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@inproceedings{DBLP:conf/recomb/ArastiTTM24,
author = {Shayesteh Arasti and
Puoya Tabaghi and
Yasamin Tabatabaee and
Siavash Mirarab},
editor = {Jian Ma},
title = {Optimal Tree Metric Matching Enables Phylogenomic Branch Length Estimation},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {462--465},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_53},
doi = {10.1007/978-1-0716-3989-4\_53},
timestamp = {Thu, 04 Jul 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ArastiTTM24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/AustinKPBUK24,
author = {George I. Austin and
Aya Brown Kav and
Heekuk Park and
Jana Biermann and
Anne{-}Catrin Uhlemann and
Tal Korem},
editor = {Jian Ma},
title = {Processing-Bias Correction with {DEBIAS-M} Improves Cross-Study Generalization
of Microbiome-Based Prediction Models},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {425--428},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_45},
doi = {10.1007/978-1-0716-3989-4\_45},
timestamp = {Tue, 18 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/AustinKPBUK24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/AzizpourBTS24,
author = {Ali Azizpour and
Advait Balaji and
Todd J. Treangen and
Santiago Segarra},
editor = {Jian Ma},
title = {GraSSRep: Graph-Based Self-supervised Learning for Repeat Detection
in Metagenomic Assembly},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {372--376},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_34},
doi = {10.1007/978-1-0716-3989-4\_34},
timestamp = {Tue, 04 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/AzizpourBTS24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BianCDLHCHSWZ24,
author = {Haiyang Bian and
Yixin Chen and
Xiaomin Dong and
Chen Li and
Minsheng Hao and
Sijie Chen and
Jinyi Hu and
Maosong Sun and
Lei Wei and
Xuegong Zhang},
editor = {Jian Ma},
title = {scMulan: {A} Multitask Generative Pre-Trained Language Model for Single-Cell
Analysis},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {479--482},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_57},
doi = {10.1007/978-1-0716-3989-4\_57},
timestamp = {Wed, 14 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BianCDLHCHSWZ24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BurchBDPD24,
author = {Myson C. Burch and
Aritra Bose and
Gregory Dexter and
Laxmi Parida and
Petros Drineas},
editor = {Jian Ma},
title = {MaSk-LMM: {A} Matrix Sketching Framework for Linear Mixed Models in
Association Studies},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {352--355},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_29},
doi = {10.1007/978-1-0716-3989-4\_29},
timestamp = {Tue, 04 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BurchBDPD24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChandraGJ24,
author = {Ghanshyam Chandra and
Daniel Gibney and
Chirag Jain},
editor = {Jian Ma},
title = {Haplotype-Aware Sequence Alignment to Pangenome Graphs},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {381--384},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_36},
doi = {10.1007/978-1-0716-3989-4\_36},
timestamp = {Tue, 04 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ChandraGJ24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChitraASMLSR24,
author = {Uthsav Chitra and
Brian J. Arnold and
Hirak Sarkar and
Cong Ma and
Sereno Lopez{-}Darwin and
Kohei Sanno and
Benjamin J. Raphael},
editor = {Jian Ma},
title = {Mapping the Topography of Spatial Gene Expression with Interpretable
Deep Learning},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {368--371},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_33},
doi = {10.1007/978-1-0716-3989-4\_33},
timestamp = {Tue, 04 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ChitraASMLSR24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DevkotaBHC24,
author = {Kapil Devkota and
Anselm Blumer and
Xiaozhe Hu and
Lenore Cowen},
editor = {Jian Ma},
title = {Fast Approximate IsoRank for Scalable Global Alignment of Biological
Networks},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {1--16},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_1},
doi = {10.1007/978-1-0716-3989-4\_1},
timestamp = {Thu, 04 Jul 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DevkotaBHC24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DuZS24,
author = {Yuxuan Du and
Wenxuan Zuo and
Fengzhu Sun},
editor = {Jian Ma},
title = {ImputeCC Enhances Integrative Hi-C-Based Metagenomic Binning Through
Constrained Random-Walk-Based Imputation},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {99--114},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_7},
doi = {10.1007/978-1-0716-3989-4\_7},
timestamp = {Tue, 18 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DuZS24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ElderHFK24,
author = {C. S. Elder and
Minh Hoang and
Mohsen Ferdosi and
Carl Kingsford},
editor = {Jian Ma},
title = {A Scalable Optimization Algorithm for Solving the Beltway and Turnpike
Problems with Uncertain Measurements},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {201--216},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_13},
doi = {10.1007/978-1-0716-3989-4\_13},
timestamp = {Thu, 04 Jul 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ElderHFK24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/FanLDL24,
author = {Yimin Fan and
Yu Li and
Jun Ding and
Yue Li},
editor = {Jian Ma},
title = {{GFETM:} Genome Foundation-Based Embedded Topic Model for scATAC-seq
Modeling},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {314--319},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_20},
doi = {10.1007/978-1-0716-3989-4\_20},
timestamp = {Tue, 04 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/FanLDL24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/FreestoneKNK24,
author = {Jack Freestone and
Lukas K{\"{a}}ll and
William Stafford Noble and
Uri Keich},
editor = {Jian Ma},
title = {Semi-supervised Learning While Controlling the {FDR} with an Application
to Tandem Mass Spectrometry Analysis},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {448--453},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_50},
doi = {10.1007/978-1-0716-3989-4\_50},
timestamp = {Tue, 18 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/FreestoneKNK24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/FuAAMS24,
author = {Boyang Fu and
Prateek Anand and
Aakarsh Anand and
Joel Mefford and
Sriram Sankararaman},
editor = {Jian Ma},
title = {A Scalable Adaptive Quadratic Kernel Method for Interpretable Epistasis
Analysis in Complex Traits},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {458--461},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_52},
doi = {10.1007/978-1-0716-3989-4\_52},
timestamp = {Tue, 04 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/FuAAMS24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GafurovVMB24,
author = {Askar Gafurov and
Tom{\'{a}}s Vinar and
Paul Medvedev and
Brona Brejov{\'{a}}},
editor = {Jian Ma},
title = {Efficient Analysis of Annotation Colocalization Accounting for Genomic
Contexts},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {38--53},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_3},
doi = {10.1007/978-1-0716-3989-4\_3},
timestamp = {Tue, 04 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/GafurovVMB24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GiurgiuWRGBKHHEKHRH24,
author = {Madalina Giurgiu and
Nadine Wittstruck and
Elias Rodriguez{-}Fos and
Roc{\'{\i}}o Chamorro Gonz{\'{a}}lez and
Lotte Br{\"{u}}ckner and
Annabell Krienelke{-}Szymansky and
Konstantin Helmsauer and
Anne Hartebrodt and
Philipp Euskirchen and
Richard P. Koche and
Kerstin Haase and
Knut Reinert and
Anton G. Henssen},
editor = {Jian Ma},
title = {Decoil: Reconstructing Extrachromosomal {DNA} Structural Heterogeneity
from Long-Read Sequencing Data},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {406--411},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_41},
doi = {10.1007/978-1-0716-3989-4\_41},
timestamp = {Tue, 18 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/GiurgiuWRGBKHHEKHRH24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GoldenbergMSSA24,
author = {Meir Goldenberg and
Loay Mualem and
Amit Shahar and
Sagi Snir and
Adi Akavia},
editor = {Jian Ma},
title = {Privacy Preserving Epigenetic PaceMaker: Stronger Privacy and Improved
Efficiency},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {412--416},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_42},
doi = {10.1007/978-1-0716-3989-4\_42},
timestamp = {Tue, 04 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/GoldenbergMSSA24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GrafSSC24,
author = {Ludwig Gr{\"{a}}f and
Daniel Sens and
Liubov Shilova and
Francesco Paolo Casale},
editor = {Jian Ma},
title = {Disease Risk Predictions with Differentiable Mendelian Randomization},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {385--389},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_37},
doi = {10.1007/978-1-0716-3989-4\_37},
timestamp = {Tue, 04 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/GrafSSC24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GuLLW24,
author = {Yichen Gu and
Jialin Liu and
Chen Li and
Joshua D. Welch},
editor = {Jian Ma},
title = {Mapping Cell Fate Transition in Space and Time},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {417--420},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_43},
doi = {10.1007/978-1-0716-3989-4\_43},
timestamp = {Tue, 04 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/GuLLW24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GuerinCZD24,
author = {Nathan Guerin and
Henry Childs and
Pei Zhou and
Bruce Randall Donald},
editor = {Jian Ma},
title = {DexDesign: {A} New OSPREY-Based Algorithm for Designing de novo D-peptide
Inhibitors},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {336--339},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_25},
doi = {10.1007/978-1-0716-3989-4\_25},
timestamp = {Tue, 04 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/GuerinCZD24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HalmosLGCDR24,
author = {Peter Halmos and
Xinhao Liu and
Julian Gold and
Feng Chen and
Li Ding and
Benjamin J. Raphael},
editor = {Jian Ma},
title = {DeST-OT: Alignment of Spatiotemporal Transcriptomics Data},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {434--437},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_47},
doi = {10.1007/978-1-0716-3989-4\_47},
timestamp = {Thu, 06 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HalmosLGCDR24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HongFMPBC24,
author = {Matthew M. Hong and
David Froelicher and
Ricky Magner and
Victoria Popic and
Bonnie Berger and
Hyunghoon Cho},
editor = {Jian Ma},
title = {Secure Discovery of Genetic Relatives Across Large-Scale and Distributed
Genomic Datasets},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {308--313},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_19},
doi = {10.1007/978-1-0716-3989-4\_19},
timestamp = {Tue, 04 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HongFMPBC24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HuangLHKRR24,
author = {Kexin Huang and
Romain Lopez and
Jan{-}Christian H{\"{u}}tter and
Takamasa Kudo and
Antonio Rios and
Aviv Regev},
editor = {Jian Ma},
title = {Sequential Optimal Experimental Design of Perturbation Screens Guided
by Multi-modal Priors},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {17--37},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_2},
doi = {10.1007/978-1-0716-3989-4\_2},
timestamp = {Tue, 04 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HuangLHKRR24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/IovinoTY24,
author = {Benjamin Giovanni Iovino and
Haixu Tang and
Yuzhen Ye},
editor = {Jian Ma},
title = {Protein Domain Embeddings for Fast and Accurate Similarity Search},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {421--424},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_44},
doi = {10.1007/978-1-0716-3989-4\_44},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/IovinoTY24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/JacobsonS24,
author = {Shani Jacobson and
Roded Sharan},
editor = {Jian Ma},
title = {An Integer Programming Framework for Identifying Stable Components
in Asynchronous Boolean Networks},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {86--98},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_6},
doi = {10.1007/978-1-0716-3989-4\_6},
timestamp = {Tue, 04 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/JacobsonS24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/JeongPLS24,
author = {Moonseong Jeong and
Ali Pazokitoroudi and
Zhengtong Liu and
Sriram Sankararaman},
editor = {Jian Ma},
title = {Scalable Summary Statistics-Based Heritability Estimation Method with
Individual Genotype Level Accuracy},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {475--478},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_56},
doi = {10.1007/978-1-0716-3989-4\_56},
timestamp = {Tue, 04 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/JeongPLS24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KhwajaSH24,
author = {Emaad Khwaja and
Yun S. Song and
Bo Huang},
editor = {Jian Ma},
title = {{CELL-E:} {A} Text-to-Image Transformer for Protein Image Prediction},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {185--200},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_12},
doi = {10.1007/978-1-0716-3989-4\_12},
timestamp = {Tue, 18 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KhwajaSH24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KriegerK24,
author = {Spencer Krieger and
John D. Kececioglu},
editor = {Jian Ma},
title = {Computing Robust Optimal Factories in Metabolic Reaction Networks},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {253--269},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_16},
doi = {10.1007/978-1-0716-3989-4\_16},
timestamp = {Tue, 04 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KriegerK24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LalGBE24,
author = {Avantika Lal and
David Garfield and
Tommaso Biancalani and
G{\"{o}}kcen Eraslan},
editor = {Jian Ma},
title = {regLM: Designing Realistic Regulatory {DNA} with Autoregressive Language
Models},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {332--335},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_24},
doi = {10.1007/978-1-0716-3989-4\_24},
timestamp = {Tue, 18 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LalGBE24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LeightonY24,
author = {Alexander T. Leighton and
Yun William Yu},
editor = {Jian Ma},
title = {Secure Federated Boolean Count Queries Using Fully-Homomorphic Cryptography},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {54--67},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_4},
doi = {10.1007/978-1-0716-3989-4\_4},
timestamp = {Tue, 18 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LeightonY24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LiDCY24,
author = {Lechuan Li and
Ruth Dannenfelser and
Charlie Cruz and
Vicky Yao},
editor = {Jian Ma},
title = {Enhancing Gene Set Analysis in Embedding Spaces: {A} Novel Best-Match
Approach},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {396--399},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_39},
doi = {10.1007/978-1-0716-3989-4\_39},
timestamp = {Tue, 04 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LiDCY24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LiZSZ24,
author = {Han Li and
Jianyang Zeng and
Michael P. Snyder and
Sai Zhang},
editor = {Jian Ma},
title = {PRS-Net: Interpretable Polygenic Risk Scores via Geometric Learning},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {377--380},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_35},
doi = {10.1007/978-1-0716-3989-4\_35},
timestamp = {Tue, 18 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LiZSZ24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MaBLCDR24,
author = {Cong Ma and
Metin Balaban and
Jingxian Liu and
Siqi Chen and
Li Ding and
Benjamin J. Raphael},
editor = {Jian Ma},
title = {Inferring Allele-Specific Copy Number Aberrations and Tumor Phylogeography
from Spatially Resolved Transcriptomics},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {466--469},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_54},
doi = {10.1007/978-1-0716-3989-4\_54},
timestamp = {Tue, 04 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MaBLCDR24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MaiCR24,
author = {Uyen Mai and
Gillian Chu and
Benjamin J. Raphael},
editor = {Jian Ma},
title = {Maximum Likelihood Inference of Time-Scaled Cell Lineage Trees with
Mixed-Type Missing Data},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {360--363},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_31},
doi = {10.1007/978-1-0716-3989-4\_31},
timestamp = {Tue, 04 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MaiCR24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MelinZML24,
author = {Harald Melin and
Vittorio Zampinetti and
Andrew McPherson and
Jens Lagergren},
editor = {Jian Ma},
title = {VICTree - {A} Variational Inference Method for Clonal Tree Reconstruction},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {429--433},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_46},
doi = {10.1007/978-1-0716-3989-4\_46},
timestamp = {Thu, 06 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MelinZML24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MohebbiZMCS24,
author = {Fatemeh Mohebbi and
Alexander Zelikovsky and
Serghei Mangul and
Gerardo Chowell and
Pavel Skums},
editor = {Jian Ma},
title = {Community Structure and Temporal Dynamics of Viral Epistatic Networks
Allow for Early Detection of Emerging Variants with Altered Phenotypes},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {356--359},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_30},
doi = {10.1007/978-1-0716-3989-4\_30},
timestamp = {Tue, 18 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MohebbiZMCS24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ParkMBMGLHKWA24,
author = {Cameron Park and
Shouvik Mani and
Nicolas Beltran{-}Velez and
Katie Maurer and
Satyen Gohil and
Shuqiang Li and
Teddy Huang and
David A. Knowles and
Catherine J. Wu and
Elham Azizi},
editor = {Jian Ma},
title = {{DIISCO:} {A} Bayesian Framework for Inferring Dynamic Intercellular
Interactions from Time-Series Single-Cell Data},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {390--395},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_38},
doi = {10.1007/978-1-0716-3989-4\_38},
timestamp = {Tue, 04 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ParkMBMGLHKWA24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PellizzoniOB24,
author = {Paolo Pellizzoni and
Carlos G. Oliver and
Karsten M. Borgwardt},
editor = {Jian Ma},
title = {Structure- and Function-Aware Substitution Matrices via Learnable
Graph Matching},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {288--307},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_18},
doi = {10.1007/978-1-0716-3989-4\_18},
timestamp = {Tue, 04 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PellizzoniOB24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PibiriFP24,
author = {Giulio Ermanno Pibiri and
Jason Fan and
Rob Patro},
editor = {Jian Ma},
title = {Meta-colored Compacted de Bruijn Graphs},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {131--146},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_9},
doi = {10.1007/978-1-0716-3989-4\_9},
timestamp = {Tue, 18 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PibiriFP24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/RendersDRF24,
author = {Luca Renders and
Lore Depuydt and
Sven Rahmann and
Jan Fostier},
editor = {Jian Ma},
title = {Automated Design of Efficient Search Schemes for Lossless Approximate
Pattern Matching},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {164--184},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_11},
doi = {10.1007/978-1-0716-3989-4\_11},
timestamp = {Tue, 18 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/RendersDRF24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SahaFMGFSGDLQ24,
author = {Enakshi Saha and
Viola Fanfani and
Panagiotis Mandros and
Marouen Ben Guebila and
Jonas Fischer and
Katherine H. Shutta and
Kimberly Glass and
Dawn L. DeMeo and
Camila Miranda Lopes{-}Ramos and
John Quackenbush},
editor = {Jian Ma},
title = {{BONOBO:} Bayesian Optimized Sample-Specific Networks Obtained by
Omics Data},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {328--331},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_23},
doi = {10.1007/978-1-0716-3989-4\_23},
timestamp = {Tue, 04 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SahaFMGFSGDLQ24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SapciM24,
author = {Ali Osman Berk Sapci and
Siavash Mirarab},
editor = {Jian Ma},
title = {Memory-Bound and Taxonomy-Aware K-Mer Selection for Ultra-Large Reference
Libraries},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {340--343},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_26},
doi = {10.1007/978-1-0716-3989-4\_26},
timestamp = {Tue, 04 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SapciM24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SchillKLHVRGSB24,
author = {Rudolf Schill and
Maren Klever and
Andreas L{\"{o}}sch and
Y. Linda Hu and
Stefan Vocht and
Kevin Rupp and
Lars Grasedyck and
Rainer Spang and
Niko Beerenwinkel},
editor = {Jian Ma},
title = {Overcoming Observation Bias for Cancer Progression Modeling},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {217--234},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_14},
doi = {10.1007/978-1-0716-3989-4\_14},
timestamp = {Tue, 04 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SchillKLHVRGSB24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SchrodLLSWSGSBZOQA24,
author = {Stefan Schrod and
Niklas L{\"{u}}ck and
Robert Lohmayer and
Stefan Solbrig and
Tina Wipfler and
Katherine H. Shutta and
Marouen Ben Guebila and
Andreas Sch{\"{a}}fer and
Tim Bei{\ss}barth and
Helena U. Zacharias and
Peter J. Oefner and
John Quackenbush and
Michael Altenbuchinger},
editor = {Jian Ma},
title = {SpaCeNet: Spatial Cellular Networks from Omics Data},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {344--347},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_27},
doi = {10.1007/978-1-0716-3989-4\_27},
timestamp = {Thu, 04 Jul 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SchrodLLSWSGSBZOQA24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ShenYQZK24,
author = {Yihang Shen and
Lingge Yu and
Yutong Qiu and
Tianyu Zhang and
Carl Kingsford},
editor = {Jian Ma},
title = {Graph-Based Genome Inference from Hi-C Data},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {115--130},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_8},
doi = {10.1007/978-1-0716-3989-4\_8},
timestamp = {Tue, 04 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ShenYQZK24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SongL24,
author = {Li Song and
Ben Langmead},
editor = {Jian Ma},
title = {Centrifuger: Lossless Compression of Microbial Genomes for Efficient
and Accurate Metagenomic Sequence Classification},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {324--327},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_22},
doi = {10.1007/978-1-0716-3989-4\_22},
timestamp = {Tue, 18 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SongL24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SteachVHZIHPK24,
author = {Holly R. Steach and
Siddharth Viswanath and
Yixuan He and
Xitong Zhang and
Natalia Ivanova and
Matthew J. Hirn and
Michael Perlmutter and
Smita Krishnaswamy},
editor = {Jian Ma},
title = {Inferring Metabolic States from Single Cell Transcriptomic Data via
Geometric Deep Learning},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {235--252},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_15},
doi = {10.1007/978-1-0716-3989-4\_15},
timestamp = {Tue, 04 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SteachVHZIHPK24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WeberRRQEK24,
author = {Leah L. Weber and
Derek Reiman and
Mrinmoy Saha Roddur and
Yuanyuan Qi and
Mohammed El{-}Kebir and
Aly A. Khan},
editor = {Jian Ma},
title = {{TRIBAL:} Tree Inference of {B} Cell Clonal Lineages},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {364--367},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_32},
doi = {10.1007/978-1-0716-3989-4\_32},
timestamp = {Thu, 04 Jul 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WeberRRQEK24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WuJRRSSM24,
author = {Chih Hao Wu and
Suraj Joshi and
Welles Robinson and
Paul F. Robbins and
Russell Schwartz and
S{\"{u}}leyman Cenk Sahinalp and
Salem Malikic},
editor = {Jian Ma},
title = {Determining Optimal Placement of Copy Number Aberration Impacted Single
Nucleotide Variants in a Tumor Progression History},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {438--443},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_48},
doi = {10.1007/978-1-0716-3989-4\_48},
timestamp = {Tue, 04 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WuJRRSSM24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/YacoubGLBP24,
author = {Taher Yacoub and
Roy Gonz{\'{a}}lez{-}Alem{\'{a}}n and
Fabrice Leclerc and
Isaure Chauvot de Beauch{\^{e}}ne and
Yann Ponty},
editor = {Jian Ma},
title = {Color Coding for the Fragment-Based Docking, Design and Equilibrium
Statistics of Protein-Binding ssRNAs},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {147--163},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_10},
doi = {10.1007/978-1-0716-3989-4\_10},
timestamp = {Thu, 04 Jul 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/YacoubGLBP24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/YalabadiYYTAG24,
author = {Ali Khodabandeh Yalabadi and
Mehdi Yazdani{-}Jahromi and
Niloofar Yousefi and
Aida Tayebi and
Sina Abdidizaji and
{\"{O}}zlem {\"{O}}zmen Garibay},
editor = {Jian Ma},
title = {FragXsiteDTI: Revealing Responsible Segments in Drug-Target Interaction
with Transformer-Driven Interpretation},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {68--85},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_5},
doi = {10.1007/978-1-0716-3989-4\_5},
timestamp = {Tue, 04 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/YalabadiYYTAG24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/YangYM24,
author = {Jianyu Yang and
Kuangyu Yen and
Shaun Mahony},
editor = {Jian Ma},
title = {{SEM:} Size-Based Expectation Maximization for Characterizing Nucleosome
Positions and Subtypes},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {320--323},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_21},
doi = {10.1007/978-1-0716-3989-4\_21},
timestamp = {Tue, 04 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/YangYM24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZahinSZS24,
author = {Tasfia Zahin and
Qian Shi and
Xiaofei Carl Zang and
Mingfu Shao},
editor = {Jian Ma},
title = {Accurate Assembly of Circular RNAs with {TERRACE}},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {444--447},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_49},
doi = {10.1007/978-1-0716-3989-4\_49},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZahinSZS24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZengWJX24,
author = {Shuai Zeng and
Duolin Wang and
Lei Jiang and
Dong Xu},
editor = {Jian Ma},
title = {Prompt-Based Learning on Large Protein Language Models Improves Signal
Peptide Prediction},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {400--405},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_40},
doi = {10.1007/978-1-0716-3989-4\_40},
timestamp = {Tue, 18 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZengWJX24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhangWWW24,
author = {Ziting Zhang and
Wenxu Wu and
Lei Wei and
Xiaowo Wang},
editor = {Jian Ma},
title = {Discovering and Overcoming the Bias in Neoantigen Identification by
Unified Machine Learning Models},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {348--351},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_28},
doi = {10.1007/978-1-0716-3989-4\_28},
timestamp = {Tue, 04 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZhangWWW24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhaoZL24,
author = {Junming Zhao and
Chao Zhang and
Yunan Luo},
editor = {Jian Ma},
title = {Contrastive Fitness Learning: Reprogramming Protein Language Models
for Low-N Learning of Protein Fitness Landscape},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {470--474},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_55},
doi = {10.1007/978-1-0716-3989-4\_55},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZhaoZL24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhouTMH24,
author = {Tianshuo Zhou and
Wei Yu Tang and
David H. Mathews and
Liang Huang},
editor = {Jian Ma},
title = {Undesignable {RNA} Structure Identification via Rival Structure Generation
and Structure Decomposition},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {270--287},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_17},
doi = {10.1007/978-1-0716-3989-4\_17},
timestamp = {Thu, 04 Jul 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZhouTMH24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhuJLBYHWZMCB24,
author = {Kaiyuan Zhu and
Matthew G. Jones and
Jens Luebeck and
Xinxin Bu and
Hyerim Yi and
King L. Hung and
Ivy Tsz{-}Lo Wong and
Shu Zhang and
Paul S. Mischel and
Howard Y. Chang and
Vineet Bafna},
editor = {Jian Ma},
title = {CoRAL Accurately Resolves Extrachromosomal {DNA} Genome Structures
with Long-Read Sequencing},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {454--457},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_51},
doi = {10.1007/978-1-0716-3989-4\_51},
timestamp = {Mon, 26 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZhuJLBYHWZMCB24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/recomb/2024,
editor = {Jian Ma},
title = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4},
doi = {10.1007/978-1-0716-3989-4},
isbn = {978-1-0716-3988-7},
timestamp = {Tue, 04 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/2024.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChandraJ23,
author = {Ghanshyam Chandra and
Chirag Jain},
editor = {Haixu Tang},
title = {Sequence to Graph Alignment Using Gap-Sensitive Co-linear Chaining},
booktitle = {Research in Computational Molecular Biology - 27th Annual International
Conference, {RECOMB} 2023, Istanbul, Turkey, April 16-19, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13976},
pages = {58--73},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-29119-7\_4},
doi = {10.1007/978-3-031-29119-7\_4},
timestamp = {Sat, 13 May 2023 01:07:17 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ChandraJ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChenMGCCN23,
author = {Ziqi Chen and
Martin Renqiang Min and
Hongyu Guo and
Chao Cheng and
Trevor Clancy and
Xia Ning},
editor = {Haixu Tang},
title = {T-Cell Receptor Optimization with Reinforcement Learning and Mutation
Polices for Precision Immunotherapy},
booktitle = {Research in Computational Molecular Biology - 27th Annual International
Conference, {RECOMB} 2023, Istanbul, Turkey, April 16-19, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13976},
pages = {174--191},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-29119-7\_11},
doi = {10.1007/978-3-031-29119-7\_11},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ChenMGCCN23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DuXYYS23,
author = {Bing{-}Xue Du and
Yi Xu and
Siu{-}Ming Yiu and
Hui Yu and
Jian{-}Yu Shi},
editor = {Haixu Tang},
title = {{MTGL-ADMET:} {A} Novel Multi-task Graph Learning Framework for {ADMET}
Prediction Enhanced by Status-Theory and Maximum Flow},
booktitle = {Research in Computational Molecular Biology - 27th Annual International
Conference, {RECOMB} 2023, Istanbul, Turkey, April 16-19, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13976},
pages = {85--103},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-29119-7\_6},
doi = {10.1007/978-3-031-29119-7\_6},
timestamp = {Tue, 02 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DuXYYS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/FanKPP23,
author = {Jason Fan and
Jamshed Khan and
Giulio Ermanno Pibiri and
Rob Patro},
editor = {Haixu Tang},
title = {Spectrum Preserving Tilings Enable Sparse and Modular Reference Indexing},
booktitle = {Research in Computational Molecular Biology - 27th Annual International
Conference, {RECOMB} 2023, Istanbul, Turkey, April 16-19, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13976},
pages = {21--40},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-29119-7\_2},
doi = {10.1007/978-3-031-29119-7\_2},
timestamp = {Sat, 13 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/FanKPP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KriegerK23,
author = {Spencer Krieger and
John D. Kececioglu},
editor = {Haixu Tang},
title = {Computing Shortest Hyperpaths for Pathway Inference in Cellular Reaction
Networks},
booktitle = {Research in Computational Molecular Biology - 27th Annual International
Conference, {RECOMB} 2023, Istanbul, Turkey, April 16-19, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13976},
pages = {155--173},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-29119-7\_10},
doi = {10.1007/978-3-031-29119-7\_10},
timestamp = {Tue, 02 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KriegerK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LuoL23,
author = {Runpeng Luo and
Yu Lin},
editor = {Haixu Tang},
title = {VStrains: De Novo Reconstruction of Viral Strains via Iterative Path
Extraction from Assembly Graphs},
booktitle = {Research in Computational Molecular Biology - 27th Annual International
Conference, {RECOMB} 2023, Istanbul, Turkey, April 16-19, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13976},
pages = {3--20},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-29119-7\_1},
doi = {10.1007/978-3-031-29119-7\_1},
timestamp = {Wed, 17 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LuoL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MallickB23,
author = {Shikha Mallick and
Sahely Bhadra},
editor = {Haixu Tang},
title = {{CDGCN:} Conditional de novo Drug Generative Model Using Graph Convolution
Networks},
booktitle = {Research in Computational Molecular Biology - 27th Annual International
Conference, {RECOMB} 2023, Istanbul, Turkey, April 16-19, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13976},
pages = {104--119},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-29119-7\_7},
doi = {10.1007/978-3-031-29119-7\_7},
timestamp = {Wed, 17 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MallickB23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MourraguiLNWRW23,
author = {Soufiane Mourragui and
Marco Loog and
Mirrelijn M. van Nee and
Mark A. van de Wiel and
Marcel J. T. Reinders and
Lodewyk F. A. Wessels},
editor = {Haixu Tang},
title = {Percolate: An Exponential Family {JIVE} Model to Design DNA-Based
Predictors of Drug Response},
booktitle = {Research in Computational Molecular Biology - 27th Annual International
Conference, {RECOMB} 2023, Istanbul, Turkey, April 16-19, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13976},
pages = {120--138},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-29119-7\_8},
doi = {10.1007/978-3-031-29119-7\_8},
timestamp = {Sat, 13 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MourraguiLNWRW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/TabatabaeeRW23,
author = {Yasamin Tabatabaee and
S{\'{e}}bastien Roch and
Tandy J. Warnow},
editor = {Haixu Tang},
title = {Statistically Consistent Rooting of Species Trees Under the Multispecies
Coalescent Model},
booktitle = {Research in Computational Molecular Biology - 27th Annual International
Conference, {RECOMB} 2023, Istanbul, Turkey, April 16-19, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13976},
pages = {41--57},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-29119-7\_3},
doi = {10.1007/978-3-031-29119-7\_3},
timestamp = {Wed, 17 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/TabatabaeeRW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhengFWCHWH23,
author = {Weizhong Zheng and
John H. C. Fong and
Yuk Kei Wan and
Athena H. Y. Chu and
Yuanhua Huang and
Alan S. L. Wong and
Joshua W. K. Ho},
editor = {Haixu Tang},
title = {Translation Rate Prediction and Regulatory Motif Discovery with Multi-task
Learning},
booktitle = {Research in Computational Molecular Biology - 27th Annual International
Conference, {RECOMB} 2023, Istanbul, Turkey, April 16-19, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13976},
pages = {139--154},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-29119-7\_9},
doi = {10.1007/978-3-031-29119-7\_9},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZhengFWCHWH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhouLT23,
author = {Xiaogen Zhou and
Zhiqiang Li and
Tong Tong},
editor = {Haixu Tang},
title = {DM-Net: {A} Dual-Model Network for Automated Biomedical Image Diagnosis},
booktitle = {Research in Computational Molecular Biology - 27th Annual International
Conference, {RECOMB} 2023, Istanbul, Turkey, April 16-19, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13976},
pages = {74--84},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-29119-7\_5},
doi = {10.1007/978-3-031-29119-7\_5},
timestamp = {Tue, 02 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZhouLT23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/recomb/2023,
editor = {Haixu Tang},
title = {Research in Computational Molecular Biology - 27th Annual International
Conference, {RECOMB} 2023, Istanbul, Turkey, April 16-19, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13976},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-29119-7},
doi = {10.1007/978-3-031-29119-7},
isbn = {978-3-031-29118-0},
timestamp = {Sat, 13 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/2023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/DemetciSSNS22,
author = {Pinar Demetci and
Rebecca Santorella and
Bj{\"{o}}rn Sandstede and
William Stafford Noble and
Ritambhara Singh},
title = {{SCOT:} Single-Cell Multi-Omics Alignment with Optimal Transport},
journal = {J. Comput. Biol.},
volume = {29},
number = {1},
pages = {3--18},
year = {2022},
url = {https://doi.org/10.1089/cmb.2021.0446},
doi = {10.1089/CMB.2021.0446},
timestamp = {Tue, 15 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/DemetciSSNS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/DemetciSSNS22a,
author = {Pinar Demetci and
Rebecca Santorella and
Bj{\"{o}}rn Sandstede and
William Stafford Noble and
Ritambhara Singh},
title = {Single-Cell Multiomics Integration by {SCOT}},
journal = {J. Comput. Biol.},
volume = {29},
number = {1},
pages = {19--22},
year = {2022},
url = {https://doi.org/10.1089/cmb.2021.0477},
doi = {10.1089/CMB.2021.0477},
timestamp = {Tue, 15 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/DemetciSSNS22a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/FranzeseFSL22,
author = {Nicholas Franzese and
Jason Fan and
Roded Sharan and
Mark D. M. Leiserson},
title = {ScalpelSig Designs Targeted Genomic Panels from Data to Detect Activity
of Mutational Signatures},
journal = {J. Comput. Biol.},
volume = {29},
number = {1},
pages = {56--73},
year = {2022},
url = {https://doi.org/10.1089/cmb.2021.0453},
doi = {10.1089/CMB.2021.0453},
timestamp = {Tue, 15 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/FranzeseFSL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/NasserES22,
author = {Rami Nasser and
Yonina C. Eldar and
Roded Sharan},
title = {Deep Unfolding for Non-Negative Matrix Factorization with Application
to Mutational Signature Analysis},
journal = {J. Comput. Biol.},
volume = {29},
number = {1},
pages = {45--55},
year = {2022},
url = {https://doi.org/10.1089/cmb.2021.0438},
doi = {10.1089/CMB.2021.0438},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/NasserES22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Peng22,
author = {Jian Peng},
title = {{RECOMB} 2021 Special Issue},
journal = {J. Comput. Biol.},
volume = {29},
number = {1},
pages = {2},
year = {2022},
url = {https://doi.org/10.1089/cmb.2021.29050.jp},
doi = {10.1089/CMB.2021.29050.JP},
timestamp = {Mon, 23 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/Peng22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ShrivastavaZSA22,
author = {Harsh Shrivastava and
Xiuwei Zhang and
Le Song and
Srinivas Aluru},
title = {GRNUlar: {A} Deep Learning Framework for Recovering Single-Cell Gene
Regulatory Networks},
journal = {J. Comput. Biol.},
volume = {29},
number = {1},
pages = {27--44},
year = {2022},
url = {https://doi.org/10.1089/cmb.2021.0437},
doi = {10.1089/CMB.2021.0437},
timestamp = {Tue, 15 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ShrivastavaZSA22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SunSLL22,
author = {Tianyi Sun and
Dongyuan Song and
Wei Vivian Li and
Jingyi Jessica Li},
title = {Simulating Single-Cell Gene Expression Count Data with Preserved Gene
Correlations by scDesign2},
journal = {J. Comput. Biol.},
volume = {29},
number = {1},
pages = {23--26},
year = {2022},
url = {https://doi.org/10.1089/cmb.2021.0440},
doi = {10.1089/CMB.2021.0440},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/SunSLL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/X22,
title = {Acknowledgment of Reviewers 2021},
journal = {J. Comput. Biol.},
volume = {29},
number = {1},
pages = {1},
year = {2022},
url = {https://doi.org/10.1089/cmb.2022.29053.ack},
doi = {10.1089/CMB.2022.29053.ACK},
timestamp = {Wed, 23 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/X22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ZahariasGW22,
author = {Paul Zaharias and
Martin Grosshauser and
Tandy J. Warnow},
title = {Re-evaluating Deep Neural Networks for Phylogeny Estimation: The Issue
of Taxon Sampling},
journal = {J. Comput. Biol.},
volume = {29},
number = {1},
pages = {74--89},
year = {2022},
url = {https://doi.org/10.1089/cmb.2021.0383},
doi = {10.1089/CMB.2021.0383},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/ZahariasGW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/AnCDS22,
author = {Ulzee An and
Na Cai and
Andy Dahl and
Sriram Sankararaman},
editor = {Itsik Pe'er},
title = {AutoComplete: Deep Learning-Based Phenotype Imputation for Large-Scale
Biomedical Data},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {385--386},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_38},
doi = {10.1007/978-3-031-04749-7\_38},
timestamp = {Wed, 18 May 2022 18:07:47 +0200},
biburl = {https://dblp.org/rec/conf/recomb/AnCDS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChitraPR22,
author = {Uthsav Chitra and
Tae Yoon Park and
Benjamin J. Raphael},
editor = {Itsik Pe'er},
title = {NetMix2: Unifying Network Propagation and Altered Subnetworks},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {193--208},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_12},
doi = {10.1007/978-3-031-04749-7\_12},
timestamp = {Wed, 18 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ChitraPR22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChowdhuryBZWD22,
author = {Agniva Chowdhury and
Aritra Bose and
Samson Zhou and
David P. Woodruff and
Petros Drineas},
editor = {Itsik Pe'er},
title = {A Fast, Provably Accurate Approximation Algorithm for Sparse Principal
Component Analysis Reveals Human Genetic Variation Across the World},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {86--106},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_6},
doi = {10.1007/978-3-031-04749-7\_6},
timestamp = {Thu, 02 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ChowdhuryBZWD22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DaiSHBEG22,
author = {Zheng Dai and
Sachit D. Saksena and
Geraldine Horny and
Christine Banholzer and
Stefan Ewert and
David K. Gifford},
editor = {Itsik Pe'er},
title = {Ultra High Diversity Factorizable Libraries for Efficient Therapeutic
Discovery},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {390--392},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_40},
doi = {10.1007/978-3-031-04749-7\_40},
timestamp = {Thu, 02 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DaiSHBEG22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DangLWSB22,
author = {Meihua Dang and
Anji Liu and
Xinzhu Wei and
Sriram Sankararaman and
Guy Van den Broeck},
editor = {Itsik Pe'er},
title = {Tractable and Expressive Generative Models of Genetic Variation Data},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {356--357},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_26},
doi = {10.1007/978-3-031-04749-7\_26},
timestamp = {Wed, 18 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DangLWSB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DemetciSSS22,
author = {Pinar Demetci and
Rebecca Santorella and
Bj{\"{o}}rn Sandstede and
Ritambhara Singh},
editor = {Itsik Pe'er},
title = {Unsupervised Integration of Single-Cell Multi-omics Datasets with
Disproportionate Cell-Type Representation},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {3--19},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_1},
doi = {10.1007/978-3-031-04749-7\_1},
timestamp = {Thu, 02 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DemetciSSS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DiasWMT22,
author = {Fernando H. C. Dias and
Lucia Williams and
Brendan Mumey and
Alexandru I. Tomescu},
editor = {Itsik Pe'er},
title = {Fast, Flexible, and Exact Minimum Flow Decompositions via {ILP}},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {230--245},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_14},
doi = {10.1007/978-3-031-04749-7\_14},
timestamp = {Thu, 02 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DiasWMT22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/FerreiraKB22,
author = {Pedro F. Ferreira and
Jack Kuipers and
Niko Beerenwinkel},
editor = {Itsik Pe'er},
title = {Mapping Single-Cell Transcriptomes to Copy Number Evolutionary Trees},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {380--381},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_36},
doi = {10.1007/978-3-031-04749-7\_36},
timestamp = {Wed, 18 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/FerreiraKB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/FordHRXLOZWMBXS22,
author = {Michael Ford and
Ananth Hari and
Oscar Rodriguez and
Junyan Xu and
Justin Lack and
Cihan Oguz and
Yu Zhang and
Sarah Weber and
Mary Magliocco and
Jason Barnett and
Sandhya Xirasagar and
Smilee Samuel and
Luisa Imberti and
Paolo Bonfanti and
Andrea Biondi and
Clifton L. Dalgard and
Stephen J. Chanock and
Lindsey Rosen and
Steven Holland and
Helen Su and
Luigi Notarangelo and
Uzi Vishkin and
Corey Watson and
S{\"{u}}leyman Cenk Sahinalp},
editor = {Itsik Pe'er},
title = {ImmunoTyper-SR: {A} Novel Computational Approach for Genotyping Immunoglobulin
Heavy Chain Variable Genes Using Short Read Data},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {382--384},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_37},
doi = {10.1007/978-3-031-04749-7\_37},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/FordHRXLOZWMBXS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GanjdaneshZCH22,
author = {Alireza Ganjdanesh and
Jipeng Zhang and
Wei Chen and
Heng Huang},
editor = {Itsik Pe'er},
title = {Multi-modal Genotype and Phenotype Mutual Learning to Enhance Single-Modal
Input Based Longitudinal Outcome Prediction},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {209--229},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_13},
doi = {10.1007/978-3-031-04749-7\_13},
timestamp = {Thu, 09 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/GanjdaneshZCH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GibneyTA22,
author = {Daniel Gibney and
Sharma V. Thankachan and
Srinivas Aluru},
editor = {Itsik Pe'er},
title = {The Complexity of Approximate Pattern Matching on de Bruijn Graphs},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {263--278},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_16},
doi = {10.1007/978-3-031-04749-7\_16},
timestamp = {Wed, 18 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/GibneyTA22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GuerinKD22,
author = {Nathan Guerin and
Teresa Kaserer and
Bruce Randall Donald},
editor = {Itsik Pe'er},
title = {Resistor: An Algorithm for Predicting Resistance Mutations Using Pareto
Optimization over Multistate Protein Design and Mutational Signatures},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {387--389},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_39},
doi = {10.1007/978-3-031-04749-7\_39},
timestamp = {Sun, 01 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/GuerinKD22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HillR22,
author = {Max Hill and
Sebastien Roch},
editor = {Itsik Pe'er},
title = {On the Effect of Intralocus Recombination on Triplet-Based Species
Tree Estimation},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {143--158},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_9},
doi = {10.1007/978-3-031-04749-7\_9},
timestamp = {Thu, 02 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HillR22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HoangZK22,
author = {Minh Hoang and
Hongyu Zheng and
Carl Kingsford},
editor = {Itsik Pe'er},
title = {DeepMinimizer: {A} Differentiable Framework for Optimizing Sequence-Specific
Minimizer Schemes},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {52--69},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_4},
doi = {10.1007/978-3-031-04749-7\_4},
timestamp = {Wed, 22 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HoangZK22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HuaGDQDBZT22,
author = {Dunming Hua and
Ming Gu and
Yanyi Du and
Li Qi and
Xiangjun Du and
Zhidong Bai and
Xiaopeng Zhu and
Dechao Tian},
editor = {Itsik Pe'er},
title = {DiffDomain Enables Identification of Structurally Reorganized Topologically
Associating Domains},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {302--303},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_20},
doi = {10.1007/978-3-031-04749-7\_20},
timestamp = {Wed, 18 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HuaGDQDBZT22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/IvanovBV22,
author = {Pesho Ivanov and
Benjamin Bichsel and
Martin T. Vechev},
editor = {Itsik Pe'er},
title = {Fast and Optimal Sequence-to-Graph Alignment Guided by Seeds},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {306--325},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_22},
doi = {10.1007/978-3-031-04749-7\_22},
timestamp = {Wed, 18 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/IvanovBV22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/JainGT22,
author = {Chirag Jain and
Daniel Gibney and
Sharma V. Thankachan},
editor = {Itsik Pe'er},
title = {Co-linear Chaining with Overlaps and Gap Costs},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {246--262},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_15},
doi = {10.1007/978-3-031-04749-7\_15},
timestamp = {Wed, 18 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/JainGT22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KarasikovMRK22,
author = {Mikhail Karasikov and
Harun Mustafa and
Gunnar R{\"{a}}tsch and
Andr{\'{e}} Kahles},
editor = {Itsik Pe'er},
title = {Lossless Indexing with Counting de Bruijn Graphs},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {374--376},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_34},
doi = {10.1007/978-3-031-04749-7\_34},
timestamp = {Mon, 13 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KarasikovMRK22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KhanKCWT22,
author = {Shahbaz Khan and
Milla Kortelainen and
Manuel C{\'{a}}ceres and
Lucia Williams and
Alexandru I. Tomescu},
editor = {Itsik Pe'er},
title = {Safety and Completeness in Flow Decompositions for {RNA} Assembly},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {177--192},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_11},
doi = {10.1007/978-3-031-04749-7\_11},
timestamp = {Mon, 13 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KhanKCWT22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LiDB22,
author = {Dongshunyi Li and
Jun Ding and
Ziv Bar{-}Joseph},
editor = {Itsik Pe'er},
title = {Unsupervised Cell Functional Annotation for Single-Cell RNA-Seq},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {349--352},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_24},
doi = {10.1007/978-3-031-04749-7\_24},
timestamp = {Wed, 18 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LiDB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LiVCW22,
author = {Chen Li and
Maria Virgilio and
Kathleen L. Collins and
Joshua D. Welch},
editor = {Itsik Pe'er},
title = {Single-Cell Multi-omic Velocity Infers Dynamic and Decoupled Gene
Regulation},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {297--299},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_18},
doi = {10.1007/978-3-031-04749-7\_18},
timestamp = {Wed, 18 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LiVCW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LuoKB22,
author = {Xiang Ge Luo and
Jack Kuipers and
Niko Beerenwinkel},
editor = {Itsik Pe'er},
title = {Joint Inference of Repeated Evolutionary Trajectories and Patterns
of Clonal Exclusivity or Co-occurrence from Tumor Mutation Trees},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {304--305},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_21},
doi = {10.1007/978-3-031-04749-7\_21},
timestamp = {Wed, 18 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LuoKB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MaCZR22,
author = {Cong Ma and
Uthsav Chitra and
Shirley Zhang and
Benjamin J. Raphael},
editor = {Itsik Pe'er},
title = {Belayer: Modeling Discrete and Continuous Spatial Variation in Gene
Expression from Spatially Resolved Transcriptomics},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {372--373},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_33},
doi = {10.1007/978-3-031-04749-7\_33},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MaCZR22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MahbubSSRRB22,
author = {Sazan Mahbub and
Shashata Sawmya and
Arpita Saha and
Rezwana Reaz and
M. Sohel Rahman and
Md. Shamsuzzoha Bayzid},
editor = {Itsik Pe'er},
title = {{QT-GILD:} Quartet Based Gene Tree Imputation Using Deep Learning
Improves Phylogenomic Analyses Despite Missing Data},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {159--176},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_10},
doi = {10.1007/978-3-031-04749-7\_10},
timestamp = {Thu, 02 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MahbubSSRRB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Mallawaarachchi22,
author = {Vijini Mallawaarachchi and
Yu Lin},
editor = {Itsik Pe'er},
title = {MetaCoAG: Binning Metagenomic Contigs via Composition, Coverage and
Assembly Graphs},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {70--85},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_5},
doi = {10.1007/978-3-031-04749-7\_5},
timestamp = {Thu, 02 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Mallawaarachchi22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/QianFLL22,
author = {Kun Qian and
Shiwei Fu and
Hongwei Li and
Wei Vivian Li},
editor = {Itsik Pe'er},
title = {A Novel Matrix Factorization Model for Interpreting Single-Cell Gene
Expression from Biologically Heterogeneous Data},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {353--355},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_25},
doi = {10.1007/978-3-031-04749-7\_25},
timestamp = {Tue, 31 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/QianFLL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/RachtmanSBM22,
author = {Eleonora Rachtman and
Shahab Sarmashghi and
Vineet Bafna and
Siavash Mirarab},
editor = {Itsik Pe'er},
title = {Uncertainty Quantification Using Subsampling for Assembly-Free Estimates
of Genomic Distance and Phylogenetic Relationships},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {366--368},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_30},
doi = {10.1007/978-3-031-04749-7\_30},
timestamp = {Wed, 18 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/RachtmanSBM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/RahmanM22,
author = {Amatur Rahman and
Paul Medvedev},
editor = {Itsik Pe'er},
title = {Uncovering Hidden Assembly Artifacts: When Unitigs are not Safe and
Bidirected Graphs are not Helpful {(ABSTRACT)}},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {377--379},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_35},
doi = {10.1007/978-3-031-04749-7\_35},
timestamp = {Wed, 18 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/RahmanM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/RahmaniJY22,
author = {Elior Rahmani and
Michael I. Jordan and
Nir Yosef},
editor = {Itsik Pe'er},
title = {Identifying Systematic Variation at the Single-Cell Level by Leveraging
Low-Resolution Population-Level Data},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {371},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_32},
doi = {10.1007/978-3-031-04749-7\_32},
timestamp = {Wed, 18 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/RahmaniJY22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SaeediSYBBA22,
author = {Seyran Saeedi and
Myrna G. Serrano and
Dennis G. Yang and
J. Paul Brooks and
Gregory A. Buck and
Tomasz Arodz},
editor = {Itsik Pe'er},
title = {Real-Valued Group Testing for Quantitative Molecular Assays},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {126--142},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_8},
doi = {10.1007/978-3-031-04749-7\_8},
timestamp = {Wed, 18 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SaeediSYBBA22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SkumsMTIRK22,
author = {Pavel Skums and
Fatemeh Mohebbi and
Vyacheslav Tsyvina and
Pelin Icer and
Sumathi Ramachandran and
Yury Khudyakov},
editor = {Itsik Pe'er},
title = {{SOPHIE:} Viral Outbreak Investigation and Transmission History Reconstruction
in a Joint Phylogenetic and Network Theory Framework},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {369--370},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_31},
doi = {10.1007/978-3-031-04749-7\_31},
timestamp = {Wed, 18 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SkumsMTIRK22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WangLWX22,
author = {Haohan Wang and
Oscar L. Lopez and
Wei Wu and
Eric P. Xing},
editor = {Itsik Pe'er},
title = {Gene Set Priorization Guided by Regulatory Networks with p-values
through Kernel Mixed Model},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {107--125},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_7},
doi = {10.1007/978-3-031-04749-7\_7},
