genomes},
booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI}
2001, Aarhus, Denmark, August 28-31, 2001, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2149},
pages = {175--188},
publisher = {Springer},
year = {2001},
url = {https://doi.org/10.1007/3-540-44696-6\_14},
doi = {10.1007/3-540-44696-6\_14},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Wang01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/wabi/2001,
editor = {Olivier Gascuel and
Bernard M. E. Moret},
title = {Algorithms in Bioinformatics, First International Workshop, {WABI}
2001, Aarhus, Denmark, August 28-31, 2001, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2149},
publisher = {Springer},
year = {2001},
url = {https://doi.org/10.1007/3-540-44696-6},
doi = {10.1007/3-540-44696-6},
isbn = {3-540-42516-0},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/2001.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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