timestamp = {Wed, 18 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WangLWX22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WetzelZS22,
author = {Joshua L. Wetzel and
Kaiqian Zhang and
Mona Singh},
editor = {Itsik Pe'er},
title = {Learning Probabilistic Protein-DNA Recognition Codes from DNA-Binding
Specificities Using Structural Mappings},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {363--365},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_29},
doi = {10.1007/978-3-031-04749-7\_29},
timestamp = {Fri, 20 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WetzelZS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/XuW22,
author = {Hanwen Xu and
Sheng Wang},
editor = {Itsik Pe'er},
title = {ProTranslator: Zero-Shot Protein Function Prediction Using Textual
Description},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {279--294},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_17},
doi = {10.1007/978-3-031-04749-7\_17},
timestamp = {Wed, 20 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/XuW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/YangWZM22,
author = {Yang Yang and
Yuchuan Wang and
Yang Zhang and
Jian Ma},
editor = {Itsik Pe'er},
title = {Concert: Genome-Wide Prediction of Sequence Elements That Modulate
{DNA} Replication Timing},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {358--359},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_27},
doi = {10.1007/978-3-031-04749-7\_27},
timestamp = {Fri, 12 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/YangWZM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhangJWL22,
author = {Pengfei Zhang and
Zhengyuan Jiang and
Yixuan Wang and
Yu Li},
editor = {Itsik Pe'er},
title = {{CLMB:} Deep Contrastive Learning for Robust Metagenomic Binning},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {326--348},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_23},
doi = {10.1007/978-3-031-04749-7\_23},
timestamp = {Thu, 28 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/ZhangJWL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhangMVN22,
author = {Ran Zhang and
Laetitia Meng{-}Papaxanthos and
Jean{-}Philippe Vert and
William Stafford Noble},
editor = {Itsik Pe'er},
title = {Semi-supervised Single-Cell Cross-modality Translation Using Polarbear},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {20--35},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_2},
doi = {10.1007/978-3-031-04749-7\_2},
timestamp = {Thu, 02 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZhangMVN22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhangSE22,
author = {Chuanyi Zhang and
Palash Sashittal and
Mohammed El{-}Kebir},
editor = {Itsik Pe'er},
title = {{CORSID} Enables de novo Identification of Transcription Regulatory
Sequences and Genes in Coronaviruses},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {360--362},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_28},
doi = {10.1007/978-3-031-04749-7\_28},
timestamp = {Thu, 02 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZhangSE22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhangZM22,
author = {Ruochi Zhang and
Tianming Zhou and
Jian Ma},
editor = {Itsik Pe'er},
title = {Ultrafast and Interpretable Single-Cell 3D Genome Analysis with Fast-Higashi},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {300--301},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_19},
doi = {10.1007/978-3-031-04749-7\_19},
timestamp = {Wed, 18 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZhangZM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhaoMG22,
author = {Jingkang Zhao and
Vincentius Martin and
Raluca Gord{\^{a}}n},
editor = {Itsik Pe'er},
title = {Transcription Factor-Centric Approach to Identify Non-recurring Putative
Regulatory Drivers in Cancer},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {36--51},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_3},
doi = {10.1007/978-3-031-04749-7\_3},
timestamp = {Wed, 18 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZhaoMG22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/recomb/2022,
editor = {Itsik Pe'er},
title = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7},
doi = {10.1007/978-3-031-04749-7},
isbn = {978-3-031-04748-0},
timestamp = {Wed, 18 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/2022.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BaaijensSS20,
author = {Jasmijn A. Baaijens and
Leen Stougie and
Alexander Sch{\"{o}}nhuth},
editor = {Russell Schwartz},
title = {Strain-Aware Assembly of Genomes from Mixed Samples Using Flow Variation
Graphs},
booktitle = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
pages = {221--222},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5\_14},
doi = {10.1007/978-3-030-45257-5\_14},
timestamp = {Tue, 21 Apr 2020 12:14:30 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BaaijensSS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BaharavKTS20,
author = {Tavor Z. Baharav and
Govinda M. Kamath and
David N. C. Tse and
Ilan Shomorony},
editor = {Russell Schwartz},
title = {Spectral Jaccard Similarity: {A} New Approach to Estimating Pairwise
Sequence Alignments},
booktitle = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
pages = {223--225},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5\_15},
doi = {10.1007/978-3-030-45257-5\_15},
timestamp = {Tue, 21 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BaharavKTS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BankevichP20,
author = {Anton Bankevich and
Pavel A. Pevzner},
editor = {Russell Schwartz},
title = {MosaicFlye: Resolving Long Mosaic Repeats Using Long Reads},
booktitle = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
pages = {226--228},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5\_16},
doi = {10.1007/978-3-030-45257-5\_16},
timestamp = {Tue, 21 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BankevichP20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BohnenkamperBDS20,
author = {Leonard Bohnenk{\"{a}}mper and
Mar{\'{\i}}lia D. V. Braga and
Daniel Doerr and
Jens Stoye},
editor = {Russell Schwartz},
title = {Computing the Rearrangement Distance of Natural Genomes},
booktitle = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
pages = {3--18},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5\_1},
doi = {10.1007/978-3-030-45257-5\_1},
timestamp = {Tue, 16 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BohnenkamperBDS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BorgsmullerBMGL20,
author = {Nico Borgsm{\"{u}}ller and
Jos{\'{e}} Bonet and
Francesco Marass and
Abel Gonzalez{-}Perez and
N{\'{u}}ria L{\'{o}}pez{-}Bigas and
Niko Beerenwinkel},
editor = {Russell Schwartz},
title = {Bayesian Non-parametric Clustering of Single-Cell Mutation Profiles},
booktitle = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
pages = {229--230},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5\_17},
doi = {10.1007/978-3-030-45257-5\_17},
timestamp = {Mon, 10 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/BorgsmullerBMGL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BornMOCM20,
author = {Jannis Born and
Matteo Manica and
Ali Oskooei and
Joris Cadow and
Mar{\'{\i}}a Rodr{\'{\i}}guez Mart{\'{\i}}nez},
editor = {Russell Schwartz},
title = {PaccMann\({}^{\mbox{RL}}\): Designing Anticancer Drugs From Transcriptomic
Data via Reinforcement Learning},
booktitle = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
pages = {231--233},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5\_18},
doi = {10.1007/978-3-030-45257-5\_18},
timestamp = {Tue, 16 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BornMOCM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BoseBCPD20,
author = {Aritra Bose and
Myson C. Burch and
Agniva Chowdhury and
Peristera Paschou and
Petros Drineas},
editor = {Russell Schwartz},
title = {CluStrat: {A} Structure Informed Clustering Strategy for Population
Stratification},
booktitle = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
pages = {234--236},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5\_19},
doi = {10.1007/978-3-030-45257-5\_19},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BoseBCPD20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BrandesLL20,
author = {Nadav Brandes and
Nathan Linial and
Michal Linial},
editor = {Russell Schwartz},
title = {{PWAS:} Proteome-Wide Association Study},
booktitle = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
pages = {237--239},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5\_20},
doi = {10.1007/978-3-030-45257-5\_20},
timestamp = {Mon, 04 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BrandesLL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/CaggianoCGMBLDZ20,
author = {Christa Caggiano and
Barbara Celona and
Fleur Garton and
Joel Mefford and
Brian Black and
Catherine Lomen{-}Hoerth and
Andrew Dahl and
Noah Zaitlen},
editor = {Russell Schwartz},
title = {Estimating the Rate of Cell Type Degeneration from Epigenetic Sequencing
of Cell-Free {DNA}},
booktitle = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
pages = {240--242},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5\_21},
doi = {10.1007/978-3-030-45257-5\_21},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/CaggianoCGMBLDZ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/CaylakC20,
author = {Gizem Caylak and
A. Erc{\"{u}}ment {\c{C}}i{\c{c}}ek},
editor = {Russell Schwartz},
title = {Potpourri: An Epistasis Test Prioritization Algorithm via Diverse
{SNP} Selection},
booktitle = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
pages = {243--244},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5\_22},
doi = {10.1007/978-3-030-45257-5\_22},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/CaylakC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Cho0KB20,
author = {Hyunghoon Cho and
Sean Simmons and
Ryan Kim and
Bonnie Berger},
editor = {Russell Schwartz},
title = {Privacy-Preserving Biomedical Database Queries with Optimal Privacy-Utility
Trade-Offs},
booktitle = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
pages = {245--247},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5\_23},
doi = {10.1007/978-3-030-45257-5\_23},
timestamp = {Tue, 21 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Cho0KB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DizajiCH20,
author = {Kamran Ghasedi Dizaji and
Wei Chen and
Heng Huang},
editor = {Russell Schwartz},
title = {Deep Large-Scale Multi-task Learning Network for Gene Expression Inference},
booktitle = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
pages = {19--36},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5\_2},
doi = {10.1007/978-3-030-45257-5\_2},
timestamp = {Thu, 09 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/DizajiCH20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/EkimBO20,
author = {Baris Ekim and
Bonnie Berger and
Yaron Orenstein},
editor = {Russell Schwartz},
title = {A Randomized Parallel Algorithm for Efficiently Finding Near-Optimal
Universal Hitting Sets},
booktitle = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
pages = {37--53},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5\_3},
doi = {10.1007/978-3-030-45257-5\_3},
timestamp = {Mon, 04 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/EkimBO20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/EmeryHNK20,
author = {Kristen Emery and
Syamand Hasam and
William Stafford Noble and
Uri Keich},
editor = {Russell Schwartz},
title = {Multiple Competition-Based {FDR} Control and Its Application to Peptide
Detection},
booktitle = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
pages = {54--71},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5\_4},
doi = {10.1007/978-3-030-45257-5\_4},
timestamp = {Mon, 04 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/EmeryHNK20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GaoW20,
author = {Chao Gao and
Joshua D. Welch},
editor = {Russell Schwartz},
title = {Iterative Refinement of Cellular Identity from Single-Cell Data Using
Online Learning},
booktitle = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
pages = {248--250},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5\_24},
doi = {10.1007/978-3-030-45257-5\_24},
timestamp = {Tue, 21 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/GaoW20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GeWAXB20,
author = {Songwei Ge and
Haohan Wang and
Amir Alavi and
Eric P. Xing and
Ziv Bar{-}Joseph},
editor = {Russell Schwartz},
title = {Supervised Adversarial Alignment of Single-Cell RNA-seq Data},
booktitle = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
pages = {72--87},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5\_5},
doi = {10.1007/978-3-030-45257-5\_5},
timestamp = {Tue, 21 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/GeWAXB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GuoWMWH20,
author = {Yuzhi Guo and
Jiaxiang Wu and
Hehuan Ma and
Sheng Wang and
Junzhou Huang},
editor = {Russell Schwartz},
title = {Bagging {MSA} Learning: Enhancing Low-Quality {PSSM} with Deep Learning
for Accurate Protein Structure Property Prediction},
booktitle = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
pages = {88--103},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5\_6},
doi = {10.1007/978-3-030-45257-5\_6},
timestamp = {Fri, 19 Jul 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/GuoWMWH20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HristovC020,
author = {Borislav H. Hristov and
Bernard Chazelle and
Mona Singh},
editor = {Russell Schwartz},
title = {A Guided Network Propagation Approach to Identify Disease Genes that
Combines Prior and New Information},
booktitle = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
pages = {251--252},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5\_25},
doi = {10.1007/978-3-030-45257-5\_25},
timestamp = {Tue, 21 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HristovC020.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/IvanovBMKRV20,
author = {Pesho Ivanov and
Benjamin Bichsel and
Harun Mustafa and
Andr{\'{e}} Kahles and
Gunnar R{\"{a}}tsch and
Martin T. Vechev},
editor = {Russell Schwartz},
title = {AStarix: Fast and Optimal Sequence-to-Graph Alignment},
booktitle = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
pages = {104--119},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5\_7},
doi = {10.1007/978-3-030-45257-5\_7},
timestamp = {Fri, 14 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/IvanovBMKRV20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/JohnsonBHPPS20,
author = {Ruth Johnson and
Kathryn S. Burch and
Kangcheng Hou and
Mario Paciuc and
Bogdan Pasaniuc and
Sriram Sankararaman},
editor = {Russell Schwartz},
title = {A Scalable Method for Estimating the Regional Polygenicity of Complex
Traits},
booktitle = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
pages = {253--254},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5\_26},
doi = {10.1007/978-3-030-45257-5\_26},
timestamp = {Tue, 21 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/JohnsonBHPPS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/JosephPP20,
author = {Tyler A. Joseph and
Amey P. Pasarkar and
Itsik Pe'er},
editor = {Russell Schwartz},
title = {Efficient and Accurate Inference of Microbial Trajectories from Longitudinal
Count Data},
booktitle = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
pages = {255--256},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5\_27},
doi = {10.1007/978-3-030-45257-5\_27},
timestamp = {Tue, 21 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/JosephPP20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LaPierreTHHHE20,
author = {Nathan LaPierre and
Kodi Taraszka and
Helen Huang and
Rosemary He and
Farhad Hormozdiari and
Eleazar Eskin},
editor = {Russell Schwartz},
title = {Identifying Causal Variants by Fine Mapping Across Multiple Studies},
booktitle = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
pages = {257--258},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5\_28},
doi = {10.1007/978-3-030-45257-5\_28},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LaPierreTHHHE20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LegriedMWR20,
author = {Brandon Legried and
Erin K. Molloy and
Tandy J. Warnow and
S{\'{e}}bastien Roch},
editor = {Russell Schwartz},
title = {Polynomial-Time Statistical Estimation of Species Trees Under Gene
Duplication and Loss},
booktitle = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
pages = {120--135},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5\_8},
doi = {10.1007/978-3-030-45257-5\_8},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LegriedMWR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LiWSJZZ20,
author = {Shuya Li and
Fangping Wan and
Hantao Shu and
Tao Jiang and
Dan Zhao and
Jianyang Zeng},
editor = {Russell Schwartz},
title = {{MONN:} {A} Multi-objective Neural Network for Predicting Pairwise
Non-covalent Interactions and Binding Affinities Between Compounds
and Proteins},
booktitle = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
pages = {259--260},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5\_29},
doi = {10.1007/978-3-030-45257-5\_29},
timestamp = {Wed, 14 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LiWSJZZ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LuoVDS0QZ020,
author = {Yunan Luo and
Lam Vo and
Hantian Ding and
Yufeng Su and
Yang Liu and
Wesley Wei Qian and
Huimin Zhao and
Jian Peng},
editor = {Russell Schwartz},
title = {Evolutionary Context-Integrated Deep Sequence Modeling for Protein
Engineering},
booktitle = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
pages = {261--263},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5\_30},
doi = {10.1007/978-3-030-45257-5\_30},
timestamp = {Thu, 18 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LuoVDS0QZ020.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MaiM20,
author = {Uyen Mai and
Siavash Mirarab},
editor = {Russell Schwartz},
title = {Log Transformation Improves Dating of Phylogenies},
booktitle = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
pages = {264--265},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5\_31},
doi = {10.1007/978-3-030-45257-5\_31},
timestamp = {Tue, 21 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MaiM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MitraZMH20,
author = {Sneha Mitra and
Jianling Zhong and
David M. MacAlpine and
Alexander J. Hartemink},
editor = {Russell Schwartz},
title = {RoboCOP: Multivariate State Space Model Integrating Epigenomic Accessibility
Data to Elucidate Genome-Wide Chromatin Occupancy},
booktitle = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
pages = {136--151},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5\_9},
doi = {10.1007/978-3-030-45257-5\_9},
timestamp = {Tue, 21 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MitraZMH20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PaigeBBGE20,
author = {Brooks Paige and
James Bell and
Aur{\'{e}}lien Bellet and
Adri{\`{a}} Gasc{\'{o}}n and
Daphne Ezer},
editor = {Russell Schwartz},
title = {Reconstructing Genotypes in Private Genomic Databases from Genetic
Risk Scores},
booktitle = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
pages = {266--268},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5\_32},
doi = {10.1007/978-3-030-45257-5\_32},
timestamp = {Thu, 05 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/PaigeBBGE20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/RahmanM20,
author = {Amatur Rahman and
Paul Medvedev},
editor = {Russell Schwartz},
title = {Representation of k-mer Sets Using Spectrum-Preserving String Sets},
booktitle = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
pages = {152--168},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5\_10},
doi = {10.1007/978-3-030-45257-5\_10},
timestamp = {Tue, 21 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/RahmanM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ReynaCER20,
author = {Matthew A. Reyna and
Uthsav Chitra and
Rebecca Elyanow and
Benjamin J. Raphael},
editor = {Russell Schwartz},
title = {NetMix: {A} Network-Structured Mixture Model for Reduced-Bias Estimation
of Altered Subnetworks},
booktitle = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
pages = {169--185},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5\_11},
doi = {10.1007/978-3-030-45257-5\_11},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ReynaCER20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SanaullahZZ20,
author = {Ahsan Sanaullah and
Degui Zhi and
Shaojie Zhang},
editor = {Russell Schwartz},
title = {d-PBWT: Dynamic Positional Burrows-Wheeler Transform},
booktitle = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
pages = {269--270},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5\_33},
doi = {10.1007/978-3-030-45257-5\_33},
timestamp = {Tue, 21 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SanaullahZZ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Sarrazin-Gendron20,
author = {Roman Sarrazin{-}Gendron and
Hua{-}Ting Yao and
Vladimir Reinharz and
Carlos G. Oliver and
Yann Ponty and
J{\'{e}}r{\^{o}}me Waldisp{\"{u}}hl},
editor = {Russell Schwartz},
title = {Stochastic Sampling of Structural Contexts Improves the Scalability
and Accuracy of {RNA} 3D Module Identification},
booktitle = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
pages = {186--201},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5\_12},
doi = {10.1007/978-3-030-45257-5\_12},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Sarrazin-Gendron20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SasonCLS20,
author = {Itay Sason and
Yuexi Chen and
Mark D. M. Leiserson and
Roded Sharan},
editor = {Russell Schwartz},
title = {A Mixture Model for Signature Discovery from Sparse Mutation Data},
booktitle = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
pages = {271--272},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5\_34},
doi = {10.1007/978-3-030-45257-5\_34},
timestamp = {Tue, 21 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SasonCLS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SatasZMR20,
author = {Gryte Satas and
Simone Zaccaria and
Geoffrey Mon and
Benjamin J. Raphael},
editor = {Russell Schwartz},
title = {Single-Cell Tumor Phylogeny Inference with Copy-Number Constrained
Mutation Losses},
booktitle = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
pages = {273},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5\_35},
doi = {10.1007/978-3-030-45257-5\_35},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SatasZMR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WangFBLOP20,
author = {Yijie Wang and
Justin M. Fear and
Isabelle Berger and
Hangnoh Lee and
Brian Oliver and
Teresa M. Przytycka},
editor = {Russell Schwartz},
title = {Reconstruction of Gene Regulatory Networks by Integrating Biological
Model and a Recommendation System},
booktitle = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
pages = {274--275},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5\_36},
doi = {10.1007/978-3-030-45257-5\_36},
timestamp = {Mon, 01 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/WangFBLOP20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Zhang020,
author = {Ruochi Zhang and
Jian Ma},
editor = {Russell Schwartz},
title = {Probing Multi-way Chromatin Interaction with Hypergraph Representation
Learning},
booktitle = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
pages = {276--277},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5\_37},
doi = {10.1007/978-3-030-45257-5\_37},
timestamp = {Tue, 21 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Zhang020.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhengKM20,
author = {Hongyu Zheng and
Carl Kingsford and
Guillaume Mar{\c{c}}ais},
editor = {Russell Schwartz},
title = {Lower Density Selection Schemes via Small Universal Hitting Sets with
Short Remaining Path Length},
booktitle = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
pages = {202--217},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5\_13},
doi = {10.1007/978-3-030-45257-5\_13},
timestamp = {Wed, 22 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZhengKM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/recomb/2020,
editor = {Russell Schwartz},
title = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5},
doi = {10.1007/978-3-030-45257-5},
isbn = {978-3-030-45256-8},
timestamp = {Tue, 21 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/2020.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/AlmodaresiPFJP19,
author = {Fatemeh Almodaresi and
Prashant Pandey and
Michael Ferdman and
Rob Johnson and
Rob Patro},
editor = {Lenore J. Cowen},
title = {An Efficient, Scalable and Exact Representation of High-Dimensional
Color Information Enabled via de Bruijn Graph Search},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {1--18},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-17083-7\_1},
doi = {10.1007/978-3-030-17083-7\_1},
timestamp = {Wed, 23 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/AlmodaresiPFJP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ArbabiAFB19,
author = {Aryan Arbabi and
David R. Adams and
Sanja Fidler and
Michael Brudno},
editor = {Lenore J. Cowen},
title = {Identifying Clinical Terms in Free-Text Notes Using Ontology-Guided
Machine Learning},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {19--34},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-17083-7\_2},
doi = {10.1007/978-3-030-17083-7\_2},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ArbabiAFB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BalabanSM19,
author = {Metin Balaban and
Shahab Sarmashghi and
Siavash Mirarab},
editor = {Lenore J. Cowen},
title = {{APPLES:} Fast Distance-Based Phylogenetic Placement},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {287--288},
publisher = {Springer},
year = {2019},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-030-17083-7\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/BalabanSM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BehsazMGPFSDMP19,
author = {Bahar Behsaz and
Hosein Mohimani and
Alexey A. Gurevich and
Andrey D. Prjibelski and
Mark F. Fisher and
Larry Smarr and
Pieter C. Dorrestein and
Joshua S. Mylne and
Pavel A. Pevzner},
editor = {Lenore J. Cowen},
title = {De Novo Peptide Sequencing Reveals a Vast Cyclopeptidome in Human
Gut and Other Environments},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {289--291},
publisher = {Springer},
year = {2019},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-030-17083-7\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/BehsazMGPFSDMP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BennerV19,
author = {Philipp Benner and
Martin Vingron},
editor = {Lenore J. Cowen},
title = {ModHMM: {A} Modular Supra-Bayesian Genome Segmentation Method},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {35--50},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-17083-7\_3},
doi = {10.1007/978-3-030-17083-7\_3},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BennerV19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BrandYLBWZ19,
author = {Lodewijk Brand and
Xue Yang and
Kai Liu and
Saad El Beleidy and
Hua Wang and
Hao Zhang},
editor = {Lenore J. Cowen},
title = {Learning Robust Multi-label Sample Specific Distances for Identifying
{HIV-1} Drug Resistance},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {51--67},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-17083-7\_4},
doi = {10.1007/978-3-030-17083-7\_4},
timestamp = {Mon, 12 Aug 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BrandYLBWZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChenJM19,
author = {Dexiong Chen and
Laurent Jacob and
Julien Mairal},
editor = {Lenore J. Cowen},
title = {Biological Sequence Modeling with Convolutional Kernel Networks},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {292--293},
publisher = {Springer},
year = {2019},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-030-17083-7\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/ChenJM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DoBMBELRMC19,
author = {Van Hoan Do and
Mislav Blazevic and
Pablo Monteagudo and
Luka Borozan and
Khaled M. Elbassioni and
S{\"{o}}ren Laue and
Francisca Rojas Ringeling and
Domagoj Matijevic and
Stefan Canzar},
editor = {Lenore J. Cowen},
title = {Dynamic Pseudo-time Warping of Complex Single-Cell Trajectories},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {294--296},
publisher = {Springer},
year = {2019},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-030-17083-7\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/DoBMBELRMC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ElyanowDER19,
author = {Rebecca Elyanow and
Bianca Dumitrascu and
Barbara E. Engelhardt and
Benjamin J. Raphael},
editor = {Lenore J. Cowen},
title = {netNMF-sc: {A} Network Regularization Algorithm for Dimensionality
Reduction and Imputation of Single-Cell Expression Data},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {297--298},
publisher = {Springer},
year = {2019},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-030-17083-7\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/ElyanowDER19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GongP19,
author = {Boying Gong and
Elizabeth Purdom},
editor = {Lenore J. Cowen},
title = {MethCP: Differentially Methylated Region Detection with Change Point
Models},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {68--84},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-17083-7\_5},
doi = {10.1007/978-3-030-17083-7\_5},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/GongP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HieCDBB19,
author = {Brian Hie and
Hyunghoon Cho and
Benjamin Demeo and
Bryan Bryson and
Bonnie Berger},
editor = {Lenore J. Cowen},
title = {Geometric Sketching of Single-Cell Data Preserves Transcriptional
Structure},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {299--301},
publisher = {Springer},
year = {2019},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-030-17083-7\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/HieCDBB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/JainZGA19,
author = {Chirag Jain and
Haowen Zhang and
Yu Gao and
Srinivas Aluru},
editor = {Lenore J. Cowen},
title = {On the Complexity of Sequence to Graph Alignment},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {85--100},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-17083-7\_6},
doi = {10.1007/978-3-030-17083-7\_6},
timestamp = {Fri, 14 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/JainZGA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/JouHLD19,
author = {Jonathan D. Jou and
Graham T. Holt and
Anna U. Lowegard and
Bruce Randall Donald},
editor = {Lenore J. Cowen},
title = {Minimization-Aware Recursive K* {K} {\({_\ast}\)} {(} MARK* {MARK}
{\({_\ast}\)} {):} {A} Novel, Provable Algorithm that Accelerates
Ensemble-Based Protein Design and Provably Approximates the Energy
Landscape},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {101--119},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-17083-7\_7},
doi = {10.1007/978-3-030-17083-7\_7},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/JouHLD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KarasikovMJJRK19,
author = {Mikhail Karasikov and
Harun Mustafa and
Amir Joudaki and
Sara Javadzadeh{-}No and
Gunnar R{\"{a}}tsch and
Andr{\'{e}} Kahles},
editor = {Lenore J. Cowen},
title = {Sparse Binary Relation Representations for Genome Graph Annotation},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {120--135},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-17083-7\_8},
doi = {10.1007/978-3-030-17083-7\_8},
timestamp = {Fri, 31 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KarasikovMJJRK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KimKMMR19,
author = {Younhun Kim and
Frederic Koehler and
Ankur Moitra and
Elchanan Mossel and
Govind Ramnarayan},
editor = {Lenore J. Cowen},
title = {How Many Subpopulations Is Too Many? Exponential Lower Bounds for
Inferring Population Histories},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {136--157},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-17083-7\_9},
doi = {10.1007/978-3-030-17083-7\_9},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KimKMMR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KockanZDKKWS19,
author = {Can Kockan and
Kaiyuan Zhu and
Natnatee Dokmai and
Nikolai Karpov and
M. Oguzhan K{\"{u}}lekci and
David P. Woodruff and
S{\"{u}}leyman Cenk Sahinalp},
editor = {Lenore J. Cowen},
title = {Sketching Algorithms for Genomic Data Analysis and Querying in a Secure
Enclave},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {302--304},
publisher = {Springer},
year = {2019},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-030-17083-7\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/KockanZDKKWS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KuhnleMBGLM19,
author = {Alan Kuhnle and
Taher Mun and
Christina Boucher and
Travis Gagie and
Ben Langmead and
Giovanni Manzini},
editor = {Lenore J. Cowen},
title = {Efficient Construction of a Complete Index for Pan-Genomics Read Alignment},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {158--173},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-17083-7\_10},
doi = {10.1007/978-3-030-17083-7\_10},
timestamp = {Mon, 10 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KuhnleMBGLM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LeiLGSSWLXHDS19,
author = {Haoyun Lei and
Bochuan Lyu and
E. Michael Gertz and
Alejandro A. Sch{\"{a}}ffer and
Xulian Shi and
Kui Wu and
Guibo Li and
Liqin Xu and
Yong Hou and
Michael Dean and
Russell Schwartz},
editor = {Lenore J. Cowen},
title = {Tumor Copy Number Deconvolution Integrating Bulk and Single-Cell Sequencing
Data},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {174--189},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-17083-7\_11},
doi = {10.1007/978-3-030-17083-7\_11},
timestamp = {Tue, 15 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LeiLGSSWLXHDS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LuoMZS0I019,
author = {Yunan Luo and
Jianzhu Ma and
Xiaoming Zhao and
Yufeng Su and
Yang Liu and
Trey Ideker and
Jian Peng},
editor = {Lenore J. Cowen},
title = {Mitigating Data Scarcity in Protein Binding Prediction Using Meta-Learning},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {305--307},
publisher = {Springer},
year = {2019},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-030-17083-7\%2F1.pdf},
timestamp = {Tue, 15 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/LuoMZS0I019.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MeffordPZKALPYW19,
author = {Joel Mefford and
Danny S. Park and
Zhili Zheng and
Arthur Ko and
Mika Ala{-}Korpela and
Markku Laakso and
Paivi Pajukanta and
Jian Yang and
John S. Witte and
Noah Zaitlen},
editor = {Lenore J. Cowen},
title = {Efficient Estimation and Applications of Cross-Validated Genetic Predictions},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {308--310},
publisher = {Springer},
year = {2019},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-030-17083-7\%2F1.pdf},
timestamp = {Thu, 01 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MeffordPZKALPYW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MyersSR19,
author = {Matthew A. Myers and
Gryte Satas and
Benjamin J. Raphael},
editor = {Lenore J. Cowen},
title = {Inferring Tumor Evolution from Longitudinal Samples},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {311},
publisher = {Springer},
year = {2019},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-030-17083-7\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/MyersSR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PanJL19,
author = {Weihua Pan and
Tao Jiang and
Stefano Lonardi},
editor = {Lenore J. Cowen},
title = {{OMGS:} Optical Map-Based Genome Scaffolding},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {190--207},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-17083-7\_12},
doi = {10.1007/978-3-030-17083-7\_12},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PanJL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PazokitoroudiWB19,
author = {Ali Pazokitoroudi and
Yue Wu and
Kathryn S. Burch and
Kangcheng Hou and
Bogdan Pasaniuc and
Sriram Sankararaman},
editor = {Lenore J. Cowen},
title = {Scalable Multi-component Linear Mixed Models with Application to {SNP}
Heritability Estimation},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {312--313},
publisher = {Springer},
year = {2019},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-030-17083-7\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/PazokitoroudiWB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PellegrinaPV19,
author = {Leonardo Pellegrina and
Cinzia Pizzi and
Fabio Vandin},
editor = {Lenore J. Cowen},
title = {Fast Approximation of Frequent k-mers and Applications to Metagenomics},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {208--226},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-17083-7\_13},
doi = {10.1007/978-3-030-17083-7\_13},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/PellegrinaPV19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SahlinM19,
author = {Kristoffer Sahlin and
Paul Medvedev},
editor = {Lenore J. Cowen},
title = {De Novo Clustering of Long-Read Transcriptome Data Using a Greedy,
Quality-Value Based Algorithm},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {227--242},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-17083-7\_14},
doi = {10.1007/978-3-030-17083-7\_14},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SahlinM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SarmashghiB19,
author = {Shahab Sarmashghi and
Vineet Bafna},
editor = {Lenore J. Cowen},
title = {A Note on Computing Interval Overlap Statistics},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {314--315},
publisher = {Springer},
year = {2019},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-030-17083-7\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/SarmashghiB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SasonWRLPS19,
author = {Itay Sason and
Damian W{\'{o}}jtowicz and
Welles Robinson and
Mark D. M. Leiserson and
Teresa M. Przytycka and
Roded Sharan},
editor = {Lenore J. Cowen},
title = {A Sticky Multinomial Mixture Model of Strand-Coordinated Mutational
Processes in Cancer},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {243--255},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-17083-7\_15},
doi = {10.1007/978-3-030-17083-7\_15},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SasonWRLPS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ThompsonCRH19,
author = {Mike Thompson and
Zeyuan Johnson Chen and
Elior Rahmani and
Eran Halperin},
editor = {Lenore J. Cowen},
title = {Distinguishing Biological from Technical Sources of Variation Using
a Combination of Methylation Datasets},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {316--317},
publisher = {Springer},
year = {2019},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-030-17083-7\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/ThompsonCRH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WangFA19,
author = {Sheng Wang and
Emily R. Flynn and
Russ B. Altman},
editor = {Lenore J. Cowen},
title = {GRep: Gene Set Representation via Gaussian Embedding},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {318--319},
publisher = {Springer},
year = {2019},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-030-17083-7\%2F1.pdf},
timestamp = {Wed, 13 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WangFA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WangHP19,
author = {Yijie Wang and
Jan Hoinka and
Teresa M. Przytycka},
editor = {Lenore J. Cowen},
title = {Accurate Sub-population Detection and Mapping Across Single Cell Experiments
with PopCorn},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {320--321},
publisher = {Springer},
year = {2019},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-030-17083-7\%2F1.pdf},
timestamp = {Mon, 01 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/WangHP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WangYSG19,
author = {Ziheng Wang and
Grace H. T. Yeo and
Richard Sherwood and
David Gifford},
editor = {Lenore J. Cowen},
title = {Disentangled Representations of Cellular Identity},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {256--271},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-17083-7\_16},
doi = {10.1007/978-3-030-17083-7\_16},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WangYSG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WuLLTL19,
author = {Ye Wu and
Ruibang Luo and
Henry C. M. Leung and
Hing{-}Fung Ting and
Tak Wah Lam},
editor = {Lenore J. Cowen},
title = {{RENET:} {A} Deep Learning Approach for Extracting Gene-Disease Associations
from Literature},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {272--284},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-17083-7\_17},
doi = {10.1007/978-3-030-17083-7\_17},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/WuLLTL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WuYHS19,
author = {Yue Wu and
Anna Yaschenko and
Mohammadreza Hajy Heydary and
Sriram Sankararaman},
editor = {Lenore J. Cowen},
title = {Fast Estimation of Genetic Correlation for Biobank-Scale Data},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {322--323},
publisher = {Springer},
year = {2019},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-030-17083-7\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/WuYHS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Xu19,
author = {Jinbo Xu},
editor = {Lenore J. Cowen},
title = {stance-Based Protein Folding Powered by Deep Learning},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {324--325},
publisher = {Springer},
year = {2019},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-030-17083-7\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/Xu19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/YangZRD019,
author = {Yang Yang and
Yang Zhang and
Bing Ren and
Jesse R. Dixon and
Jian Ma},
editor = {Lenore J. Cowen},
title = {Comparing 3D Genome Organization in Multiple Species Using Phylo-HMRF},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {326--327},
publisher = {Springer},
year = {2019},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-030-17083-7\%2F1.pdf},
timestamp = {Sat, 25 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/YangZRD019.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhangKT19,
author = {Jesse M. Zhang and
Govinda M. Kamath and
David N. C. Tse},
editor = {Lenore J. Cowen},
title = {Towards a Post-clustering Test for Differential Expression},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {328--329},
publisher = {Springer},
year = {2019},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-030-17083-7\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/ZhangKT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhangXZ19,
author = {Martin J. Zhang and
Fei Xia and
James Zou},
editor = {Lenore J. Cowen},
title = {AdaFDR: {A} Fast, Powerful and Covariate-Adaptive Approach to Multiple
Hypothesis Testing},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {330--333},
publisher = {Springer},
year = {2019},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-030-17083-7\%2F1.pdf},
timestamp = {Fri, 04 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/ZhangXZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/recomb/2019,
editor = {Lenore J. Cowen},
title = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-17083-7},
doi = {10.1007/978-3-030-17083-7},
isbn = {978-3-030-17082-0},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/2019.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BakhtiariSGBB18,
author = {Mehrdad Bakhtiari and
Sharona Shleizer{-}Burko and
Melissa Gymrek and
Vikas Bansal and
Vineet Bafna},
editor = {Benjamin J. Raphael},
title = {Targeted Genotyping of Variable Number Tandem Repeats with AdVNTR},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {243--244},
publisher = {Springer},
year = {2018},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-89929-9\%2F1.pdf},
timestamp = {Fri, 09 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/BakhtiariSGBB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BankevichP18,
author = {Anton Bankevich and
Pavel A. Pevzner},
editor = {Benjamin J. Raphael},
title = {Long Reads Enable Accurate Estimates of Complexity of Metagenomes},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {1--20},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-89929-9\_1},
doi = {10.1007/978-3-319-89929-9\_1},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BankevichP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BassoHV18,
author = {Rebecca Sarto Basso and
Dorit S. Hochbaum and
Fabio Vandin},
editor = {Benjamin J. Raphael},
title = {Efficient Algorithms to Discover Alterations with Complementary Functional
Association in Cancer},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {278--279},
publisher = {Springer},
year = {2018},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-89929-9\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/BassoHV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BeplerMNBSB18,
author = {Tristan Bepler and
Andrew Morin and
Alex J. Noble and
Julia Brasch and
Lawrence Shapiro and
Bonnie Berger},
editor = {Benjamin J. Raphael},
title = {Positive-Unlabeled Convolutional Neural Networks for Particle Picking
in Cryo-electron Micrographs},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {245--247},
publisher = {Springer},
year = {2018},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-89929-9\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/BeplerMNBSB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BonnetRS18,
author = {{\'{E}}douard Bonnet and
Pawel Rzazewski and
Florian Sikora},
editor = {Benjamin J. Raphael},
title = {Designing {RNA} Secondary Structures Is Hard},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {248--250},
publisher = {Springer},
year = {2018},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-89929-9\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/BonnetRS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BoroojenySSGSC18,
author = {Ali Ebrahimpour Boroojeny and
Akash Shrestha and
Ali Sharifi{-}Zarchi and
Suzanne Renick Gallagher and
S{\"{u}}leyman Cenk Sahinalp and
Hamidreza Chitsaz},
editor = {Benjamin J. Raphael},
title = {{GTED:} Graph Traversal Edit Distance},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {37--53},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-89929-9\_3},
doi = {10.1007/978-3-319-89929-9\_3},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BoroojenySSGSC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChakrabortyCMS18,
author = {Shounak Chakraborty and
Stefan Canzar and
Tobias Marschall and
Marcel H. Schulz},
editor = {Benjamin J. Raphael},
title = {Chromatyping: Reconstructing Nucleosome Profiles from NOMe Sequencing
Data},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {21--36},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-89929-9\_2},
doi = {10.1007/978-3-319-89929-9\_2},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ChakrabortyCMS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChoB018,
author = {Hyunghoon Cho and
Bonnie Berger and
Jian Peng},
editor = {Benjamin J. Raphael},
title = {Generalizable Visualization of Mega-Scale Single-Cell Data},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {251--253},
publisher = {Springer},
year = {2018},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-89929-9\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/ChoB018.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DurifMMLP18,
author = {Ghislain Durif and
Laurent Modolo and
Jeff E. Mold and
Sophie Lambert{-}Lacroix and
Franck Picard},
editor = {Benjamin J. Raphael},
title = {Probabilistic Count Matrix Factorization for Single Cell Expression
Data Analysis},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {254--255},
publisher = {Springer},
year = {2018},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-89929-9\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/DurifMMLP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GalitzineBCV18,
author = {Cyril Galitzine and
Pierre M. Jean Beltran and
Ileana M. Cristea and
Olga Vitek},
editor = {Benjamin J. Raphael},
title = {Statistical Inference of Peroxisome Dynamics},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {54--74},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-89929-9\_4},
doi = {10.1007/978-3-319-89929-9\_4},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/GalitzineBCV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GortlerSWOSA18,
author = {Franziska G{\"{o}}rtler and
Stefan Solbrig and
Tilo Wettig and
Peter J. Oefner and
Rainer Spang and
Michael Altenbuchinger},
editor = {Benjamin J. Raphael},
title = {Loss-Function Learning for Digital Tissue Deconvolution},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {75--89},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-89929-9\_5},
doi = {10.1007/978-3-319-89929-9\_5},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/GortlerSWOSA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HammerPWW18,
author = {Stefan Hammer and
Yann Ponty and
Wei Wang and
Sebastian Will},
editor = {Benjamin J. Raphael},
title = {Fixed-Parameter Tractable Sampling for {RNA} Design with Multiple
Target Structures},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {256--258},
publisher = {Springer},
year = {2018},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-89929-9\%2F1.pdf},
timestamp = {Tue, 28 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HammerPWW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HuynhH18,
author = {Linh Huynh and
Fereydoun Hormozdiari},
editor = {Benjamin J. Raphael},
title = {Contribution of Structural Variation to Genome Structure: {TAD} Fusion
Discovery and Ranking},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {259--260},
publisher = {Springer},
year = {2018},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-89929-9\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/HuynhH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/JosephP18,
author = {Tyler A. Joseph and
Itsik Pe'er},
editor = {Benjamin J. Raphael},
title = {Inference of Population Structure from Ancient {DNA}},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {90--104},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-89929-9\_6},
doi = {10.1007/978-3-319-89929-9\_6},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/JosephP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KolmogorovYLP18,
author = {Mikhail Kolmogorov and
Jeffrey Yuan and
Yu Lin and
Pavel A. Pevzner},
editor = {Benjamin J. Raphael},
title = {Assembly of Long Error-Prone Reads Using Repeat Graphs},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {261--262},
publisher = {Springer},
year = {2018},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-89929-9\%2F1.pdf},
timestamp = {Tue, 31 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KolmogorovYLP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KuosmanenPGCTM18,
author = {Anna Kuosmanen and
Topi Paavilainen and
Travis Gagie and
Rayan Chikhi and
Alexandru I. Tomescu and
Veli M{\"{a}}kinen},
editor = {Benjamin J. Raphael},
title = {Using Minimum Path Cover to Boost Dynamic Programming on DAGs: Co-linear
Chaining Extended},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {105--121},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-89929-9\_7},
doi = {10.1007/978-3-319-89929-9\_7},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KuosmanenPGCTM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LarsonTS18,
author = {Gary Larson and
Jeffrey L. Thorne and
Scott C. Schmidler},
editor = {Benjamin J. Raphael},
title = {Modeling Dependence in Evolutionary Inference for Proteins},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {122--137},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-89929-9\_8},
doi = {10.1007/978-3-319-89929-9\_8},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LarsonTS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LeisersonFCFLSC18,
author = {Mark D. M. Leiserson and
Jason Fan and
Anthony Cannistra and
Inbar Fried and
Tim Lim and
Thomas Schaffner and
Mark Crovella and
Benjamin J. Hescott},
editor = {Benjamin J. Raphael},
title = {A Multi-species Functional Embedding Integrating Sequence and Network
Structure},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {263--265},
publisher = {Springer},
year = {2018},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-89929-9\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/LeisersonFCFLSC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LiDT18,
author = {Sujun Li and
Alex DeCourcy and
Haixu Tang},
editor = {Benjamin J. Raphael},
title = {Constrained De Novo Sequencing of neo-Epitope Peptides Using Tandem
Mass Spectrometry},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {138--153},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-89929-9\_9},
doi = {10.1007/978-3-319-89929-9\_9},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LiDT18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LuoMLYIP18,
author = {Yunan Luo and
Jianzhu Ma and
Yang Liu and
Qing Ye and
Trey Ideker and
Jian Peng},
editor = {Benjamin J. Raphael},
title = {Deciphering Signaling Specificity with Deep Neural Networks},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {266--268},
publisher = {Springer},
year = {2018},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-89929-9\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/LuoMLYIP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MalikicJKSB18,
author = {Salem Malikic and
Katharina Jahn and
Jack Kuipers and
S{\"{u}}leyman Cenk Sahinalp and
Niko Beerenwinkel},
editor = {Benjamin J. Raphael},
title = {Integrative Inference of Subclonal Tumour Evolution from Single-Cell
and Bulk Sequencing Data},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {269--270},
publisher = {Springer},
year = {2018},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-89929-9\%2F1.pdf},
timestamp = {Thu, 09 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MalikicJKSB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Orenstein18,
author = {Yaron Orenstein},
editor = {Benjamin J. Raphael},
title = {Reverse de Bruijn: Utilizing Reverse Peptide Synthesis to Cover All
Amino Acid k-mers},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {154--166},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-89929-9\_10},
doi = {10.1007/978-3-319-89929-9\_10},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Orenstein18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PandeyABFJP18,
author = {Prashant Pandey and
Fatemeh Almodaresi and
Michael A. Bender and
Michael Ferdman and
Rob Johnson and
Rob Patro},
editor = {Benjamin J. Raphael},
title = {Mantis: {A} Fast, Small, and Exact Large-Scale Sequence-Search Index},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {271--273},
publisher = {Springer},
year = {2018},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-89929-9\%2F1.pdf},
timestamp = {Wed, 23 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PandeyABFJP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/RahmaniSRSH18,
author = {Elior Rahmani and
Regev Schweiger and
Saharon Rosset and
Sriram Sankararaman and
Eran Halperin},
editor = {Benjamin J. Raphael},
title = {Tensor Composition Analysis Detects Cell-Type Specific Associations
in Epigenetic Studies},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {274--275},
publisher = {Springer},
year = {2018},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-89929-9\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/RahmaniSRSH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/RochW18,
author = {Sebastien Roch and
Kun{-}Chieh Wang},
editor = {Benjamin J. Raphael},
title = {Circular Networks from Distorted Metrics},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {167--176},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-89929-9\_11},
doi = {10.1007/978-3-319-89929-9\_11},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/RochW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SarmashghiBGBM18,
author = {Shahab Sarmashghi and
Kristine Bohmann and
M. Thomas P. Gilbert and
Vineet Bafna and
Siavash Mirarab},
editor = {Benjamin J. Raphael},
title = {Assembly-Free and Alignment-Free Sample Identification Using Genome
Skims},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {276--277},
publisher = {Springer},
year = {2018},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-89929-9\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/SarmashghiBGBM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ShajiiNB18,
author = {Ariya Shajii and
Ibrahim Numanagic and
Bonnie Berger},
editor = {Benjamin J. Raphael},
title = {Latent Variable Model for Aligning Barcoded Short-Reads Improves Downstream
Analyses},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {280--282},
publisher = {Springer},
year = {2018},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-89929-9\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/ShajiiNB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SilverbushCYGBS18,
author = {Dana Silverbush and
Simona Cristea and
Gali Yanovich and
Tamar Geiger and
Niko Beerenwinkel and
Roded Sharan},
editor = {Benjamin J. Raphael},
title = {ModulOmics: Integrating Multi-Omics Data to Identify Cancer Driver
Modules},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {283--284},
publisher = {Springer},
year = {2018},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-89929-9\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/SilverbushCYGBS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SingerKJB18,
author = {Jochen Singer and
Jack Kuipers and
Katharina Jahn and
Niko Beerenwinkel},
editor = {Benjamin J. Raphael},
title = {SCI{\(\Phi\)}: Single-Cell Mutation Identification via Phylogenetic
Inference},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {285--286},
publisher = {Springer},
year = {2018},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-89929-9\%2F1.pdf},
timestamp = {Thu, 09 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SingerKJB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SouleSW18,
author = {Antoine Soul{\'{e}} and
Jean{-}Marc Steyaert and
J{\'{e}}r{\^{o}}me Waldisp{\"{u}}hl},
editor = {Benjamin J. Raphael},
title = {A Nested 2-Level Cross-Validation Ensemble Learning Pipeline Suggests
a Negative Pressure Against Crosstalk snoRNA-mRNA Interactions in
Saccharomyces Cerevisae},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {177--193},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-89929-9\_12},
doi = {10.1007/978-3-319-89929-9\_12},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SouleSW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SverchkovHGC18,
author = {Yuriy Sverchkov and
Yi{-}Hsuan Ho and
Audrey P. Gasch and
Mark Craven},
editor = {Benjamin J. Raphael},
title = {Context-Specific Nested Effects Models},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {194--210},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-89929-9\_13},
doi = {10.1007/978-3-319-89929-9\_13},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SverchkovHGC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ThankachanACA18,
author = {Sharma V. Thankachan and
Chaitanya Aluru and
Sriram P. Chockalingam and
Srinivas Aluru},
editor = {Benjamin J. Raphael},
title = {Algorithmic Framework for Approximate Matching Under Bounded Edits
with Applications to Sequence Analysis},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {211--224},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-89929-9\_14},
doi = {10.1007/978-3-319-89929-9\_14},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ThankachanACA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WangHSP18,
author = {Yijie Wang and
Jan Hoinka and
Piotr Swiderski and
Teresa M. Przytycka},
editor = {Benjamin J. Raphael},
title = {AptaBlocks: Accelerating the Design of RNA-Based Drug Delivery Systems},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {287--288},
publisher = {Springer},
year = {2018},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-89929-9\%2F1.pdf},
timestamp = {Mon, 01 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/WangHSP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WuES18,
author = {Yue Wu and
Eleazar Eskin and
Sriram Sankararaman},
editor = {Benjamin J. Raphael},
title = {A Unifying Framework for Summary Statistic Imputation},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {289--290},
publisher = {Springer},
year = {2018},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-89929-9\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/WuES18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/YamadaLFPM18,
author = {Naomi Yamada and
William K. M. Lai and
Nina Farrell and
B. Franklin Pugh and
Shaun Mahony},
editor = {Benjamin J. Raphael},
title = {Characterizing Protein-DNA Binding Event Subtypes in ChIP-Exo Data},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {291--292},
publisher = {Springer},
year = {2018},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-89929-9\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/YamadaLFPM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/YangGSCOG018,
author = {Yang Yang and
Quanquan Gu and
Takayo Sasaki and
Julianna Crivello and
Rachel O'Neill and
David M. Gilbert and
Jian Ma},
editor = {Benjamin J. Raphael},
title = {Continuous-Trait Probabilistic Model for Comparing Multi-species Functional
Genomic Data},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {293--294},
publisher = {Springer},
year = {2018},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-89929-9\%2F1.pdf},
timestamp = {Tue, 17 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/YangGSCOG018.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhouLAQA18,
author = {Zhemin Zhou and
Nina Luhmann and
Nabil{-}Fareed Alikhan and
Christopher Quince and
Mark Achtman},
editor = {Benjamin J. Raphael},
title = {Accurate Reconstruction of Microbial Strains from Metagenomic Sequencing
Using Representative Reference Genomes},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {225--240},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-89929-9\_15},
doi = {10.1007/978-3-319-89929-9\_15},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZhouLAQA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhouWX18,
author = {Tianming Zhou and
Sheng Wang and
Jinbo Xu},
editor = {Benjamin J. Raphael},
title = {Deep Learning Reveals Many More Inter-protein Residue-Residue Contacts
than Direct Coupling Analysis},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {295--296},
publisher = {Springer},
year = {2018},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-89929-9\%2F1.pdf},
timestamp = {Tue, 28 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/ZhouWX18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/recomb/2018,
editor = {Benjamin J. Raphael},
title = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-89929-9},
doi = {10.1007/978-3-319-89929-9},
isbn = {978-3-319-89928-2},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/2018.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/AhnV17,
author = {Soyeon Ahn and
Haris Vikalo},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {aBayesQR: {A} Bayesian Method for Reconstruction of Viral Populations
Characterized by Low Diversity},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {353--369},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-56970-3\_22},
doi = {10.1007/978-3-319-56970-3\_22},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/AhnV17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChaissonMKE17,
author = {Mark J. P. Chaisson and
Sudipto Mukherjee and
Sreeram Kannan and
Evan E. Eichler},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {Resolving Multicopy Duplications de novo Using Polyploid Phasing},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {117--133},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-56970-3\_8},
doi = {10.1007/978-3-319-56970-3\_8},
timestamp = {Thu, 26 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/ChaissonMKE17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DaoKMSP17,
author = {Phuong Dao and
Yoo{-}Ah Kim and
Sanna Madan and
Roded Sharan and
Teresa M. Przytycka},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {BeWith: {A} Between-Within Method for Module Discovery in Cancer using
Integrated Analysis of Mutual Exclusivity, Co-occurrence and Functional
Interactions (Extended Abstract)},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {370--371},
year = {2017},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-56970-3\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/DaoKMSP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DeBlasioK17,
author = {Dan F. DeBlasio and
John D. Kececioglu},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {Boosting Alignment Accuracy by Adaptive Local Realignment},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {1--17},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-56970-3\_1},
doi = {10.1007/978-3-319-56970-3\_1},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DeBlasioK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GuoTZG17,
author = {Yuchun Guo and
Kevin Tian and
Haoyang Zeng and
David K. Gifford},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {K-mer Set Memory {(KSM)} Motif Representation Enables Accurate Prediction
of the Impact of Regulatory Variants},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {372--374},
year = {2017},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-56970-3\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/GuoTZG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HanWY17,
author = {Wontack Han and
Mingjie Wang and
Yuzhen Ye},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {A Concurrent Subtractive Assembly Approach for Identification of Disease
Associated Sub-metagenomes},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {18--33},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-56970-3\_2},
doi = {10.1007/978-3-319-56970-3\_2},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HanWY17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HausslerSPNNZM17,
author = {David Haussler and
Maciej Smuga{-}Otto and
Benedict Paten and
Adam M. Novak and
Sergei Nikitin and
Maria Zueva and
Dmitrii Miagkov},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {A Flow Procedure for the Linearization of Genome Sequence Graphs},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {34--49},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-56970-3\_3},
doi = {10.1007/978-3-319-56970-3\_3},
timestamp = {Wed, 25 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HausslerSPNNZM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HolleyWSH17,
author = {Guillaume Holley and
Roland Wittler and
Jens Stoye and
Faraz Hach},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {Dynamic Alignment-Free and Reference-Free Read Compression},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {50--65},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-56970-3\_4},
doi = {10.1007/978-3-319-56970-3\_4},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/HolleyWSH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Hristov017,
author = {Borislav H. Hristov and
Mona Singh},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {Network-Based Coverage of Mutational Profiles Reveals Cancer Genes},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {375--376},
year = {2017},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-56970-3\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/Hristov017.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HuynhH17,
author = {Linh Huynh and
Fereydoun Hormozdiari},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {Ultra-Accurate Complex Disorder Prediction: Case Study of Neurodevelopmental
Disorders},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {377--378},
year = {2017},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-56970-3\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/HuynhH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/JainDKAP17,
author = {Chirag Jain and
Alexander T. Dilthey and
Sergey Koren and
Srinivas Aluru and
Adam M. Phillippy},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {A Fast Approximate Algorithm for Mapping Long Reads to Large Reference
Databases},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {66--81},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-56970-3\_5},
doi = {10.1007/978-3-319-56970-3\_5},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/JainDKAP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/JanssonLRS17,
author = {Jesper Jansson and
Andrzej Lingas and
Ramesh Rajaby and
Wing{-}Kin Sung},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {Determining the Consistency of Resolved Triplets and Fan Triplets},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {82--98},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-56970-3\_6},
doi = {10.1007/978-3-319-56970-3\_6},
timestamp = {Tue, 17 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/JanssonLRS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KeichN17,
author = {Uri Keich and
William Stafford Noble},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {Progressive Calibration and Averaging for Tandem Mass Spectrometry
Statistical Confidence Estimation: Why Settle for a Single Decoy?},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {99--116},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-56970-3\_7},
doi = {10.1007/978-3-319-56970-3\_7},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KeichN17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LeungDF17,
author = {Michael K. K. Leung and
Andrew Delong and
Brendan J. Frey},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {Inference of the Human Polyadenylation Code},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {379},
year = {2017},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-56970-3\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/LeungDF17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LiWYX17,
author = {Zhen Li and
Sheng Wang and
Yizhou Yu and
Jinbo Xu},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {Folding Membrane Proteins by Deep Transfer Learning},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {380--382},
year = {2017},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-56970-3\%2F1.pdf},
timestamp = {Mon, 03 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LiWYX17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LuoZZYZK0CZ17,
author = {Yunan Luo and
Xinbin Zhao and
Jingtian Zhou and
Jinling Yang and
Yanqing Zhang and
Wenhua Kuang and
Jian Peng and
Ligong Chen and
Jianyang Zeng},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {A Network Integration Approach for Drug-Target Interaction Prediction
and Computational Drug Repositioning from Heterogeneous Information},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {383--384},
year = {2017},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-56970-3\%2F1.pdf},
timestamp = {Wed, 02 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LuoZZYZK0CZ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MatlakS17,
author = {Dariusz Matlak and
Ewa Szczurek},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {Epistasis in Genomic and Survival Data of Cancer Patients},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {385--386},
year = {2017},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-56970-3\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/MatlakS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/NaseriLZZ17,
author = {Ardalan Naseri and
Xiaoming Liu and
Shaojie Zhang and
Degui Zhi},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {Ultra-Fast Identity by Descent Detection in Biobank-Scale Cohorts
Using Positional Burrows-Wheeler Transform},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {387--388},
year = {2017},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-56970-3\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/NaseriLZZ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/NessSMV17,
author = {Robert Osazuwa Ness and
Karen Sachs and
Parag Mallick and
Olga Vitek},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {A Bayesian Active Learning Experimental Design for Inferring Signaling
Networks},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {134--156},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-56970-3\_9},
doi = {10.1007/978-3-319-56970-3\_9},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/NessSMV17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/OjewoleJFD17,
author = {Adegoke A. Ojewole and
Jonathan D. Jou and
Vance G. Fowler and
Bruce Randall Donald},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {BBK\({}^{\mbox{*}}\) (Branch and Bound over K\({}^{\mbox{*}}\)): {A}
Provable and Efficient Ensemble-Based Algorithm to Optimize Stability
and Binding Affinity over Large Sequence Spaces},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {157--172},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-56970-3\_10},
doi = {10.1007/978-3-319-56970-3\_10},
timestamp = {Tue, 23 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/OjewoleJFD17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/OrensteinKFB17,
author = {Yaron Orenstein and
Ryan Kim and
Polly Fordyce and
Bonnie Berger},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {Joker de Bruijn: Sequence Libraries to Cover All k-mers Using Joker
Characters},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {389--390},
year = {2017},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-56970-3\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/OrensteinKFB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PatenNGH17,
author = {Benedict Paten and
Adam M. Novak and
Erik Garrison and
Glenn Hickey},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {Superbubbles, Ultrabubbles and Cacti},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {173--189},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-56970-3\_11},
doi = {10.1007/978-3-319-56970-3\_11},
timestamp = {Wed, 25 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PatenNGH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PockrandtER17,
author = {Christopher Pockrandt and
Marcel Ehrhardt and
Knut Reinert},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {EPR-Dictionaries: {A} Practical and Fast Data Structure for Constant
Time Searches in Unidirectional and Bidirectional {FM} Indices},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {190--206},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-56970-3\_12},
doi = {10.1007/978-3-319-56970-3\_12},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PockrandtER17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PopicKSB17,
author = {Victoria Popic and
Volodymyr Kuleshov and
Michael P. Snyder and
Serafim Batzoglou},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {{GATTACA:} Lightweight Metagenomic Binning Using Kmer Counting},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {391--392},
year = {2017},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-56970-3\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/PopicKSB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/RahmaniSSEH17,
author = {Elior Rahmani and
Regev Schweiger and
Liat Shenhav and
Eleazar Eskin and
Eran Halperin},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {A Bayesian Framework for Estimating Cell Type Composition from {DNA}
Methylation Without the Need for Methylation Reference},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {207--223},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-56970-3\_13},
doi = {10.1007/978-3-319-56970-3\_13},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/RahmaniSSEH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/RajaramanM17,
author = {Ashok Rajaraman and
Jian Ma},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {Towards Recovering Allele-Specific Cancer Genome Graphs},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {224--240},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-56970-3\_14},
doi = {10.1007/978-3-319-56970-3\_14},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/RajaramanM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SchweigerFRSRH17,
author = {Regev Schweiger and
Eyal Fisher and
Elior Rahmani and
Liat Shenhav and
Saharon Rosset and
Eran Halperin},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {Using Stochastic Approximation Techniques to Efficiently Construct
Confidence Intervals for Heritability},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {241--256},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-56970-3\_15},
doi = {10.1007/978-3-319-56970-3\_15},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SchweigerFRSRH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ShekharRM17,
author = {Shubhanshu Shekhar and
Sebastien Roch and
Siavash Mirarab},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {Species Tree Estimation Using {ASTRAL:} How Many Genes Are Enough?},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {393--395},
year = {2017},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-56970-3\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/ShekharRM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ShlemovBBSP17,
author = {Alexander Shlemov and
Sergey Bankevich and
Andrey V. Bzikadze and
Yana Safonova and
Pavel A. Pevzner},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {Reconstructing Antibody Repertoires from Error-Prone Immunosequencing
Datasets},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {396--397},
year = {2017},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-56970-3\%2F1.pdf},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/ShlemovBBSP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SolomonK17,
author = {Brad Solomon and
Carl Kingsford},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {Improved Search of Large Transcriptomic Sequencing Databases Using
Split Sequence Bloom Trees},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {257--271},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-56970-3\_16},
doi = {10.1007/978-3-319-56970-3\_16},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SolomonK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SunHCM17,
author = {Chen Sun and
Robert S. Harris and
Rayan Chikhi and
Paul Medvedev},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {AllSome Sequence Bloom Trees},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {272--286},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-56970-3\_17},
doi = {10.1007/978-3-319-56970-3\_17},
timestamp = {Sat, 06 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/SunHCM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WangCLOP17,
author = {Yijie Wang and
Dong{-}Yeon Cho and
Hangnoh Lee and
Brian Oliver and
Teresa M. Przytycka},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {NetREX: Network Rewiring Using EXpression - Towards Context Specific
Regulatory Networks},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {398--399},
year = {2017},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-56970-3\%2F1.pdf},
timestamp = {Mon, 01 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/WangCLOP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WangYYKNRSSH17,
author = {Xiaoqian Wang and
Jingwen Yan and
Xiaohui Yao and
Sungeun Kim and
Kwangsik Nho and
Shannon L. Risacher and
Andrew J. Saykin and
Li Shen and
Heng Huang},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {Longitudinal Genotype-Phenotype Association Study via Temporal Structure
Auto-learning Predictive Model},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {287--302},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-56970-3\_18},
doi = {10.1007/978-3-319-56970-3\_18},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WangYYKNRSSH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WelchHP17,
author = {Joshua D. Welch and
Alexander J. Hartemink and
Jan F. Prins},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {E Pluribus Unum: United States of Single Cells},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {400--401},
year = {2017},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-56970-3\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/WelchHP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WuHJE17,
author = {Yue Wu and
Farhad Hormozdiari and
Jong Wha J. Joo and
Eleazar Eskin},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {Improving Imputation Accuracy by Inferring Causal Variants in Genetic
Studies},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {303--317},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-56970-3\_19},
doi = {10.1007/978-3-319-56970-3\_19},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WuHJE17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZaccariaEKR17,
author = {Simone Zaccaria and
Mohammed El{-}Kebir and
Gunnar W. Klau and
Benjamin J. Raphael},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {The Copy-Number Tree Mixture Deconvolution Problem and Applications
to Multi-sample Bulk Sequencing Tumor Data},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {318--335},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-56970-3\_20},
doi = {10.1007/978-3-319-56970-3\_20},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZaccariaEKR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhangHZHJZ17,
author = {Sai Zhang and
Hailin Hu and
Jingtian Zhou and
Xuan He and
Tao Jiang and
Jianyang Zeng},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {{ROSE:} {A} Deep Learning Based Framework for Predicting Ribosome
Stalling},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {402--403},
year = {2017},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-56970-3\%2F1.pdf},
timestamp = {Wed, 03 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/ZhangHZHJZ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhaoLSAG17,
author = {Jingkang Zhao and
Dongshunyi Li and
Jungkyun Seo and
Andrew S. Allen and
Raluca Gord{\^{a}}n},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {Quantifying the Impact of Non-coding Variants on Transcription Factor-DNA
Binding},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {336--352},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-56970-3\_21},
doi = {10.1007/978-3-319-56970-3\_21},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZhaoLSAG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/recomb/2017,
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-56970-3},
doi = {10.1007/978-3-319-56970-3},
isbn = {978-3-319-56969-7},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/2017.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/0001SB16,
author = {Sean Simmons and
S. Cenk Sahinalp and
Bonnie Berger},
editor = {Mona Singh},
title = {Enabling Privacy Preserving {GWAS} in Heterogeneous Human Populations},
booktitle = {Research in Computational Molecular Biology - 20th Annual Conference,
{RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9649},
pages = {246--247},
publisher = {Springer},
year = {2016},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-31957-5\%2F1.pdf},
timestamp = {Thu, 19 Sep 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/0001SB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ArtyomenkoWMESZ16,
author = {Alexander Artyomenko and
Nicholas C. Wu and
Serghei Mangul and
Eleazar Eskin and
Ren Sun and
Alex Zelikovsky},
editor = {Mona Singh},
title = {Long Single-Molecule Reads Can Resolve the Complexity of the Influenza
Virus Composed of Rare, Closely Related Mutant Variants},
booktitle = {Research in Computational Molecular Biology - 20th Annual Conference,
{RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9649},
pages = {164--175},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-31957-5\_12},
doi = {10.1007/978-3-319-31957-5\_12},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/ArtyomenkoWMESZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/CristeaKB16,
author = {Simona Cristea and
Jack Kuipers and
Niko Beerenwinkel},
editor = {Mona Singh},
title = {pathTiMEx: Joint Inference of Mutually Exclusive Cancer Pathways and
Their Dependencies in Tumor Progression},
booktitle = {Research in Computational Molecular Biology - 20th Annual Conference,
{RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9649},
pages = {65--82},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-31957-5\_5},
doi = {10.1007/978-3-319-31957-5\_5},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/CristeaKB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DaoHWTZCRBBP16,
author = {Phuong Dao and
Jan Hoinka and
Yijie Wang and
Mayumi Takahashi and
Jiehua Zhou and
Fabrizio Costa and
John Rossi and
John Burnett and
Rolf Backofen and
Teresa M. Przytycka},
editor = {Mona Singh},
title = {AptaTRACE: Elucidating Sequence-Structure Binding Motifs by Uncovering
Selection Trends in {HT-SELEX} Experiments},
booktitle = {Research in Computational Molecular Biology - 20th Annual Conference,
{RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9649},
pages = {261--262},
publisher = {Springer},
year = {2016},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-31957-5\%2F1.pdf},
timestamp = {Mon, 01 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/DaoHWTZCRBBP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DonmezMWGCS16,
author = {Nilgun Donmez and
Salem Malikic and
Alexander W. Wyatt and
Martin E. Gleave and
Colin C. Collins and
S{\"{u}}leyman Cenk Sahinalp},
editor = {Mona Singh},
title = {Clonality Inference from Single Tumor Samples Using Low Coverage Sequence
Data},
booktitle = {Research in Computational Molecular Biology - 20th Annual Conference,
{RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9649},
pages = {83--94},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-31957-5\_6},
doi = {10.1007/978-3-319-31957-5\_6},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DonmezMWGCS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/El-KebirSOR16,
author = {Mohammed El{-}Kebir and
Gryte Satas and
Layla Oesper and
Benjamin J. Raphael},
editor = {Mona Singh},
title = {Multi-state Perfect Phylogeny Mixture Deconvolution and Applications
to Cancer Sequencing},
booktitle = {Research in Computational Molecular Biology - 20th Annual Conference,
{RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9649},
pages = {251},
publisher = {Springer},
year = {2016},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-31957-5\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/El-KebirSOR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/FusiL16,
author = {Nicol{\'{o}} Fusi and
Jennifer Listgarten},
editor = {Mona Singh},
title = {Flexible Modelling of Genetic Effects on Function-Valued Traits},
booktitle = {Research in Computational Molecular Biology - 20th Annual Conference,
{RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9649},
pages = {95--110},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-31957-5\_7},
doi = {10.1007/978-3-319-31957-5\_7},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/FusiL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GunawanDZ16,
author = {Andreas D. M. Gunawan and
Bhaskar DasGupta and
Louxin Zhang},
editor = {Mona Singh},
title = {Locating a Tree in a Reticulation-Visible Network in Cubic Time},
booktitle = {Research in Computational Molecular Biology - 20th Annual Conference,
{RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9649},
pages = {266},
publisher = {Springer},
year = {2016},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-31957-5\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/GunawanDZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HallenJD16,
author = {Mark A. Hallen and
Jonathan D. Jou and
Bruce Randall Donald},
editor = {Mona Singh},
title = {{LUTE} (Local Unpruned Tuple Expansion): Accurate Continuously Flexible
Protein Design with General Energy Functions and Rigid-rotamer-like
Efficiency},
booktitle = {Research in Computational Molecular Biology - 20th Annual Conference,
{RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9649},
pages = {122--136},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-31957-5\_9},
doi = {10.1007/978-3-319-31957-5\_9},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HallenJD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HansenV16,
author = {Tommy Hansen and
Fabio Vandin},
editor = {Mona Singh},
title = {Finding Mutated Subnetworks Associated with Survival in Cancer},
booktitle = {Research in Computational Molecular Biology - 20th Annual Conference,
{RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9649},
pages = {250},
publisher = {Springer},
year = {2016},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-31957-5\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/HansenV16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HashemifarHX16,
author = {Somaye Hashemifar and
Qixing Huang and
Jinbo Xu},
editor = {Mona Singh},
title = {Joint Alignment of Multiple Protein-Protein Interaction Networks via
Convex Optimization},
booktitle = {Research in Computational Molecular Biology - 20th Annual Conference,
{RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9649},
pages = {267--269},
publisher = {Springer},
year = {2016},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-31957-5\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/HashemifarHX16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HormozdiariHKMV16,
author = {Farhad Hormozdiari and
Fereydoun Hormozdiari and
Carl Kingsford and
Paul Medvedev and
Fabio Vandin},
editor = {Mona Singh},
title = {The Second Decade of the International Conference on Research in Computational
Molecular Biology {(RECOMB)}},
booktitle = {Research in Computational Molecular Biology - 20th Annual Conference,
{RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9649},
pages = {3--16},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-31957-5\_1},
doi = {10.1007/978-3-319-31957-5\_1},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HormozdiariHKMV16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/JahnKB16,
author = {Katharina Jahn and
Jack Kuipers and
Niko Beerenwinkel},
editor = {Mona Singh},
title = {Tree Inference for Single-Cell Data},
booktitle = {Research in Computational Molecular Biology - 20th Annual Conference,
{RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9649},
pages = {252},
publisher = {Springer},
year = {2016},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-31957-5\%2F1.pdf},
timestamp = {Thu, 09 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/JahnKB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KowadaDDS16,
author = {Luis Antonio Brasil Kowada and
Daniel Doerr and
Simone Dantas and
Jens Stoye},
editor = {Mona Singh},
title = {New Genome Similarity Measures Based on Conserved Gene Adjacencies},
booktitle = {Research in Computational Molecular Biology - 20th Annual Conference,
{RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9649},
pages = {204--224},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-31957-5\_15},
doi = {10.1007/978-3-319-31957-5\_15},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/KowadaDDS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KshirsagarCKM16,
author = {Meghana Kshirsagar and
Jaime G. Carbonell and
Judith Klein{-}Seetharaman and
Keerthiram Murugesan},
editor = {Mona Singh},
title = {Multitask Matrix Completion for Learning Protein Interactions Across
Diseases},
booktitle = {Research in Computational Molecular Biology - 20th Annual Conference,
{RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9649},
pages = {53--64},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-31957-5\_4},
doi = {10.1007/978-3-319-31957-5\_4},
timestamp = {Mon, 31 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KshirsagarCKM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LiZS016,
author = {Yang Li and
Shiguo Zhou and
David C. Schwartz and
Jian Ma},
editor = {Mona Singh},
title = {Allele-Specific Quantification of Structural Variations in Cancer
Genomes},
booktitle = {Research in Computational Molecular Biology - 20th Annual Conference,
{RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9649},
pages = {264},
publisher = {Springer},
year = {2016},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-31957-5\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/LiZS016.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LinSYCP16,
author = {Yu Lin and
Max W. Shen and
Jeffrey Yuan and
Mark Chaisson and
Pavel A. Pevzner},
editor = {Mona Singh},
title = {Assembly of Long Error-Prone Reads Using de Bruijn Graphs},
booktitle = {Research in Computational Molecular Biology - 20th Annual Conference,
{RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9649},
pages = {265},
publisher = {Springer},
year = {2016},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-31957-5\%2F1.pdf},
timestamp = {Tue, 31 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LinSYCP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LuoZB016,
author = {Yunan Luo and
Jianyang Zeng and
Bonnie Berger and
Jian Peng},
editor = {Mona Singh},
title = {Low-Density Locality-Sensitive Hashing Boosts Metagenomic Binning},
booktitle = {Research in Computational Molecular Biology - 20th Annual Conference,
{RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9649},
pages = {255--257},
publisher = {Springer},
year = {2016},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-31957-5\%2F1.pdf},
timestamp = {Wed, 02 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LuoZB016.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MaZW0016,
author = {Xiuli Ma and
Guangyu Zhou and
Jingjing Wang and
Jian Peng and
Jiawei Han},
editor = {Mona Singh},
title = {Complexes Detection in Biological Networks via Diversified Dense Subgraphs
Mining},
booktitle = {Research in Computational Molecular Biology - 20th Annual Conference,
{RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9649},
pages = {270--272},
publisher = {Springer},
year = {2016},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-31957-5\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/MaZW0016.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/NurkMKP16,
author = {Sergey Nurk and
Dmitry Meleshko and
Anton I. Korobeynikov and
Pavel A. Pevzner},
editor = {Mona Singh},
title = {metaSPAdes: {A} New Versatile de novo Metagenomics Assembler},
booktitle = {Research in Computational Molecular Biology - 20th Annual Conference,
{RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9649},
pages = {258},
publisher = {Springer},
year = {2016},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-31957-5\%2F1.pdf},
timestamp = {Wed, 04 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/NurkMKP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PellowFK16,
author = {David Pellow and
Darya Filippova and
Carl Kingsford},
editor = {Mona Singh},
title = {Improving Bloom Filter Performance on Sequence Data Using k -mer Bloom
Filters},
booktitle = {Research in Computational Molecular Biology - 20th Annual Conference,
{RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9649},
pages = {137--151},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-31957-5\_10},
doi = {10.1007/978-3-319-31957-5\_10},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PellowFK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PopicB16,
author = {Victoria Popic and
Serafim Batzoglou},
editor = {Mona Singh},
title = {Efficient Privacy-Preserving Read Mapping Using Locality Sensitive
Hashing and Secure Kmer Voting},
booktitle = {Research in Computational Molecular Biology - 20th Annual Conference,
{RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9649},
pages = {248--249},
publisher = {Springer},
year = {2016},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-31957-5\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/PopicB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SahlinFA16,
author = {Kristoffer Sahlin and
Mattias Fr{\aa}nberg and
Lars Arvestad},
editor = {Mona Singh},
title = {Structural Variation Detection with Read Pair Information - An Improved
Null-Hypothesis Reduces Bias},
booktitle = {Research in Computational Molecular Biology - 20th Annual Conference,
{RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9649},
pages = {176--188},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-31957-5\_13},
doi = {10.1007/978-3-319-31957-5\_13},
timestamp = {Mon, 16 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SahlinFA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SeferJ16,
author = {Emre Sefer and
Ziv Bar{-}Joseph},
editor = {Mona Singh},
title = {Shall We Dense? Comparing Design Strategies for Time Series Expression
Experiments},
booktitle = {Research in Computational Molecular Biology - 20th Annual Conference,
{RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9649},
pages = {244--245},
publisher = {Springer},
year = {2016},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-31957-5\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/SeferJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ShaoM16,
author = {Mingfu Shao and
Bernard M. E. Moret},
editor = {Mona Singh},
title = {On Computing Breakpoint Distances for Genomes with Duplicate Genes},
booktitle = {Research in Computational Molecular Biology - 20th Annual Conference,
{RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9649},
pages = {189--203},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-31957-5\_14},
doi = {10.1007/978-3-319-31957-5\_14},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ShaoM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SinghRNB16,
author = {Shashank Singh and
Sabrina Rashid and
Saket Navlakha and
Ziv Bar{-}Joseph},
editor = {Mona Singh},
title = {Distributed Gradient Descent in Bacterial Food Search},
booktitle = {Research in Computational Molecular Biology - 20th Annual Conference,
{RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9649},
pages = {259--260},
publisher = {Springer},
year = {2016},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-31957-5\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/SinghRNB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SobihTM16,
author = {Ahmed Sobih and
Alexandru I. Tomescu and
Veli M{\"{a}}kinen},
editor = {Mona Singh},
title = {MetaFlow: Metagenomic Profiling Based on Whole-Genome Coverage Analysis
with Min-Cost Flows},
booktitle = {Research in Computational Molecular Biology - 20th Annual Conference,
{RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9649},
pages = {111--121},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-31957-5\_8},
doi = {10.1007/978-3-319-31957-5\_8},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SobihTM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SteuermanG16,
author = {Yael Steuerman and
Irit Gat{-}Viks},
editor = {Mona Singh},
title = {Revealing the Genetic Basis of Immune Traits in the Absence of Experimental
Immunophenotyping},
booktitle = {Research in Computational Molecular Biology - 20th Annual Conference,
{RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9649},
pages = {242--243},
publisher = {Springer},
year = {2016},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-31957-5\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/SteuermanG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/TomescuM16,
author = {Alexandru I. Tomescu and
Paul Medvedev},
editor = {Mona Singh},
title = {Safe and Complete Contig Assembly Via Omnitigs},
booktitle = {Research in Computational Molecular Biology - 20th Annual Conference,
{RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9649},
pages = {152--163},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-31957-5\_11},
doi = {10.1007/978-3-319-31957-5\_11},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/TomescuM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/TsirogiannisS16,
author = {Constantinos Tsirogiannis and
Brody Sandel},
editor = {Mona Singh},
title = {Fast Phylogenetic Biodiversity Computations Under a Non-uniform Random
Distribution},
booktitle = {Research in Computational Molecular Biology - 20th Annual Conference,
{RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9649},
pages = {225--236},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-31957-5\_16},
doi = {10.1007/978-3-319-31957-5\_16},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/TsirogiannisS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WangMK16,
author = {Hao Wang and
Joel McManus and
Carl Kingsford},
editor = {Mona Singh},
title = {Accurate Recovery of Ribosome Positions Reveals Slow Translation of
Wobble-Pairing Codons in Yeast},
booktitle = {Research in Computational Molecular Biology - 20th Annual Conference,
{RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9649},
pages = {37--52},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-31957-5\_3},
doi = {10.1007/978-3-319-31957-5\_3},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WangMK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WelchLWLLPQHP16,
author = {Joshua D. Welch and
Ziqing Liu and
Li Wang and
Junjie Lu and
Paul Lerou and
Jeremy E. Purvis and
Li Qian and
Alexander J. Hartemink and
Jan F. Prins},
editor = {Mona Singh},
title = {{SLICER:} Inferring Branched, Nonlinear Cellular Trajectories from
Single Cell RNA-seq Data},
booktitle = {Research in Computational Molecular Biology - 20th Annual Conference,
{RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9649},
pages = {239--240},
publisher = {Springer},
year = {2016},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-31957-5\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/WelchLWLLPQHP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WiedenhoeftBS16,
author = {John Wiedenhoeft and
Eric Brugel and
Alexander Schliep},
editor = {Mona Singh},
title = {Fast Bayesian Inference of Copy Number Variants Using Hidden Markov
Models with Wavelet Compression},
booktitle = {Research in Computational Molecular Biology - 20th Annual Conference,
{RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9649},
pages = {263},
publisher = {Springer},
year = {2016},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-31957-5\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/WiedenhoeftBS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/YangC016,
author = {Yuqing Yang and
Ning Chen and
Ting Chen},
editor = {Mona Singh},
title = {mLDM: {A} New Hierarchical Bayesian Statistical Model for Sparse Microbial
Association Discovery},
booktitle = {Research in Computational Molecular Biology - 20th Annual Conference,
{RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9649},
pages = {253--254},
publisher = {Springer},
year = {2016},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-31957-5\%2F1.pdf},
timestamp = {Fri, 24 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/YangC016.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZouZO16,
author = {Chenchen Zou and
Yuping Zhang and
Zhengqing Ouyang},
editor = {Mona Singh},
title = {Multi-track Modeling for Genome-Scale Reconstruction of 3D Chromatin
Structure from Hi-C Data},
booktitle = {Research in Computational Molecular Biology - 20th Annual Conference,
{RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9649},
pages = {241},
publisher = {Springer},
year = {2016},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-31957-5\%2F1.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/ZouZO16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZuoCK16,
author = {Chandler Zuo and
Kailei Chen and
S{\"{u}}nd{\"{u}}z Keles},
editor = {Mona Singh},
title = {A MAD-Bayes Algorithm for State-Space Inference and Clustering with
Application to Querying Large Collections of ChIP-Seq Data Sets},
booktitle = {Research in Computational Molecular Biology - 20th Annual Conference,
{RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9649},
pages = {19--36},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-31957-5\_2},
doi = {10.1007/978-3-319-31957-5\_2},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZuoCK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/recomb/2016,
editor = {Mona Singh},
title = {Research in Computational Molecular Biology - 20th Annual Conference,
{RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9649},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-31957-5},
doi = {10.1007/978-3-319-31957-5},
isbn = {978-3-319-31956-8},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/2016.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/AluruAT15,
author = {Srinivas Aluru and
Alberto Apostolico and
Sharma V. Thankachan},
editor = {Teresa M. Przytycka},
title = {Efficient Alignment Free Sequence Comparison with Bounded Mismatches},
booktitle = {Research in Computational Molecular Biology - 19th Annual International
Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9029},
pages = {1--12},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16706-0\_1},
doi = {10.1007/978-3-319-16706-0\_1},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/AluruAT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/AmirCW15,
author = {Naama Amir and
Dan Cohen and
Haim J. Wolfson},
editor = {Teresa M. Przytycka},
title = {DockStar: {A} Novel {ILP} Based Integrative Method for Structural
Modelling of Multimolecular Protein Complexes (Extended Abstract)},
booktitle = {Research in Computational Molecular Biology - 19th Annual International
Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9029},
pages = {13--15},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16706-0\_2},
doi = {10.1007/978-3-319-16706-0\_2},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/AmirCW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Ben-BassatC15,
author = {Ilan Ben{-}Bassat and
Benny Chor},
editor = {Teresa M. Przytycka},
title = {{CRISPR} Detection from Short Reads Using Partial Overlap Graphs},
booktitle = {Research in Computational Molecular Biology - 19th Annual International
Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9029},
pages = {16--27},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16706-0\_3},
doi = {10.1007/978-3-319-16706-0\_3},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Ben-BassatC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BergerYB15,
author = {Emily Berger and
Deniz Y{\"{o}}r{\"{u}}koglu and
Bonnie Berger},
editor = {Teresa M. Przytycka},
title = {HapTree-X: An Integrative Bayesian Framework for Haplotype Reconstruction
from Transcriptome and Genome Sequencing Data},
booktitle = {Research in Computational Molecular Biology - 19th Annual International
Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9029},
pages = {28--29},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16706-0\_4},
doi = {10.1007/978-3-319-16706-0\_4},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BergerYB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BisharaLHWNWSB15,
author = {Alex Bishara and
Yuling Liu and
Dorna Kashef Haghighi and
Ziming Weng and
Daniel E. Newburger and
Robert B. West and
Arend Sidow and
Serafim Batzoglou},
editor = {Teresa M. Przytycka},
title = {Read Clouds Uncover Variation in Complex Regions of the Human Genome},
booktitle = {Research in Computational Molecular Biology - 19th Annual International
Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9029},
pages = {30--31},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16706-0\_5},
doi = {10.1007/978-3-319-16706-0\_5},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BisharaLHWNWSB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BiswasMLDJ15,
author = {Surojit Biswas and
Meredith McDonald and
Derek S. Lundberg and
Jeffery L. Dangl and
Vladimir Jojic},
editor = {Teresa M. Przytycka},
title = {Learning Microbial Interaction Networks from Metagenomic Count Data},
booktitle = {Research in Computational Molecular Biology - 19th Annual International
Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9029},
pages = {32--43},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16706-0\_6},
doi = {10.1007/978-3-319-16706-0\_6},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BiswasMLDJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BonissoneP15,
author = {Stefano Bonissone and
Pavel A. Pevzner},
editor = {Teresa M. Przytycka},
title = {Immunoglobulin Classification Using the Colored Antibody Graph},
booktitle = {Research in Computational Molecular Biology - 19th Annual International
Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9029},
pages = {44--59},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16706-0\_7},
doi = {10.1007/978-3-319-16706-0\_7},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BonissoneP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/CanzarAWRK15,
author = {Stefan Canzar and
Sandro Andreotti and
David Weese and
Knut Reinert and
Gunnar W. Klau},
editor = {Teresa M. Przytycka},
title = {{CIDANE:} Comprehensive Isoform Discovery and Abundance Estimation},
booktitle = {Research in Computational Molecular Biology - 19th Annual International
Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9029},
pages = {60--61},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16706-0\_8},
doi = {10.1007/978-3-319-16706-0\_8},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/CanzarAWRK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChoBP15,
author = {Hyunghoon Cho and
Bonnie Berger and
Jian Peng},
editor = {Teresa M. Przytycka},
title = {Diffusion Component Analysis: Unraveling Functional Topology in Biological
Networks},
booktitle = {Research in Computational Molecular Biology - 19th Annual International
Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9029},
pages = {62--64},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16706-0\_9},
doi = {10.1007/978-3-319-16706-0\_9},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ChoBP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DuhrkopB15,
author = {Kai D{\"{u}}hrkop and
Sebastian B{\"{o}}cker},
editor = {Teresa M. Przytycka},
title = {Fragmentation Trees Reloaded},
booktitle = {Research in Computational Molecular Biology - 19th Annual International
Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9029},
pages = {65--79},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16706-0\_10},
doi = {10.1007/978-3-319-16706-0\_10},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DuhrkopB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/FonsecaBB15,
author = {Rasmus Fonseca and
Henry van den Bedem and
Julie Bernauer},
editor = {Teresa M. Przytycka},
title = {KGSrna: Efficient 3D Kinematics-Based Sampling for Nucleic Acids},
booktitle = {Research in Computational Molecular Biology - 19th Annual International
Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9029},
pages = {80--95},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16706-0\_11},
doi = {10.1007/978-3-319-16706-0\_11},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/FonsecaBB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GambetteGLVZ15,
author = {Philippe Gambette and
Andreas D. M. Gunawan and
Anthony Labarre and
St{\'{e}}phane Vialette and
Louxin Zhang},
editor = {Teresa M. Przytycka},
title = {Locating a Tree in a Phylogenetic Network in Quadratic Time},
booktitle = {Research in Computational Molecular Biology - 19th Annual International
Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9029},
pages = {96--107},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16706-0\_12},
doi = {10.1007/978-3-319-16706-0\_12},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/GambetteGLVZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GongZWGZ15,
author = {Huichao Gong and
Sai Zhang and
Jiangdian Wang and
Haipeng Gong and
Jianyang Zeng},
editor = {Teresa M. Przytycka},
title = {Constructing Structure Ensembles of Intrinsically Disordered Proteins
from Chemical Shift Data},
booktitle = {Research in Computational Molecular Biology - 19th Annual International
Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9029},
pages = {108--121},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16706-0\_13},
doi = {10.1007/978-3-319-16706-0\_13},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/GongZWGZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HallenD15,
author = {Mark Hallen and
Bruce Randall Donald},
editor = {Teresa M. Przytycka},
title = {Comets (Constrained Optimization of Multistate Energies by Tree Search):
{A} Provable and Efficient Algorithm to Optimize Binding Affinity
and Specificity with Respect to Sequence},
booktitle = {Research in Computational Molecular Biology - 19th Annual International
Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9029},
pages = {122--135},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16706-0\_14},
doi = {10.1007/978-3-319-16706-0\_14},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HallenD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/JooKOFPLE15,
author = {Jong Wha J. Joo and
Eun Yong Kang and
Elin Org and
Nicholas A. Furlotte and
Brian Parks and
Aldons J. Lusis and
Eleazar Eskin},
editor = {Teresa M. Przytycka},
title = {Efficient and Accurate Multiple-Phenotypes Regression Method for High
Dimensional Data Considering Population Structure},
booktitle = {Research in Computational Molecular Biology - 19th Annual International
Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9029},
pages = {136--153},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16706-0\_15},
doi = {10.1007/978-3-319-16706-0\_15},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/JooKOFPLE15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/JouJGD15,
author = {Jonathan D. Jou and
Swati Jain and
Ivelin Georgiev and
Bruce Randall Donald},
editor = {Teresa M. Przytycka},
title = {BWM*: {A} Novel, Provable, Ensemble-Based Dynamic Programming Algorithm
for Sparse Approximations of Computational Protein Design},
booktitle = {Research in Computational Molecular Biology - 19th Annual International
Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9029},
pages = {154--166},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16706-0\_16},
doi = {10.1007/978-3-319-16706-0\_16},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/JouJGD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LeeLKX15,
author = {Seunghak Lee and
Aur{\'{e}}lie C. Lozano and
Prabhanjan Kambadur and
Eric P. Xing},
editor = {Teresa M. Przytycka},
title = {An Efficient Nonlinear Regression Approach for Genome-Wide Detection
of Marginal and Interacting Genetic Variations},
booktitle = {Research in Computational Molecular Biology - 19th Annual International
Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9029},
pages = {167--187},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16706-0\_17},
doi = {10.1007/978-3-319-16706-0\_17},
timestamp = {Fri, 29 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LeeLKX15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LeelanandaJK15,
author = {Sumudu P. Leelananda and
Robert L. Jernigan and
Andrzej Kloczkowski},
editor = {Teresa M. Przytycka},
title = {Exploration of Designability of Proteins Using Graph Features of Contact
Maps: Beyond Lattice Models},
booktitle = {Research in Computational Molecular Biology - 19th Annual International
Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9029},
pages = {188--201},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16706-0\_18},
doi = {10.1007/978-3-319-16706-0\_18},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LeelanandaJK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LeisersonWVR15,
author = {Mark D. M. Leiserson and
Hsin{-}Ta Wu and
Fabio Vandin and
Benjamin J. Raphael},
editor = {Teresa M. Przytycka},
title = {CoMEt: {A} Statistical Approach to Identify Combinations of Mutually
Exclusive Alterations in Cancer},
booktitle = {Research in Computational Molecular Biology - 19th Annual International
Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9029},
pages = {202--204},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16706-0\_19},
doi = {10.1007/978-3-319-16706-0\_19},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LeisersonWVR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LiCW15,
author = {Yifeng Li and
Chih{-}Yu Chen and
Wyeth W. Wasserman},
editor = {Teresa M. Przytycka},
title = {Deep Feature Selection: Theory and Application to Identify Enhancers
and Promoters},
booktitle = {Research in Computational Molecular Biology - 19th Annual International
Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9029},
pages = {205--217},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16706-0\_20},
doi = {10.1007/978-3-319-16706-0\_20},
timestamp = {Fri, 30 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LiCW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MaWWX15,
author = {Jianzhu Ma and
Sheng Wang and
Zhiyong Wang and
Jinbo Xu},
editor = {Teresa M. Przytycka},
title = {Protein Contact Prediction by Integrating Joint Evolutionary Coupling
Analysis and Supervised Learning},
booktitle = {Research in Computational Molecular Biology - 19th Annual International
Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9029},
pages = {218--221},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16706-0\_21},
doi = {10.1007/978-3-319-16706-0\_21},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MaWWX15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MandricZ15,
author = {Igor Mandric and
Alex Zelikovsky},
editor = {Teresa M. Przytycka},
title = {ScaffMatch: Scaffolding Algorithm Based on Maximum Weight Matching},
booktitle = {Research in Computational Molecular Biology - 19th Annual International
Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9029},
pages = {222--223},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16706-0\_22},
doi = {10.1007/978-3-319-16706-0\_22},
timestamp = {Wed, 25 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MandricZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ManescuK15,
author = {David Manescu and
Uri Keich},
editor = {Teresa M. Przytycka},
title = {A Symmetric Length-Aware Enrichment Test},
booktitle = {Research in Computational Molecular Biology - 19th Annual International
Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9029},
pages = {224--242},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16706-0\_23},
doi = {10.1007/978-3-319-16706-0\_23},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ManescuK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MazzaWRS15,
author = {Arnon Mazza and
Allon Wagner and
Eytan Ruppin and
Roded Sharan},
editor = {Teresa M. Przytycka},
title = {Functional Alignment of Metabolic Networks},
booktitle = {Research in Computational Molecular Biology - 19th Annual International
Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9029},
pages = {243--255},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16706-0\_24},
doi = {10.1007/978-3-319-16706-0\_24},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MazzaWRS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/McPhersonRCS15,
author = {Andrew W. McPherson and
Andrew Roth and
C{\'{e}}dric Chauve and
S{\"{u}}leyman Cenk Sahinalp},
editor = {Teresa M. Przytycka},
title = {Joint Inference of Genome Structure and Content in Heterogeneous Tumor
Samples},
booktitle = {Research in Computational Molecular Biology - 19th Annual International
Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9029},
pages = {256--258},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16706-0\_25},
doi = {10.1007/978-3-319-16706-0\_25},
timestamp = {Thu, 10 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/McPhersonRCS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/NguyenMKW15,
author = {Nam{-}phuong Nguyen and
Siavash Mirarab and
Keerthana Kumar and
Tandy J. Warnow},
editor = {Teresa M. Przytycka},
title = {Ultra-Large Alignments Using Ensembles of Hidden Markov Models},
booktitle = {Research in Computational Molecular Biology - 19th Annual International
Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9029},
pages = {259--260},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16706-0\_26},
doi = {10.1007/978-3-319-16706-0\_26},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/NguyenMKW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ParidaUYCKB15,
author = {Laxmi Parida and
Filippo Utro and
Deniz Y{\"{o}}r{\"{u}}koglu and
Anna Paola Carrieri and
David Kuhn and
Saugata Basu},
editor = {Teresa M. Przytycka},
title = {Topological Signatures for Population Admixture},
booktitle = {Research in Computational Molecular Biology - 19th Annual International
Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9029},
pages = {261--275},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16706-0\_27},
doi = {10.1007/978-3-319-16706-0\_27},
timestamp = {Mon, 16 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ParidaUYCKB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/RonenTAZRB15,
author = {Roy Ronen and
Glenn Tesler and
Ali Akbari and
Shay Zakov and
Noah A. Rosenberg and
Vineet Bafna},
editor = {Teresa M. Przytycka},
title = {Haplotype Allele Frequency {(HAF)} Score: Predicting Carriers of Ongoing
Selective Sweeps Without Knowledge of the Adaptive Allele},
booktitle = {Research in Computational Molecular Biology - 19th Annual International
Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9029},
pages = {276--280},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16706-0\_28},
doi = {10.1007/978-3-319-16706-0\_28},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/RonenTAZRB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SalmelaSMT15,
author = {Leena Salmela and
Kristoffer Sahlin and
Veli M{\"{a}}kinen and
Alexandru I. Tomescu},
editor = {Teresa M. Przytycka},
title = {Gap Filling as Exact Path Length Problem},
booktitle = {Research in Computational Molecular Biology - 19th Annual International
Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9029},
pages = {281--292},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16706-0\_29},
doi = {10.1007/978-3-319-16706-0\_29},
timestamp = {Mon, 16 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SalmelaSMT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SeferDK15,
author = {Emre Sefer and
Geet Duggal and
Carl Kingsford},
editor = {Teresa M. Przytycka},
title = {Deconvolution of Ensemble Chromatin Interaction Data Reveals the Latent
Mixing Structures in Cell Subpopulations},
booktitle = {Research in Computational Molecular Biology - 19th Annual International
Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9029},
pages = {293--308},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16706-0\_30},
doi = {10.1007/978-3-319-16706-0\_30},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SeferDK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ShaoM15,
author = {Mingfu Shao and
Bernard M. E. Moret},
editor = {Teresa M. Przytycka},
title = {A Fast and Exact Algorithm for the Exemplar Breakpoint Distance},
booktitle = {Research in Computational Molecular Biology - 19th Annual International
Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9029},
pages = {309--322},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16706-0\_31},
doi = {10.1007/978-3-319-16706-0\_31},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ShaoM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Temerinac-OttNM15,
author = {Maja Temerinac{-}Ott and
Armaghan W. Naik and
Robert F. Murphy},
editor = {Teresa M. Przytycka},
title = {Deciding When to Stop: Efficient Experimentation to Learn to Predict
Drug-Target Interactions (Extended Abstract)},
booktitle = {Research in Computational Molecular Biology - 19th Annual International
Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9029},
pages = {323--325},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16706-0\_32},
doi = {10.1007/978-3-319-16706-0\_32},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Temerinac-OttNM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/VandinRU15,
author = {Fabio Vandin and
Benjamin J. Raphael and
Eli Upfal},
editor = {Teresa M. Przytycka},
title = {On the Sample Complexity of Cancer Pathways Identification},
booktitle = {Research in Computational Molecular Biology - 19th Annual International
Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9029},
pages = {326--337},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16706-0\_33},
doi = {10.1007/978-3-319-16706-0\_33},
timestamp = {Mon, 16 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/VandinRU15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WilentzikG15,
author = {Roni Wilentzik and
Irit Gat{-}Viks},
editor = {Teresa M. Przytycka},
title = {A Novel Probabilistic Methodology for eQTL Analysis of Signaling Networks},
booktitle = {Research in Computational Molecular Biology - 19th Annual International
Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9029},
pages = {338--339},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16706-0\_34},
doi = {10.1007/978-3-319-16706-0\_34},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WilentzikG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/YangCP15,
author = {Shuo Yang and
Shai Carmi and
Itsik Pe'er},
editor = {Teresa M. Przytycka},
title = {Rapidly Registering Identity-by-Descent Across Ancestral Recombination
Graphs},
booktitle = {Research in Computational Molecular Biology - 19th Annual International
Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9029},
pages = {340--353},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16706-0\_35},
doi = {10.1007/978-3-319-16706-0\_35},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/YangCP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhouWZ15,
author = {Yichao Zhou and
Yuexin Wu and
Jianyang Zeng},
editor = {Teresa M. Przytycka},
title = {Computational Protein Design Using {AND/OR} Branch-and-Bound Search},
booktitle = {Research in Computational Molecular Biology - 19th Annual International
Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9029},
pages = {354--366},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16706-0\_36},
doi = {10.1007/978-3-319-16706-0\_36},
timestamp = {Wed, 02 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZhouWZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/recomb/2015,
editor = {Teresa M. Przytycka},
title = {Research in Computational Molecular Biology - 19th Annual International
Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9029},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16706-0},
doi = {10.1007/978-3-319-16706-0},
isbn = {978-3-319-16705-3},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/2015.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/AguiarMI14,
author = {Derek Aguiar and
Eric M. Morrow and
Sorin Istrail},
editor = {Roded Sharan},
title = {Tractatus: An Exact and Subquadratic Algorithm for Inferring Identical-by-Descent
Multi-shared Haplotype Tracts},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {1--17},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_1},
doi = {10.1007/978-3-319-05269-4\_1},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/AguiarMI14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BergerYPB14,
author = {Emily Berger and
Deniz Y{\"{o}}r{\"{u}}koglu and
Jian Peng and
Bonnie Berger},
editor = {Roded Sharan},
title = {HapTree: {A} Novel Bayesian Framework for Single Individual Polyplotyping
Using {NGS} Data},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {18--19},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_2},
doi = {10.1007/978-3-319-05269-4\_2},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BergerYPB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BloniarzTTJPYS14,
author = {Adam E. Bloniarz and
Ameet Talwalkar and
Jonathan Terhorst and
Michael I. Jordan and
David A. Patterson and
Bin Yu and
Yun S. Song},
editor = {Roded Sharan},
title = {Changepoint Analysis for Efficient Variant Calling},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {20--34},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_3},
doi = {10.1007/978-3-319-05269-4\_3},
timestamp = {Wed, 04 Sep 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BloniarzTTJPYS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChikhiLJSM14,
author = {Rayan Chikhi and
Antoine Limasset and
Shaun Jackman and
Jared T. Simpson and
Paul Medvedev},
editor = {Roded Sharan},
title = {On the Representation of de Bruijn Graphs},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {35--55},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_4},
doi = {10.1007/978-3-319-05269-4\_4},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ChikhiLJSM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChitsazA14,
author = {Hamidreza Chitsaz and
Mohammad Aminisharifabad},
editor = {Roded Sharan},
title = {Exact Learning of {RNA} Energy Parameters from Structure},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {56--68},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_5},
doi = {10.1007/978-3-319-05269-4\_5},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ChitsazA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/FuJM14,
author = {Chen{-}Ping Fu and
Vladimir Jojic and
Leonard McMillan},
editor = {Roded Sharan},
title = {An Alignment-Free Regression Approach for Estimating Allele-Specific
Expression Using RNA-Seq Data},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {69--84},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_6},
doi = {10.1007/978-3-319-05269-4\_6},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/FuJM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GuthalsBB14,
author = {Adrian Guthals and
Christina Boucher and
Nuno Bandeira},
editor = {Roded Sharan},
title = {The Generating Function Approach for Peptide Identification in Spectral
Networks},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {85--99},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_7},
doi = {10.1007/978-3-319-05269-4\_7},
timestamp = {Mon, 10 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/GuthalsBB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HarrisSKS14,
author = {Kelley Harris and
Sara Sheehan and
John A. Kamm and
Yun S. Song},
editor = {Roded Sharan},
title = {Decoding Coalescent Hidden Markov Models in Linear Time},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {100--114},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_8},
doi = {10.1007/978-3-319-05269-4\_8},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HarrisSKS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HoinkaBSGP14,
author = {Jan Hoinka and
Alexey Berezhnoy and
Zuben E. Sauna and
Eli Gilboa and
Teresa M. Przytycka},
editor = {Roded Sharan},
title = {AptaCluster - {A} Method to Cluster {HT-SELEX} Aptamer Pools and Lessons
from Its Application},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {115--128},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_9},
doi = {10.1007/978-3-319-05269-4\_9},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HoinkaBSGP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KamisettyGLB14,
author = {Hetunandan Kamisetty and
Bornika Ghosh and
Christopher James Langmead and
Chris Bailey{-}Kellogg},
editor = {Roded Sharan},
title = {Learning Sequence Determinants of Protein: Protein Interaction Specificity
with Sparse Graphical Models},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {129--143},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_10},
doi = {10.1007/978-3-319-05269-4\_10},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KamisettyGLB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KonagurthuKACL14,
author = {Arun Siddharth Konagurthu and
Parthan Kasarapu and
Lloyd Allison and
James H. Collier and
Arthur M. Lesk},
editor = {Roded Sharan},
title = {On Sufficient Statistics of Least-Squares Superposition of Vector
Sets},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {144--159},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_11},
doi = {10.1007/978-3-319-05269-4\_11},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KonagurthuKACL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LeungYC14,
author = {Henry C. M. Leung and
Siu{-}Ming Yiu and
Francis Y. L. Chin},
editor = {Roded Sharan},
title = {{IDBA-MTP:} {A} Hybrid MetaTranscriptomic Assembler Based on Protein
Information},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {160--172},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_12},
doi = {10.1007/978-3-319-05269-4\_12},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LeungYC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MaWWX14,
author = {Jianzhu Ma and
Sheng Wang and
Zhiyong Wang and
Jinbo Xu},
editor = {Roded Sharan},
title = {MRFalign: Protein Homology Detection through Alignment of Markov Random
Fields},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {173--174},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_13},
doi = {10.1007/978-3-319-05269-4\_13},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MaWWX14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MahonyEMSKMWG14,
author = {Shaun Mahony and
Matthew D. Edwards and
Esteban O. Mazzoni and
Richard Sherwood and
Akshay Kakumanu and
Carolyn A. Morrison and
Hynek Wichterle and
David K. Gifford},
editor = {Roded Sharan},
title = {An Integrated Model of Multiple-Condition ChIP-Seq Data Reveals Predeterminants
of Cdx2 Binding},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {175--176},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_14},
doi = {10.1007/978-3-319-05269-4\_14},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MahonyEMSKMWG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MirarabNW14,
author = {Siavash Mirarab and
Nam{-}phuong Nguyen and
Tandy J. Warnow},
editor = {Roded Sharan},
title = {{PASTA:} Ultra-Large Multiple Sequence Alignment},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {177--191},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_15},
doi = {10.1007/978-3-319-05269-4\_15},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MirarabNW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MullerBOS14,
author = {Arne C. M{\"{u}}ller and
Frank J. Bruggeman and
Brett G. Olivier and
Leen Stougie},
editor = {Roded Sharan},
title = {Fast Flux Module Detection Using Matroid Theory},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {192--206},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_16},
doi = {10.1007/978-3-319-05269-4\_16},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/MullerBOS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/NguyenHZREAHP14,
author = {Ngan Nguyen and
Glenn Hickey and
Daniel R. Zerbino and
Brian J. Raney and
Dent Earl and
Joel Armstrong and
David Haussler and
Benedict Paten},
editor = {Roded Sharan},
title = {Building a Pangenome Reference for a Population},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {207--221},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_17},
doi = {10.1007/978-3-319-05269-4\_17},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/NguyenHZREAHP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/NotoBMBS14,
author = {Keith Noto and
Carla E. Brodley and
Saeed Majidi and
Diana W. Bianchi and
Donna K. Slonim},
editor = {Roded Sharan},
title = {{CSAX:} Characterizing Systematic Anomalies in eXpression Data},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {222--236},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_18},
doi = {10.1007/978-3-319-05269-4\_18},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/NotoBMBS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PattersonMPISKS14,
author = {Murray Patterson and
Tobias Marschall and
Nadia Pisanti and
Leo van Iersel and
Leen Stougie and
Gunnar W. Klau and
Alexander Sch{\"{o}}nhuth},
editor = {Roded Sharan},
title = {WhatsHap: Haplotype Assembly for Future-Generation Sequencing Reads},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {237--249},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_19},
doi = {10.1007/978-3-319-05269-4\_19},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PattersonMPISKS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/RaphaelV14,
author = {Benjamin J. Raphael and
Fabio Vandin},
editor = {Roded Sharan},
title = {Simultaneous Inference of Cancer Pathways and Tumor Progression from
Cross-Sectional Mutation Data},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {250--264},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_20},
doi = {10.1007/978-3-319-05269-4\_20},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/RaphaelV14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SafonovaBP14,
author = {Yana Safonova and
Anton Bankevich and
Pavel A. Pevzner},
editor = {Roded Sharan},
title = {dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {265--279},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_21},
doi = {10.1007/978-3-319-05269-4\_21},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SafonovaBP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ShaoLM14,
author = {Mingfu Shao and
Yu Lin and
Bernard M. E. Moret},
editor = {Roded Sharan},
title = {An Exact Algorithm to Compute the {DCJ} Distance for Genomes with
Duplicate Genes},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {280--292},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_22},
doi = {10.1007/978-3-319-05269-4\_22},
timestamp = {Tue, 31 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ShaoLM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ShresthaHYWSDABRCHS14,
author = {Raunak Shrestha and
Ermin Hodzic and
Jake Yeung and
Kendric Wang and
Thomas Sauerwald and
Phuong Dao and
Shawn Anderson and
Himisha Beltran and
Mark A. Rubin and
Colin C. Collins and
Gholamreza Haffari and
S{\"{u}}leyman Cenk Sahinalp},
editor = {Roded Sharan},
title = {HIT'nDRIVE: Multi-driver Gene Prioritization Based on Hitting Time},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {293--306},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_23},
doi = {10.1007/978-3-319-05269-4\_23},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ShresthaHYWSDABRCHS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SzczurekB14,
author = {Ewa Szczurek and
Niko Beerenwinkel},
editor = {Roded Sharan},
title = {Modeling Mutual Exclusivity of Cancer Mutations},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {307--308},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_24},
doi = {10.1007/978-3-319-05269-4\_24},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SzczurekB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/TopferMBLSB14,
author = {Armin T{\"{o}}pfer and
Tobias Marschall and
Rowena A. Bull and
Fabio Luciani and
Alexander Sch{\"{o}}nhuth and
Niko Beerenwinkel},
editor = {Roded Sharan},
title = {Viral Quasispecies Assembly via Maximal Clique Enumeration},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {309--310},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_25},
doi = {10.1007/978-3-319-05269-4\_25},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/TopferMBLSB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WangHD14,
author = {Hua Wang and
Heng Huang and
Chris H. Q. Ding},
editor = {Roded Sharan},
title = {Correlated Protein Function Prediction via Maximization of Data-Knowledge
Consistency},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {311--325},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_26},
doi = {10.1007/978-3-319-05269-4\_26},
timestamp = {Mon, 24 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WangHD14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WangS14,
author = {Rui Wang and
Scott C. Schmidler},
editor = {Roded Sharan},
title = {Bayesian Multiple Protein Structure Alignment},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {326--339},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_27},
doi = {10.1007/978-3-319-05269-4\_27},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WangS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WangSSLE14,
author = {Zhanyong Wang and
Jae Hoon Sul and
Sagi Snir and
Jos{\'{e}} Antonio Lozano and
Eleazar Eskin},
editor = {Roded Sharan},
title = {Gene-Gene Interactions Detection Using a Two-Stage Model},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {340--355},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_28},
doi = {10.1007/978-3-319-05269-4\_28},
timestamp = {Fri, 23 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WangSSLE14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/XuZW14,
author = {Shutan Xu and
Shuxue Zou and
Lincong Wang},
editor = {Roded Sharan},
title = {A Geometric Clustering Algorithm and Its Applications to Structural
Data},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {356--370},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_29},
doi = {10.1007/978-3-319-05269-4\_29},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/XuZW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/YangHEP14,
author = {Wen{-}Yun Yang and
Farhad Hormozdiari and
Eleazar Eskin and
Bogdan Pasaniuc},
editor = {Roded Sharan},
title = {A Spatial-Aware Haplotype Copying Model with Applications to Genotype
Imputation},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {371--384},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_30},
doi = {10.1007/978-3-319-05269-4\_30},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/YangHEP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/YuYB14,
author = {Yun William Yu and
Deniz Y{\"{o}}r{\"{u}}koglu and
Bonnie Berger},
editor = {Roded Sharan},
title = {Traversing the k-mer Landscape of {NGS} Read Datasets for Quality
Score Sparsification},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {385--399},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_31},
doi = {10.1007/978-3-319-05269-4\_31},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/YuYB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZakovB14,
author = {Shay Zakov and
Vineet Bafna},
editor = {Roded Sharan},
title = {Reconstructing Breakage Fusion Bridge Architectures Using Noisy Copy
Numbers},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {400--417},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_32},
doi = {10.1007/978-3-319-05269-4\_32},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZakovB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhengZ14,
author = {Yu Zheng and
Louxin Zhang},
editor = {Roded Sharan},
title = {Reconciliation with Non-binary Gene Trees Revisited},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {418--432},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_33},
doi = {10.1007/978-3-319-05269-4\_33},
timestamp = {Tue, 12 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZhengZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhongWH14,
author = {Jianling Zhong and
Todd Wasson and
Alexander J. Hartemink},
editor = {Roded Sharan},
title = {Learning Protein-DNA Interaction Landscapes by Integrating Experimental
Data through Computational Models},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {433--447},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_34},
doi = {10.1007/978-3-319-05269-4\_34},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZhongWH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZitnikZ14,
author = {Marinka Zitnik and
Blaz Zupan},
editor = {Roded Sharan},
title = {Imputation of Quantitative Genetic Interactions in Epistatic MAPs
by Interaction Propagation Matrix Completion},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {448--462},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_35},
doi = {10.1007/978-3-319-05269-4\_35},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZitnikZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/recomb/2014,
editor = {Roded Sharan},
title = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4},
doi = {10.1007/978-3-319-05269-4},
isbn = {978-3-319-05268-7},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/2014.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BansalAK13,
author = {Mukul S. Bansal and
Eric J. Alm and
Manolis Kellis},
editor = {Minghua Deng and
Rui Jiang and
Fengzhu Sun and
Xuegong Zhang},
title = {Reconciliation Revisited: Handling Multiple Optima When Reconciling
with Duplication, Transfer, and Loss},
booktitle = {Research in Computational Molecular Biology - 17th Annual International
Conference, {RECOMB} 2013, Beijing, China, April 7-10, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7821},
pages = {1--13},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-37195-0\_1},
doi = {10.1007/978-3-642-37195-0\_1},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BansalAK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChenWL13,
author = {Shijian Chen and
Anqi Wang and
Lei M. Li},
editor = {Minghua Deng and
Rui Jiang and
Fengzhu Sun and
Xuegong Zhang},
title = {{SEME:} {A} Fast Mapper of Illumina Sequencing Reads with Statistical
Evaluation},
booktitle = {Research in Computational Molecular Biology - 17th Annual International
Conference, {RECOMB} 2013, Beijing, China, April 7-10, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7821},
pages = {14--29},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-37195-0\_2},
doi = {10.1007/978-3-642-37195-0\_2},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ChenWL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChoP13,
author = {Dong{-}Yeon Cho and
Teresa M. Przytycka},
editor = {Minghua Deng and
Rui Jiang and
Fengzhu Sun and
Xuegong Zhang},
title = {Dissecting Cancer Heterogeneity with a Probabilistic Genotype-Phenotype
Model},
booktitle = {Research in Computational Molecular Biology - 17th Annual International
Conference, {RECOMB} 2013, Beijing, China, April 7-10, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7821},
pages = {30--31},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-37195-0\_3},
doi = {10.1007/978-3-642-37195-0\_3},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ChoP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DengGWYZ13,
author = {Lei Deng and
Jihong Guan and
Xiaoming Wei and
Yuan Yi and
Shuigeng Zhou},
editor = {Minghua Deng and
Rui Jiang and
Fengzhu Sun and
Xuegong Zhang},
title = {Boosting Prediction Performance of Protein-Protein Interaction Hot
Spots by Using Structural Neighborhood Properties - (Extended Abstract)},
booktitle = {Research in Computational Molecular Biology - 17th Annual International
Conference, {RECOMB} 2013, Beijing, China, April 7-10, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7821},
pages = {333--344},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-37195-0\_32},
doi = {10.1007/978-3-642-37195-0\_32},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DengGWYZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/EskinHCRSEH13,
author = {Itamar Eskin and
Farhad Hormozdiari and
Luc{\'{\i}}a Conde and
Jacques Riby and
Chris Skibola and
Eleazar Eskin and
Eran Halperin},
editor = {Minghua Deng and
Rui Jiang and
Fengzhu Sun and
Xuegong Zhang},
title = {eALPS: Estimating Abundance Levels in Pooled Sequencing Using Available
Genotyping Data},
booktitle = {Research in Computational Molecular Biology - 17th Annual International
Conference, {RECOMB} 2013, Beijing, China, April 7-10, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7821},
pages = {32--44},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-37195-0\_4},
doi = {10.1007/978-3-642-37195-0\_4},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/EskinHCRSEH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/FaruqiBP13,
author = {Ali A. Faruqi and
William A. Bryant and
John W. Pinney},
editor = {Minghua Deng and
Rui Jiang and
Fengzhu Sun and
Xuegong Zhang},
title = {Analysis of Metabolic Evolution in Bacteria Using Whole-Genome Metabolic
Models},
booktitle = {Research in Computational Molecular Biology - 17th Annual International
Conference, {RECOMB} 2013, Beijing, China, April 7-10, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7821},
pages = {45--57},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-37195-0\_5},
doi = {10.1007/978-3-642-37195-0\_5},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/FaruqiBP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GuoLMW13,
author = {Fei Guo and
Shuai Cheng Li and
Wenji Ma and
Lusheng Wang},
editor = {Minghua Deng and
Rui Jiang and
Fengzhu Sun and
Xuegong Zhang},
title = {Detecting Protein Conformational Changes in Interactions via Scaling
Known Structures},
booktitle = {Research in Computational Molecular Biology - 17th Annual International
Conference, {RECOMB} 2013, Beijing, China, April 7-10, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7821},
pages = {58--74},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-37195-0\_6},
doi = {10.1007/978-3-642-37195-0\_6},
timestamp = {Tue, 12 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/GuoLMW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HeWHPE13,
author = {Dan He and
Zhanyong Wang and
Buhm Han and
Laxmi Parida and
Eleazar Eskin},
editor = {Minghua Deng and
Rui Jiang and
Fengzhu Sun and
Xuegong Zhang},
title = {{IPED:} Inheritance Path Based Pedigree Reconstruction Algorithm Using
Genotype Data},
booktitle = {Research in Computational Molecular Biology - 17th Annual International
Conference, {RECOMB} 2013, Beijing, China, April 7-10, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7821},
pages = {75--87},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-37195-0\_7},
doi = {10.1007/978-3-642-37195-0\_7},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HeWHPE13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/JanssonSS13,
author = {Jesper Jansson and
Chuanqi Shen and
Wing{-}Kin Sung},
editor = {Minghua Deng and
Rui Jiang and
Fengzhu Sun and
Xuegong Zhang},
title = {An Optimal Algorithm for Building the Majority Rule Consensus Tree},
booktitle = {Research in Computational Molecular Biology - 17th Annual International
Conference, {RECOMB} 2013, Beijing, China, April 7-10, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7821},
pages = {88--99},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-37195-0\_8},
doi = {10.1007/978-3-642-37195-0\_8},
timestamp = {Tue, 17 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/JanssonSS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/JeongKP13,
author = {Kyowon Jeong and
Sangtae Kim and
Pavel A. Pevzner},
editor = {Minghua Deng and
Rui Jiang and
Fengzhu Sun and
Xuegong Zhang},
title = {UniNovo: {A} Universal Tool for de Novo Peptide Sequencing},
booktitle = {Research in Computational Molecular Biology - 17th Annual International
Conference, {RECOMB} 2013, Beijing, China, April 7-10, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7821},
pages = {100--117},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-37195-0\_9},
doi = {10.1007/978-3-642-37195-0\_9},
timestamp = {Fri, 20 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/JeongKP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KostemE13,
author = {Emrah Kostem and
Eleazar Eskin},
editor = {Minghua Deng and
Rui Jiang and
Fengzhu Sun and
Xuegong Zhang},
title = {Efficiently Identifying Significant Associations in Genome-Wide Association
Studies},
booktitle = {Research in Computational Molecular Biology - 17th Annual International
Conference, {RECOMB} 2013, Beijing, China, April 7-10, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7821},
pages = {118--131},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-37195-0\_10},
doi = {10.1007/978-3-642-37195-0\_10},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KostemE13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LiuHWTPP13,
author = {Xiaowen Liu and
Shawna Hengel and
Si Wu and
Nikola Tolic and
Ljiljana Pasa{-}Tolic and
Pavel A. Pevzner},
editor = {Minghua Deng and
Rui Jiang and
Fengzhu Sun and
Xuegong Zhang},
title = {Identification of Ultramodified Proteins Using Top-Down Spectra},
booktitle = {Research in Computational Molecular Biology - 17th Annual International
Conference, {RECOMB} 2013, Beijing, China, April 7-10, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7821},
pages = {132--144},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-37195-0\_11},
doi = {10.1007/978-3-642-37195-0\_11},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LiuHWTPP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MunteanuG13,
author = {Alina Munteanu and
Raluca Gord{\^{a}}n},
editor = {Minghua Deng and
Rui Jiang and
Fengzhu Sun and
Xuegong Zhang},
title = {Distinguishing between Genomic Regions Bound by Paralogous Transcription
Factors},
booktitle = {Research in Computational Molecular Biology - 17th Annual International
Conference, {RECOMB} 2013, Beijing, China, April 7-10, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7821},
pages = {145--157},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-37195-0\_12},
doi = {10.1007/978-3-642-37195-0\_12},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MunteanuG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/NurkBAGKLPPSSSMLCWTAP13,
author = {Sergey Nurk and
Anton Bankevich and
Dmitry Antipov and
Alexey A. Gurevich and
Anton I. Korobeynikov and
Alla L. Lapidus and
Andrey D. Prjibelsky and
Alex Pyshkin and
Alexander Sirotkin and
Yakov Sirotkin and
Ramunas Stepanauskas and
Jeffrey S. McLean and
Roger Lasken and
Scott R. Clingenpeel and
Tanja Woyke and
Glenn Tesler and
Max A. Alekseyev and
Pavel A. Pevzner},
editor = {Minghua Deng and
Rui Jiang and
Fengzhu Sun and
Xuegong Zhang},
title = {Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads},
booktitle = {Research in Computational Molecular Biology - 17th Annual International
Conference, {RECOMB} 2013, Beijing, China, April 7-10, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7821},
pages = {158--170},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-37195-0\_13},
doi = {10.1007/978-3-642-37195-0\_13},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/NurkBAGKLPPSSSMLCWTAP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/OesperMR13,
author = {Layla Oesper and
Ahmad Mahmoody and
Benjamin J. Raphael},
editor = {Minghua Deng and
Rui Jiang and
Fengzhu Sun and
Xuegong Zhang},
title = {Inferring Intra-tumor Heterogeneity from High-Throughput {DNA} Sequencing
Data},
booktitle = {Research in Computational Molecular Biology - 17th Annual International
Conference, {RECOMB} 2013, Beijing, China, April 7-10, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7821},
pages = {171--172},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-37195-0\_14},
doi = {10.1007/978-3-642-37195-0\_14},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/OesperMR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PuniyaniX13,
author = {Kriti Puniyani and
Eric P. Xing},
editor = {Minghua Deng and
Rui Jiang and
Fengzhu Sun and
Xuegong Zhang},
title = {NP-MuScL: Unsupervised Global Prediction of Interaction Networks from
Multiple Data Sources},
booktitle = {Research in Computational Molecular Biology - 17th Annual International
Conference, {RECOMB} 2013, Beijing, China, April 7-10, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7821},
pages = {173--185},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-37195-0\_15},
doi = {10.1007/978-3-642-37195-0\_15},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PuniyaniX13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ReederG13,
author = {Christopher Reeder and
David Gifford},
editor = {Minghua Deng and
Rui Jiang and
Fengzhu Sun and
Xuegong Zhang},
title = {High Resolution Modeling of Chromatin Interactions},
booktitle = {Research in Computational Molecular Biology - 17th Annual International
Conference, {RECOMB} 2013, Beijing, China, April 7-10, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7821},
pages = {186--198},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-37195-0\_16},
doi = {10.1007/978-3-642-37195-0\_16},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ReederG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ReinharzPW13,
author = {Vladimir Reinharz and
Yann Ponty and
J{\'{e}}r{\^{o}}me Waldisp{\"{u}}hl},
editor = {Minghua Deng and
Rui Jiang and
Fengzhu Sun and
Xuegong Zhang},
title = {A Linear Inside-Outside Algorithm for Correcting Sequencing Errors
in Structured RNAs},
booktitle = {Research in Computational Molecular Biology - 17th Annual International
Conference, {RECOMB} 2013, Beijing, China, April 7-10, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7821},
pages = {199--211},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-37195-0\_17},
doi = {10.1007/978-3-642-37195-0\_17},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ReinharzPW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/RodriguezBB13,
author = {Jesse M. Rodriguez and
Serafim Batzoglou and
Sivan Bercovici},
editor = {Minghua Deng and
Rui Jiang and
Fengzhu Sun and
Xuegong Zhang},
title = {An Accurate Method for Inferring Relatedness in Large Datasets of
Unphased Genotypes via an Embedded Likelihood-Ratio Test},
booktitle = {Research in Computational Molecular Biology - 17th Annual International
Conference, {RECOMB} 2013, Beijing, China, April 7-10, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7821},
pages = {212--229},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-37195-0\_18},
doi = {10.1007/978-3-642-37195-0\_18},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/RodriguezBB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/RonenUHB13,
author = {Roy Ronen and
Nitin Udpa and
Eran Halperin and
Vineet Bafna},
editor = {Minghua Deng and
Rui Jiang and
Fengzhu Sun and
Xuegong Zhang},
title = {Learning Natural Selection from the Site Frequency Spectrum},
booktitle = {Research in Computational Molecular Biology - 17th Annual International
Conference, {RECOMB} 2013, Beijing, China, April 7-10, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7821},
pages = {230--233},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-37195-0\_19},
doi = {10.1007/978-3-642-37195-0\_19},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/RonenUHB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SadehMS13,
author = {Mohammad Javad Sadeh and
Giusi Moffa and
Rainer Spang},
editor = {Minghua Deng and
Rui Jiang and
Fengzhu Sun and
Xuegong Zhang},
title = {Considering Unknown Unknowns - Reconstruction of Non-confoundable
Causal Relations in Biological Networks},
booktitle = {Research in Computational Molecular Biology - 17th Annual International
Conference, {RECOMB} 2013, Beijing, China, April 7-10, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7821},
pages = {234--248},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-37195-0\_20},
doi = {10.1007/978-3-642-37195-0\_20},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SadehMS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SalariSHKNWSB13,
author = {Raheleh Salari and
Syed Shayon Saleh and
Dorna Kashef Haghighi and
David Khavari and
Daniel E. Newburger and
Robert B. West and
Arend Sidow and
Serafim Batzoglou},
editor = {Minghua Deng and
Rui Jiang and
Fengzhu Sun and
Xuegong Zhang},
title = {Inference of Tumor Phylogenies with Improved Somatic Mutation Discovery},
booktitle = {Research in Computational Molecular Biology - 17th Annual International
Conference, {RECOMB} 2013, Beijing, China, April 7-10, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7821},
pages = {249--263},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-37195-0\_21},
doi = {10.1007/978-3-642-37195-0\_21},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SalariSHKNWSB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SenterSDPC13,
author = {Evan Senter and
Saad Sheikh and
Iv{\'{a}}n Dot{\'{u}} and
Yann Ponty and
Peter Clote},
editor = {Minghua Deng and
Rui Jiang and
Fengzhu Sun and
Xuegong Zhang},
title = {Abstract: Using the Fast Fourier Transform to Accelerate the Computational
Search for {RNA} Conformational Switches},
booktitle = {Research in Computational Molecular Biology - 17th Annual International
Conference, {RECOMB} 2013, Beijing, China, April 7-10, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7821},
pages = {264--265},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-37195-0\_22},
doi = {10.1007/978-3-642-37195-0\_22},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SenterSDPC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/StevensCXCW13,
author = {Michael Stevens and
Jeffrey B. Cheng and
Mingchao Xie and
Joseph F. Costello and
Ting Wang},
editor = {Minghua Deng and
Rui Jiang and
Fengzhu Sun and
Xuegong Zhang},
title = {MethylCRF, an Algorithm for Estimating Absolute Methylation Levels
at Single CpG Resolution from Methylation Enrichment and Restriction
Enzyme Sequencing Methods},
booktitle = {Research in Computational Molecular Biology - 17th Annual International
Conference, {RECOMB} 2013, Beijing, China, April 7-10, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7821},
pages = {266--268},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-37195-0\_23},
doi = {10.1007/978-3-642-37195-0\_23},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/StevensCXCW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/TranCZ13,
author = {Ngoc Hieu Tran and
Kwok Pui Choi and
Louxin Zhang},
editor = {Minghua Deng and
Rui Jiang and
Fengzhu Sun and
Xuegong Zhang},
title = {Counting Motifs in the Entire Biological Network from Noisy and Incomplete
Data - (Extended Abstract)},
booktitle = {Research in Computational Molecular Biology - 17th Annual International
Conference, {RECOMB} 2013, Beijing, China, April 7-10, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7821},
pages = {269--270},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-37195-0\_24},
doi = {10.1007/978-3-642-37195-0\_24},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/TranCZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/TripathyYZD13,
author = {Chittaranjan Tripathy and
Anthony K. Yan and
Pei Zhou and
Bruce Randall Donald},
editor = {Minghua Deng and
Rui Jiang and
Fengzhu Sun and
Xuegong Zhang},
title = {Extracting Structural Information from Residual Chemical Shift Anisotropy:
Analytic Solutions for Peptide Plane Orientations and Applications
to Determine Protein Structure},
booktitle = {Research in Computational Molecular Biology - 17th Annual International
Conference, {RECOMB} 2013, Beijing, China, April 7-10, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7821},
pages = {271--284},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-37195-0\_25},
doi = {10.1007/978-3-642-37195-0\_25},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/TripathyYZD13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/VandinPRU13,
author = {Fabio Vandin and
Alexandra Papoutsaki and
Benjamin J. Raphael and
Eli Upfal},
editor = {Minghua Deng and
Rui Jiang and
Fengzhu Sun and
Xuegong Zhang},
title = {Genome-Wide Survival Analysis of Somatic Mutations in Cancer},
booktitle = {Research in Computational Molecular Biology - 17th Annual International
Conference, {RECOMB} 2013, Beijing, China, April 7-10, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7821},
pages = {285--286},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-37195-0\_26},
doi = {10.1007/978-3-642-37195-0\_26},
timestamp = {Mon, 16 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/VandinPRU13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WangB13,
author = {Mingxun Wang and
Nuno Bandeira},
editor = {Minghua Deng and
Rui Jiang and
Fengzhu Sun and
Xuegong Zhang},
title = {Spectral Library Generating Function for Assessing Spectrum-Spectrum
Match Significance},
booktitle = {Research in Computational Molecular Biology - 17th Annual International
Conference, {RECOMB} 2013, Beijing, China, April 7-10, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7821},
pages = {287--288},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-37195-0\_27},
doi = {10.1007/978-3-642-37195-0\_27},
timestamp = {Sat, 17 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/WangB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WillSMMB13,
author = {Sebastian Will and
Christina Schmiedl and
Milad Miladi and
Mathias M{\"{o}}hl and
Rolf Backofen},
editor = {Minghua Deng and
Rui Jiang and
Fengzhu Sun and
Xuegong Zhang},
title = {{SPARSE:} Quadratic Time Simultaneous Alignment and Folding of RNAs
without Sequence-Based Heuristics},
booktitle = {Research in Computational Molecular Biology - 17th Annual International
Conference, {RECOMB} 2013, Beijing, China, April 7-10, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7821},
pages = {289--290},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-37195-0\_28},
doi = {10.1007/978-3-642-37195-0\_28},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WillSMMB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Wu13,
author = {Yufeng Wu},
editor = {Minghua Deng and
Rui Jiang and
Fengzhu Sun and
Xuegong Zhang},
title = {An Algorithm for Constructing Parsimonious Hybridization Networks
with Multiple Phylogenetic Trees},
booktitle = {Research in Computational Molecular Biology - 17th Annual International
Conference, {RECOMB} 2013, Beijing, China, April 7-10, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7821},
pages = {291--303},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-37195-0\_29},
doi = {10.1007/978-3-642-37195-0\_29},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Wu13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/XuLZ13,
author = {Dong Xu and
Hua Li and
Yang Zhang},
editor = {Minghua Deng and
Rui Jiang and
Fengzhu Sun and
Xuegong Zhang},
title = {Fast and Accurate Calculation of Protein Depth by Euclidean Distance
Transform},
booktitle = {Research in Computational Molecular Biology - 17th Annual International
Conference, {RECOMB} 2013, Beijing, China, April 7-10, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7821},
pages = {304--316},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-37195-0\_30},
doi = {10.1007/978-3-642-37195-0\_30},
timestamp = {Wed, 30 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/XuLZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhangLTS13,
author = {ZhiZhuo Zhang and
Guoliang Li and
Kim{-}Chuan Toh and
Wing{-}Kin Sung},
editor = {Minghua Deng and
Rui Jiang and
Fengzhu Sun and
Xuegong Zhang},
title = {Inference of Spatial Organizations of Chromosomes Using Semi-definite
Embedding Approach and Hi-C Data},
booktitle = {Research in Computational Molecular Biology - 17th Annual International
Conference, {RECOMB} 2013, Beijing, China, April 7-10, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7821},
pages = {317--332},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-37195-0\_31},
doi = {10.1007/978-3-642-37195-0\_31},
timestamp = {Fri, 27 Dec 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/ZhangLTS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/recomb/2013,
editor = {Minghua Deng and
Rui Jiang and
Fengzhu Sun and
Xuegong Zhang},
title = {Research in Computational Molecular Biology - 17th Annual International
Conference, {RECOMB} 2013, Beijing, China, April 7-10, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7821},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-37195-0},
doi = {10.1007/978-3-642-37195-0},
isbn = {978-3-642-37194-3},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/2013.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/AlipanahiKGWDL12,
author = {Babak Alipanahi and
Nathan Krislock and
Ali Ghodsi and
Henry Wolkowicz and
Logan Donaldson and
Ming Li},
editor = {Benny Chor},
title = {Protein Structure by Semidefinite Facial Reduction},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {1--11},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_1},
doi = {10.1007/978-3-642-29627-7\_1},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/AlipanahiKGWDL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BercoviciREB12,
author = {Sivan Bercovici and
Jesse M. Rodriguez and
Megan Elmore and
Serafim Batzoglou},
editor = {Benny Chor},
title = {Ancestry Inference in Complex Admixtures via Variable-Length Markov
Chain Linkage Models},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {12--28},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_2},
doi = {10.1007/978-3-642-29627-7\_2},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BercoviciREB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Bravo12,
author = {H{\'{e}}ctor Corrada Bravo},
editor = {Benny Chor},
title = {Increased Methylation Variation in Epigenetic Domains across Cancer
Types},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {44},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_4},
doi = {10.1007/978-3-642-29627-7\_4},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Bravo12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/CanzarEPEMMGSK12,
author = {Stefan Canzar and
Mohammed El{-}Kebir and
Ren{\'{e}} Pool and
Khaled M. Elbassioni and
Alpeshkumar K. Malde and
Alan E. Mark and
Daan P. Geerke and
Leen Stougie and
Gunnar W. Klau},
editor = {Benny Chor},
title = {Charge Group Partitioning in Biomolecular Simulation},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {29--43},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_3},
doi = {10.1007/978-3-642-29627-7\_3},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/CanzarEPEMMGSK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DeBlasioWK12,
author = {Dan F. DeBlasio and
Travis J. Wheeler and
John D. Kececioglu},
editor = {Benny Chor},
title = {Estimating the Accuracy of Multiple Alignments and its Use in Parameter
Advising},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {45--59},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_5},
doi = {10.1007/978-3-642-29627-7\_5},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DeBlasioWK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/FrancisF12,
author = {Matthew R. Francis and
Elana J. Fertig},
editor = {Benny Chor},
title = {Quantifying the Dynamics of Coupled Networks of Switches and Oscillators},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {60--61},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_6},
doi = {10.1007/978-3-642-29627-7\_6},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/FrancisF12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GymrekGRE12,
author = {Melissa Gymrek and
David Golan and
Saharon Rosset and
Yaniv Erlich},
editor = {Benny Chor},
title = {lobSTR: {A} Short Tandem Repeat Profiler for Personal Genomes},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {62--63},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_7},
doi = {10.1007/978-3-642-29627-7\_7},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/GymrekGRE12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HeHE12,
author = {Dan He and
Buhm Han and
Eleazar Eskin},
editor = {Benny Chor},
title = {Hap-seq: An Optimal Algorithm for Haplotype Phasing with Imputation
Using Sequencing Data},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {64--78},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_8},
doi = {10.1007/978-3-642-29627-7\_8},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HeHE12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HeVPB12,
author = {Lu He and
Fabio Vandin and
Gopal Pandurangan and
Chris Bailey{-}Kellogg},
editor = {Benny Chor},
title = {Ballast: {A} Ball-Based Algorithm for Structural Motifs},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {79--93},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_9},
doi = {10.1007/978-3-642-29627-7\_9},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HeVPB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HollowaySAE12,
author = {Patrick Holloway and
Krister M. Swenson and
David H. Ardell and
Nadia El{-}Mabrouk},
editor = {Benny Chor},
title = {Evolution of Genome Organization by Duplication and Loss: An Alignment
Approach},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {94--112},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_10},
doi = {10.1007/978-3-642-29627-7\_10},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HollowaySAE12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HoltbyLL12,
author = {Daniel Holtby and
Shuai Cheng Li and
Ming Li},
editor = {Benny Chor},
title = {LoopWeaver - Loop Modeling by the Weighted Scaling of Verified Proteins},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {113--126},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_11},
doi = {10.1007/978-3-642-29627-7\_11},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/HoltbyLL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HuangHJMCLPL12,
author = {Yan Huang and
Yin Hu and
Corbin D. Jones and
James N. MacLeod and
Derek Y. Chiang and
Yufeng Liu and
Jan F. Prins and
Jinze Liu},
editor = {Benny Chor},
title = {A Robust Method for Transcript Quantification with RNA-seq Data},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {127--147},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_12},
doi = {10.1007/978-3-642-29627-7\_12},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HuangHJMCLPL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KinsellaB12,
author = {Marcus Kinsella and
Vineet Bafna},
editor = {Benny Chor},
title = {Modeling the Breakage-Fusion-Bridge Mechanism: Combinatorics and Cancer
Genomics},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {148--162},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_13},
doi = {10.1007/978-3-642-29627-7\_13},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KinsellaB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LiLBBRM12,
author = {Yang Li and
Hong{-}Mei Li and
Paul Burns and
Mark Borodovsky and
Gene E. Robinson and
Jian Ma},
editor = {Benny Chor},
title = {TrueSight: Self-training Algorithm for Splice Junction Detection Using
RNA-seq},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {163--164},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_14},
doi = {10.1007/978-3-642-29627-7\_14},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LiLBBRM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LinWS12,
author = {Yaw{-}Ling Lin and
Charles B. Ward and
Steven Skiena},
editor = {Benny Chor},
title = {Synthetic Sequence Design for Signal Location Search},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {165--179},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_15},
doi = {10.1007/978-3-642-29627-7\_15},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LinWS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Marti-Renom12,
author = {Marc A. Mart{\'{\i}}{-}Renom},
editor = {Benny Chor},
title = {The Three-Dimensional Architecture of a Bacterial Genome and Its Alteration
by Genetic Perturbation},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {180},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_16},
doi = {10.1007/978-3-642-29627-7\_16},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Marti-Renom12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/McPhersonWWSCS12,
author = {Andrew W. McPherson and
Chunxiao Wu and
Alexander Wyatt and
Sohrab P. Shah and
Colin C. Collins and
S{\"{u}}leyman Cenk Sahinalp},
editor = {Benny Chor},
title = {Discovery of Complex Genomic Rearrangements in Cancer Using High-Throughput
Sequencing},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {181--182},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_17},
doi = {10.1007/978-3-642-29627-7\_17},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/McPhersonWWSCS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MuraliDBTK12,
author = {T. M. Murali and
Matthew D. Dyer and
David Badger and
Brett M. Tyler and
Michael G. Katze},
editor = {Benny Chor},
title = {Network-Based Prediction and Analysis of {HIV} Dependency Factors},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {183},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_18},
doi = {10.1007/978-3-642-29627-7\_18},
timestamp = {Thu, 18 Jul 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MuraliDBTK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ParkerGB12,
author = {Andrew S. Parker and
Karl E. Griswold and
Chris Bailey{-}Kellogg},
editor = {Benny Chor},
title = {Structure-Guided Deimmunization of Therapeutic Proteins},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {184--198},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_19},
doi = {10.1007/978-3-642-29627-7\_19},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ParkerGB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PervouchineKPNGRM12,
author = {Dmitri D. Pervouchine and
Ekaterina Khrameeva and
Marina Pichugina and
Olexii Nikolaienko and
Mikhail S. Gelfand and
Petr Rubtsov and
Andrey A. Mironov},
editor = {Benny Chor},
title = {Evidence for Widespread Association of Mammalian Splicing and Conserved
Long-Range {RNA} Structures},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {199},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_20},
doi = {10.1007/978-3-642-29627-7\_20},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PervouchineKPNGRM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PhamASTPA12,
author = {Son K. Pham and
Dmitry Antipov and
Alexander Sirotkin and
Glenn Tesler and
Pavel A. Pevzner and
Max A. Alekseyev},
editor = {Benny Chor},
title = {Pathset Graphs: {A} Novel Approach for Comprehensive Utilization of
Paired Reads in Genome Assembly},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {200--212},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_21},
doi = {10.1007/978-3-642-29627-7\_21},
timestamp = {Mon, 25 Nov 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/PhamASTPA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/RaufRNB12,
author = {Imran Rauf and
Florian Rasche and
Fran{\c{c}}ois Nicolas and
Sebastian B{\"{o}}cker},
editor = {Benny Chor},
title = {Finding Maximum Colorful Subtrees in Practice},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {213--223},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_22},
doi = {10.1007/978-3-642-29627-7\_22},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/RaufRNB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/RochS12,
author = {Sebastien Roch and
Sagi Snir},
editor = {Benny Chor},
title = {Recovering the Tree-Like Trend of Evolution Despite Extensive Lateral
Genetic Transfer: {A} Probabilistic Analysis},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {224--238},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_23},
doi = {10.1007/978-3-642-29627-7\_23},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/RochS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SahraeianY12,
author = {Sayed Mohammad Ebrahim Sahraeian and
Byung{-}Jun Yoon},
editor = {Benny Chor},
title = {{RESQUE:} Network Reduction Using Semi-Markov Random Walk Scores for
Efficient Querying of Biological Networks (Extended Abstract)},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {239--240},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_24},
doi = {10.1007/978-3-642-29627-7\_24},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SahraeianY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SalariKGP12,
author = {Raheleh Salari and
Chava Kimchi{-}Sarfaty and
Michael M. Gottesman and
Teresa M. Przytycka},
editor = {Benny Chor},
title = {Detecting SNP-Induced Structural Changes in {RNA:} Application to
Disease Studies},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {241--243},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_25},
doi = {10.1007/978-3-642-29627-7\_25},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SalariKGP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SankoffZW12,
author = {David Sankoff and
Chunfang Zheng and
Baoyong Wang},
editor = {Benny Chor},
title = {A Model for Biased Fractionation after Whole Genome Duplication},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {244},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_26},
doi = {10.1007/978-3-642-29627-7\_26},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SankoffZW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SchmiedlMHALWB12,
author = {Christina Schmiedl and
Mathias M{\"{o}}hl and
Steffen Heyne and
Mika Amit and
Gad M. Landau and
Sebastian Will and
Rolf Backofen},
editor = {Benny Chor},
title = {Exact Pattern Matching for {RNA} Structure Ensembles},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {245--260},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_27},
doi = {10.1007/978-3-642-29627-7\_27},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SchmiedlMHALWB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SharanK12,
author = {Roded Sharan and
Richard M. Karp},
editor = {Benny Chor},
title = {Reconstructing Boolean Models of Signaling},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {261--271},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_28},
doi = {10.1007/978-3-642-29627-7\_28},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SharanK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SongRZLDS12,
author = {Kai Song and
Jie Ren and
Zhiyuan Zhai and
Xuemei Liu and
Minghua Deng and
Fengzhu Sun},
editor = {Benny Chor},
title = {Alignment-Free Sequence Comparison Based on Next Generation Sequencing
Reads: Extended Abstract},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {272--285},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_29},
doi = {10.1007/978-3-642-29627-7\_29},
timestamp = {Thu, 09 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SongRZLDS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Stark12,
author = {Rory Stark},
editor = {Benny Chor},
title = {Differential Oestrogen Receptor Binding is Associated with Clinical
Outcome in Breast Cancer},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {286},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_30},
doi = {10.1007/978-3-642-29627-7\_30},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Stark12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/TuncbagBPHCBZF12,
author = {Nurcan Tuncbag and
Alfredo Braunstein and
Andrea Pagnani and
Shao{-}Shan Carol Huang and
Jennifer T. Chayes and
Christian Borgs and
Riccardo Zecchina and
Ernest Fraenkel},
editor = {Benny Chor},
title = {Simultaneous Reconstruction of Multiple Signaling Pathways via the
Prize-Collecting Steiner Forest Problem},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {287--301},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_31},
doi = {10.1007/978-3-642-29627-7\_31},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/TuncbagBPHCBZF12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WangHD12,
author = {Hua Wang and
Heng Huang and
Chris H. Q. Ding},
editor = {Benny Chor},
title = {Function-Function Correlated Multi-Label Protein Function Prediction
over Interaction Networks},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {302--313},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_32},
doi = {10.1007/978-3-642-29627-7\_32},
timestamp = {Mon, 24 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WangHD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WangHDN12,
author = {Hua Wang and
Heng Huang and
Chris H. Q. Ding and
Feiping Nie},
editor = {Benny Chor},
title = {Predicting Protein-Protein Interactions from Multimodal Biological
Data Sources via Nonnegative Matrix Tri-Factorization},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {314--325},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_33},
doi = {10.1007/978-3-642-29627-7\_33},
timestamp = {Wed, 10 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WangHDN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WangHYHE12,
author = {Zhanyong Wang and
Farhad Hormozdiari and
Wen{-}Yun Yang and
Eran Halperin and
Eleazar Eskin},
editor = {Benny Chor},
title = {CNVeM: Copy Number Variation Detection Using Uncertainty of Read Mapping},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {326--340},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_34},
doi = {10.1007/978-3-642-29627-7\_34},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WangHYHE12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WillYB12,
author = {Sebastian Will and
Michael Yu and
Bonnie Berger},
editor = {Benny Chor},
title = {Structure-Based Whole Genome Realignment Reveals Many Novel Non-coding
RNAs},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {341},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_35},
doi = {10.1007/978-3-642-29627-7\_35},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WillYB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZagordiTPRHB12,
author = {Osvaldo Zagordi and
Armin T{\"{o}}pfer and
Sandhya Prabhakaran and
Volker Roth and
Eran Halperin and
Niko Beerenwinkel},
editor = {Benny Chor},
title = {Probabilistic Inference of Viral Quasispecies Subject to Recombination},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {342--354},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_36},
doi = {10.1007/978-3-642-29627-7\_36},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZagordiTPRHB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhangCWCS12,
author = {ZhiZhuo Zhang and
Cheng Wei Chang and
Hugo Willy and
Edwin Cheung and
Wing{-}Kin Sung},
editor = {Benny Chor},
title = {Simultaneously Learning {DNA} Motif along with Its Position and Sequence
Rank Preferences through {EM} Algorithm},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {355--370},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_37},
doi = {10.1007/978-3-642-29627-7\_37},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZhangCWCS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/recomb/2012,
editor = {Benny Chor},
title = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7},
doi = {10.1007/978-3-642-29627-7},
isbn = {978-3-642-29626-0},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/2012.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/AmirZ11,
author = {Amnon Amir and
Or Zuk},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Bacterial Community Reconstruction Using Compressed Sensing},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {1--15},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_1},
doi = {10.1007/978-3-642-20036-6\_1},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/AmirZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BhatiaKUCTCLYB11,
author = {Swapnil Bhatia and
Yong J. Kil and
Beatrix Ueberheide and
Brian T. Chait and
Lemmuel Lara Tayo and
Lourdes J. Cruz and
Bingwen Lu and
John R. Yates III and
Marshall W. Bern},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Constrained De Novo Sequencing of Peptides with Application to Conotoxins},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {16--30},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_2},
doi = {10.1007/978-3-642-20036-6\_2},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BhatiaKUCTCLYB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChindelevitchRB11,
author = {Leonid Chindelevitch and
Aviv Regev and
Bonnie Berger},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Metabolic Network Analysis Demystified},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {31--33},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_3},
doi = {10.1007/978-3-642-20036-6\_3},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/ChindelevitchRB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChindelevitchZERSBH11,
author = {Leonid Chindelevitch and
Daniel Ziemek and
Ahmed Enayetallah and
Ranjit Randhawa and
Ben Sidders and
Christoph Brockel and
Enoch S. Huang},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Causal Reasoning on Biological Networks: Interpreting Transcriptional
Changes - (Extended Abstract)},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {34--37},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_4},
doi = {10.1007/978-3-642-20036-6\_4},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/ChindelevitchZERSBH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DonmezB11,
author = {Nilgun Donmez and
Michael Brudno},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Hapsembler: An Assembler for Highly Polymorphic Genomes},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {38--52},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_5},
doi = {10.1007/978-3-642-20036-6\_5},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DonmezB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ErnstK11,
author = {Jason Ernst and
Manolis Kellis},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Discovery and Characterization of Chromatin States for Systematic
Annotation of the Human Genome},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {53},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_6},
doi = {10.1007/978-3-642-20036-6\_6},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ErnstK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ErtenBK11,
author = {Sinan Erten and
G{\"{u}}rkan Bebek and
Mehmet Koyut{\"{u}}rk},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Disease Gene Prioritization Based on Topological Similarity in Protein-Protein
Interaction Networks},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {54--68},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_7},
doi = {10.1007/978-3-642-20036-6\_7},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ErtenBK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GaoNS11,
author = {Song Gao and
Niranjan Nagarajan and
Wing{-}Kin Sung},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Opera: Reconstructing Optimal Genomic Scaffolds with High-Throughput
Paired-End Sequences},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {437--451},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_40},
doi = {10.1007/978-3-642-20036-6\_40},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/GaoNS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Gat-ViksMKS11,
author = {Irit Gat{-}Viks and
Renana Meller and
Martin Kupiec and
Ron Shamir},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Understanding Gene Sequence Variation in the Context of Transcription
Regulation in Yeast},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {69},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_8},
doi = {10.1007/978-3-642-20036-6\_8},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Gat-ViksMKS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HeathBK11,
author = {Allison P. Heath and
George N. Bennett and
Lydia E. Kavraki},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Identifying Branched Metabolic Pathways by Merging Linear Metabolic
Pathways},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {70--84},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_9},
doi = {10.1007/978-3-642-20036-6\_9},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HeathBK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HickeyB11,
author = {Glenn Hickey and
Mathieu Blanchette},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {A Probabilistic Model for Sequence Alignment with Context-Sensitive
Indels},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {85--103},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_10},
doi = {10.1007/978-3-642-20036-6\_10},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HickeyB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HormozdiariHMES11,
author = {Fereydoun Hormozdiari and
Iman Hajirasouliha and
Andrew W. McPherson and
Evan E. Eichler and
S{\"{u}}leyman Cenk Sahinalp},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Simultaneous Structural Variation Discovery in Multiple Paired-End
Sequenced Genomes},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {104--105},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_11},
doi = {10.1007/978-3-642-20036-6\_11},
timestamp = {Thu, 10 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HormozdiariHMES11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HuangJ11,
author = {Jim C. Huang and
Nebojsa Jojic},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Variable Selection through Correlation Sifting},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {106--123},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_12},
doi = {10.1007/978-3-642-20036-6\_12},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HuangJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/JiangA11,
author = {Shuai Jiang and
Max A. Alekseyev},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Weighted Genomic Distance Can Hardly Impose a Bound on the Proportion
of Transpositions},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {124--133},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_13},
doi = {10.1007/978-3-642-20036-6\_13},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/JiangA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KimM11,
author = {Jaebum Kim and
Jian Ma},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {{PSAR:} Measuring Multiple Sequence Alignment Reliability by Probabilistic
Sampling - (Extended Abstract)},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {134--135},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_14},
doi = {10.1007/978-3-642-20036-6\_14},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KimM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KirkpatrickLKH11,
author = {Bonnie Kirkpatrick and
Shuai Cheng Li and
Richard M. Karp and
Eran Halperin},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Pedigree Reconstruction Using Identity by Descent},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {136--152},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_15},
doi = {10.1007/978-3-642-20036-6\_15},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/KirkpatrickLKH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KuttyKrishnanSLJB11,
author = {Sooraj KuttyKrishnan and
Jeffrey Sabina and
Laura Langton and
Mark Johnston and
Michael R. Brent},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {A Quantitative Model of Glucose Signaling in Yeast Reveals an Incoherent
Feed Forward Loop Leading to a Specific, Transient Pulse of Transcription},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {153},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_16},
doi = {10.1007/978-3-642-20036-6\_16},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KuttyKrishnanSLJB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LeisersonTCH11,
author = {Mark D. M. Leiserson and
Diana Tatar and
Lenore J. Cowen and
Benjamin J. Hescott},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Inferring Mechanisms of Compensation from {E-MAP} and {SGA} Data Using
Local Search Algorithms for Max Cut},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {154--167},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_17},
doi = {10.1007/978-3-642-20036-6\_17},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LeisersonTCH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LiFJ11,
author = {Wei Li and
Jianxing Feng and
Tao Jiang},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {IsoLasso: {A} {LASSO} Regression Approach to RNA-Seq Based Transcriptome
Assembly - (Extended Abstract)},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {168--188},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_18},
doi = {10.1007/978-3-642-20036-6\_18},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LiFJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LiL11,
author = {Xin Li and
Jing Li},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Haplotype Reconstruction in Large Pedigrees with Many Untyped Individuals},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {189--203},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_19},
doi = {10.1007/978-3-642-20036-6\_19},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LiL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LinBM11,
author = {Tien{-}ho Lin and
Ziv Bar{-}Joseph and
Robert F. Murphy},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Learning Cellular Sorting Pathways Using Protein Interactions and
Sequence Motifs},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {204--221},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_20},
doi = {10.1007/978-3-642-20036-6\_20},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LinBM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MartinYBZD11,
author = {Jeffrey W. Martin and
Anthony K. Yan and
Chris Bailey{-}Kellogg and
Pei Zhou and
Bruce Randall Donald},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {A Geometric Arrangement Algorithm for Structure Determination of Symmetric
Protein Homo-oligomers from NOEs and RDCs},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {222--237},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_21},
doi = {10.1007/978-3-642-20036-6\_21},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MartinYBZD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MedvedevPCTP11,
author = {Paul Medvedev and
Son K. Pham and
Mark Chaisson and
Glenn Tesler and
Pavel A. Pevzner},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Paired de Bruijn Graphs: {A} Novel Approach for Incorporating Mate
Pair Information into Genome Assemblers},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {238--251},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_22},
doi = {10.1007/978-3-642-20036-6\_22},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MedvedevPCTP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MisraBRS11,
author = {Navodit Misra and
Guy E. Blelloch and
R. Ravi and
Russell Schwartz},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {An Optimization-Based Sampling Scheme for Phylogenetic Trees},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {252--266},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_23},
doi = {10.1007/978-3-642-20036-6\_23},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MisraBRS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MohimaniLYGFDP11,
author = {Hosein Mohimani and
Wei{-}Ting Liu and
Yu{-}Liang Yang and
Susana P. Gaud{\^{e}}ncio and
William Fenical and
Pieter C. Dorrestein and
Pavel A. Pevzner},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Multiplex De Novo Sequencing of Peptide Antibiotics},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {267--281},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_24},
doi = {10.1007/978-3-642-20036-6\_24},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MohimaniLYGFDP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Nadeau11,
author = {Joe Nadeau},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Fractal and Transgenerational Genetic Effects on Phenotypic Variation
and Disease Risk},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {282},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_25},
doi = {10.1007/978-3-642-20036-6\_25},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Nadeau11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/NewkirkBCYX11,
author = {Daniel Newkirk and
Jacob Biesinger and
Alvin Chon and
Kyoko Yokomori and
Xiaohui Xie},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {{AREM:} Aligning Short Reads from ChIP-Sequencing by Expectation Maximization},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {283--297},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_26},
doi = {10.1007/978-3-642-20036-6\_26},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/NewkirkBCYX11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/NgAP11,
author = {Julio Ng and
Amihood Amir and
Pavel A. Pevzner},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Blocked Pattern Matching Problem and Its Applications in Proteomics},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {298--319},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_27},
doi = {10.1007/978-3-642-20036-6\_27},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/NgAP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/NobleDASMKLSFB11,
author = {William Stafford Noble and
Zhi{-}jun Duan and
Mirela Andronescu and
Kevin Schutz and
Sean McIlwain and
Yoo Jung Kim and
Choli Lee and
Jay Shendure and
Stanley Fields and
C. Anthony Blau},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {A Three-Dimensional Model of the Yeast Genome},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {320},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_28},
doi = {10.1007/978-3-642-20036-6\_28},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/NobleDASMKLSFB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ParkerGB11,
author = {Andrew S. Parker and
Karl E. Griswold and
Chris Bailey{-}Kellogg},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Optimization of Combinatorial Mutagenesis},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {321--335},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_29},
doi = {10.1007/978-3-642-20036-6\_29},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ParkerGB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PengL11,
author = {Hanchuan Peng and
Fuhui Long},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Seeing More Is Knowing More: {V3D} Enables Real-Time 3D Visualization
and Quantitative Analysis of Large-Scale Biological Image Data Sets},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {336},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_30},
doi = {10.1007/978-3-642-20036-6\_30},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PengL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PengLYC11,
author = {Yu Peng and
Henry C. M. Leung and
Siu{-}Ming Yiu and
Francis Y. L. Chin},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {{T-IDBA:} {A} de novo Iterative de Bruijn Graph Assembler for Transcriptome
- (Extended Abstract)},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {337--338},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_31},
doi = {10.1007/978-3-642-20036-6\_31},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PengLYC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PetriKZ11,
author = {Tobias Petri and
Robert K{\"{u}}ffner and
Ralf Zimmer},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Experiment Specific Expression Patterns},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {339--354},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_32},
doi = {10.1007/978-3-642-20036-6\_32},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PetriKZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PratFLL11,
author = {Yosef Prat and
Menachem Fromer and
Michal Linial and
Nathan Linial},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Geometric Interpretation of Gene Expression by Sparse Reconstruction
of Transcript Profiles},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {355--357},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_33},
doi = {10.1007/978-3-642-20036-6\_33},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PratFLL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ReuveniMKRT11,
author = {Shlomi Reuveni and
Isaac Meilijson and
Martin Kupiec and
Eytan Ruppin and
Tamir Tuller},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {A Ribosome Flow Model for Analyzing Translation Elongation - (Extended
Abstract)},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {358--360},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_34},
doi = {10.1007/978-3-642-20036-6\_34},
timestamp = {Sat, 21 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ReuveniMKRT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/RobertsCBMD11,
author = {Kyle E. Roberts and
Patrick R. Cushing and
Prisca Boisguerin and
Dean R. Madden and
Bruce Randall Donald},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Design of Protein-Protein Interactions with a Novel Ensemble-Based
Scoring Algorithm},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {361--376},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_35},
doi = {10.1007/978-3-642-20036-6\_35},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/RobertsCBMD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ScheubertHRB11,
author = {Kerstin Scheubert and
Franziska Hufsky and
Florian Rasche and
Sebastian B{\"{o}}cker},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Computing Fragmentation Trees from Metabolite Multiple Mass Spectrometry
Data},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {377--391},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_36},
doi = {10.1007/978-3-642-20036-6\_36},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ScheubertHRB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SeferK11,
author = {Emre Sefer and
Carl Kingsford},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Metric Labeling and Semi-metric Embedding for Protein Annotation Prediction},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {392--407},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_37},
doi = {10.1007/978-3-642-20036-6\_37},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SeferK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ShenkerODBW11,
author = {Solomon Shenker and
Charles W. O'Donnell and
Srinivas Devadas and
Bonnie Berger and
J{\'{e}}r{\^{o}}me Waldisp{\"{u}}hl},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Efficient Traversal of Beta-Sheet Protein Folding Pathways Using Ensemble
Models},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {408--423},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_38},
doi = {10.1007/978-3-642-20036-6\_38},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ShenkerODBW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SilverbushES11,
author = {Dana Silverbush and
Michael Elberfeld and
Roded Sharan},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Optimally Orienting Physical Networks},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {424--436},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_39},
doi = {10.1007/978-3-642-20036-6\_39},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SilverbushES11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SulHE11,
author = {Jae Hoon Sul and
Buhm Han and
Eleazar Eskin},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Increasing Power of Groupwise Association Test with Likelihood Ratio
Test},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {452--467},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_41},
doi = {10.1007/978-3-642-20036-6\_41},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SulHE11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/TarpineLI11,
author = {Ryan Tarpine and
Fumei Lam and
Sorin Istrail},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Conservative Extensions of Linkage Disequilibrium Measures from Pairwise
to Multi-loci and Algorithms for Optimal Tagging {SNP} Selection},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {468--482},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_42},
doi = {10.1007/978-3-642-20036-6\_42},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/TarpineLI11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/TripathyZZD11,
author = {Chittaranjan Tripathy and
Jianyang Zeng and
Pei Zhou and
Bruce Randall Donald},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Protein Loop Closure Using Orientational Restraints from {NMR} Data},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {483--498},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_43},
doi = {10.1007/978-3-642-20036-6\_43},
timestamp = {Wed, 02 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/TripathyZZD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/VandinUR11,
author = {Fabio Vandin and
Eli Upfal and
Benjamin J. Raphael},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {\emph{De Novo} Discovery of Mutated Driver Pathways in Cancer},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {499--500},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_44},
doi = {10.1007/978-3-642-20036-6\_44},
timestamp = {Mon, 16 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/VandinUR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WaldispuhlP11,
author = {J{\'{e}}r{\^{o}}me Waldisp{\"{u}}hl and
Yann Ponty},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {An Unbiased Adaptive Sampling Algorithm for the Exploration of {RNA}
Mutational Landscapes under Evolutionary Pressure},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {501--515},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_45},
doi = {10.1007/978-3-642-20036-6\_45},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WaldispuhlP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WauthierJJ11,
author = {Fabian L. Wauthier and
Michael I. Jordan and
Nebojsa Jojic},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Nonparametric Combinatorial Sequence Models},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {516--530},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_46},
doi = {10.1007/978-3-642-20036-6\_46},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WauthierJJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/YuWN11,
author = {Yun Yu and
Tandy J. Warnow and
Luay Nakhleh},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Algorithms for MDC-Based Multi-locus Phylogeny Inference},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {531--545},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_47},
doi = {10.1007/978-3-642-20036-6\_47},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/YuWN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZakovGEZ11,
author = {Shay Zakov and
Yoav Goldberg and
Michael Elhadad and
Michal Ziv{-}Ukelson},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Rich Parameterization Improves {RNA} Structure Prediction},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {546--562},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_48},
doi = {10.1007/978-3-642-20036-6\_48},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZakovGEZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZengRZD11,
author = {Jianyang Zeng and
Kyle E. Roberts and
Pei Zhou and
Bruce Randall Donald},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {A Bayesian Approach for Determining Protein Side-Chain Rotamer Conformations
Using Unassigned {NOE} Data},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {563--578},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_49},
doi = {10.1007/978-3-642-20036-6\_49},
timestamp = {Wed, 02 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZengRZD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/recomb/2011,
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6},
doi = {10.1007/978-3-642-20036-6},
isbn = {978-3-642-20035-9},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/2011.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/AtiasS10,
author = {Nir Atias and
Roded Sharan},
editor = {Bonnie Berger},
title = {An Algorithmic Framework for Predicting Side-Effects of Drugs},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {1--14},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_1},
doi = {10.1007/978-3-642-12683-3\_1},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/AtiasS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/AyK10,
author = {Ferhat Ay and
Tamer Kahveci},
editor = {Bonnie Berger},
title = {SubMAP: Aligning Metabolic Pathways with Subnetwork Mappings},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {15--30},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_2},
doi = {10.1007/978-3-642-12683-3\_2},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/AyK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BenazetBTGMZNZ10,
author = {Jean{-}Denis Benazet and
Mirko Bischofberger and
Eva Tiecke and
Alexandre Gonalves and
James F. Martin and
Aime Zuniga and
Felix Naef and
Rolf Zeller},
editor = {Bonnie Berger},
title = {A Self-regulatory System of Interlinked Signaling Feedback Loops Controls
Mouse Limb Patterning},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {575--576},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_40},
doi = {10.1007/978-3-642-12683-3\_40},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BenazetBTGMZNZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BercoviciG10,
author = {Sivan Bercovici and
Dan Geiger},
editor = {Bonnie Berger},
title = {Admixture Aberration Analysis: Application to Mapping in Admixed Population
Using Pooled {DNA}},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {31--49},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_3},
doi = {10.1007/978-3-642-12683-3\_3},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BercoviciG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BercoviciSPS10,
author = {Sivan Bercovici and
Itai Sharon and
Ron Y. Pinter and
Tomer Shlomi},
editor = {Bonnie Berger},
title = {Pathway-Based Functional Analysis of Metagenomes},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {50--64},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_4},
doi = {10.1007/978-3-642-12683-3\_4},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BercoviciSPS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/CaldasK10,
author = {Jos{\'{e}} Caldas and
Samuel Kaski},
editor = {Bonnie Berger},
title = {Hierarchical Generative Biclustering for MicroRNA Expression Analysis},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {65--79},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_5},
doi = {10.1007/978-3-642-12683-3\_5},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/CaldasK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChorHGLM10,
author = {Benny Chor and
David Horn and
Nick Goldman and
Yaron Levy and
Tim Massingham},
editor = {Bonnie Berger},
title = {Genomic {DNA} \emph{k}-mer Spectra: Models and Modalities},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {571},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_37},
doi = {10.1007/978-3-642-12683-3\_37},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ChorHGLM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChowdhuryNCK10,
author = {Salim A. Chowdhury and
Rod K. Nibbe and
Mark R. Chance and
Mehmet Koyut{\"{u}}rk},
editor = {Bonnie Berger},
title = {Subnetwork State Functions Define Dysregulated Subnetworks in Cancer},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {80--95},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_6},
doi = {10.1007/978-3-642-12683-3\_6},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ChowdhuryNCK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ClaassenAB10,
author = {Manfred Claassen and
Ruedi Aebersold and
Joachim M. Buhmann},
editor = {Bonnie Berger},
title = {Proteome Coverage Prediction for Integrated Proteomics Datasets},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {96--109},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_7},
doi = {10.1007/978-3-642-12683-3\_7},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ClaassenAB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DanfordDAGFG10,
author = {Timothy Danford and
Robin D. Dowell and
Sudeep Agarwala and
Paula Grisafi and
Gerald Fink and
David K. Gifford},
editor = {Bonnie Berger},
title = {Discovering Regulatory Overlapping {RNA} Transcripts},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {110--122},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_8},
doi = {10.1007/978-3-642-12683-3\_8},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DanfordDAGFG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DaskalakisR10,
author = {Constantinos Daskalakis and
S{\'{e}}bastien Roch},
editor = {Bonnie Berger},
title = {Alignment-Free Phylogenetic Reconstruction},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {123--137},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_9},
doi = {10.1007/978-3-642-12683-3\_9},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DaskalakisR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/FengLJ10,
author = {Jianxing Feng and
Wei Li and
Tao Jiang},
editor = {Bonnie Berger},
title = {Inference of Isoforms from Short Sequence Reads},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {138--157},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_10},
doi = {10.1007/978-3-642-12683-3\_10},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/FengLJ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GoldsteinRTH10,
author = {Richard A. Goldstein and
Mario dos Reis and
Asif U. Tamuri and
Alan J. Hay},
editor = {Bonnie Berger},
title = {Deciphering the Swine-Flu Pandemics of 1918 and 2009},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {572--573},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_38},
doi = {10.1007/978-3-642-12683-3\_38},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/GoldsteinRTH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GordanHB10,
author = {Raluca Gord{\^{a}}n and
Alexander J. Hartemink and
Martha L. Bulyk},
editor = {Bonnie Berger},
title = {Distinguishing Direct versus Indirect Transcription Factor-DNA Interactions},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {574},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_39},
doi = {10.1007/978-3-642-12683-3\_39},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/GordanHB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HalldorssonATI10,
author = {Bjarni V. Halld{\'{o}}rsson and
Derek Aguiar and
Ryan Tarpine and
Sorin Istrail},
editor = {Bonnie Berger},
title = {The Clark Phase-able Sample Size Problem: Long-Range Phasing and Loss
of Heterozygosity in {GWAS}},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {158--173},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_11},
doi = {10.1007/978-3-642-12683-3\_11},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HalldorssonATI10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HalperinLUS10,
author = {Yonit Halperin and
Chaim Linhart and
Igor Ulitsky and
Ron Shamir},
editor = {Bonnie Berger},
title = {Discovering Transcriptional Modules by Combined Analysis of Expression
Profiles and Regulatory Sequences},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {578--579},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_42},
doi = {10.1007/978-3-642-12683-3\_42},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HalperinLUS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HirschSH10,
author = {Michael Hirsch and
Bernhard Sch{\"{o}}lkopf and
Michael Habeck},
editor = {Bonnie Berger},
title = {A New Algorithm for Improving the Resolution of Cryo-EM Density Maps},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {174--188},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_12},
doi = {10.1007/978-3-642-12683-3\_12},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HirschSH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/JangGL10,
author = {Richard Jang and
Xin Gao and
Ming Li},
editor = {Bonnie Berger},
title = {Towards Automated Structure-Based {NMR} Resonance Assignment},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {189--207},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_13},
doi = {10.1007/978-3-642-12683-3\_13},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/JangGL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/JeongKBP10,
author = {Kyowon Jeong and
Sangtae Kim and
Nuno Bandeira and
Pavel A. Pevzner},
editor = {Bonnie Berger},
title = {Gapped Spectral Dictionaries and Their Applications for Database Searches
of Tandem Mass Spectra},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {208--232},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_14},
doi = {10.1007/978-3-642-12683-3\_14},
timestamp = {Fri, 20 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/JeongKBP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KaoS10,
author = {Wei{-}Chun Kao and
Yun S. Song},
editor = {Bonnie Berger},
title = {naiveBayesCall: An Efficient Model-Based Base-Calling Algorithm for
High-Throughput Sequencing},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {233--247},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_15},
doi = {10.1007/978-3-642-12683-3\_15},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KaoS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KelleyK10,
author = {David R. Kelley and
Carl Kingsford},
editor = {Bonnie Berger},
title = {Extracting Between-Pathway Models from {E-MAP} Interactions Using
Expected Graph Compression},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {248--262},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_16},
doi = {10.1007/978-3-642-12683-3\_16},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KelleyK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KimWP10,
author = {Yoo{-}Ah Kim and
Stefan Wuchty and
Teresa M. Przytycka},
editor = {Bonnie Berger},
title = {Simultaneous Identification of Causal Genes and Dys-Regulated Pathways
in Complex Diseases},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {263--280},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_17},
doi = {10.1007/978-3-642-12683-3\_17},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KimWP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KohHT10,
author = {Geoffrey Koh and
David Hsu and
P. S. Thiagarajan},
editor = {Bonnie Berger},
title = {Incremental Signaling Pathway Modeling by Data Integration},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {281--296},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_18},
doi = {10.1007/978-3-642-12683-3\_18},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KohHT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KowalczykBCB10,
author = {Adam Kowalczyk and
Justin Bedo and
Thomas C. Conway and
Bryan Beresford{-}Smith},
editor = {Bonnie Berger},
title = {The Poisson Margin Test for Normalisation Free Significance Analysis
of {NGS} Data},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {297--309},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_19},
doi = {10.1007/978-3-642-12683-3\_19},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KowalczykBCB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KozanitisSKBV10,
author = {Christos Kozanitis and
Christopher T. Saunders and
Semyon Kruglyak and
Vineet Bafna and
George Varghese},
editor = {Bonnie Berger},
title = {Compressing Genomic Sequence Fragments Using SlimGene},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {310--324},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_20},
doi = {10.1007/978-3-642-12683-3\_20},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KozanitisSKBV10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LamLS10,
author = {Fumei Lam and
Charles H. Langley and
Yun S. Song},
editor = {Bonnie Berger},
title = {On the Genealogy of Asexual Diploids},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {325--340},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_21},
doi = {10.1007/978-3-642-12683-3\_21},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LamLS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LasersonJK10,
author = {Jonathan Laserson and
Vladimir Jojic and
Daphne Koller},
editor = {Bonnie Berger},
title = {Genovo: \emph{De Novo} Assembly for Metagenomes},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {341--356},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_22},
doi = {10.1007/978-3-642-12683-3\_22},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LasersonJK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LeeXB10,
author = {Seunghak Lee and
Eric P. Xing and
Michael Brudno},
editor = {Bonnie Berger},
title = {MoGUL: Detecting Common Insertions and Deletions in a Population},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {357--368},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_23},
doi = {10.1007/978-3-642-12683-3\_23},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LeeXB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MisraBRS10,
author = {Navodit Misra and
Guy E. Blelloch and
R. Ravi and
Russell Schwartz},
editor = {Bonnie Berger},
title = {Generalized Buneman Pruning for Inferring the Most Parsimonious Multi-state
Phylogeny},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {369--383},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_24},
doi = {10.1007/978-3-642-12683-3\_24},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MisraBRS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/NoeGK10,
author = {Laurent No{\'{e}} and
Marta G{\^{\i}}rdea and
Gregory Kucherov},
editor = {Bonnie Berger},
title = {Seed Design Framework for Mapping SOLiD Reads},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {384--396},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_25},
doi = {10.1007/978-3-642-12683-3\_25},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/NoeGK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PasaniucZH10,
author = {Bogdan Pasaniuc and
Noah Zaitlen and
Eran Halperin},
editor = {Bonnie Berger},
title = {Accurate Estimation of Expression Levels of Homologous Genes in RNA-seq
Experiments},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {397--409},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_26},
doi = {10.1007/978-3-642-12683-3\_26},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PasaniucZH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PatenDEJMSH10,
author = {Benedict Paten and
Mark Diekhans and
Dent Earl and
John St. John and
Jian Ma and
Bernard B. Suh and
David Haussler},
editor = {Bonnie Berger},
title = {Cactus Graphs for Genome Comparisons},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {410--425},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_27},
doi = {10.1007/978-3-642-12683-3\_27},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PatenDEJMSH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PengLYC10,
author = {Yu Peng and
Henry C. M. Leung and
Siu{-}Ming Yiu and
Francis Y. L. Chin},
editor = {Bonnie Berger},
title = {{IDBA} - {A} Practical Iterative de Bruijn Graph De Novo Assembler},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {426--440},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_28},
doi = {10.1007/978-3-642-12683-3\_28},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PengLYC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PyneHWRLMBMTHJM10,
author = {Saumyadipta Pyne and
Xinli Hu and
Kui Wang and
Elizabeth Rossin and
Tsung{-}I Lin and
Lisa Maier and
Clare Baecher{-}Allan and
Geoffrey J. McLachlan and
Pablo Tamayo and
David Hafler and
Philip L. De Jager and
Jill P. Mesirov},
editor = {Bonnie Berger},
title = {Automated High-Dimensional Flow Cytometric Data Analysis},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {577},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_41},
doi = {10.1007/978-3-642-12683-3\_41},
timestamp = {Wed, 09 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PyneHWRLMBMTHJM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ReynoldsWBN10,
author = {Sheila M. Reynolds and
Zhiping Weng and
Jeff A. Bilmes and
William Stafford Noble},
editor = {Bonnie Berger},
title = {Predicting Nucleosome Positioning Using Multiple Evidence Tracks},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {441--455},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_29},
doi = {10.1007/978-3-642-12683-3\_29},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ReynoldsWBN10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SahaHKRZ10,
author = {Barna Saha and
Allison Hoch and
Samir Khuller and
Louiqa Raschid and
Xiao{-}Ning Zhang},
editor = {Bonnie Berger},
title = {Dense Subgraphs with Restrictions and Applications to Gene Annotation
Graphs},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {456--472},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_30},
doi = {10.1007/978-3-642-12683-3\_30},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SahaHKRZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SalariMWSB10,
author = {Raheleh Salari and
Mathias M{\"{o}}hl and
Sebastian Will and
S{\"{u}}leyman Cenk Sahinalp and
Rolf Backofen},
editor = {Bonnie Berger},
title = {Time and Space Efficient {RNA-RNA} Interaction Prediction via Sparse
Folding},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {473--490},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_31},
doi = {10.1007/978-3-642-12683-3\_31},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SalariMWSB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SettyGP10,
author = {Manu N. Setty and
Alexander Gusev and
Itsik Pe'er},
editor = {Bonnie Berger},
title = {{HLA} Type Inference via Haplotypes Identical by Descent},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {491--505},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_32},
doi = {10.1007/978-3-642-12683-3\_32},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SettyGP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/VandinUR10,
author = {Fabio Vandin and
Eli Upfal and
Benjamin J. Raphael},
editor = {Bonnie Berger},
title = {Algorithms for Detecting Significantly Mutated Pathways in Cancer},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {506--521},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_33},
doi = {10.1007/978-3-642-12683-3\_33},
timestamp = {Mon, 16 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/VandinUR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WidmerLAR10,
author = {Christian Widmer and
Jose Leiva and
Yasemin Altun and
Gunnar R{\"{a}}tsch},
editor = {Bonnie Berger},
title = {Leveraging Sequence Classification by Taxonomy-Based Multitask Learning},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {522--534},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_34},
doi = {10.1007/978-3-642-12683-3\_34},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WidmerLAR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WuY10,
author = {Yu{-}Wei Wu and
Yuzhen Ye},
editor = {Bonnie Berger},
title = {A Novel Abundance-Based Algorithm for Binning Metagenomic Sequences
Using \emph{l}-Tuples},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {535--549},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_35},
doi = {10.1007/978-3-642-12683-3\_35},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WuY10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZengZD10,
author = {Jianyang Zeng and
Pei Zhou and
Bruce Randall Donald},
editor = {Bonnie Berger},
title = {A Markov Random Field Framework for Protein Side-Chain Resonance Assignment},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {550--570},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_36},
doi = {10.1007/978-3-642-12683-3\_36},
timestamp = {Wed, 02 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZengZD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/recomb/2010,
editor = {Bonnie Berger},
title = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3},
doi = {10.1007/978-3-642-12683-3},
isbn = {978-3-642-12682-6},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/2010.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BashirLCRLB09,
author = {Ali Bashir and
Qing Lu and
Dennis Carson and
Benjamin J. Raphael and
Yu{-}Tsueng Liu and
Vineet Bafna},
editor = {Serafim Batzoglou},
title = {Optimizing {PCR} Assays for {DNA} Based Cancer Diagnostics},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {220--235},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_17},
doi = {10.1007/978-3-642-02008-7\_17},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BashirLCRLB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BrucknerHKSS09,
author = {Sharon Bruckner and
Falk H{\"{u}}ffner and
Richard M. Karp and
Ron Shamir and
Roded Sharan},
editor = {Serafim Batzoglou},
title = {Topology-Free Querying of Protein Interaction Networks},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {74--89},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_6},
doi = {10.1007/978-3-642-02008-7\_6},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BrucknerHKSS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChauveE09,
author = {C{\'{e}}dric Chauve and
Nadia El{-}Mabrouk},
editor = {Serafim Batzoglou},
title = {New Perspectives on Gene Family Evolution: Losses in Reconciliation
and a Link with Supertrees},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {46--58},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_4},
doi = {10.1007/978-3-642-02008-7\_4},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ChauveE09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DaskalakisMR09,
author = {Constantinos Daskalakis and
Elchanan Mossel and
S{\'{e}}bastien Roch},
editor = {Serafim Batzoglou},
title = {Phylogenies without Branch Bounds: Contracting the Short, Pruning
the Deep},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {451--465},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_32},
doi = {10.1007/978-3-642-02008-7\_32},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DaskalakisMR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DonzeCLL09,
author = {Alexandre Donz{\'{e}} and
Gilles Clermont and
Axel Legay and
Christopher James Langmead},
editor = {Serafim Batzoglou},
title = {Parameter Synthesis in Nonlinear Dynamical Systems: Application to
Systems Biology},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {155--169},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_11},
doi = {10.1007/978-3-642-02008-7\_11},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DonzeCLL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DostBLSBB09,
author = {Banu Dost and
Nuno Bandeira and
Xiangqian Li and
Zhouxin Shen and
Steve Briggs and
Vineet Bafna},
editor = {Serafim Batzoglou},
title = {Shared Peptides in Mass Spectrometry Based Protein Quantification},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {356--371},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_26},
doi = {10.1007/978-3-642-02008-7\_26},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DostBLSBB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Gusfield09,
author = {Dan Gusfield},
editor = {Serafim Batzoglou},
title = {The Multi-State Perfect Phylogeny Problem with Missing and Removable
Data: Solutions via Integer-Programming and Chordal Graph Theory},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {236--252},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_18},
doi = {10.1007/978-3-642-02008-7\_18},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Gusfield09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HeYYQTY09,
author = {Zengyou He and
Chao Yang and
Can Yang and
Robert Z. Qi and
Jason Po{-}Ming Tam and
Weichuan Yu},
editor = {Serafim Batzoglou},
title = {Optimization-Based Peptide Mass Fingerprinting for Protein Mixture
Identification},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {16--30},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_2},
doi = {10.1007/978-3-642-02008-7\_2},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HeYYQTY09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HescottLCS09,
author = {Benjamin J. Hescott and
Mark D. M. Leiserson and
Lenore Cowen and
Donna K. Slonim},
editor = {Serafim Batzoglou},
title = {Evaluating Between-Pathway Models with Expression Data},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {372--385},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_27},
doi = {10.1007/978-3-642-02008-7\_27},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HescottLCS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HormozdiariAES09,
author = {Fereydoun Hormozdiari and
Can Alkan and
Evan E. Eichler and
S{\"{u}}leyman Cenk Sahinalp},
editor = {Serafim Batzoglou},
title = {Combinatorial Algorithms for Structural Variation Detection in High
Throughput Sequenced Genomes},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {218--219},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_16},
doi = {10.1007/978-3-642-02008-7\_16},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HormozdiariAES09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/JaschekT09,
author = {Rami Jaschek and
Amos Tanay},
editor = {Serafim Batzoglou},
title = {Spatial Clustering of Multivariate Genomic and Epigenomic Information},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {170--183},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_12},
doi = {10.1007/978-3-642-02008-7\_12},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/JaschekT09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KangSYE09,
author = {Eun Yong Kang and
Ilya Shpitser and
Chun Ye and
Eleazar Eskin},
editor = {Serafim Batzoglou},
title = {Detecting the Presence and Absence of Causal Relationships between
Expression of Yeast Genes with Very Few Samples},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {466--481},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_33},
doi = {10.1007/978-3-642-02008-7\_33},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KangSYE09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KangZHE09,
author = {Hyun Min Kang and
Noah Zaitlen and
Buhm Han and
Eleazar Eskin},
editor = {Serafim Batzoglou},
title = {An Adaptive and Memory Efficient Algorithm for Genotype Imputation},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {482--495},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_34},
doi = {10.1007/978-3-642-02008-7\_34},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KangZHE09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KimWK09,
author = {Eagu Kim and
Travis J. Wheeler and
John D. Kececioglu},
editor = {Serafim Batzoglou},
title = {Learning Models for Aligning Protein Sequences with Predicted Secondary
Structure},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {512--531},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_36},
doi = {10.1007/978-3-642-02008-7\_36},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KimWK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KirkpatrickRHK09,
author = {Bonnie Kirkpatrick and
Javier Rosa and
Eran Halperin and
Richard M. Karp},
editor = {Serafim Batzoglou},
title = {Haplotype Inference in Complex Pedigrees},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {108--120},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_8},
doi = {10.1007/978-3-642-02008-7\_8},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KirkpatrickRHK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Lavallee-AdamCB09,
author = {Mathieu Lavall{\'{e}}e{-}Adam and
Benoit Coulombe and
Mathieu Blanchette},
editor = {Serafim Batzoglou},
title = {Detection of Locally Over-Represented {GO} Terms in Protein-Protein
Interaction Networks},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {302--320},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_23},
doi = {10.1007/978-3-642-02008-7\_23},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Lavallee-AdamCB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LuRNB09,
author = {Yong Lu and
Roni Rosenfeld and
Gerard J. Nau and
Ziv Bar{-}Joseph},
editor = {Serafim Batzoglou},
title = {Cross Species Expression Analysis of Innate Immune Response},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {90--107},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_7},
doi = {10.1007/978-3-642-02008-7\_7},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LuRNB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MakinenNSV09,
author = {Veli M{\"{a}}kinen and
Gonzalo Navarro and
Jouni Sir{\'{e}}n and
Niko V{\"{a}}lim{\"{a}}ki},
editor = {Serafim Batzoglou},
title = {Storage and Retrieval of Individual Genomes},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {121--137},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_9},
doi = {10.1007/978-3-642-02008-7\_9},
timestamp = {Wed, 28 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/MakinenNSV09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MohlWB09,
author = {Mathias M{\"{o}}hl and
Sebastian Will and
Rolf Backofen},
editor = {Serafim Batzoglou},
title = {Lifting Prediction to Alignment of {RNA} Pseudoknots},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {285--301},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_22},
doi = {10.1007/978-3-642-02008-7\_22},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MohlWB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/NavlakhaWNPK09,
author = {Saket Navlakha and
James Robert White and
Niranjan Nagarajan and
Mihai Pop and
Carl Kingsford},
editor = {Serafim Batzoglou},
title = {Finding Biologically Accurate Clusterings in Hierarchical Tree Decompositions
Using the Variation of Information},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {400--417},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_29},
doi = {10.1007/978-3-642-02008-7\_29},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/NavlakhaWNPK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PattengaleABMS09,
author = {Nicholas D. Pattengale and
Masoud Alipour and
Olaf R. P. Bininda{-}Emonds and
Bernard M. E. Moret and
Alexandros Stamatakis},
editor = {Serafim Batzoglou},
title = {How Many Bootstrap Replicates Are Necessary?},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {184--200},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_13},
doi = {10.1007/978-3-642-02008-7\_13},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PattengaleABMS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PengX09,
author = {Jian Peng and
Jinbo Xu},
editor = {Serafim Batzoglou},
title = {Boosting Protein Threading Accuracy},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {31--45},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_3},
doi = {10.1007/978-3-642-02008-7\_3},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PengX09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PrabhuP09,
author = {Snehit Prabhu and
Itsik Pe'er},
editor = {Serafim Batzoglou},
title = {Overlapping Pools for High Throughput Targeted Resequencing},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {270},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_20},
doi = {10.1007/978-3-642-02008-7\_20},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PrabhuP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/RamanathanAKL09,
author = {Arvind Ramanathan and
Pratul K. Agarwal and
Maria G. Kurnikova and
Christopher James Langmead},
editor = {Serafim Batzoglou},
title = {An Online Approach for Mining Collective Behaviors from Molecular
Dynamics Simulations},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {138--154},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_10},
doi = {10.1007/978-3-642-02008-7\_10},
timestamp = {Thu, 05 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/RamanathanAKL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Raveh-SadkaLS09,
author = {Tali Raveh{-}Sadka and
Michal Levo and
Eran Segal},
editor = {Serafim Batzoglou},
title = {Incorporating Nucleosomes into Thermodynamic Models of Transcription
Regulation},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {217},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_15},
doi = {10.1007/978-3-642-02008-7\_15},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Raveh-SadkaLS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ReynoldsBN09,
author = {Sheila M. Reynolds and
Jeff A. Bilmes and
William Stafford Noble},
editor = {Serafim Batzoglou},
title = {On the Relationship between {DNA} Periodicity and Local Chromatin
Structure},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {434--450},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_31},
doi = {10.1007/978-3-642-02008-7\_31},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ReynoldsBN09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SharonPMP09,
author = {Itai Sharon and
Amrita Pati and
Victor M. Markowitz and
Ron Y. Pinter},
editor = {Serafim Batzoglou},
title = {A Statistical Framework for the Functional Analysis of Metagenomes},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {496--511},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_35},
doi = {10.1007/978-3-642-02008-7\_35},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SharonPMP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Shibuya09,
author = {Tetsuo Shibuya},
editor = {Serafim Batzoglou},
title = {Searching Protein 3-D Structures in Linear Time},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {1--15},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_1},
doi = {10.1007/978-3-642-02008-7\_1},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Shibuya09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SindiR09,
author = {Suzanne S. Sindi and
Benjamin J. Raphael},
editor = {Serafim Batzoglou},
title = {Identification and Frequency Estimation of Inversion Polymorphisms
from Haplotype Data},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {418--433},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_30},
doi = {10.1007/978-3-642-02008-7\_30},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SindiR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/StegleDWGB09,
author = {Oliver Stegle and
Katherine J. Denby and
David L. Wild and
Zoubin Ghahramani and
Karsten M. Borgwardt},
editor = {Serafim Batzoglou},
title = {A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential
Gene Expression in Microarray Time Series},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {201--216},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_14},
doi = {10.1007/978-3-642-02008-7\_14},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/StegleDWGB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SwensonRLM09,
author = {Krister M. Swenson and
Vaibhav Rajan and
Yu Lin and
Bernard M. E. Moret},
editor = {Serafim Batzoglou},
title = {Sorting Signed Permutations by Inversions in O(nlogn) Time},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {386--399},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_28},
doi = {10.1007/978-3-642-02008-7\_28},
timestamp = {Tue, 31 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SwensonRLM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WaldispuhlOWDBB09,
author = {J{\'{e}}r{\^{o}}me Waldisp{\"{u}}hl and
Charles W. O'Donnell and
Sebastian Will and
Srinivas Devadas and
Rolf Backofen and
Bonnie Berger},
editor = {Serafim Batzoglou},
title = {Simultaneous Alignment and Folding of Protein Sequences},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {339--355},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_25},
doi = {10.1007/978-3-642-02008-7\_25},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WaldispuhlOWDBB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZagordiGRB09,
author = {Osvaldo Zagordi and
Lukas Geyrhofer and
Volker Roth and
Niko Beerenwinkel},
editor = {Serafim Batzoglou},
title = {Deep Sequencing of a Genetically Heterogeneous Sample: Local Haplotype
Reconstruction and Read Error Correction},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {271--284},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_21},
doi = {10.1007/978-3-642-02008-7\_21},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZagordiGRB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhangPXZW09,
author = {Xiang Zhang and
Feng Pan and
Yuying Xie and
Fei Zou and
Wei Wang},
editor = {Serafim Batzoglou},
title = {{COE:} {A} General Approach for Efficient Genome-Wide Two-Locus Epistasis
Test in Disease Association Study},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {253--269},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_19},
doi = {10.1007/978-3-642-02008-7\_19},
timestamp = {Thu, 14 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZhangPXZW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhaoPDFSX09,
author = {Feng Zhao and
Jian Peng and
Joe DeBartolo and
Karl F. Freed and
Tobin R. Sosnick and
Jinbo Xu},
editor = {Serafim Batzoglou},
title = {A Probabilistic Graphical Model for Ab Initio Folding},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {59--73},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_5},
doi = {10.1007/978-3-642-02008-7\_5},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZhaoPDFSX09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhengGB09,
author = {Wei Zheng and
Karl E. Griswold and
Chris Bailey{-}Kellogg},
editor = {Serafim Batzoglou},
title = {Protein Fragment Swapping: {A} Method for Asymmetric, Selective Site-Directed
Recombination},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {321--338},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_24},
doi = {10.1007/978-3-642-02008-7\_24},
timestamp = {Thu, 17 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZhengGB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/recomb/2009,
editor = {Serafim Batzoglou},
title = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7},
doi = {10.1007/978-3-642-02008-7},
isbn = {978-3-642-02007-0},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/2009.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BandeiraNMLDP08,
author = {Nuno Bandeira and
Julio Ng and
Dario Meluzzi and
Roger G. Linington and
Pieter C. Dorrestein and
Pavel A. Pevzner},
editor = {Martin Vingron and
Limsoon Wong},
title = {De Novo Sequencing of Nonribosomal Peptides},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {181--195},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_16},
doi = {10.1007/978-3-540-78839-3\_16},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BandeiraNMLDP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BaymBPB08,
author = {Michael Baym and
Chris Bakal and
Norbert Perrimon and
Bonnie Berger},
editor = {Martin Vingron and
Limsoon Wong},
title = {High-Resolution Modeling of Cellular Signaling Networks},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {257--271},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_22},
doi = {10.1007/978-3-540-78839-3\_22},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BaymBPB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BercoviciGSST08,
author = {Sivan Bercovici and
Dan Geiger and
Liran Shlush and
Karl Skorecki and
Alan A. Templeton},
editor = {Martin Vingron and
Limsoon Wong},
title = {Panel Construction for Mapping in Admixed Populations Via Expected
Mutual Information},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {435--449},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_39},
doi = {10.1007/978-3-540-78839-3\_39},
timestamp = {Sat, 16 Nov 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/BercoviciGSST08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BockerJMS08,
author = {Sebastian B{\"{o}}cker and
Katharina Jahn and
Julia Mixtacki and
Jens Stoye},
editor = {Martin Vingron and
Limsoon Wong},
title = {Computation of Median Gene Clusters},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {331--345},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_28},
doi = {10.1007/978-3-540-78839-3\_28},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/BockerJMS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BurleighBWE08,
author = {J. Gordon Burleigh and
Mukul S. Bansal and
Andr{\'{e}} Wehe and
Oliver Eulenstein},
editor = {Martin Vingron and
Limsoon Wong},
title = {Locating Multiple Gene Duplications through Reconciled Trees},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {273--284},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_24},
doi = {10.1007/978-3-540-78839-3\_24},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BurleighBWE08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Cedar08,
author = {Howard Cedar},
editor = {Martin Vingron and
Limsoon Wong},
title = {Orchestration of {DNA} Methylation},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {65},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_6},
doi = {10.1007/978-3-540-78839-3\_6},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Cedar08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChatterjiYBE08,
author = {Sourav Chatterji and
Ichitaro Yamazaki and
Zhaojun Bai and
Jonathan A. Eisen},
editor = {Martin Vingron and
Limsoon Wong},
title = {CompostBin: {A} {DNA} Composition-Based Algorithm for Binning Environmental
Shotgun Reads},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {17--28},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_3},
doi = {10.1007/978-3-540-78839-3\_3},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ChatterjiYBE08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Cory08,
author = {Suzanne Cory},
editor = {Martin Vingron and
Limsoon Wong},
title = {{BCL-2:} From Translocation to Therapy},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {346},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_29},
doi = {10.1007/978-3-540-78839-3\_29},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Cory08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DattaB08,
author = {Ritendra Datta and
Marshall W. Bern},
editor = {Martin Vingron and
Limsoon Wong},
title = {Spectrum Fusion: Using Multiple Mass Spectra for De Novo Peptide Sequencing},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {140--153},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_13},
doi = {10.1007/978-3-540-78839-3\_13},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DattaB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DessimozMG08,
author = {Christophe Dessimoz and
Daniel Margadant and
Gaston H. Gonnet},
editor = {Martin Vingron and
Limsoon Wong},
title = {{DLIGHT} - Lateral Gene Transfer Detection Using Pairwise Evolutionary
Distances in a Statistical Framework},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {315--330},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_27},
doi = {10.1007/978-3-540-78839-3\_27},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DessimozMG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DueckFJJGEMH08,
author = {Delbert Dueck and
Brendan J. Frey and
Nebojsa Jojic and
Vladimir Jojic and
Guri Giaever and
Andrew Emili and
Gabe Musso and
Robert Hegele},
editor = {Martin Vingron and
Limsoon Wong},
title = {Constructing Treatment Portfolios Using Affinity Propagation},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {360--371},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_31},
doi = {10.1007/978-3-540-78839-3\_31},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DueckFJJGEMH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Eskin08,
author = {Eleazar Eskin},
editor = {Martin Vingron and
Limsoon Wong},
title = {Increasing Power in Association Studies by Using Linkage Disequilibrium
Structure and Molecular Function as Prior Information},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {434},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_38},
doi = {10.1007/978-3-540-78839-3\_38},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Eskin08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/FlannickNDSB08,
author = {Jason Flannick and
Antal F. Novak and
Chuong B. Do and
Balaji S. Srinivasan and
Serafim Batzoglou},
editor = {Martin Vingron and
Limsoon Wong},
title = {Automatic Parameter Learning for Multiple Network Alignment},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {214--231},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_19},
doi = {10.1007/978-3-540-78839-3\_19},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/FlannickNDSB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/FriedelKZ08,
author = {Caroline C. Friedel and
Jan Krumsiek and
Ralf Zimmer},
editor = {Martin Vingron and
Limsoon Wong},
title = {Bootstrapping the Interactome: Unsupervised Identification of Protein
Complexes in Yeast},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {3--16},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_2},
doi = {10.1007/978-3-540-78839-3\_2},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/FriedelKZ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GordanNH08,
author = {Raluca Gord{\^{a}}n and
Leelavati Narlikar and
Alexander J. Hartemink},
editor = {Martin Vingron and
Limsoon Wong},
title = {A Fast, Alignment-Free, Conservation-Based Method for Transcription
Factor Binding Site Discovery},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {98--111},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_9},
doi = {10.1007/978-3-540-78839-3\_9},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/GordanNH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HawkinsB08,
author = {John Hawkins and
Timothy L. Bailey},
editor = {Martin Vingron and
Limsoon Wong},
title = {The Statistical Power of Phylogenetic Motif Models},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {112--126},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_10},
doi = {10.1007/978-3-540-78839-3\_10},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HawkinsB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/IerselKKSHB08,
author = {Leo van Iersel and
Judith Keijsper and
Steven Kelk and
Leen Stougie and
Ferry Hagen and
Teun Boekhout},
editor = {Martin Vingron and
Limsoon Wong},
title = {Constructing Level-2 Phylogenetic Networks from Triplets},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {450--462},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_40},
doi = {10.1007/978-3-540-78839-3\_40},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/IerselKKSHB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KalaevBS08,
author = {Maxim Kalaev and
Vineet Bafna and
Roded Sharan},
editor = {Martin Vingron and
Limsoon Wong},
title = {Fast and Accurate Alignment of Multiple Protein Networks},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {246--256},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_21},
doi = {10.1007/978-3-540-78839-3\_21},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KalaevBS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KiracO08,
author = {Mustafa Kirac and
Gultekin {\"{O}}zsoyoglu},
editor = {Martin Vingron and
Limsoon Wong},
title = {Protein Function Prediction Based on Patterns in Biological Networks},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {197--213},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_18},
doi = {10.1007/978-3-540-78839-3\_18},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KiracO08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Lee08,
author = {Sang Yup Lee},
editor = {Martin Vingron and
Limsoon Wong},
title = {Systems Metabolic Engineering},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {196},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_17},
doi = {10.1007/978-3-540-78839-3\_17},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Lee08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LiALRST08,
author = {Yong Fuga Li and
Randy J. Arnold and
Yixue Li and
Predrag Radivojac and
Quanhu Sheng and
Haixu Tang},
editor = {Martin Vingron and
Limsoon Wong},
title = {A Bayesian Approach to Protein Inference Problem in Shotgun Proteomics},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {167--180},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_15},
doi = {10.1007/978-3-540-78839-3\_15},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LiALRST08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LinQSYDB08,
author = {Yu Lin and
Yantao Qiao and
Shiwei Sun and
Chungong Yu and
Gongjin Dong and
Dongbo Bu},
editor = {Martin Vingron and
Limsoon Wong},
title = {A Fragmentation Event Model for Peptide Identification by Mass Spectrometry},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {154--166},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_14},
doi = {10.1007/978-3-540-78839-3\_14},
timestamp = {Tue, 31 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LinQSYDB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LinRSUX08,
author = {Tien{-}ho Lin and
Pradipta Ray and
Geir Kjetil Sandve and
Selen Uguroglu and
Eric P. Xing},
editor = {Martin Vingron and
Limsoon Wong},
title = {BayCis: {A} Bayesian Hierarchical {HMM} for Cis-Regulatory Module
Decoding in Metazoan Genomes},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {66--81},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_7},
doi = {10.1007/978-3-540-78839-3\_7},
timestamp = {Mon, 16 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LinRSUX08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Liu08,
author = {Edison T. Liu},
editor = {Martin Vingron and
Limsoon Wong},
title = {Transcriptional Regulation and Cancer Genomics},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {127},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_11},
doi = {10.1007/978-3-540-78839-3\_11},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Liu08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LongPLKM08,
author = {Fuhui Long and
Hanchuan Peng and
Xiao Liu and
Stuart K. Kim and
Gene Myers},
editor = {Martin Vingron and
Limsoon Wong},
title = {Automatic Recognition of Cells {(ARC)} for 3D Images of C. elegans},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {128--139},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_12},
doi = {10.1007/978-3-540-78839-3\_12},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LongPLKM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Lupas08,
author = {Andrei N. Lupas},
editor = {Martin Vingron and
Limsoon Wong},
title = {At the Origin of Life: How Did Folded Proteins Evolve?},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {272},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_23},
doi = {10.1007/978-3-540-78839-3\_23},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Lupas08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LyngsoSH08,
author = {Rune B. Lyngs{\o} and
Yun S. Song and
Jotun Hein},
editor = {Martin Vingron and
Limsoon Wong},
title = {Accurate Computation of Likelihoods in the Coalescent with Recombination
Via Parsimony},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {463--477},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_41},
doi = {10.1007/978-3-540-78839-3\_41},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LyngsoSH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MaS08,
author = {Bin Ma and
Xiaoming Sun},
editor = {Martin Vingron and
Limsoon Wong},
title = {More Efficient Algorithms for Closest String and Substring Problems},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {396--409},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_33},
doi = {10.1007/978-3-540-78839-3\_33},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MaS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MedvedevB08,
author = {Paul Medvedev and
Michael Brudno},
editor = {Martin Vingron and
Limsoon Wong},
title = {Ab Initio Whole Genome Shotgun Assembly with Mated Short Reads},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {50--64},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_5},
doi = {10.1007/978-3-540-78839-3\_5},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MedvedevB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MehanNKWZ08,
author = {Michael R. Mehan and
Juan Nunez{-}Iglesias and
Mrinal Kalakrishnan and
Michael S. Waterman and
Xianghong Jasmine Zhou},
editor = {Martin Vingron and
Limsoon Wong},
title = {An Integrative Network Approach to Map the Transcriptome to the Phenome},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {232--245},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_20},
doi = {10.1007/978-3-540-78839-3\_20},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MehanNKWZ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SammethVG08,
author = {Michael Sammeth and
Gabriel Valiente and
Roderic Guig{\'{o}}},
editor = {Martin Vingron and
Limsoon Wong},
title = {Bubbles: Alternative Splicing Events of Arbitrary Dimension in Splicing
Graphs},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {372--395},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_32},
doi = {10.1007/978-3-540-78839-3\_32},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SammethVG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SankararamanKHJ08,
author = {Sriram Sankararaman and
Gad Kimmel and
Eran Halperin and
Michael I. Jordan},
editor = {Martin Vingron and
Limsoon Wong},
title = {On the Inference of Ancestries in Admixed Populations},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {424--433},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_37},
doi = {10.1007/978-3-540-78839-3\_37},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SankararamanKHJ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ShiSMB08,
author = {Yanxin Shi and
Itamar Simon and
Tom M. Mitchell and
Ziv Bar{-}Joseph},
editor = {Martin Vingron and
Limsoon Wong},
title = {A Combined Expression-Interaction Model for Inferring the Temporal
Activity of Transcription Factors},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {82--97},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_8},
doi = {10.1007/978-3-540-78839-3\_8},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ShiSMB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SmirnovC08,
author = {Denis Smirnov and
Vivian G. Cheung},
editor = {Martin Vingron and
Limsoon Wong},
title = {Disruption of a Transcriptional Regulatory Pathway Contributes to
Phenotypes in Carriers of Ataxia Telangiectasia},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {410},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_34},
doi = {10.1007/978-3-540-78839-3\_34},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SmirnovC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Smith08,
author = {Temple F. Smith},
editor = {Martin Vingron and
Limsoon Wong},
title = {Computational Biology: Its Challenges Past, Present, and Future},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {1--2},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_1},
doi = {10.1007/978-3-540-78839-3\_1},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Smith08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/StegleKDW08,
author = {Oliver Stegle and
Anitha Kannan and
Richard Durbin and
John M. Winn},
editor = {Martin Vingron and
Limsoon Wong},
title = {Accounting for Non-genetic Factors Improves the Power of eQTL Studies},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {411--422},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_35},
doi = {10.1007/978-3-540-78839-3\_35},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/StegleKDW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SundquistFDB08,
author = {Andreas Sundquist and
Eugene Fratkin and
Chuong B. Do and
Serafim Batzoglou},
editor = {Martin Vingron and
Limsoon Wong},
title = {Effects of Genetic Divergence in Identifying Ancestral Origin Using
{HAPAA}},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {423},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_36},
doi = {10.1007/978-3-540-78839-3\_36},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SundquistFDB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/UlitskyKS08,
author = {Igor Ulitsky and
Richard M. Karp and
Ron Shamir},
editor = {Martin Vingron and
Limsoon Wong},
title = {Detecting Disease-Specific Dysregulated Pathways Via Analysis of Clinical
Expression Profiles},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {347--359},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_30},
doi = {10.1007/978-3-540-78839-3\_30},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/UlitskyKS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhangGXL08,
author = {Jing Zhang and
Xin Gao and
Jinbo Xu and
Ming Li},
editor = {Martin Vingron and
Limsoon Wong},
title = {Rapid and Accurate Protein Side Chain Prediction with Local Backbone
Information},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {285--299},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_25},
doi = {10.1007/978-3-540-78839-3\_25},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZhangGXL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhangSVGSM08,
author = {Yu Zhang and
Giltae Song and
Tom{\'{a}}s Vinar and
Eric D. Green and
Adam C. Siepel and
Webb Miller},
editor = {Martin Vingron and
Limsoon Wong},
title = {Reconstructing the Evolutionary History of Complex Human Gene Clusters},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {29--49},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_4},
doi = {10.1007/978-3-540-78839-3\_4},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZhangSVGSM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhengFB08,
author = {Wei Zheng and
Alan M. Friedman and
Chris Bailey{-}Kellogg},
editor = {Martin Vingron and
Limsoon Wong},
title = {Algorithms for Joint Optimization of Stability and Diversity in Planning
Combinatorial Libraries of Chimeric Proteins},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {300--314},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_26},
doi = {10.1007/978-3-540-78839-3\_26},
timestamp = {Thu, 17 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZhengFB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/recomb/2008,
editor = {Martin Vingron and
Limsoon Wong},
title = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3},
doi = {10.1007/978-3-540-78839-3},
isbn = {978-3-540-78838-6},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/2008.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BansalBEW07,
author = {Mukul S. Bansal and
J. Gordon Burleigh and
Oliver Eulenstein and
Andr{\'{e}} Wehe},
editor = {Terence P. Speed and
Haiyan Huang},
title = {Heuristics for the Gene-Duplication Problem: {A} \emph{Theta} {(}
\emph{n} {)} Speed-Up for the Local Search},
booktitle = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
pages = {238--252},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5\_17},
doi = {10.1007/978-3-540-71681-5\_17},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BansalBEW07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Ben-DorLTRBBWBY07,
author = {Amir Ben{-}Dor and
Doron Lipson and
Anya Tsalenko and
Mark Reimers and
Lars O. Baumbusch and
Michael T. Barrett and
John N. Weinstein and
Anne{-}Lise B{\o}rresen{-}Dale and
Zohar Yakhini},
editor = {Terence P. Speed and
Haiyan Huang},
title = {Framework for Identifying Common Aberrations in {DNA} Copy Number
Data},
booktitle = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
pages = {122--136},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5\_9},
doi = {10.1007/978-3-540-71681-5\_9},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Ben-DorLTRBBWBY07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BernG07,
author = {Marshall W. Bern and
David Goldberg},
editor = {Terence P. Speed and
Haiyan Huang},
title = {Improved Ranking Functions for Protein and Modification-Site Identifications},
booktitle = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
pages = {444--458},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5\_31},
doi = {10.1007/978-3-540-71681-5\_31},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BernG07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BernardVH07,
author = {Allister Bernard and
David S. Vaughn and
Alexander J. Hartemink},
editor = {Terence P. Speed and
Haiyan Huang},
title = {Reconstructing the Topology of Protein Complexes},
booktitle = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
pages = {32--46},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5\_3},
doi = {10.1007/978-3-540-71681-5\_3},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BernardVH07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/CoronaRE07,
author = {Erik Corona and
Benjamin J. Raphael and
Eleazar Eskin},
editor = {Terence P. Speed and
Haiyan Huang},
title = {Identification of Deletion Polymorphisms from Haplotypes},
booktitle = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
pages = {354--365},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5\_25},
doi = {10.1007/978-3-540-71681-5\_25},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/CoronaRE07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DostSGRBS07,
author = {Banu Dost and
Tomer Shlomi and
Nitin Gupta and
Eytan Ruppin and
Vineet Bafna and
Roded Sharan},
editor = {Terence P. Speed and
Haiyan Huang},
title = {QNet: {A} Tool for Querying Protein Interaction Networks},
booktitle = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
pages = {1--15},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5\_1},
doi = {10.1007/978-3-540-71681-5\_1},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DostSGRBS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GargXMM07,
author = {Abhishek Garg and
Ioannis Xenarios and
Luis Mendoza and
Giovanni De Micheli},
editor = {Terence P. Speed and
Haiyan Huang},
title = {An Efficient Method for Dynamic Analysis of Gene Regulatory Networks
and \emph{in silico} Gene Perturbation Experiments},
booktitle = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
pages = {62--76},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5\_5},
doi = {10.1007/978-3-540-71681-5\_5},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/GargXMM07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GrochowK07,
author = {Joshua A. Grochow and
Manolis Kellis},
editor = {Terence P. Speed and
Haiyan Huang},
title = {Network Motif Discovery Using Subgraph Enumeration and Symmetry-Breaking},
booktitle = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
pages = {92--106},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5\_7},
doi = {10.1007/978-3-540-71681-5\_7},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/GrochowK07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HarmonAHWCSR07,
author = {Cyrus L. Harmon and
Parvez Ahammad and
Ann Hammonds and
Richard Weiszmann and
Susan E. Celniker and
Shankar Sastry and
Gerald M. Rubin},
editor = {Terence P. Speed and
Haiyan Huang},
title = {Comparative Analysis of Spatial Patterns of Gene Expression in \emph{Drosophila
melanogaster} Imaginal Discs},
booktitle = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
pages = {533--547},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5\_37},
doi = {10.1007/978-3-540-71681-5\_37},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HarmonAHWCSR07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HusonK07,
author = {Daniel H. Huson and
Tobias H. Kl{\"{o}}pper},
editor = {Terence P. Speed and
Haiyan Huang},
title = {Beyond Galled Trees - Decomposition and Computation of Galled Networks},
booktitle = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
pages = {211--225},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5\_15},
doi = {10.1007/978-3-540-71681-5\_15},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HusonK07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/InbarSDNW07,
author = {Yuval Inbar and
Dina Schneidman{-}Duhovny and
Oranit Dror and
Ruth Nussinov and
Haim J. Wolfson},
editor = {Terence P. Speed and
Haiyan Huang},
title = {Deterministic Pharmacophore Detection Via Multiple Flexible Alignment
of Drug-Like Molecules},
booktitle = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
pages = {412--429},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5\_29},
doi = {10.1007/978-3-540-71681-5\_29},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/InbarSDNW07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KamisettyXL07,
author = {Hetunandan Kamisetty and
Eric P. Xing and
Christopher James Langmead},
editor = {Terence P. Speed and
Haiyan Huang},
title = {Free Energy Estimates of All-Atom Protein Structures Using Generalized
Belief Propagation},
booktitle = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
pages = {366--380},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5\_26},
doi = {10.1007/978-3-540-71681-5\_26},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KamisettyXL07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KannanEF07,
author = {Anitha Kannan and
Andrew Emili and
Brendan J. Frey},
editor = {Terence P. Speed and
Haiyan Huang},
title = {A Bayesian Model That Links Microarray mRNA Measurements to Mass Spectrometry
Protein Measurements},
booktitle = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
pages = {325--338},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5\_23},
doi = {10.1007/978-3-540-71681-5\_23},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KannanEF07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KlammerYMN07,
author = {Aaron A. Klammer and
Xianhua Yi and
Michael J. MacCoss and
William Stafford Noble},
editor = {Terence P. Speed and
Haiyan Huang},
title = {Peptide Retention Time Prediction Yields Improved Tandem Mass Spectrum
Identification for Diverse Chromatography Conditions},
booktitle = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
pages = {459--472},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5\_32},
doi = {10.1007/978-3-540-71681-5\_32},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KlammerYMN07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KuwaharaM07,
author = {Hiroyuki Kuwahara and
Chris J. Myers},
editor = {Terence P. Speed and
Haiyan Huang},
title = {Production-Passage-Time Approximation: {A} New Approximation Method
to Accelerate the Simulation Process of Enzymatic Reactions},
booktitle = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
pages = {166--180},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5\_12},
doi = {10.1007/978-3-540-71681-5\_12},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KuwaharaM07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LeeS07,
author = {Wah{-}Heng Lee and
Wing{-}Kin Sung},
editor = {Terence P. Speed and
Haiyan Huang},
title = {RB-Finder: An Improved Distance-Based Sliding Window Method to Detect
Recombination Breakpoints},
booktitle = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
pages = {518--532},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5\_36},
doi = {10.1007/978-3-540-71681-5\_36},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LeeS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LuS07,
author = {Yue Lu and
Sing{-}Hoi Sze},
editor = {Terence P. Speed and
Haiyan Huang},
title = {Multiple Sequence Alignment Based on Profile Alignment of Intermediate
Sequences},
booktitle = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
pages = {283--295},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5\_20},
doi = {10.1007/978-3-540-71681-5\_20},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LuS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MuraliR07,
author = {T. M. Murali and
Corban G. Rivera},
editor = {Terence P. Speed and
Haiyan Huang},
title = {Network Legos: Building Blocks of Cellular Wiring Diagrams},
booktitle = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
pages = {47--61},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5\_4},
doi = {10.1007/978-3-540-71681-5\_4},
timestamp = {Thu, 18 Jul 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MuraliR07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/NarlikarGH07,
author = {Leelavati Narlikar and
Raluca Gord{\^{a}}n and
Alexander J. Hartemink},
editor = {Terence P. Speed and
Haiyan Huang},
title = {Nucleosome Occupancy Information Improves \emph{de novo} Motif Discovery},
booktitle = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
pages = {107--121},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5\_8},
doi = {10.1007/978-3-540-71681-5\_8},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/NarlikarGH07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/NighamH07,
author = {Anshul Nigham and
David Hsu},
editor = {Terence P. Speed and
Haiyan Huang},
title = {Protein Conformational Flexibility Analysis with Noisy Data},
booktitle = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
pages = {396--411},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5\_28},
doi = {10.1007/978-3-540-71681-5\_28},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/NighamH07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ORourkeZJE07,
author = {Sean O'Rourke and
Noah Zaitlen and
Nebojsa Jojic and
Eleazar Eskin},
editor = {Terence P. Speed and
Haiyan Huang},
title = {Reconstructing the Phylogeny of Mobile Elements},
booktitle = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
pages = {196--210},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5\_14},
doi = {10.1007/978-3-540-71681-5\_14},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ORourkeZJE07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Ozery-FlatoS07,
author = {Michal Ozery{-}Flato and
Ron Shamir},
editor = {Terence P. Speed and
Haiyan Huang},
title = {Rearrangements in Genomes with Centromeres Part {I:} Translocations},
booktitle = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
pages = {339--353},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5\_24},
doi = {10.1007/978-3-540-71681-5\_24},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Ozery-FlatoS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PhilippakisQBB07,
author = {Anthony A. Philippakis and
Aaron M. Qureshi and
Michael F. Berger and
Martha L. Bulyk},
editor = {Terence P. Speed and
Haiyan Huang},
title = {Design of Compact, Universal {DNA} Microarrays for Protein Binding
Microarray Experiments},
booktitle = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
pages = {430--443},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5\_30},
doi = {10.1007/978-3-540-71681-5\_30},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PhilippakisQBB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Piccolboni07,
author = {Antonio Piccolboni},
editor = {Terence P. Speed and
Haiyan Huang},
title = {Multivariate Segmentation in the Analysis of Transcription Tiling
Array Data},
booktitle = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
pages = {311--324},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5\_22},
doi = {10.1007/978-3-540-71681-5\_22},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Piccolboni07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PradinesDRF07,
author = {Jo{\"{e}}l R. Pradines and
Vlado Danc{\'{\i}}k and
Alan Ruttenberg and
Victor Farutin},
editor = {Terence P. Speed and
Haiyan Huang},
title = {Connectedness Profiles in Protein Networks for the Analysis of Gene
Expression Data},
booktitle = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
pages = {296--310},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5\_21},
doi = {10.1007/978-3-540-71681-5\_21},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PradinesDRF07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Schulz-TrieglaffHGHR07,
author = {Ole Schulz{-}Trieglaff and
Rene Hussong and
Clemens Gr{\"{o}}pl and
Andreas Hildebrandt and
Knut Reinert},
editor = {Terence P. Speed and
Haiyan Huang},
title = {A Fast and Accurate Algorithm for the Quantification of Peptides from
Mass Spectrometry Data},
booktitle = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
pages = {473--487},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5\_33},
doi = {10.1007/978-3-540-71681-5\_33},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/Schulz-TrieglaffHGHR07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SharonS07,
author = {Eilon Sharon and
Eran Segal},
editor = {Terence P. Speed and
Haiyan Huang},
title = {A Feature-Based Approach to Modeling Protein-DNA Interactions},
booktitle = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
pages = {77--91},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5\_6},
doi = {10.1007/978-3-540-71681-5\_6},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SharonS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ShiGWX07,
author = {Yanxin Shi and
Fan Guo and
Wei Wu and
Eric P. Xing},
editor = {Terence P. Speed and
Haiyan Huang},
title = {GIMscan: {A} New Statistical Method for Analyzing Whole-Genome Array
{CGH} Data},
booktitle = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
pages = {151--165},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5\_11},
doi = {10.1007/978-3-540-71681-5\_11},
timestamp = {Mon, 25 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ShiGWX07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SinghXB07,
author = {Rohit Singh and
Jinbo Xu and
Bonnie Berger},
editor = {Terence P. Speed and
Haiyan Huang},
title = {Pairwise Global Alignment of Protein Interaction Networks by Matching
Neighborhood Topology},
booktitle = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
pages = {16--31},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5\_2},
doi = {10.1007/978-3-540-71681-5\_2},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SinghXB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SridharRH07,
author = {Srinath Sridhar and
Satish Rao and
Eran Halperin},
editor = {Terence P. Speed and
Haiyan Huang},
title = {An Efficient and Accurate Graph-Based Approach to Detect Population
Substructure},
booktitle = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
pages = {503--517},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5\_35},
doi = {10.1007/978-3-540-71681-5\_35},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SridharRH07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/TangTTA07,
author = {Xinyu Tang and
Shawna L. Thomas and
Lydia Tapia and
Nancy M. Amato},
editor = {Terence P. Speed and
Haiyan Huang},
title = {Tools for Simulating and Analyzing {RNA} Folding Kinetics},
booktitle = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
pages = {268--282},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5\_19},
doi = {10.1007/978-3-540-71681-5\_19},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/TangTTA07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WangCMPCI07,
author = {Wenyi Wang and
Benilton S. Carvalho and
Nate Miller and
Jonathan Pevsner and
Aravinda Chakravarti and
Rafael A. Irizarry},
editor = {Terence P. Speed and
Haiyan Huang},
title = {Estimating Genome-Wide Copy Number Using Allele Specific Mixture Models},
booktitle = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
pages = {137--150},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5\_10},
doi = {10.1007/978-3-540-71681-5\_10},
timestamp = {Fri, 26 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/WangCMPCI07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WexlerG07,
author = {Ydo Wexler and
Dan Geiger},
editor = {Terence P. Speed and
Haiyan Huang},
title = {Variational Upper Bounds for Probabilistic Phylogenetic Models},
booktitle = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
pages = {226--237},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5\_16},
doi = {10.1007/978-3-540-71681-5\_16},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WexlerG07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Wu07,
author = {Yufeng Wu},
editor = {Terence P. Speed and
Haiyan Huang},
title = {Association Mapping of Complex Diseases with Ancestral Recombination
Graphs: Models and Efficient Algorithms},
booktitle = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
pages = {488--502},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5\_34},
doi = {10.1007/978-3-540-71681-5\_34},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Wu07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/YanoverSW07,
author = {Chen Yanover and
Ora Schueler{-}Furman and
Yair Weiss},
editor = {Terence P. Speed and
Haiyan Huang},
title = {Minimizing and Learning Energy Functions for Side-Chain Prediction},
booktitle = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
pages = {381--395},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5\_27},
doi = {10.1007/978-3-540-71681-5\_27},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/YanoverSW07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/YuJEP07,
author = {Chun{-}Nam John Yu and
Thorsten Joachims and
Ron Elber and
Jaroslaw Pillardy},
editor = {Terence P. Speed and
Haiyan Huang},
title = {Support Vector Training of Protein Alignment Models},
booktitle = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
pages = {253--267},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5\_18},
doi = {10.1007/978-3-540-71681-5\_18},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/YuJEP07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZaitlenRHJ07,
author = {Noah Zaitlen and
Manuel Reyes{-}Gomez and
David Heckerman and
Nebojsa Jojic},
editor = {Terence P. Speed and
Haiyan Huang},
title = {Shift-Invariant Adaptive Double Threading: Learning {MHC} {II} - Peptide
Binding},
booktitle = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
pages = {181--195},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5\_13},
doi = {10.1007/978-3-540-71681-5\_13},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZaitlenRHJ07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/recomb/2006sbcp,
editor = {Trey Ideker and
Vineet Bafna},
title = {Systems Biology and Computational Proteomics, Joint {RECOMB} 2006
Satellite Workshops on Systems Biology and on Computational Proteomics,
San Diego, CA, USA, December 1-3, 2006, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4532},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-73060-6},
doi = {10.1007/978-3-540-73060-6},
isbn = {978-3-540-73059-0},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/2006sbcp.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/recomb/2007,
editor = {Terence P. Speed and
Haiyan Huang},
title = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5},
doi = {10.1007/978-3-540-71681-5},
isbn = {3-540-71680-7},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/2007.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/AerniE06,
author = {Sarah J. Aerni and
Eleazar Eskin},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {10 Years of the International Conference on Research in Computational
Molecular Biology {(RECOMB)}},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {546--562},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_45},
doi = {10.1007/11732990\_45},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/AerniE06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/AlkanKSUEZB06,
author = {Can Alkan and
Emre Karako{\c{c}} and
S{\"{u}}leyman Cenk Sahinalp and
Peter J. Unrau and
H. Alexander Ebhardt and
Kaizhong Zhang and
Jeremy Buhler},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {{RNA} Secondary Structure Prediction Via Energy Density Minimization},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {130--142},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_12},
doi = {10.1007/11732990\_12},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/AlkanKSUEZB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/AnderssonL06,
author = {Samuel A. Andersson and
Jens Lagergren},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Motif Yggdrasil: Sampling from a Tree Mixture Model},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {458--472},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_39},
doi = {10.1007/11732990\_39},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/AnderssonL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/AngelovHKKK06,
author = {Stanislav Angelov and
Boulos Harb and
Sampath Kannan and
Sanjeev Khanna and
Junhyong Kim},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Efficient Enumeration of Phylogenetically Informative Substrings},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {248--264},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_22},
doi = {10.1007/11732990\_22},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/AngelovHKKK06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BaderO06,
author = {Martin Bader and
Enno Ohlebusch},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Sorting by Weighted Reversals, Transpositions, and Inverted Transpositions},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {563--577},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_46},
doi = {10.1007/11732990\_46},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BaderO06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BandeiraTFP06,
author = {Nuno Bandeira and
Dekel Tsur and
Ari Frank and
Pavel A. Pevzner},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {A New Approach to Protein Identification},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {363--378},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_31},
doi = {10.1007/11732990\_31},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BandeiraTFP06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/CameronBW06,
author = {Michael Cameron and
Yaniv Bernstein and
Hugh E. Williams},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Clustering Near-Identical Sequences for Fast Homology Search},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {175--189},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_16},
doi = {10.1007/11732990\_16},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/CameronBW06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChenFBDKLKLK06,
author = {Brian Y. Chen and
Viacheslav Fofanov and
Drew H. Bryant and
Bradley D. Dodson and
David M. Kristensen and
Andreas Martin Lisewski and
Marek Kimmel and
Olivier Lichtarge and
Lydia E. Kavraki},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Geometric Sieving: Automated Distributed Optimization of 3D Motifs
for Protein Function Prediction},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {500--515},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_42},
doi = {10.1007/11732990\_42},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ChenFBDKLKLK06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChennubhotlaB06,
author = {Chakra Chennubhotla and
Ivet Bahar},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Markov Methods for Hierarchical Coarse-Graining of Large Protein Dynamics},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {379--393},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_32},
doi = {10.1007/11732990\_32},
timestamp = {Fri, 20 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/ChennubhotlaB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChiangABHL06,
author = {Tsung{-}Han Chiang and
Mehmet Serkan Apaydin and
Douglas L. Brutlag and
David Hsu and
Jean{-}Claude Latombe},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Predicting Experimental Quantities in Protein Folding Kinetics Using
Stochastic Roadmap Simulation},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {410--424},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_34},
doi = {10.1007/11732990\_34},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ChiangABHL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChorT06,
author = {Benny Chor and
Tamir Tuller},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Biological Networks: Comparison, Conservation, and Evolutionary Trees},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {30--44},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_3},
doi = {10.1007/11732990\_3},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ChorT06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/CsurosM06,
author = {Mikl{\'{o}}s Cs{\"{u}}r{\"{o}}s and
Istv{\'{a}}n Mikl{\'{o}}s},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {A Probabilistic Model for Gene Content Evolution with Duplication,
Loss, and Horizontal Transfer},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {206--220},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_18},
doi = {10.1007/11732990\_18},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/CsurosM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DarotYH06,
author = {Jeremy Darot and
Chen{-}Hsiang Yeang and
David Haussler},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Detecting the Dependent Evolution of Biosequences},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {595--609},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_48},
doi = {10.1007/11732990\_48},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DarotYH06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DaskalakisHJMMR06,
author = {Constantinos Daskalakis and
Cameron Hill and
Alexander Jaffe and
Radu Mihaescu and
Elchanan Mossel and
Satish Rao},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Maximal Accurate Forests from Distance Matrices},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {281--295},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_24},
doi = {10.1007/11732990\_24},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DaskalakisHJMMR06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DoGB06,
author = {Chuong B. Do and
Samuel S. Gross and
Serafim Batzoglou},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {CONTRAlign: Discriminative Training for Protein Sequence Alignment},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {160--174},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_15},
doi = {10.1007/11732990\_15},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DoGB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DostHZB06,
author = {Banu Dost and
Buhm Han and
Shaojie Zhang and
Vineet Bafna},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Structural Alignment of Pseudoknotted {RNA}},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {143--158},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_13},
doi = {10.1007/11732990\_13},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DostHZB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/FasuloEWNE06,
author = {Daniel P. Fasulo and
Anne{-}Katrin Emde and
Lu{-}Yong Wang and
Karin Noy and
Nathan Edwards},
editor = {Trey Ideker and
Vineet Bafna},
title = {Alignment of Mass Spectrometry Data by Clique Finding and Optimization},
booktitle = {Systems Biology and Computational Proteomics, Joint {RECOMB} 2006
Satellite Workshops on Systems Biology and on Computational Proteomics,
San Diego, CA, USA, December 1-3, 2006, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4532},
pages = {119--129},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/978-3-540-73060-6\_9},
doi = {10.1007/978-3-540-73060-6\_9},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/FasuloEWNE06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/FuCVNZJ06,
author = {Zheng Fu and
Xin Chen and
Vladimir Vacic and
Peng Nan and
Yang Zhong and
Tao Jiang},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {A Parsimony Approach to Genome-Wide Ortholog Assignment},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {578--594},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_47},
doi = {10.1007/11732990\_47},
timestamp = {Wed, 22 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/FuCVNZJ06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Gavin06,
author = {Anne{-}Claude Gavin},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Global Interaction Networks Probed by Mass Spectrometry},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {83--83},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_7},
doi = {10.1007/11732990\_7},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Gavin06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GeorgievLD06,
author = {Ivelin Georgiev and
Ryan H. Lilien and
Bruce Randall Donald},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {A Novel Minimized Dead-End Elimination Criterion and Its Application
to Protein Redesign in a Hybrid Scoring and Search Algorithm for Computing
Partition Functions over Molecular Ensembles},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {530--545},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_44},
doi = {10.1007/11732990\_44},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/GeorgievLD06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GrossmannBRV06,
author = {Steffen Grossmann and
Sebastian Bauer and
Peter N. Robinson and
Martin Vingron},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {An Improved Statistic for Detecting Over-Represented Gene Ontology
Annotations in Gene Sets},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {85--98},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_9},
doi = {10.1007/11732990\_9},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/GrossmannBRV06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Haussler06,
author = {David Haussler},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Ultraconserved Elements, Living Fossil Transposons, and Rapid Bursts
of Change: Reconstructing the Uneven Evolutionary History of the Human
Genome},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {336--337},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_28},
doi = {10.1007/11732990\_28},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Haussler06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HeckermanKL06,
author = {David Heckerman and
Carl Myers Kadie and
Jennifer Listgarten},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Leveraging Information Across {HLA} Alleles/Supertypes Improves Epitope
Prediction},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {296--308},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_25},
doi = {10.1007/11732990\_25},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HeckermanKL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HormozdiariBPS06,
author = {Fereydoun Hormozdiari and
Petra Berenbrink and
Natasa Przulj and
S{\"{u}}leyman Cenk Sahinalp},
editor = {Trey Ideker and
Vineet Bafna},
title = {Not All Scale Free Networks Are Born Equal: The Role of the Seed Graph
in {PPI} Network Emulation},
booktitle = {Systems Biology and Computational Proteomics, Joint {RECOMB} 2006
Satellite Workshops on Systems Biology and on Computational Proteomics,
San Diego, CA, USA, December 1-3, 2006, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4532},
pages = {1--13},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/978-3-540-73060-6\_1},
doi = {10.1007/978-3-540-73060-6\_1},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HormozdiariBPS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HuangMF06,
author = {Jim C. Huang and
Quaid Morris and
Brendan J. Frey},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Detecting MicroRNA Targets by Linking Sequence, MicroRNA and Gene
Expression Data},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {114--129},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_11},
doi = {10.1007/11732990\_11},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HuangMF06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HuangZRB06,
author = {Hailiang Huang and
Lan V. Zhang and
Frederick P. Roth and
Joel S. Bader},
editor = {Trey Ideker and
Vineet Bafna},
title = {Probabilistic Paths for Protein Complex Inference},
booktitle = {Systems Biology and Computational Proteomics, Joint {RECOMB} 2006
Satellite Workshops on Systems Biology and on Computational Proteomics,
San Diego, CA, USA, December 1-3, 2006, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4532},
pages = {14--28},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/978-3-540-73060-6\_2},
doi = {10.1007/978-3-540-73060-6\_2},
timestamp = {Mon, 16 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HuangZRB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KaltenbachBR06,
author = {Hans{-}Michael Kaltenbach and
Sebastian B{\"{o}}cker and
Sven Rahmann},
editor = {Trey Ideker and
Vineet Bafna},
title = {Markov Additive Chains and Applications to Fragment Statistics for
Peptide Mass Fingerprinting},
booktitle = {Systems Biology and Computational Proteomics, Joint {RECOMB} 2006
Satellite Workshops on Systems Biology and on Computational Proteomics,
San Diego, CA, USA, December 1-3, 2006, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4532},
pages = {29--41},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/978-3-540-73060-6\_3},
doi = {10.1007/978-3-540-73060-6\_3},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KaltenbachBR06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KaminskiB06,
author = {Naftali Kaminski and
Ziv Bar{-}Joseph},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {A Patient-Gene Model for Temporal Expression Profiles in Clinical
Studies},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {69--82},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_6},
doi = {10.1007/11732990\_6},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KaminskiB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KececiogluK06,
author = {John D. Kececioglu and
Eagu Kim},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Simple and Fast Inverse Alignment},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {441--455},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_37},
doi = {10.1007/11732990\_37},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KececiogluK06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KoyuturkGS06,
author = {Mehmet Koyut{\"{u}}rk and
Ananth Grama and
Wojciech Szpankowski},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Assessing Significance of Connectivity and Conservation in Protein
Interaction Networks},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {45--59},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_4},
doi = {10.1007/11732990\_4},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KoyuturkGS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LefebvreLBFC06,
author = {C{\'{e}}line Lefebvre and
Wei Keat Lim and
Katia Basso and
Riccardo Dalla Favera and
Andrea Califano},
editor = {Trey Ideker and
Vineet Bafna},
title = {A Context-Specific Network of Protein-DNA and Protein-Protein Interactions
Reveals New Regulatory Motifs in Human {B} Cells},
booktitle = {Systems Biology and Computational Proteomics, Joint {RECOMB} 2006
Satellite Workshops on Systems Biology and on Computational Proteomics,
San Diego, CA, USA, December 1-3, 2006, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4532},
pages = {42--56},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/978-3-540-73060-6\_4},
doi = {10.1007/978-3-540-73060-6\_4},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LefebvreLBFC06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MenchettiPFAR06,
author = {Sauro Menchetti and
Andrea Passerini and
Paolo Frasconi and
Claudia Andreini and
Antonio Rosato},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Improving Prediction of Zinc Binding Sites by Modeling the Linkage
Between Residues Close in Sequence},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {309--320},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_26},
doi = {10.1007/11732990\_26},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MenchettiPFAR06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MesserBVA06,
author = {Philipp W. Messer and
Ralf Bundschuh and
Martin Vingron and
Peter F. Arndt},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Alignment Statistics for Long-Range Correlated Genomic Sequences},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {426--440},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_36},
doi = {10.1007/11732990\_36},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MesserBVA06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PattengaleM06,
author = {Nicholas D. Pattengale and
Bernard M. E. Moret},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {A Sublinear-Time Randomized Approximation Scheme for the Robinson-Foulds
Metric},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {221--230},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_19},
doi = {10.1007/11732990\_19},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PattengaleM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Przytycka06,
author = {Teresa M. Przytycka},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {An Important Connection Between Network Motifs and Parsimony Models},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {321--335},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_27},
doi = {10.1007/11732990\_27},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Przytycka06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/RoyyuruAPSPRB06,
author = {Ajay K. Royyuru and
Gabriela Alexe and
Daniel E. Platt and
Ravi Vijaya Satya and
Laxmi Parida and
Saharon Rosset and
Gyan Bhanot},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Inferring Common Origins from mtDNA},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {246--247},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_21},
doi = {10.1007/11732990\_21},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/RoyyuruAPSPRB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/RuanZ06,
author = {Jianhua Ruan and
Weixiong Zhang},
editor = {Trey Ideker and
Vineet Bafna},
title = {Identification and Evaluation of Functional Modules in Gene Co-expression
Networks},
booktitle = {Systems Biology and Computational Proteomics, Joint {RECOMB} 2006
Satellite Workshops on Systems Biology and on Computational Proteomics,
San Diego, CA, USA, December 1-3, 2006, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4532},
pages = {57--76},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/978-3-540-73060-6\_5},
doi = {10.1007/978-3-540-73060-6\_5},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/RuanZ06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/RuthsTNR06,
author = {Derek A. Ruths and
Jen{-}Te Tseng and
Luay Nakhleh and
Prahlad T. Ram},
editor = {Trey Ideker and
Vineet Bafna},
title = {De Novo Signaling Pathway Predictions Based on Protein-Protein Interaction,
Targeted Therapy and Protein Microarray Analysis},
booktitle = {Systems Biology and Computational Proteomics, Joint {RECOMB} 2006
Satellite Workshops on Systems Biology and on Computational Proteomics,
San Diego, CA, USA, December 1-3, 2006, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4532},
pages = {108--118},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/978-3-540-73060-6\_8},
doi = {10.1007/978-3-540-73060-6\_8},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/RuthsTNR06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Sankoff06,
author = {David Sankoff},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Statistical Evaluation of Genome Rearrangement},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {84--84},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_8},
doi = {10.1007/11732990\_8},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Sankoff06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ScheidS06,
author = {Stefanie Scheid and
Rainer Spang},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Permutation Filtering: {A} Novel Concept for Significance Analysis
of Large-Scale Genomic Data},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {338--347},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_29},
doi = {10.1007/11732990\_29},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ScheidS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SiepelPH06,
author = {Adam C. Siepel and
Katherine S. Pollard and
David Haussler},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {New Methods for Detecting Lineage-Specific Selection},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {190--205},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_17},
doi = {10.1007/11732990\_17},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SiepelPH06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SnirP06,
author = {Sagi Snir and
Lior Pachter},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Phylogenetic Profiling of Insertions and Deletions in Vertebrate Genomes},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {265--280},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_23},
doi = {10.1007/11732990\_23},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SnirP06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SongDGLW06,
author = {Yun S. Song and
Zhihong Ding and
Dan Gusfield and
Charles H. Langley and
Yufeng Wu},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Algorithms to Distinguish the Role of Gene-Conversion from Single-Crossover
Recombination in the Derivation of {SNP} Sequences in Populations},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {231--245},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_20},
doi = {10.1007/11732990\_20},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SongDGLW06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SongL06,
author = {Mingzhou (Joe) Song and
Z. Lewis Liu},
editor = {Trey Ideker and
Vineet Bafna},
title = {A Linear Discrete Dynamic System Model for Temporal Gene Interaction
and Regulatory Network Influence in Response to Bioethanol Conversion
Inhibitor {HMF} for Ethanologenic Yeast},
booktitle = {Systems Biology and Computational Proteomics, Joint {RECOMB} 2006
Satellite Workshops on Systems Biology and on Computational Proteomics,
San Diego, CA, USA, December 1-3, 2006, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4532},
pages = {77--95},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/978-3-540-73060-6\_6},
doi = {10.1007/978-3-540-73060-6\_6},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SongL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SrinivasanNFBM06,
author = {Balaji S. Srinivasan and
Antal F. Novak and
Jason Flannick and
Serafim Batzoglou and
Harley H. McAdams},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Integrated Protein Interaction Networks for 11 Microbes},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {1--14},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_1},
doi = {10.1007/11732990\_1},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SrinivasanNFBM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ThomasTTA06,
author = {Shawna L. Thomas and
Xinyu Tang and
Lydia Tapia and
Nancy M. Amato},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Simulating Protein Motions with Rigidity Analysis},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {394--409},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_33},
doi = {10.1007/11732990\_33},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ThomasTTA06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/VashistKM06,
author = {Akshay Vashist and
Casimir A. Kulikowski and
Ilya B. Muchnik},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Protein Function Annotation Based on Ortholog Clusters Extracted from
Incomplete Genomes Using Combinatorial Optimization},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {99--113},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_10},
doi = {10.1007/11732990\_10},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/VashistKM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WangNBMC06,
author = {Kai Wang and
Ilya Nemenman and
Nilanjana Banerjee and
Adam A. Margolin and
Andrea Califano},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Genome-Wide Discovery of Modulators of Transcriptional Interactions
in Human {B} Lymphocytes},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {348--362},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_30},
doi = {10.1007/11732990\_30},
timestamp = {Fri, 13 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/WangNBMC06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WangRS06,
author = {Ling Wang and
Marco Ramoni and
Paola Sebastiani},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Clustering Short Gene Expression Profiles},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {60--68},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_5},
doi = {10.1007/11732990\_5},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WangRS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Waterman06,
author = {Michael S. Waterman},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Stan Ulam and Computational Biology},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {159--159},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_14},
doi = {10.1007/11732990\_14},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Waterman06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WexlerZZ06,
author = {Ydo Wexler and
Chaya Ben{-}Zaken Zilberstein and
Michal Ziv{-}Ukelson},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {A Study of Accessible Motifs and {RNA} Folding Complexity},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {473--487},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_40},
doi = {10.1007/11732990\_40},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WexlerZZ06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WuMKNT06,
author = {Yin Wu and
Yehia Mechref and
Iveta Klouckova and
Milos V. Novotny and
Haixu Tang},
editor = {Trey Ideker and
Vineet Bafna},
title = {A Computational Approach for the Identification of Site-Specific Protein
Glycosylations Through Ion-Trap Mass Spectrometry},
booktitle = {Systems Biology and Computational Proteomics, Joint {RECOMB} 2006
Satellite Workshops on Systems Biology and on Computational Proteomics,
San Diego, CA, USA, December 1-3, 2006, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4532},
pages = {96--107},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/978-3-540-73060-6\_7},
doi = {10.1007/978-3-540-73060-6\_7},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WuMKNT06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/XieS06,
author = {Wei Xie and
Nikolaos V. Sahinidis},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {A Branch-and-Reduce Algorithm for the Contact Map Overlap Problem},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {516--529},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_43},
doi = {10.1007/11732990\_43},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/XieS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/XuJB06,
author = {Jinbo Xu and
Feng Jiao and
Bonnie Berger},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {A Parameterized Algorithm for Protein Structure Alignment},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {488--499},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_41},
doi = {10.1007/11732990\_41},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/XuJB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/YeFB06,
author = {Xiaoduan Ye and
Alan M. Friedman and
Chris Bailey{-}Kellogg},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Hypergraph Model of Multi-residue Interactions in Proteins: Sequentially-Constrained
Partitioning Algorithms for Optimization of Site-Directed Protein
Recombination},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {15--29},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_2},
doi = {10.1007/11732990\_2},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/YeFB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Zimmer06,
author = {Carl Zimmer},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {An Outsider's View of the Genome},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {425},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_35},
doi = {10.1007/11732990\_35},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Zimmer06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Zubarev06,
author = {Roman A. Zubarev},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Revealing the Proteome Complexity by Mass Spectrometry},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {456--457},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_38},
doi = {10.1007/11732990\_38},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/Zubarev06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/recomb/2005sbrg,
editor = {Eleazar Eskin and
Trey Ideker and
Benjamin J. Raphael and
Christopher T. Workman},
title = {Systems Biology and Regulatory Genomics, Joint Annual {RECOMB} 2005
Satellite Workshops on Systems Biology and on Regulatory Genomics,
San Diego, CA, USA; December 2-4, 2005, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4023},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/978-3-540-48540-7},
doi = {10.1007/978-3-540-48540-7},
isbn = {978-3-540-48293-2},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/2005sbrg.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/recomb/2006,
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990},
doi = {10.1007/11732990},
isbn = {3-540-33295-2},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/2006.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/AlkanKNSZ05,
author = {Can Alkan and
Emre Karako{\c{c}} and
Joseph H. Nadeau and
S{\"{u}}leyman Cenk Sahinalp and
Kaizhong Zhang},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {{RNA-RNA} Interaction Prediction and Antisense {RNA} Target Search},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {152--171},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_12},
doi = {10.1007/11415770\_12},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/AlkanKNSZ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Altshuler05,
author = {David Altshuler},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Human Genome Sequence Variation and the Inherited Basis of Common
Disease},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {601--602},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_45},
doi = {10.1007/11415770\_45},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Altshuler05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BafnaB05,
author = {Vineet Bafna and
Vikas Bansal},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Improved Recombination Lower Bounds for Haplotype Data},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {569--584},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_43},
doi = {10.1007/11415770\_43},
timestamp = {Fri, 09 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/BafnaB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BafnaTZ05,
author = {Vineet Bafna and
Haixu Tang and
Shaojie Zhang},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Consensus Folding of Unaligned {RNA} Sequences Revisited},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {172--187},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_13},
doi = {10.1007/11415770\_13},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BafnaTZ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Baumeister05,
author = {Wolfgang Baumeister},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Mapping Molecular Landscapes Inside Cells},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {281--282},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_21},
doi = {10.1007/11415770\_21},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Baumeister05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BebekBCFNS05,
author = {G{\"{u}}rkan Bebek and
Petra Berenbrink and
Colin Cooper and
Tom Friedetzky and
Joseph H. Nadeau and
S{\"{u}}leyman Cenk Sahinalp},
editor = {Eleazar Eskin and
Trey Ideker and
Benjamin J. Raphael and
Christopher T. Workman},
title = {Improved Duplication Models for Proteome Network Evolution},
booktitle = {Systems Biology and Regulatory Genomics, Joint Annual {RECOMB} 2005
Satellite Workshops on Systems Biology and on Regulatory Genomics,
San Diego, CA, USA; December 2-4, 2005, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4023},
pages = {119--137},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/978-3-540-48540-7\_11},
doi = {10.1007/978-3-540-48540-7\_11},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BebekBCFNS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BergeronMS05,
author = {Anne Bergeron and
Julia Mixtacki and
Jens Stoye},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {On Sorting by Translocations},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {615--629},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_47},
doi = {10.1007/11415770\_47},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/BergeronMS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BernCW05,
author = {Marshall W. Bern and
Jindong Chen and
Hao Chi Wong},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Avoiding Local Optima in Single Particle Reconstruction},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {118--132},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_10},
doi = {10.1007/11415770\_10},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BernCW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BernG05,
author = {Marshall W. Bern and
David Goldberg},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {EigenMS: De Novo Analysis of Peptide Tandem Mass Spectra by Spectral
Graph Partitioning},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {357--372},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_27},
doi = {10.1007/11415770\_27},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BernG05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BursteinUTC05,
author = {David Burstein and
Igor Ulitsky and
Tamir Tuller and
Benny Chor},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Information Theoretic Approaches to Whole Genome Phylogenies},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {283--295},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_22},
doi = {10.1007/11415770\_22},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BursteinUTC05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChenSK05,
author = {Chih{-}Yu Chen and
Von{-}Wun Soo and
Chi{-}Li Kuo},
editor = {Eleazar Eskin and
Trey Ideker and
Benjamin J. Raphael and
Christopher T. Workman},
title = {Application of Expectation Maximization Clustering to Transcription
Factor Binding Positions for cDNA Microarray Analysis},
booktitle = {Systems Biology and Regulatory Genomics, Joint Annual {RECOMB} 2005
Satellite Workshops on Systems Biology and on Regulatory Genomics,
San Diego, CA, USA; December 2-4, 2005, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4023},
pages = {138--149},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/978-3-540-48540-7\_12},
doi = {10.1007/978-3-540-48540-7\_12},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ChenSK05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/CheslerL05,
author = {Elissa J. Chesler and
Michael A. Langston},
editor = {Eleazar Eskin and
Trey Ideker and
Benjamin J. Raphael and
Christopher T. Workman},
title = {Combinatorial Genetic Regulatory Network Analysis Tools for High Throughput
Transcriptomic Data},
booktitle = {Systems Biology and Regulatory Genomics, Joint Annual {RECOMB} 2005
Satellite Workshops on Systems Biology and on Regulatory Genomics,
San Diego, CA, USA; December 2-4, 2005, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4023},
pages = {150--165},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/978-3-540-48540-7\_13},
doi = {10.1007/978-3-540-48540-7\_13},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/CheslerL05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChiaB05,
author = {Nicholas Chia and
Ralf Bundschuh},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {A Practical Approach to Significance Assessment in Alignment with
Gaps},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {474--488},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_36},
doi = {10.1007/11415770\_36},
timestamp = {Wed, 25 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ChiaB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChorT05,
author = {Benny Chor and
Tamir Tuller},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Maximum Likelihood of Evolutionary Trees Is Hard},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {296--310},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_23},
doi = {10.1007/11415770\_23},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ChorT05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Collins05,
author = {James J. Collins},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Engineering Gene Regulatory Networks: {A} Reductionist Approach to
Systems Biology},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {505--505},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_38},
doi = {10.1007/11415770\_38},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Collins05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DeLisi05,
author = {Charles DeLisi},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Discovery and Annotation of Genetic Modules},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {188--188},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_14},
doi = {10.1007/11415770\_14},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DeLisi05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DillKGTLL05,
author = {David L. Dill and
Merrill Knapp and
Pamela Gage and
Carolyn L. Talcott and
Keith Laderoute and
Patrick Lincoln},
editor = {Eleazar Eskin and
Trey Ideker and
Benjamin J. Raphael and
Christopher T. Workman},
title = {The Pathalyzer: {A} Tool for Analysis of Signal Transduction Pathways},
booktitle = {Systems Biology and Regulatory Genomics, Joint Annual {RECOMB} 2005
Satellite Workshops on Systems Biology and on Regulatory Genomics,
San Diego, CA, USA; December 2-4, 2005, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4023},
pages = {11--22},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/978-3-540-48540-7\_2},
doi = {10.1007/978-3-540-48540-7\_2},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DillKGTLL05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DingFG05,
author = {Zhihong Ding and
Vladimir Filkov and
Dan Gusfield},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {A Linear-Time Algorithm for the Perfect Phylogeny Haplotyping {(PPH)}
Problem},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {585--600},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_44},
doi = {10.1007/11415770\_44},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DingFG05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DurandHV05,
author = {Dannie Durand and
Bjarni V. Halld{\'{o}}rsson and
Benjamin Vernot},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {A Hybrid Micro-Macroevolutionary Approach to Gene Tree Reconstruction},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {250--264},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_19},
doi = {10.1007/11415770\_19},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DurandHV05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/FrankTP05,
author = {Ari Frank and
Stephen Tanner and
Pavel A. Pevzner},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Peptide Sequence Tags for Fast Database Search in Mass-Spectrometry},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {326--341},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_25},
doi = {10.1007/11415770\_25},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/FrankTP05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/FreyMRH05,
author = {Brendan J. Frey and
Quaid Morris and
Mark D. Robinson and
Timothy R. Hughes},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Finding Novel Transcripts in High-Resolution Genome-Wide Microarray
Data Using the GenRate Model},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {66--82},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_5},
doi = {10.1007/11415770\_5},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/FreyMRH05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Gat-ViksTRS05,
author = {Irit Gat{-}Viks and
Amos Tanay and
Daniela Raijman and
Ron Shamir},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {The Factor Graph Network Model for Biological Systems},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {31--47},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_3},
doi = {10.1007/11415770\_3},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Gat-ViksTRS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GrossB05,
author = {Samuel S. Gross and
Michael R. Brent},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Using Multiple Alignments to Improve Gene Prediction},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {374--388},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_29},
doi = {10.1007/11415770\_29},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/GrossB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GusfieldB05,
author = {Dan Gusfield and
Vikas Bansal},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {A Fundamental Decomposition Theory for Phylogenetic Networks and Incompatible
Characters},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {217--232},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_17},
doi = {10.1007/11415770\_17},
timestamp = {Fri, 09 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/GusfieldB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HalperinH05,
author = {Eran Halperin and
Elad Hazan},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {{HAPLOFREQ} - Estimating Haplotype Frequencies E.ciently},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {553--568},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_42},
doi = {10.1007/11415770\_42},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HalperinH05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HoonV05,
author = {Michiel J. L. de Hoon and
Dennis Vitkup},
editor = {Eleazar Eskin and
Trey Ideker and
Benjamin J. Raphael and
Christopher T. Workman},
title = {Comparative Systems Biology of the Sporulation Initiation Network
in Prokaryotes},
booktitle = {Systems Biology and Regulatory Genomics, Joint Annual {RECOMB} 2005
Satellite Workshops on Systems Biology and on Regulatory Genomics,
San Diego, CA, USA; December 2-4, 2005, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4023},
pages = {62--69},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/978-3-540-48540-7\_6},
doi = {10.1007/978-3-540-48540-7\_6},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HoonV05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HuangFTN05,
author = {Chien{-}Hung Huang and
Jywe{-}Fei Fang and
Jeffrey J. P. Tsai and
Ka{-}Lok Ng},
editor = {Eleazar Eskin and
Trey Ideker and
Benjamin J. Raphael and
Christopher T. Workman},
title = {Topological Robustness of the Protein-Protein Interaction Networks},
booktitle = {Systems Biology and Regulatory Genomics, Joint Annual {RECOMB} 2005
Satellite Workshops on Systems Biology and on Regulatory Genomics,
San Diego, CA, USA; December 2-4, 2005, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4023},
pages = {166--177},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/978-3-540-48540-7\_14},
doi = {10.1007/978-3-540-48540-7\_14},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HuangFTN05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HusonKLS05,
author = {Daniel H. Huson and
Tobias H. Kl{\"{o}}pper and
Pete J. Lockhart and
Mike A. Steel},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Reconstruction of Reticulate Networks from Gene Trees},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {233--249},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_18},
doi = {10.1007/11415770\_18},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HusonKLS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HuynhJNS05,
author = {Trinh N. D. Huynh and
Jesper Jansson and
Nguyen Bao Nguyen and
Wing{-}Kin Sung},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Constructing a Smallest Refining Galled Phylogenetic Network},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {265--280},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_20},
doi = {10.1007/11415770\_20},
timestamp = {Tue, 17 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HuynhJNS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/JaimovichEMF05,
author = {Ariel Jaimovich and
Gal Elidan and
Hanah Margalit and
Nir Friedman},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Towards an Integrated Protein-Protein Interaction Network},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {14--30},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_2},
doi = {10.1007/11415770\_2},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/JaimovichEMF05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/JonnalagaddaS05,
author = {Sudhakar Jonnalagadda and
Rajagopalan Srinivasan},
editor = {Eleazar Eskin and
Trey Ideker and
Benjamin J. Raphael and
Christopher T. Workman},
title = {A Bayesian Approach for Integrating Transcription Regulation and Gene
Expression: Application to \emph{Saccharomyces Cerevisiae} Cell Cycle
Data},
booktitle = {Systems Biology and Regulatory Genomics, Joint Annual {RECOMB} 2005
Satellite Workshops on Systems Biology and on Regulatory Genomics,
San Diego, CA, USA; December 2-4, 2005, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4023},
pages = {178--187},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/978-3-540-48540-7\_15},
doi = {10.1007/978-3-540-48540-7\_15},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/JonnalagaddaS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KaplanFM05,
author = {Tommy Kaplan and
Nir Friedman and
Hanah Margalit},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Predicting Transcription Factor Binding Sites Using Structural Knowledge},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {522--537},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_40},
doi = {10.1007/11415770\_40},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/KaplanFM05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KimLP05,
author = {Haseong Kim and
Jae K. Lee and
Taesung Park},
editor = {Eleazar Eskin and
Trey Ideker and
Benjamin J. Raphael and
Christopher T. Workman},
title = {Improvement of Computing Times in Boolean Networks Using Chi-square
Tests},
booktitle = {Systems Biology and Regulatory Genomics, Joint Annual {RECOMB} 2005
Satellite Workshops on Systems Biology and on Regulatory Genomics,
San Diego, CA, USA; December 2-4, 2005, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4023},
pages = {70--79},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/978-3-540-48540-7\_7},
doi = {10.1007/978-3-540-48540-7\_7},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KimLP05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KingHSW05,
author = {Jonathan King and
Cammie Haase{-}Pettingell and
Ryan Simkovsky and
Peter Weigele},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Amino Acid Sequence Control of the Folding of the Parallel beta-Helix,
the Simplest beta-Sheet Fold},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {472--473},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_35},
doi = {10.1007/11415770\_35},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KingHSW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KoyuturkGS05,
author = {Mehmet Koyut{\"{u}}rk and
Ananth Grama and
Wojciech Szpankowski},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Pairwise Local Alignment of Protein Interaction Networks Guided by
Models of Evolution},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {48--65},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_4},
doi = {10.1007/11415770\_4},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KoyuturkGS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KulpJ05,
author = {David Kulp and
Manjunatha Jagalur},
editor = {Eleazar Eskin and
Trey Ideker and
Benjamin J. Raphael and
Christopher T. Workman},
title = {Causal Inference of Regulator-Target Pairs by Gene Mapping of Expression
Phenotypes},
booktitle = {Systems Biology and Regulatory Genomics, Joint Annual {RECOMB} 2005
Satellite Workshops on Systems Biology and on Regulatory Genomics,
San Diego, CA, USA; December 2-4, 2005, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4023},
pages = {95--106},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/978-3-540-48540-7\_9},
doi = {10.1007/978-3-540-48540-7\_9},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KulpJ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Lander05,
author = {Eric S. Lander},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Biology as Information},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {373--373},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_28},
doi = {10.1007/11415770\_28},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Lander05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LapidotP05,
author = {Michal Lapidot and
Yitzhak Pilpel},
editor = {Eleazar Eskin and
Trey Ideker and
Benjamin J. Raphael and
Christopher T. Workman},
title = {Characterization of the Effects of {TF} Binding Site Variations on
Gene Expression Towards Predicting the Functional Outcomes of Regulatory
SNPs},
booktitle = {Systems Biology and Regulatory Genomics, Joint Annual {RECOMB} 2005
Satellite Workshops on Systems Biology and on Regulatory Genomics,
San Diego, CA, USA; December 2-4, 2005, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4023},
pages = {51--61},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/978-3-540-48540-7\_5},
doi = {10.1007/978-3-540-48540-7\_5},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LapidotP05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LehrachHW05,
author = {Wolfgang P. Lehrach and
Dirk Husmeier and
Christopher K. I. Williams},
editor = {Eleazar Eskin and
Trey Ideker and
Benjamin J. Raphael and
Christopher T. Workman},
title = {Probabilistic \emph{in Silico} Prediction of Protein-Peptide Interactions},
booktitle = {Systems Biology and Regulatory Genomics, Joint Annual {RECOMB} 2005
Satellite Workshops on Systems Biology and on Regulatory Genomics,
San Diego, CA, USA; December 2-4, 2005, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4023},
pages = {188--197},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/978-3-540-48540-7\_16},
doi = {10.1007/978-3-540-48540-7\_16},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LehrachHW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LindquistFOGSCJ05,
author = {Susan Lindquist and
Ernest Fraenkel and
Tiago Outeiro and
Aaron Gitler and
Julie Su and
Anil Cashikar and
Smitha Jagadish},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Yeast Cells as a Discovery Platform for Neurodegenerative Disease},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {102--102},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_8},
doi = {10.1007/11415770\_8},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LindquistFOGSCJ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LipsonABLY05,
author = {Doron Lipson and
Yonatan Aumann and
Amir Ben{-}Dor and
Nathan Linial and
Zohar Yakhini},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Efficient Calculation of Interval Scores for {DNA} Copy Number Data
Analysis},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {83--100},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_6},
doi = {10.1007/11415770\_6},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LipsonABLY05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LiuCWG05,
author = {Yan Liu and
Jaime G. Carbonell and
Peter Weigele and
Vanathi Gopalakrishnan},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Segmentation Conditional Random Fields (SCRFs): {A} New Approach for
Protein Fold Recognition},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {408--422},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_31},
doi = {10.1007/11415770\_31},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LiuCWG05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ManSP05,
author = {Orna Man and
Joel L. Sussman and
Yitzhak Pilpel},
editor = {Eleazar Eskin and
Trey Ideker and
Benjamin J. Raphael and
Christopher T. Workman},
title = {Examination of the tRNA Adaptation Index as a Predictor of Protein
Expression Levels},
booktitle = {Systems Biology and Regulatory Genomics, Joint Annual {RECOMB} 2005
Satellite Workshops on Systems Biology and on Regulatory Genomics,
San Diego, CA, USA; December 2-4, 2005, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4023},
pages = {107--118},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/978-3-540-48540-7\_10},
doi = {10.1007/978-3-540-48540-7\_10},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ManSP05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MezerBANG05,
author = {Aviv A. Mezer and
Eran Bosis and
Uri Ashery and
Esther Nachliel and
Menachem Gutman},
editor = {Eleazar Eskin and
Trey Ideker and
Benjamin J. Raphael and
Christopher T. Workman},
title = {A Comprehensive Kinetic Model of the Exocytotic Process: Evaluation
of the Reaction Mechanism},
booktitle = {Systems Biology and Regulatory Genomics, Joint Annual {RECOMB} 2005
Satellite Workshops on Systems Biology and on Regulatory Genomics,
San Diego, CA, USA; December 2-4, 2005, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4023},
pages = {249--257},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/978-3-540-48540-7\_21},
doi = {10.1007/978-3-540-48540-7\_21},
timestamp = {Mon, 30 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MezerBANG05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MiddendorfKSFWL05,
author = {Manuel Middendorf and
Anshul Kundaje and
Mihir Shah and
Yoav Freund and
Chris Wiggins and
Christina S. Leslie},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Motif Discovery Through Predictive Modeling of Gene Regulation},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {538--552},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_41},
doi = {10.1007/11415770\_41},
timestamp = {Wed, 17 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MiddendorfKSFWL05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PapatsenkoL05,
author = {Dmitri A. Papatsenko and
Mike Levine},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {A Regulatory Network Controlling Drosophila Development},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {101--101},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_7},
doi = {10.1007/11415770\_7},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PapatsenkoL05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PrzytyckaDSD05,
author = {Teresa M. Przytycka and
George B. Davis and
Nan Song and
Dannie Durand},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Graph Theoretical Insights into Evolution of Multidomain Proteins},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {311--325},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_24},
doi = {10.1007/11415770\_24},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PrzytyckaDSD05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/RasmussenSM05,
author = {Kim R. Rasmussen and
Jens Stoye and
Eugene W. Myers},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Efficient q-Gram Filters for Finding All epsilon-Matches over a Given
Length},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {189--203},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_15},
doi = {10.1007/11415770\_15},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/RasmussenSM05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SankoffM05,
author = {David Sankoff and
Matthew Mazowita},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Stability of Rearrangement Measures in the Comparison of Genome Sequences},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {603--614},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_46},
doi = {10.1007/11415770\_46},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SankoffM05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ScottIKS05,
author = {Jacob Scott and
Trey Ideker and
Richard M. Karp and
Roded Sharan},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction
Networks},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {1--13},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_1},
doi = {10.1007/11415770\_1},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ScottIKS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ShatskySNW05,
author = {Maxim Shatsky and
Alexandra Shulman{-}Peleg and
Ruth Nussinov and
Haim J. Wolfson},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Recognition of Binding Patterns Common to a Set of Protein Structures},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {440--455},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_33},
doi = {10.1007/11415770\_33},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ShatskySNW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SonnenburgRS05,
author = {S{\"{o}}ren Sonnenburg and
Gunnar R{\"{a}}tsch and
Christin Sch{\"{a}}fer},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Learning Interpretable SVMs for Biological Sequence Classification},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {389--407},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_30},
doi = {10.1007/11415770\_30},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SonnenburgRS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SuthramSRSI05,
author = {Silpa Suthram and
Tomer Shlomi and
Eytan Ruppin and
Roded Sharan and
Trey Ideker},
editor = {Eleazar Eskin and
Trey Ideker and
Benjamin J. Raphael and
Christopher T. Workman},
title = {Comparison of Protein-Protein Interaction Confidence Assignment Schemes},
booktitle = {Systems Biology and Regulatory Genomics, Joint Annual {RECOMB} 2005
Satellite Workshops on Systems Biology and on Regulatory Genomics,
San Diego, CA, USA; December 2-4, 2005, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4023},
pages = {39--50},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/978-3-540-48540-7\_4},
doi = {10.1007/978-3-540-48540-7\_4},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SuthramSRSI05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SzeLY05,
author = {Sing{-}Hoi Sze and
Yue Lu and
Qingwu Yang},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {A Polynomial Time Solvable Formulation of Multiple Sequence Alignment},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {204--216},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_16},
doi = {10.1007/11415770\_16},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SzeLY05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SzeZ05,
author = {Sing{-}Hoi Sze and
Xiaoyan Zhao},
editor = {Eleazar Eskin and
Trey Ideker and
Benjamin J. Raphael and
Christopher T. Workman},
title = {Improved Pattern-Driven Algorithms for Motif Finding in {DNA} Sequences},
booktitle = {Systems Biology and Regulatory Genomics, Joint Annual {RECOMB} 2005
Satellite Workshops on Systems Biology and on Regulatory Genomics,
San Diego, CA, USA; December 2-4, 2005, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4023},
pages = {198--211},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/978-3-540-48540-7\_17},
doi = {10.1007/978-3-540-48540-7\_17},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SzeZ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ValouevLLSYZW05,
author = {Anton Valouev and
Lei Li and
Yu{-}Chi Liu and
David C. Schwartz and
Yi Yang and
Yu Zhang and
Michael S. Waterman},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Alignment of Optical Maps},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {489--504},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_37},
doi = {10.1007/11415770\_37},
timestamp = {Wed, 07 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/ValouevLLSYZW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WanC05,
author = {Yunhu Wan and
Ting Chen},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {A Hidden Markov Model Based Scoring Function for Mass Spectrometry
Database Search},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {342--356},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_26},
doi = {10.1007/11415770\_26},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WanC05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WangB05,
author = {Huiquan Wang and
Craig J. Benham},
editor = {Eleazar Eskin and
Trey Ideker and
Benjamin J. Raphael and
Christopher T. Workman},
title = {Annotation of Promoter Regions in Microbial Genomes Based on {DNA}
Structural and Sequence Properties},
booktitle = {Systems Biology and Regulatory Genomics, Joint Annual {RECOMB} 2005
Satellite Workshops on Systems Biology and on Regulatory Genomics,
San Diego, CA, USA; December 2-4, 2005, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4023},
pages = {212--224},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/978-3-540-48540-7\_18},
doi = {10.1007/978-3-540-48540-7\_18},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WangB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WangJH05,
author = {Li{-}San Wang and
Shane T. Jensen and
Sridhar Hannenhalli},
editor = {Eleazar Eskin and
Trey Ideker and
Benjamin J. Raphael and
Christopher T. Workman},
title = {An Interaction-Dependent Model for Transcription Factor Binding},
booktitle = {Systems Biology and Regulatory Genomics, Joint Annual {RECOMB} 2005
Satellite Workshops on Systems Biology and on Regulatory Genomics,
San Diego, CA, USA; December 2-4, 2005, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4023},
pages = {225--234},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/978-3-540-48540-7\_19},
doi = {10.1007/978-3-540-48540-7\_19},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WangJH05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WangZ05,
author = {Guandong Wang and
Weixiong Zhang},
editor = {Eleazar Eskin and
Trey Ideker and
Benjamin J. Raphael and
Christopher T. Workman},
title = {Build a Dictionary, Learn a Grammar, Decipher Stegoscripts, and Discover
Genomic Regulatory Elements},
booktitle = {Systems Biology and Regulatory Genomics, Joint Annual {RECOMB} 2005
Satellite Workshops on Systems Biology and on Regulatory Genomics,
San Diego, CA, USA; December 2-4, 2005, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4023},
pages = {80--94},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/978-3-540-48540-7\_8},
doi = {10.1007/978-3-540-48540-7\_8},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WangZ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WuCCCWHSH05,
author = {Kuen{-}Pin Wu and
Jia{-}Ming Chang and
Jun{-}Bo Chen and
Chi{-}Fon Chang and
Wen{-}Jin Wu and
Tai{-}Huang Huang and
Ting{-}Yi Sung and
Wen{-}Lian Hsu},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {RIBRA-An Error-Tolerant Algorithm for the {NMR} Backbone Assignment
Problem},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {103--117},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_9},
doi = {10.1007/11415770\_9},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WuCCCWHSH05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WuSJC05,
author = {Weihui Wu and
Yongling Song and
Shouguang Jin and
Su{-}Shing Chen},
editor = {Eleazar Eskin and
Trey Ideker and
Benjamin J. Raphael and
Christopher T. Workman},
title = {An Interactive Map of Regulatory Networks of \emph{Pseudomonas aeruginosa}
Genome},
booktitle = {Systems Biology and Regulatory Genomics, Joint Annual {RECOMB} 2005
Satellite Workshops on Systems Biology and on Regulatory Genomics,
San Diego, CA, USA; December 2-4, 2005, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4023},
pages = {1--10},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/978-3-540-48540-7\_1},
doi = {10.1007/978-3-540-48540-7\_1},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WuSJC05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Xu05,
author = {Jinbo Xu},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Rapid Protein Side-Chain Packing via Tree Decomposition},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {423--439},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_32},
doi = {10.1007/11415770\_32},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Xu05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/YanoverH05,
author = {Chen Yanover and
Tomer Hertz},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Predicting Protein-Peptide Binding Affinity by Learning Peptide-Peptide
Distance Functions},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {456--471},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_34},
doi = {10.1007/11415770\_34},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/YanoverH05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/YeangJ05,
author = {Chen{-}Hsiang Yeang and
Tommi S. Jaakkola},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Modeling the Combinatorial Functions of Multiple Transcription Factors},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {506--521},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_39},
doi = {10.1007/11415770\_39},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/YeangJ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhouRWZ05,
author = {Xuefeng Zhou and
Jianhua Ruan and
Guandong Wang and
Weixiong Zhang},
editor = {Eleazar Eskin and
Trey Ideker and
Benjamin J. Raphael and
Christopher T. Workman},
title = {Computational Characterization and Identification of Core Promoters
of MicroRNA Genes in \emph{C. elegans} , \emph{H. sapiens} and \emph{A.
thaliana}},
booktitle = {Systems Biology and Regulatory Genomics, Joint Annual {RECOMB} 2005
Satellite Workshops on Systems Biology and on Regulatory Genomics,
San Diego, CA, USA; December 2-4, 2005, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4023},
pages = {235--248},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/978-3-540-48540-7\_20},
doi = {10.1007/978-3-540-48540-7\_20},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZhouRWZ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZilbersteinZPY05,
author = {Chaya Ben{-}Zaken Zilberstein and
Michal Ziv{-}Ukelson and
Ron Y. Pinter and
Zohar Yakhini},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {A High-Throughput Approach for Associating microRNAs with Their Activity
Conditions},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {133--151},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_11},
doi = {10.1007/11415770\_11},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZilbersteinZPY05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZotenkoGJP05,
author = {Elena Zotenko and
Katia S. Guimar{\~{a}}es and
Raja Jothi and
Teresa M. Przytycka},
editor = {Eleazar Eskin and
Trey Ideker and
Benjamin J. Raphael and
Christopher T. Workman},
title = {Decomposition of Overlapping Protein Complexes: {A} Graph Theoretical
Method for Analyzing Static and Dynamic Protein Associations},
booktitle = {Systems Biology and Regulatory Genomics, Joint Annual {RECOMB} 2005
Satellite Workshops on Systems Biology and on Regulatory Genomics,
San Diego, CA, USA; December 2-4, 2005, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4023},
pages = {23--38},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/978-3-540-48540-7\_3},
doi = {10.1007/978-3-540-48540-7\_3},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZotenkoGJP05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/recomb/2004rrg,
editor = {Eleazar Eskin and
Christopher T. Workman},
title = {Regulatory Genomics, {RECOMB} 2004 International Workshop, {RRG} 2004,
San Diego, CA, USA, March 26-27, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3318},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/b105490},
doi = {10.1007/B105490},
isbn = {3-540-24456-5},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/2004rrg.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/recomb/2005,
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/b135594},
doi = {10.1007/B135594},
isbn = {3-540-25866-3},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/2005.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ArvestadBLS04,
author = {Lars Arvestad and
Ann{-}Charlotte Berglund and
Jens Lagergren and
Bengt Sennblad},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {Gene tree reconstruction and orthology analysis based on an integrated
model for duplications and sequence evolution},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {326--335},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974657},
doi = {10.1145/974614.974657},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ArvestadBLS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Bailey-KelloggCP04,
author = {Chris Bailey{-}Kellogg and
Sheetal Chainraj and
Gopal Pandurangan},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {A random graph approach to {NMR} sequential assignment},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {58--67},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974623},
doi = {10.1145/974614.974623},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Bailey-KelloggCP04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BanER04,
author = {Yih{-}En Andrew Ban and
Herbert Edelsbrunner and
Johannes Rudolph},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {Interface surfaces for protein-protein complexes},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {205--212},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974642},
doi = {10.1145/974614.974642},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BanER04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BattleSK04,
author = {Alexis J. Battle and
Eran Segal and
Daphne Koller},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {Probabilistic discovery of overlapping cellular processes and their
regulation},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {167--176},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974637},
doi = {10.1145/974614.974637},
timestamp = {Thu, 01 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BattleSK04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BeerenwinkelRDHKSL04,
author = {Niko Beerenwinkel and
J{\"{o}}rg Rahnenf{\"{u}}hrer and
Martin D{\"{a}}umer and
Daniel Hoffmann and
Rolf Kaiser and
Joachim Selbig and
Thomas Lengauer},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {Learning multiple evolutionary pathways from cross-sectional data},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {36--44},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974620},
doi = {10.1145/974614.974620},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BeerenwinkelRDHKSL04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Bustamante04,
author = {Carlos Bustamante},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {Recent advances on the manipulation of single biomolecules},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {357},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974661},
doi = {10.1145/974614.974661},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Bustamante04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChatterjiP04,
author = {Sourav Chatterji and
Lior Pachter},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {Multiple organism gene finding by collapsed gibbs sampling},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {187--193},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974639},
doi = {10.1145/974614.974639},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ChatterjiP04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChinLYLRTSJ04,
author = {Francis Y. L. Chin and
Henry C. M. Leung and
Siu{-}Ming Yiu and
Tak Wah Lam and
Roni Rosenfeld and
Wai Wan Tsang and
David K. Smith and
Y. Jiang},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {Finding motifs for insufficient number of sequences with strong binding
to transcription facto},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {125--132},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974631},
doi = {10.1145/974614.974631},
timestamp = {Tue, 04 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ChinLYLRTSJ04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Doolittle04,
author = {Russell F. Doolittle},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {Fifty years of sequence analysis: what have we learned?},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {281},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974651},
doi = {10.1145/974614.974651},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Doolittle04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Erdmann04,
author = {Michael A. Erdmann},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {Protein similarity from knot theory and geometric convolution},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {195--204},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974641},
doi = {10.1145/974614.974641},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Erdmann04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Eskin04,
author = {Eleazar Eskin},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {From profiles to patterns and back again: a branch and bound algorithm
for finding near optimal motif profiles},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {115--124},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974630},
doi = {10.1145/974614.974630},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Eskin04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Farach-ColtonHW04,
author = {Martin Farach{-}Colton and
Yang Huang and
John L. L. Woolford},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {Discovering temporal relations in molecular pathways using protein-protein
interactions},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {150--156},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974635},
doi = {10.1145/974614.974635},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Farach-ColtonHW04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/FilkovS04,
author = {Vladimir Filkov and
Nameeta Y. Shah},
editor = {Eleazar Eskin and
Christopher T. Workman},
title = {Inferring Cis-region Hierarchies from Patterns in Time-Course Gene
Expression Data},
booktitle = {Regulatory Genomics, {RECOMB} 2004 International Workshop, {RRG} 2004,
San Diego, CA, USA, March 26-27, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3318},
pages = {88--97},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-32280-1\_9},
doi = {10.1007/978-3-540-32280-1\_9},
timestamp = {Thu, 16 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/FilkovS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Fire04,
author = {Andrew Fire},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {RNAi, genome ultrastructure, and other unexpected tales from the analysis
of genetic silencing},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {242},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974646},
doi = {10.1145/974614.974646},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Fire04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Gat-ViksTS04,
author = {Irit Gat{-}Viks and
Amos Tanay and
Ron Shamir},
editor = {Eleazar Eskin and
Christopher T. Workman},
title = {Modeling and Analysis of Heterogeneous Regulation in Biological Networks},
booktitle = {Regulatory Genomics, {RECOMB} 2004 International Workshop, {RRG} 2004,
San Diego, CA, USA, March 26-27, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3318},
pages = {98--113},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-32280-1\_10},
doi = {10.1007/978-3-540-32280-1\_10},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Gat-ViksTS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Gorecki04,
author = {Pawel G{\'{o}}recki},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {Reconciliation problems for duplication, loss and horizontal gene
transfer},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {316--325},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974656},
doi = {10.1145/974614.974656},
timestamp = {Tue, 21 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Gorecki04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HallettLT04,
author = {Michael T. Hallett and
Jens Lagergren and
Ali Tofigh},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {Simultaneous identification of duplications and lateral transfers},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {347--356},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974660},
doi = {10.1145/974614.974660},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HallettLT04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HalperinK04,
author = {Eran Halperin and
Richard M. Karp},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {Perfect phylogeny and haplotype assignment},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {10--19},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974617},
doi = {10.1145/974614.974617},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HalperinK04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HeG04,
author = {Xin He and
Michael H. Goldwasser},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {Identifying conserved gene clusters in the presence of orthologous
groups},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {272--280},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974650},
doi = {10.1145/974614.974650},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HeG04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HuanWBSPT04,
author = {Jun Huan and
Wei Wang and
Deepak Bandyopadhyay and
Jack Snoeyink and
Jan F. Prins and
Alexander Tropsha},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {Mining protein family specific residue packing patterns from protein
structure graphs},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {308--315},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974655},
doi = {10.1145/974614.974655},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HuanWBSPT04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Karp04,
author = {Richard M. Karp},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {Algorithms for inferring cis-regulatory structures and protein interaction
networks},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {45},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974621},
doi = {10.1145/974614.974621},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Karp04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KececiogluS04,
author = {John D. Kececioglu and
Dean Starrett},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {Aligning alignments exactly},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {85--96},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974626},
doi = {10.1145/974614.974626},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KececiogluS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KelTVBW04,
author = {Alexander E. Kel and
Yuri Tikunov and
Nico Voss and
J{\"{u}}rgen Borlak and
Edgar Wingender},
editor = {Eleazar Eskin and
Christopher T. Workman},
title = {Application of Kernel Method to Reveal Subtypes of {TF} Binding Motifs},
booktitle = {Regulatory Genomics, {RECOMB} 2004 International Workshop, {RRG} 2004,
San Diego, CA, USA, March 26-27, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3318},
pages = {42--51},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-32280-1\_5},
doi = {10.1007/978-3-540-32280-1\_5},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KelTVBW04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KimmelS04,
author = {Gad Kimmel and
Ron Shamir},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {Maximum likelihood resolution of multi-block genotypes},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {2--9},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974616},
doi = {10.1145/974614.974616},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KimmelS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Krivan04,
author = {William Krivan},
editor = {Eleazar Eskin and
Christopher T. Workman},
title = {Fishing for Proteins in the Pacific Northwest},
booktitle = {Regulatory Genomics, {RECOMB} 2004 International Workshop, {RRG} 2004,
San Diego, CA, USA, March 26-27, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3318},
pages = {22--29},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-32280-1\_3},
doi = {10.1007/978-3-540-32280-1\_3},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Krivan04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LedentR04,
author = {Sabrina Ledent and
St{\'{e}}phane Robin},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {Checking homogeneity of motifs' distribution in heterogenous sequences},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {107--114},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974629},
doi = {10.1145/974614.974629},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LedentR04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LeeGSDRO04,
author = {David A. Lee and
Alastair Grant and
Ian Sillitoe and
Mark Dibley and
Juan Garcia Ranea and
Christine A. Orengo},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {A structural perspective on genome evolution},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {336},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974658},
doi = {10.1145/974614.974658},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LeeGSDRO04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LiJ04,
author = {Jing Li and
Tao Jiang},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {An exact solution for finding minimum recombinant haplotype configurations
on pedigrees with missing data by integer linear programming},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {20--29},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974618},
doi = {10.1145/974614.974618},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LiJ04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LiJ04a,
author = {Haifeng Li and
Tao Jiang},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {A class of edit kernels for SVMs to predict translation initiation
sites in eukaryotic mRNAs},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {262--271},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974649},
doi = {10.1145/974614.974649},
timestamp = {Tue, 15 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/LiJ04a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LilienSAD04,
author = {Ryan H. Lilien and
Brian W. Stevens and
Amy C. Anderson and
Bruce Randall Donald},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {A novel ensemble-based scoring and search algorithm for protein redesign,
and its application to modify the substrate specificity of the gramicidin
synthetase a phenylalanine adenylation enzyme},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {46--57},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974622},
doi = {10.1145/974614.974622},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LilienSAD04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LippertZFMI04,
author = {Ross Lippert and
Xiaoyue Zhao and
Liliana Florea and
Clark M. Mobarry and
Sorin Istrail},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {Finding anchors for genomic sequence comparison},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {233--241},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974645},
doi = {10.1145/974614.974645},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LippertZFMI04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MankeDV04,
author = {Thomas Manke and
Christoph Dieterich and
Martin Vingron},
editor = {Eleazar Eskin and
Christopher T. Workman},
title = {Detecting Functional Modules of Transcription Factor Binding Sites
in the Human Genome},
booktitle = {Regulatory Genomics, {RECOMB} 2004 International Workshop, {RRG} 2004,
San Diego, CA, USA, March 26-27, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3318},
pages = {14--21},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-32280-1\_2},
doi = {10.1007/978-3-540-32280-1\_2},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MankeDV04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/McGinnis04,
author = {William McGinnis},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {Evolutionary change in developmental genetic networks},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {140},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974633},
doi = {10.1145/974614.974633},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/McGinnis04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MenkeSKBC04,
author = {Matthew Menke and
Eben Scanlon and
Jonathan King and
Bonnie Berger and
Lenore Cowen},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {Wrap-and-pack: a new paradigm for beta structural motif recognition
with application to recognizing beta trefoils},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {298--307},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974654},
doi = {10.1145/974614.974654},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MenkeSKBC04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MeyerguzKKE04,
author = {Leonid Meyerguz and
David Kempe and
Jon M. Kleinberg and
Ron Elber},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {The evolutionary capacity of protein structures},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {290--297},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974653},
doi = {10.1145/974614.974653},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MeyerguzKKE04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MiddendorfKWFL04,
author = {Manuel Middendorf and
Anshul Kundaje and
Chris Wiggins and
Yoav Freund and
Christina S. Leslie},
editor = {Eleazar Eskin and
Christopher T. Workman},
title = {Predicting Genetic Regulatory Response Using Classification: Yeast
Stress Response},
booktitle = {Regulatory Genomics, {RECOMB} 2004 International Workshop, {RRG} 2004,
San Diego, CA, USA, March 26-27, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3318},
pages = {1--13},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-32280-1\_1},
doi = {10.1007/978-3-540-32280-1\_1},
timestamp = {Wed, 17 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MiddendorfKWFL04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/NakhlehWL04,
author = {Luay Nakhleh and
Tandy J. Warnow and
C. Randal Linder},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {Reconstructing reticulate evolution in species: theory and practice},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {337--346},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974659},
doi = {10.1145/974614.974659},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/NakhlehWL04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Nickerson04,
author = {Deborah A. Nickerson},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {SNPing in the human genome},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {1},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974615},
doi = {10.1145/974614.974615},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Nickerson04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/NotoC04,
author = {Keith Noto and
Mark Craven},
editor = {Eleazar Eskin and
Christopher T. Workman},
title = {Learning Regulatory Network Models that Represent Regulator States
and Roles},
booktitle = {Regulatory Genomics, {RECOMB} 2004 International Workshop, {RRG} 2004,
San Diego, CA, USA, March 26-27, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3318},
pages = {52--64},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-32280-1\_6},
doi = {10.1007/978-3-540-32280-1\_6},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/NotoC04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Nowak04,
author = {Martin Nowak},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {Somatic evolution of cancer},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {194},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974640},
doi = {10.1145/974614.974640},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Nowak04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PengM04,
author = {Hanchuan Peng and
Eugene W. Myers},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {Comparing \emph{in situ m}RNA expression patterns of \emph{drosophila}
embryos},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {157--166},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974636},
doi = {10.1145/974614.974636},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PengM04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PevznerTT04,
author = {Pavel A. Pevzner and
Haixu Tang and
Glenn Tesler},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {\emph{De novo} repeat classification and fragment assembly},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {213--222},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974643},
doi = {10.1145/974614.974643},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PevznerTT04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PolicritiVMZ04,
author = {Alberto Policriti and
Nicola Vitacolonna and
Michele Morgante and
Andrea Zuccolo},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {Structured motifs search},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {133--139},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974632},
doi = {10.1145/974614.974632},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PolicritiVMZ04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PolouliakhKHN04,
author = {Natalia Polouliakh and
Michiko Konno and
Paul Horton and
Kenta Nakai},
editor = {Eleazar Eskin and
Christopher T. Workman},
title = {Parameter Landscape Analysis for Common Motif Discovery Programs},
booktitle = {Regulatory Genomics, {RECOMB} 2004 International Workshop, {RRG} 2004,
San Diego, CA, USA, March 26-27, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3318},
pages = {79--87},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-32280-1\_8},
doi = {10.1007/978-3-540-32280-1\_8},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PolouliakhKHN04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SankoffT04,
author = {David Sankoff and
Phil Trinh},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {Chromosomal breakpoint re-use in the inference of genome sequence
rearrangement},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {30--35},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974619},
doi = {10.1145/974614.974619},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SankoffT04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SegalS04,
author = {Eran Segal and
Roded Sharan},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {A discriminative model for identifying spatial cis-regulatory modules},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {141--149},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974634},
doi = {10.1145/974614.974634},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SegalS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SharanIKSK04,
author = {Roded Sharan and
Trey Ideker and
Brian P. Kelley and
Ron Shamir and
Richard M. Karp},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {Identification of protein complexes by comparative analysis of yeast
and bacterial protein interaction data},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {282--289},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974652},
doi = {10.1145/974614.974652},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SharanIKSK04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SiddharthanNS04,
author = {Rahul Siddharthan and
Erik van Nimwegen and
Eric D. Siggia},
editor = {Eleazar Eskin and
Christopher T. Workman},
title = {PhyloGibbs: {A} Gibbs Sampler Incorporating Phylogenetic Information},
booktitle = {Regulatory Genomics, {RECOMB} 2004 International Workshop, {RRG} 2004,
San Diego, CA, USA, March 26-27, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3318},
pages = {30--41},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-32280-1\_4},
doi = {10.1007/978-3-540-32280-1\_4},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SiddharthanNS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SiepelH04,
author = {Adam C. Siepel and
David Haussler},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {Computational identification of evolutionarily conserved exons},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {177--186},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974638},
doi = {10.1145/974614.974638},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SiepelH04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SunB04,
author = {Yanni Sun and
Jeremy Buhler},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {Designing multiple simultaneous seeds for {DNA} similarity search},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {76--84},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974625},
doi = {10.1145/974614.974625},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/SunB04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/TangKTSA04,
author = {Xinyu Tang and
Bonnie Kirkpatrick and
Shawna L. Thomas and
Guang Song and
Nancy M. Amato},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {Using motion planning to study {RNA} folding kinetics},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {252--261},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974648},
doi = {10.1145/974614.974648},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/TangKTSA04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WeinbergR04,
author = {Zasha Weinberg and
Walter L. Ruzzo},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {Faster genome annotation of non-coding {RNA} families without loss
of accuracy},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {243--251},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974647},
doi = {10.1145/974614.974647},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WeinbergR04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WexlerYKG04,
author = {Ydo Wexler and
Zohar Yakhini and
Yechezkel Kashi and
Dan Geiger},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {Finding approximate tandem repeats in genomic sequences},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {223--232},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974644},
doi = {10.1145/974614.974644},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WexlerYKG04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WinzelerRZBGMHVHBC04,
author = {Elizabeth A. Winzeler and
Karine G. Le Roch and
Yingyao Zhou and
Peter L. Blair and
Muni Grainger and
J. Kathleen Moch and
J. David Haynes and
Patricia De la Vega and
Anthony A. Holder and
Serge Batalov and
Daniel J. Carucci},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {Systems biology and malaria},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {97},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974627},
doi = {10.1145/974614.974627},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WinzelerRZBGMHVHBC04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WuI04,
author = {Zhijin Wu and
Rafael A. Irizarry},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {Stochastic models inspired by hybridization theory for short oligonucleotide
arrays},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {98--106},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974628},
doi = {10.1145/974614.974628},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WuI04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhaoHS04,
author = {Xiaoyue Zhao and
Haiyan Huang and
Terence P. Speed},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {Finding short {DNA} motifs using permuted markov models},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {68--75},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974624},
doi = {10.1145/974614.974624},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZhaoHS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZilbersteinEY04,
author = {Chaya Ben{-}Zaken Zilberstein and
Eleazar Eskin and
Zohar Yakhini},
editor = {Eleazar Eskin and
Christopher T. Workman},
title = {Using Expression Data to Discover {RNA} and {DNA} Regulatory Sequence
Motifs},
booktitle = {Regulatory Genomics, {RECOMB} 2004 International Workshop, {RRG} 2004,
San Diego, CA, USA, March 26-27, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3318},
pages = {65--78},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-32280-1\_7},
doi = {10.1007/978-3-540-32280-1\_7},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZilbersteinEY04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/recomb/2002snp,
editor = {Sorin Istrail and
Michael S. Waterman and
Andrew G. Clark},
title = {Computational Methods for SNPs and Haplotype Inference, {DIMACS/RECOMB}
Satellite Workshop, Piscataway, NJ, USA, November 21-22, 2002, Revised
Papers},
series = {Lecture Notes in Computer Science},
volume = {2983},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/b96286},
doi = {10.1007/B96286},
isbn = {3-540-21249-3},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/2002snp.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/recomb/2004,
editor = {Philip E. Bourne and
Dan Gusfield},
title = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614},
doi = {10.1145/974614},
isbn = {1-58113-755-9},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/2004.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Akutsu03,
author = {Tatsuya Akutsu},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Efficient extraction of mapping rules of atoms from enzymatic reaction
data},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {1--8},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640076},
doi = {10.1145/640075.640076},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Akutsu03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BafnaE03,
author = {Vineet Bafna and
Nathan Edwards},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {On de novo interpretation of tandem mass spectra for peptide identification},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {9--18},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640077},
doi = {10.1145/640075.640077},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BafnaE03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BafnaHSCI03,
author = {Vineet Bafna and
Bjarni V. Halld{\'{o}}rsson and
Russell Schwartz and
Andrew G. Clark and
Sorin Istrail},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Haplotypes and informative {SNP} selection algorithms: don't block
out information},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {19--27},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640078},
doi = {10.1145/640075.640078},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BafnaHSCI03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BarashEFK03,
author = {Yoseph Barash and
Gal Elidan and
Nir Friedman and
Tommy Kaplan},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Modeling dependencies in protein-DNA binding sites},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {28--37},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640079},
doi = {10.1145/640075.640079},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/BarashEFK03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Bejerano03,
author = {Gill Bejerano},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Efficient exact value computation and applications to biosequence
analysis},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {38--47},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640080},
doi = {10.1145/640075.640080},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Bejerano03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Ben-DorHSSY03,
author = {Amir Ben{-}Dor and
Tzvika Hartman and
Benno Schwikowski and
Roded Sharan and
Zohar Yakhini},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Towards optimally multiplexed applications of universal {DNA} tag
systems},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {48--56},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640081},
doi = {10.1145/640075.640081},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Ben-DorHSSY03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Blanchette03,
author = {Mathieu Blanchette},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {A comparative analysis method for detecting binding sites in coding
regions},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {57--66},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640082},
doi = {10.1145/640075.640082},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Blanchette03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BuhlerKS03,
author = {Jeremy Buhler and
Uri Keich and
Yanni Sun},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Designing seeds for similarity search in genomic {DNA}},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {67--75},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640083},
doi = {10.1145/640075.640083},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/BuhlerKS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChiangMKLE03,
author = {Derek Y. Chiang and
Alan M. Moses and
Manolis Kamvysselis and
Eric S. Lander and
Michael B. Eisen},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Phylogenetically and spatially conserved word pairs associated with
gene expression changes in yeasts},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {84--93},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640085},
doi = {10.1145/640075.640085},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ChiangMKLE03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChorKS03,
author = {Benny Chor and
Amit Khetan and
Sagi Snir},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Maximum likelihood on four taxa phylogenetic trees: analytic solutions},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {76--83},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640084},
doi = {10.1145/640075.640084},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ChorKS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Clark03,
author = {Andrew G. Clark},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Haplotype phase inference},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {94--94},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640086},
doi = {10.1145/640075.640086},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Clark03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DengCS03,
author = {Minghua Deng and
Ting Chen and
Fengzhu Sun},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {An integrated probabilistic model for functional prediction of proteins},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {95--103},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640087},
doi = {10.1145/640075.640087},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DengCS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/FishelsonG03,
author = {Ma{\'{a}}yan Fishelson and
Dan Geiger},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Optimizing exact genetic linkage computations},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {114--121},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640089},
doi = {10.1145/640075.640089},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/FishelsonG03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Furka03,
author = {{\'{A}}pr{\'{a}}d Furka},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Combinatorial synthesis on macroscopic solid support units},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {122--122},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640090},
doi = {10.1145/640075.640090},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Furka03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GionisM03,
author = {Aristides Gionis and
Heikki Mannila},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Finding recurrent sources in sequences},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {123--130},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640091},
doi = {10.1145/640075.640091},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/GionisM03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GreenspanG03,
author = {Gideon Greenspan and
Dan Geiger},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Model-based inference of haplotype block variation},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {131--137},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640092},
doi = {10.1145/640075.640092},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/GreenspanG03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Haussler03,
author = {David Haussler},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Computational analysis of the human and other mammalian genomes},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {138--138},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640093},
doi = {10.1145/640075.640093},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Haussler03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HegerLH03,
author = {Andreas Heger and
Michael Lappe and
Liisa Holm},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Accurate detection of very sparse sequence motifs},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {139--147},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640094},
doi = {10.1145/640075.640094},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HegerLH03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KahngMPRZ03,
author = {Andrew B. Kahng and
Ion I. Mandoiu and
Pavel A. Pevzner and
Sherief Reda and
Alexander Zelikovsky},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Engineering a scalable placement heuristic for {DNA} probe arrays},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {148--156},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640095},
doi = {10.1145/640075.640095},
timestamp = {Wed, 25 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KahngMPRZ03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KamvysselisPBBL03,
author = {Manolis Kamvysselis and
Nick Patterson and
Bruce Birren and
Bonnie Berger and
Eric S. Lander},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Whole-genome comparative annotation and regulatory motif discovery
in multiple yeast species},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {157--16},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640096},
doi = {10.1145/640075.640096},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KamvysselisPBBL03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Karp03,
author = {Eleazar Eskin and
Eran Halperin and
Richard M. Karp},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Large scale reconstruction of haplotypes from genotype data},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {104--113},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640088},
doi = {10.1145/640075.640088},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Karp03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KrishnapuramCH03,
author = {Balaji Krishnapuram and
Lawrence Carin and
Alexander J. Hartemink},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Joint classifier and feature optimization for cancer diagnosis using
gene expression data},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {167--175},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640097},
doi = {10.1145/640075.640097},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KrishnapuramCH03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LangmeadYLWD03,
author = {Christopher James Langmead and
Anthony K. Yan and
Ryan H. Lilien and
Lincong Wang and
Bruce Randall Donald},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Large a polynomial-time nuclear vector replacement algorithm for automated
{NMR} resonance assignments},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {176--187},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640098},
doi = {10.1145/640075.640098},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LangmeadYLWD03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LeshMW03,
author = {Neal Lesh and
Michael Mitzenmacher and
Sue Whitesides},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {A complete and effective move set for simplified protein folding},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {188--195},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640099},
doi = {10.1145/640075.640099},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LeshMW03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Lesk03,
author = {Arthur M. Lesk},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Invited: Prediction of protein function},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {196--196},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640100},
doi = {10.1145/640075.640100},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Lesk03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LiG03,
author = {Wentian Li and
Ivo Grosse},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Gene selection criterion for discriminant microarray data analysis
based on extreme value distributions},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {217--223},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640103},
doi = {10.1145/640075.640103},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LiG03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LiJ03,
author = {Jing Li and
Tao Jiang},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Efficient rule-based haplotyping algorithms for pedigree data},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {197--206},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640101},
doi = {10.1145/640075.640101},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LiJ03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LiKW03,
author = {Lei M. Li and
Jong Hyun Kim and
Michael S. Waterman},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Haplotype reconstruction from {SNP} alignment},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {207--216},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640102},
doi = {10.1145/640075.640102},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LiKW03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/NagarajanY03,
author = {Niranjan Nagarajan and
Golan Yona},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {A multi-expert system for the automatic detection of protein domains
from sequence information},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {224--234},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640104},
doi = {10.1145/640075.640104},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/NagarajanY03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Nusslein-Volhard03,
author = {Christiane N{\"{u}}sslein{-}Volhard},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Invited},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {235--235},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640105},
doi = {10.1145/640075.640105},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Nusslein-Volhard03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Oesterhelt03,
author = {Dieter Oesterhelt},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Biology and bioinformatics of halophilism},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {236--236},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640106},
doi = {10.1145/640075.640106},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Oesterhelt03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PeerB03,
author = {Itsik Pe'er and
Jacques S. Beckmann},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Resolution of haplotypes and haplotype frequencies from {SNP} genotypes
of pooled samples},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {237--246},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640107},
doi = {10.1145/640075.640107},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PeerB03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PevznerT03,
author = {Pavel A. Pevzner and
Glenn Tesler},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Transforming men into mice: the Nadeau-Taylor chromosomal breakage
model revisited},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {247--256},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640108},
doi = {10.1145/640075.640108},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PevznerT03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/RoskinDH03,
author = {Krishna M. Roskin and
Mark Diekhans and
David Haussler},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Scoring two-species local alignments to try to statistically separate
neutrally evolving from selected {DNA} segments},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {257--266},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640109},
doi = {10.1145/640075.640109},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/RoskinDH03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SchwarzerL03,
author = {Fabian Schwarzer and
Itay Lotan},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Approximation of protein structure for fast similarity measures},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {267--276},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640110},
doi = {10.1145/640075.640110},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SchwarzerL03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SiepelH03,
author = {Adam C. Siepel and
David Haussler},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Combining phylogenetic and hidden Markov models in biosequence analysis},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {277--286},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640111},
doi = {10.1145/640075.640111},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SiepelH03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Speed03,
author = {Terence P. Speed},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Low-level analyses of microarray data},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {287--287},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640112},
doi = {10.1145/640075.640112},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Speed03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Stefansson03,
author = {K{\'{a}}ri Stef{\'{a}}nsson},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Invited},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {288--288},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640113},
doi = {10.1145/640075.640113},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Stefansson03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SyedY03,
author = {Umar Syed and
Golan Yona},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Using a mixture of probabilistic decision trees for direct prediction
of protein function},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {289--300},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640114},
doi = {10.1145/640075.640114},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SyedY03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/TanayS03,
author = {Amos Tanay and
Ron Shamir},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Modeling transcription programs: inferring binding site activity and
dose-response model optimization},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {301--310},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640115},
doi = {10.1145/640075.640115},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/TanayS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Trifonov03,
author = {Edward N. Trifonov},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Poetry and prose of the sequences},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {311--311},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640116},
doi = {10.1145/640075.640116},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Trifonov03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/YeangJ03,
author = {Chen{-}Hsiang Yeang and
Tommi S. Jaakkola},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Physical network models and multi-source data integration},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {312--321},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640117},
doi = {10.1145/640075.640117},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/YeangJ03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/YeoB03,
author = {Gene W. Yeo and
Christopher B. Burge},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Maximum entropy modeling of short sequence motifs with applications
to {RNA} splicing signals},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {322--331},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640118},
doi = {10.1145/640075.640118},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/YeoB03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhangSWC03,
author = {Kui Zhang and
Fengzhu Sun and
Michael S. Waterman and
Ting Chen},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Dynamic programming algorithms for haplotype block partitioning: applications
to human chromosome 21 haplotype data},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {332--340},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640119},
doi = {10.1145/640075.640119},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZhangSWC03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/recomb/2003,
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075},
doi = {10.1145/640075},
isbn = {1-58113-635-8},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/2003.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Abagyan02,
author = {Ruben Abagyan},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Computational structural proteomics and virtual ligand screening},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {1},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565197},
doi = {10.1145/565196.565197},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Abagyan02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/AmatoDS02,
author = {Nancy M. Amato and
Ken A. Dill and
Guang Song},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Using motion planning to map protein folding landscapes and analyze
folding kinetics of known native structures},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {2--11},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565198},
doi = {10.1145/565196.565198},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/AmatoDS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ApaydinBGHL02,
author = {Mehmet Serkan Apaydin and
Douglas L. Brutlag and
Carlos Guestrin and
David Hsu and
Jean{-}Claude Latombe},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Stochastic roadmap simulation: an efficient representation and algorithm
for analyzing molecular motion},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {12--21},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565199},
doi = {10.1145/565196.565199},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ApaydinBGHL02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ApostolicoBL02,
author = {Alberto Apostolico and
Mary Ellen Bock and
Stefano Lonardi},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Monotony of surprise and large-scale quest for unusual words},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {22--31},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565200},
doi = {10.1145/565196.565200},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ApostolicoBL02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ArndtBH02,
author = {Peter F. Arndt and
Christopher B. Burge and
Terence Hwa},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {{DNA} sequence evolution with neighbor-dependent mutation},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {32--38},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565201},
doi = {10.1145/565196.565201},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ArndtBH02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Bar-JosephGGJS02,
author = {Ziv Bar{-}Joseph and
Georg K. Gerber and
David K. Gifford and
Tommi S. Jaakkola and
Itamar Simon},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {A new approach to analyzing gene expression time series data},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {39--48},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565202},
doi = {10.1145/565196.565202},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Bar-JosephGGJS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Ben-DorCKY02,
author = {Amir Ben{-}Dor and
Benny Chor and
Richard M. Karp and
Zohar Yakhini},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Discovering local structure in gene expression data: the order-preserving
submatrix problem},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {49--57},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565203},
doi = {10.1145/565196.565203},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Ben-DorCKY02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Ben-DorKSS02,
author = {Amir Ben{-}Dor and
Richard M. Karp and
Benno Schwikowski and
Ron Shamir},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {The restriction scaffold problem},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {58--66},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565204},
doi = {10.1145/565196.565204},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Ben-DorKSS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BerardR02,
author = {S{\`{e}}verine B{\'{e}}rard and
Eric Rivals},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Comparison of minisatellites},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {67--76},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565205},
doi = {10.1145/565196.565205},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BerardR02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BradleyKB02,
author = {Phil Bradley and
Peter S. Kim and
Bonnie Berger},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Trilogy: discovery of sequence-structure patterns across diverse proteins},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {77--88},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565206},
doi = {10.1145/565196.565206},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BradleyKB02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Brivanlou02,
author = {Ali H. Brivanlou},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Microarray analysis of vertebrate embryonic neural induction},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {89--89},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565207},
doi = {10.1145/565196.565207},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Brivanlou02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Buhler02,
author = {Jeremy Buhler},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Provably sensitive Indexing strategies for biosequence similarity
search},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {90--99},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565208},
doi = {10.1145/565196.565208},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/Buhler02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/CapraraL02,
author = {Alberto Caprara and
Giuseppe Lancia},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Structural alignment of large-size proteins via lagrangian relaxation},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {100--108},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565209},
doi = {10.1145/565196.565209},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/CapraraL02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ClarkDA02,
author = {Andrew G. Clark and
Emmanouil T. Dermitzakis and
Stylianos E. Antonarakis},
editor = {Sorin Istrail and
Michael S. Waterman and
Andrew G. Clark},
title = {Trisomic Phase Inference},
booktitle = {Computational Methods for SNPs and Haplotype Inference, {DIMACS/RECOMB}
Satellite Workshop, Piscataway, NJ, USA, November 21-22, 2002, Revised
Papers},
series = {Lecture Notes in Computer Science},
volume = {2983},
pages = {1--8},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/978-3-540-24719-7\_1},
doi = {10.1007/978-3-540-24719-7\_1},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ClarkDA02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/CohenS02,
author = {Barry Cohen and
Steven Skiena},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Designing {RNA} structures: natural and artificial selection},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {109--116},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565210},
doi = {10.1145/565196.565210},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/CohenS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DengMSC02,
author = {Minghua Deng and
Shipra Mehta and
Fengzhu Sun and
Ting Chen},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Inferring domain-domain interactions from protein-protein interactions},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {117--126},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565211},
doi = {10.1145/565196.565211},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DengMSC02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Ding02,
author = {Chris H. Q. Ding},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Analysis of gene expression profiles: class discovery and leaf ordering},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {127--136},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565212},
doi = {10.1145/565196.565212},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Ding02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DrorMRMRY02,
author = {Ron O. Dror and
Jonathan G. Murnick and
Nicola A. Rinaldi and
Voichita D. Marinescu and
Ryan M. Rifkin and
Richard A. Young},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {A bayesian approach to transcript estimation from gene array data:
the {BEAM} technique},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {137--143},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565213},
doi = {10.1145/565196.565213},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DrorMRMRY02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DurandS02,
author = {Dannie Durand and
David Sankoff},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Tests for gene clustering},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {144--154},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565214},
doi = {10.1145/565196.565214},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DurandS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Eichler02,
author = {Evan E. Eichler},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Recent duplication, evolution and assembly of the human genome},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {155--155},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565215},
doi = {10.1145/565196.565215},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Eichler02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/El-MabroukR02,
author = {Nadia El{-}Mabrouk and
Mathieu Raffinot},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Approximate matching of secondary structures},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {156--164},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565216},
doi = {10.1145/565196.565216},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/El-MabroukR02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Garner02,
author = {Harold R. Garner},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Applied computational genomics: polymorphism prediction, data mining
and genomic analysis},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {165},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565217},
doi = {10.1145/565196.565217},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Garner02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Gusfield02,
author = {Dan Gusfield},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Haplotyping as perfect phylogeny: conceptual framework and efficient
solutions},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {166--175},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565218},
doi = {10.1145/565196.565218},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Gusfield02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Gusfield02a,
author = {Dan Gusfield},
editor = {Sorin Istrail and
Michael S. Waterman and
Andrew G. Clark},
title = {An Overview of Combinatorial Methods for Haplotype Inference},
booktitle = {Computational Methods for SNPs and Haplotype Inference, {DIMACS/RECOMB}
Satellite Workshop, Piscataway, NJ, USA, November 21-22, 2002, Revised
Papers},
series = {Lecture Notes in Computer Science},
volume = {2983},
pages = {9--25},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/978-3-540-24719-7\_2},
doi = {10.1007/978-3-540-24719-7\_2},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Gusfield02a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HalldorssonBELYI02,
author = {Bjarni V. Halld{\'{o}}rsson and
Vineet Bafna and
Nathan Edwards and
Ross Lippert and
Shibu Yooseph and
Sorin Istrail},
editor = {Sorin Istrail and
Michael S. Waterman and
Andrew G. Clark},
title = {A Survey of Computational Methods for Determining Haplotypes},
booktitle = {Computational Methods for SNPs and Haplotype Inference, {DIMACS/RECOMB}
Satellite Workshop, Piscataway, NJ, USA, November 21-22, 2002, Revised
Papers},
series = {Lecture Notes in Computer Science},
volume = {2983},
pages = {26--47},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/978-3-540-24719-7\_3},
doi = {10.1007/978-3-540-24719-7\_3},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HalldorssonBELYI02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HalperinHHS02,
author = {Eran Halperin and
Shay Halperin and
Tzvika Hartman and
Ron Shamir},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Handling long targets and errors in sequencing by hybridization},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {176--185},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565219},
doi = {10.1145/565196.565219},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HalperinHHS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HeathPY02,
author = {Samuel A. Heath and
Franco P. Preparata and
Joel Young},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Sequencing by hybridization using direct and reverse cooperating spectra},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {186--193},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565220},
doi = {10.1145/565196.565220},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HeathPY02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Ho02,
author = {David D. Ho},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Lymphocyte turnover in {HIV-1} infection and the role of the thymus
in {SIV} infection},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {194--194},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565221},
doi = {10.1145/565196.565221},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Ho02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KeichP02,
author = {Uri Keich and
Pavel A. Pevzner},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Finding motifs in the twilight zone},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {195--204},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565222},
doi = {10.1145/565196.565222},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KeichP02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LangmeadYMD02,
author = {Christopher James Langmead and
Anthony K. Yan and
C. Robertson McClung and
Bruce Randall Donald},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Phase-independent rhythmic analysis of genome-wide expression patterns},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {205--215},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565223},
doi = {10.1145/565196.565223},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LangmeadYMD02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LiM02,
author = {Jia Li and
Webb Miller},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Significance Of inter-species matches when evolutionary rate varies},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {216--224},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565224},
doi = {10.1145/565196.565224},
timestamp = {Wed, 10 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LiM02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LiaoN02,
author = {Li Liao and
William Stafford Noble},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Combining pairwise sequence similarity and support vector machines
for remote protein homology detection},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {225--232},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565225},
doi = {10.1145/565196.565225},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LiaoN02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MumeyBD02,
author = {Brendan Mumey and
Brian W. Bailey and
Edward A. Dratz},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Revealing protein structures: a new method for mapping antibody epitopes},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {233--240},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565226},
doi = {10.1145/565196.565226},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MumeyBD02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/NiuLKQL02,
author = {Tianhua Niu and
Xin Lu and
Hosung Kang and
Zhaohui S. Qin and
Jun S. Liu},
editor = {Sorin Istrail and
Michael S. Waterman and
Andrew G. Clark},
title = {Haplotype Inference and Its Application in Linkage Disequilibrium
Mapping},
booktitle = {Computational Methods for SNPs and Haplotype Inference, {DIMACS/RECOMB}
Satellite Workshop, Piscataway, NJ, USA, November 21-22, 2002, Revised
Papers},
series = {Lecture Notes in Computer Science},
volume = {2983},
pages = {48--61},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/978-3-540-24719-7\_4},
doi = {10.1007/978-3-540-24719-7\_4},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/NiuLKQL02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/OttH02,
author = {J{\"{u}}rg Ott and
Josephine Hoh},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Set association analysis of {SNP} case-control and microarray data},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {241--245},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565227},
doi = {10.1145/565196.565227},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/OttH02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PachterL02,
author = {Lior Pachter and
Fumei Lam},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Picking alignments from (steiner) trees},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {246--253},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565228},
doi = {10.1145/565196.565228},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PachterL02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/RashG02,
author = {Sam Rash and
Dan Gusfield},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {String barcoding: uncovering optimal virus signatures},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {254--261},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565229},
doi = {10.1145/565196.565229},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/RashG02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Rubin02,
author = {Gerald M. Rubin},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Biological and computational annotation of the Drosophila Genome Sequence},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {262--262},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565230},
doi = {10.1145/565196.565230},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Rubin02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SchwartzCI02,
author = {Russell Schwartz and
Andrew G. Clark and
Sorin Istrail},
editor = {Sorin Istrail and
Michael S. Waterman and
Andrew G. Clark},
title = {Inferring Piecewise Ancestral History from Haploid Sequences},
booktitle = {Computational Methods for SNPs and Haplotype Inference, {DIMACS/RECOMB}
Satellite Workshop, Piscataway, NJ, USA, November 21-22, 2002, Revised
Papers},
series = {Lecture Notes in Computer Science},
volume = {2983},
pages = {62--73},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/978-3-540-24719-7\_5},
doi = {10.1007/978-3-540-24719-7\_5},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SchwartzCI02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SegalBSFK02,
author = {Eran Segal and
Yoseph Barash and
Itamar Simon and
Nir Friedman and
Daphne Koller},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {From promoter sequence to expression: a probabilistic framework},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {263--272},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565231},
doi = {10.1145/565196.565231},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SegalBSFK02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SegalK02,
author = {Eran Segal and
Daphne Koller},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Probabilistic hierarchical clustering for biological data},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {273--280},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565232},
doi = {10.1145/565196.565232},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SegalK02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Siepel02,
author = {Adam C. Siepel},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {An algorithm to enumerate all sorting reversals},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {281--290},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565233},
doi = {10.1145/565196.565233},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Siepel02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Sinha02,
author = {Saurabh Sinha},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Discriminative motifs},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {291--298},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565234},
doi = {10.1145/565196.565234},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Sinha02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/TeodoroPK02,
author = {Miguel L. Teodoro and
George N. Phillips and
Lydia E. Kavraki},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {A dimensionality reduction approach to modeling protein flexibility},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {299--308},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565235},
doi = {10.1145/565196.565235},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/TeodoroPK02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ThompsonC02,
author = {E. A. Thompson and
Nicola H. Chapman},
editor = {Sorin Istrail and
Michael S. Waterman and
Andrew G. Clark},
title = {Haplotype Blocks in Small Populations},
booktitle = {Computational Methods for SNPs and Haplotype Inference, {DIMACS/RECOMB}
Satellite Workshop, Piscataway, NJ, USA, November 21-22, 2002, Revised
Papers},
series = {Lecture Notes in Computer Science},
volume = {2983},
pages = {74--83},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/978-3-540-24719-7\_6},
doi = {10.1007/978-3-540-24719-7\_6},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ThompsonC02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Venter02,
author = {J. Craig Venter},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Sequencing the human genome},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {309--309},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565236},
doi = {10.1145/565196.565236},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Venter02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Vidal02,
author = {Marc Vidal},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Toward a proteome atlas for C. Elegans},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {310--310},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565237},
doi = {10.1145/565196.565237},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Vidal02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WangR02,
author = {Ying Wang and
Bruce Rannala},
editor = {Sorin Istrail and
Michael S. Waterman and
Andrew G. Clark},
title = {Simulating a Coalescent Process with Recombination and Ascertainment},
booktitle = {Computational Methods for SNPs and Haplotype Inference, {DIMACS/RECOMB}
Satellite Workshop, Piscataway, NJ, USA, November 21-22, 2002, Revised
Papers},
series = {Lecture Notes in Computer Science},
volume = {2983},
pages = {84--95},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/978-3-540-24719-7\_7},
doi = {10.1007/978-3-540-24719-7\_7},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WangR02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WildenbergSS02,
author = {Andy Wildenberg and
Steven Skiena and
Pavel Sumazin},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Deconvolving sequence variation in mixed {DNA} populations},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {311--320},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565238},
doi = {10.1145/565196.565238},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WildenbergSS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhangCWQLS02,
author = {Kui Zhang and
Ting Chen and
Michael S. Waterman and
Zhaohui S. Qin and
Jun S. Liu and
Fengzhu Sun},
editor = {Sorin Istrail and
Michael S. Waterman and
Andrew G. Clark},
title = {Dynamic Programming Algorithms for Haplotype Block Partitioning and
Tag {SNP} Selection Using Haplotype Data or Genotype Data},
booktitle = {Computational Methods for SNPs and Haplotype Inference, {DIMACS/RECOMB}
Satellite Workshop, Piscataway, NJ, USA, November 21-22, 2002, Revised
Papers},
series = {Lecture Notes in Computer Science},
volume = {2983},
pages = {96--112},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/978-3-540-24719-7\_8},
doi = {10.1007/978-3-540-24719-7\_8},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZhangCWQLS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhengM02,
author = {Maoxia Zheng and
Mary Sara McPeek},
editor = {Sorin Istrail and
Michael S. Waterman and
Andrew G. Clark},
title = {Parametric Bootstrap for Assessment of Goodness of Fit of Models for
Block Haplotype Structure},
booktitle = {Computational Methods for SNPs and Haplotype Inference, {DIMACS/RECOMB}
Satellite Workshop, Piscataway, NJ, USA, November 21-22, 2002, Revised
Papers},
series = {Lecture Notes in Computer Science},
volume = {2983},
pages = {113--123},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/978-3-540-24719-7\_9},
doi = {10.1007/978-3-540-24719-7\_9},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZhengM02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZienFZL02,
author = {Alexander Zien and
Juliane Fluck and
Ralf Zimmer and
Thomas Lengauer},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Microarrays: how many do you need?},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {321--330},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565239},
doi = {10.1145/565196.565239},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZienFZL02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZollnerP02,
author = {Sebastian Z{\"{o}}llner and
Jonathan K. Pritchard},
editor = {Sorin Istrail and
Michael S. Waterman and
Andrew G. Clark},
title = {A Coalescent-Based Approach for Complex Disease Mapping},
booktitle = {Computational Methods for SNPs and Haplotype Inference, {DIMACS/RECOMB}
Satellite Workshop, Piscataway, NJ, USA, November 21-22, 2002, Revised
Papers},
series = {Lecture Notes in Computer Science},
volume = {2983},
pages = {124--130},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/978-3-540-24719-7\_10},
doi = {10.1007/978-3-540-24719-7\_10},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZollnerP02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/recomb/2002,
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196},
doi = {10.1145/565196},
isbn = {1-58113-498-3},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/2002.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Adams01,
author = {Mark Adams},
editor = {Thomas Lengauer},
title = {The sequence of the human genome (abstract only)},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {1},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369143},
doi = {10.1145/369133.369143},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Adams01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ArslanEP01,
author = {Abdullah N. Arslan and
{\"{O}}mer Egecioglu and
Pavel A. Pevzner},
editor = {Thomas Lengauer},
title = {A new approach to sequence comparison: normalized sequence alignment},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {2--11},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369146},
doi = {10.1145/369133.369146},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ArslanEP01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BarashF01,
author = {Yoseph Barash and
Nir Friedman},
editor = {Thomas Lengauer},
title = {Context-specific Bayesian clustering for gene expression data},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {12--21},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369150},
doi = {10.1145/369133.369150},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/BarashF01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BeigelAKAF01,
author = {Richard Beigel and
Noga Alon and
Simon Kasif and
Mehmet Serkan Apaydin and
Lance Fortnow},
editor = {Thomas Lengauer},
title = {An optimal procedure for gap closing in whole genome shotgun sequencing},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {22--30},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369152},
doi = {10.1145/369133.369152},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BeigelAKAF01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Ben-DorFY01,
author = {Amir Ben{-}Dor and
Nir Friedman and
Zohar Yakhini},
editor = {Thomas Lengauer},
title = {Class discovery in gene expression data},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {31--38},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369167},
doi = {10.1145/369133.369167},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/Ben-DorFY01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BiluL01,
author = {Yonatan Bilu and
Michal Linial},
editor = {Thomas Lengauer},
title = {On the predictive power of sequence similarity in yeast},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {39--48},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369168},
doi = {10.1145/369133.369168},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BiluL01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Blanchette01,
author = {Mathieu Blanchette},
editor = {Thomas Lengauer},
title = {Algorithms for phylogenetic footprinting},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {49--58},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369170},
doi = {10.1145/369133.369170},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Blanchette01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BradleyCMKB01,
author = {Phil Bradley and
Lenore Cowen and
Matthew Menke and
Jonathan King and
Bonnie Berger},
editor = {Thomas Lengauer},
title = {Predicting the beta-helix fold from protein sequence data},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {59--67},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369171},
doi = {10.1145/369133.369171},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BradleyCMKB01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Brent01,
author = {Roger Brent},
editor = {Thomas Lengauer},
title = {Information processing by cells and biologists (abstract only)},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {68},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369175},
doi = {10.1145/369133.369175},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Brent01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BuhlerT01,
author = {Jeremy Buhler and
Martin Tompa},
editor = {Thomas Lengauer},
title = {Finding motifs using random projections},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {69--76},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369172},
doi = {10.1145/369133.369172},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/BuhlerT01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Bundschuh01,
author = {Ralf Bundschuh},
editor = {Thomas Lengauer},
title = {Rapid significance estimation in local sequence alignment with gaps},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {77--85},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369173},
doi = {10.1145/369133.369173},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Bundschuh01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BussemakerLS01,
author = {Harmen J. Bussemaker and
Hao Li and
Eric D. Siggia},
editor = {Thomas Lengauer},
title = {Regulatory element detection using correlation with expression (abstract
only)},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {86},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369174},
doi = {10.1145/369133.369174},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BussemakerLS01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Chen01,
author = {Ting Chen},
editor = {Thomas Lengauer},
title = {Gene-finding via tandem mass spectrometry},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {87--94},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369176},
doi = {10.1145/369133.369176},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Chen01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChenJC01,
author = {Ting Chen and
Jacob D. Jaffe and
George M. Church},
editor = {Thomas Lengauer},
title = {Algorithms for identifying protein cross-links via tandem mass spectrometry},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {95--102},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369177},
doi = {10.1145/369133.369177},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ChenJC01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Church01,
author = {George M. Church},
editor = {Thomas Lengauer},
title = {Hunger for new technologies, metrics, and spatiotemporal models in
functional genomic (abstract only)},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {103},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369179},
doi = {10.1145/369133.369179},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Church01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Csuros01,
author = {Mikl{\'{o}}s Cs{\"{u}}r{\"{o}}s},
editor = {Thomas Lengauer},
title = {Fast recovery of evolutionary trees with thousands of nodes},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {104--113},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369178},
doi = {10.1145/369133.369178},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Csuros01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/EfratHKSW01,
author = {Alon Efrat and
Frank Hoffmann and
Klaus Kriegel and
Christof Schultz and
Carola Wenk},
editor = {Thomas Lengauer},
title = {Geometric algorithms for the analysis of 2D-electrophoresis gels},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {114--123},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369181},
doi = {10.1145/369133.369181},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/EfratHKSW01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/FilkovSZ01,
author = {Vladimir Filkov and
Steven Skiena and
Jizu Zhi},
editor = {Thomas Lengauer},
title = {Analysis techniques for microarray time-series data},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {124--131},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369183},
doi = {10.1145/369133.369183},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/FilkovSZ01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/FriedmanNPP01,
author = {Nir Friedman and
Matan Ninio and
Itsik Pe'er and
Tal Pupko},
editor = {Thomas Lengauer},
title = {A structural {EM} algorithm for phylogenetic inference},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {132--140},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369182},
doi = {10.1145/369133.369182},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/FriedmanNPP01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/FriezeH01,
author = {Alan M. Frieze and
Bjarni V. Halld{\'{o}}rsson},
editor = {Thomas Lengauer},
title = {Optimal sequencing by hybridization in rounds},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {141--148},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369187},
doi = {10.1145/369133.369187},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/FriezeH01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HallettL01,
author = {Michael T. Hallett and
Jens Lagergren},
editor = {Thomas Lengauer},
title = {Efficient algorithms for lateral gene transfer problems},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {149--156},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369188},
doi = {10.1145/369133.369188},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HallettL01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HusonRM01,
author = {Daniel H. Huson and
Knut Reinert and
Eugene W. Myers},
editor = {Thomas Lengauer},
title = {The greedy path-merging algorithm for sequence assembly},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {157--163},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369190},
doi = {10.1145/369133.369190},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HusonRM01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KececiogluJ01,
author = {John D. Kececioglu and
Jun Ju},
editor = {Thomas Lengauer},
title = {Separtating repeats in {DNA} sequence assembly},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {176--183},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369192},
doi = {10.1145/369133.369192},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KececiogluJ01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KohlbacherBMHBL01,
author = {Oliver Kohlbacher and
Andreas Burchardt and
Andreas Moll and
Andreas Hildebrandt and
Peter Bayer and
Hans{-}Peter Lenhof},
editor = {Thomas Lengauer},
title = {A NMR-spectra-based scoring function for protein docking},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {184--192},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369194},
doi = {10.1145/369133.369194},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KohlbacherBMHBL01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LanciaCWI01,
author = {Giuseppe Lancia and
Robert D. Carr and
Brian Walenz and
Sorin Istrail},
editor = {Thomas Lengauer},
title = {101 optimal {PDB} structure alignments: a branch-and-cut algorithm
for the maximum contact map overlap problem},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {193--202},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369199},
doi = {10.1145/369133.369199},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LanciaCWI01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Lang01,
author = {B. Franz Lang},
editor = {Thomas Lengauer},
title = {Comparative analysis of organelle genomes, a biologist's view of computational
challenges (abstract only)},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {203},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369201},
doi = {10.1145/369133.369201},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Lang01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LangmeadD01,
author = {Christopher James Langmead and
Bruce Randall Donald},
editor = {Thomas Lengauer},
title = {Extracting structural information using time-frequency analysis of
protein {NMR} data},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {164--175},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369191},
doi = {10.1145/369133.369191},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LangmeadD01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Li01,
author = {Wentian Li},
editor = {Thomas Lengauer},
title = {{DNA} segmentation as a model selection process},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {204--210},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369202},
doi = {10.1145/369133.369202},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Li01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LinMZ01,
author = {Guohui Lin and
Bin Ma and
Kaizhong Zhang},
editor = {Thomas Lengauer},
title = {Edit distance between two {RNA} structures},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {211--220},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369214},
doi = {10.1145/369133.369214},
timestamp = {Mon, 13 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/LinMZ01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Lindpaintner01,
author = {Klaus Lindpaintner},
editor = {Thomas Lengauer},
title = {Genetics and genemoics: impact on drug discovery and development},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {221--222},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369216},
doi = {10.1145/369133.369216},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Lindpaintner01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Martin01,
author = {Yvonne C. Martin},
editor = {Thomas Lengauer},
title = {The role of computational chemistry in translating genomic information
into bioactive small molecules (abstract only)},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {223},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369217},
doi = {10.1145/369133.369217},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Martin01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Myers01,
author = {Gene Myers},
editor = {Thomas Lengauer},
title = {Comparing sequence scaffolds},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {224--230},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369218},
doi = {10.1145/369133.369218},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Myers01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/NavarroR01,
author = {Gonzalo Navarro and
Mathieu Raffinot},
editor = {Thomas Lengauer},
title = {Fast and simple character classes and bounded gaps pattern matching,
with application to protein searching},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {231--240},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369220},
doi = {10.1145/369133.369220},
timestamp = {Wed, 28 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/NavarroR01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PachterAC01,
author = {Lior Pachter and
Marina Alexandersson and
Simon Cawley},
editor = {Thomas Lengauer},
title = {Applications of generalized pair hidden Markov models to alignment
and gene finding problems},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {241--248},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369227},
doi = {10.1145/369133.369227},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PachterAC01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PavlidisWCG01,
author = {Paul Pavlidis and
Jason Weston and
Jinsong Cai and
William Noble Grundy},
editor = {Thomas Lengauer},
title = {Gene functional classification from heterogeneous data},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {249--255},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369228},
doi = {10.1145/369133.369228},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PavlidisWCG01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PevznerTW01,
author = {Pavel A. Pevzner and
Haixu Tang and
Michael S. Waterman},
editor = {Thomas Lengauer},
title = {A new approach to fragment assembly in {DNA} sequencing},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {256--267},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369230},
doi = {10.1145/369133.369230},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/PevznerTW01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Ptashne01,
author = {Mark Ptashne},
editor = {Thomas Lengauer},
title = {Imposing specificity by regulated localization (abstract only)},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {268},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369231},
doi = {10.1145/369133.369231},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Ptashne01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ShamirT01,
author = {Ron Shamir and
Dekel Tsur},
editor = {Thomas Lengauer},
title = {Large scale sequencing by hybridization},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {269--277},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369233},
doi = {10.1145/369133.369233},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ShamirT01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Sharp01,
author = {Phillip A. Sharp},
editor = {Thomas Lengauer},
title = {{RNA} biology and the genome (abstract only)},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {278},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369235},
doi = {10.1145/369133.369235},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Sharp01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SinghK01,
author = {Mona Singh and
Peter S. Kim},
editor = {Thomas Lengauer},
title = {Towards predicting coiled-coil protein interactions},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {279--286},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369238},
doi = {10.1145/369133.369238},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SinghK01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SongA01,
author = {Guang Song and
Nancy M. Amato},
editor = {Thomas Lengauer},
title = {Using motion planning to study protein folding pathways},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {287--296},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369239},
doi = {10.1145/369133.369239},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SongA01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/TangWY01,
author = {Mengxiang Tang and
Michael S. Waterman and
Shibu Yooseph},
editor = {Thomas Lengauer},
title = {Zinc finger gene clusters and tandem gene duplication},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {297--304},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369241},
doi = {10.1145/369133.369241},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/TangWY01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ThijsMLRMRM01,
author = {Gert Thijs and
Kathleen Marchal and
Magali Lescot and
Stephane Rombauts and
Bart De Moor and
Pierre Rouz{\'{e}} and
Yves Moreau},
editor = {Thomas Lengauer},
title = {A Gibbs sampling method to detect over-represented motifs in the upstream
regions of co-expressed genes},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {305--312},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369253},
doi = {10.1145/369133.369253},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ThijsMLRMRM01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Wilm01,
author = {Matthias Wilm},
editor = {Thomas Lengauer},
title = {Creating the backbone for the virtual cell: cell mapping projects
on the run (abstract only)},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {313},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.374565},
doi = {10.1145/369133.374565},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Wilm01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/recomb/2001,
editor = {Thomas Lengauer},
title = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133},
doi = {10.1145/369133},
isbn = {1-58113-353-7},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/2001.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/AkutsuAS00,
author = {Tatsuya Akutsu and
Hiroki Arimura and
Shinichi Shimozono},
editor = {Ron Shamir and
Satoru Miyano and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {On approximation algorithms for local multiple alignment},
booktitle = {Proceedings of the Fourth Annual International Conference on Computational
Molecular Biology, {RECOMB} 2000, Tokyo, Japan, April 8-11, 2000},
pages = {1--7},
publisher = {{ACM}},
year = {2000},
url = {https://doi.org/10.1145/332306.332311},
doi = {10.1145/332306.332311},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/AkutsuAS00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/AkutsuMK00,
author = {Tatsuya Akutsu and
Satoru Miyano and
Satoru Kuhara},
editor = {Ron Shamir and
Satoru Miyano and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Algorithms for identifying Boolean networks and related biological
networks based on matrix multiplication and fingerprint function},
booktitle = {Proceedings of the Fourth Annual International Conference on Computational
Molecular Biology, {RECOMB} 2000, Tokyo, Japan, April 8-11, 2000},
pages = {8--14},
publisher = {{ACM}},
year = {2000},
url = {https://doi.org/10.1145/332306.332317},
doi = {10.1145/332306.332317},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/AkutsuMK00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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