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@inproceedings{DBLP:conf/mlcb/AlzaidDM23,
  author       = {Ethar Alzaid and
                  Muhammad Dawood and
                  Fayyaz Minhas},
  editor       = {David A. Knowles and
                  Sara Mostafavi},
  title        = {A Transductive Approach to Survival Ranking for Cancer Risk Stratification},
  booktitle    = {Machine Learning in Computational Biology, November 30 - December
                  1, 2023, Seattle, WA, {USA}},
  series       = {Proceedings of Machine Learning Research},
  volume       = {240},
  pages        = {101--109},
  publisher    = {{PMLR}},
  year         = {2023},
  url          = {https://proceedings.mlr.press/v240/alzaid24a.html},
  timestamp    = {Mon, 13 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mlcb/AlzaidDM23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mlcb/BajwaRKSI23,
  author       = {Ayesha Bajwa and
                  Ruchir Rastogi and
                  Pooja Kathail and
                  Richard W. Shuai and
                  Nilah Ioannidis},
  editor       = {David A. Knowles and
                  Sara Mostafavi},
  title        = {Characterizing uncertainty in predictions of genomic sequence-to-activity
                  models},
  booktitle    = {Machine Learning in Computational Biology, November 30 - December
                  1, 2023, Seattle, WA, {USA}},
  series       = {Proceedings of Machine Learning Research},
  volume       = {240},
  pages        = {279--297},
  publisher    = {{PMLR}},
  year         = {2023},
  url          = {https://proceedings.mlr.press/v240/bajwa24a.html},
  timestamp    = {Mon, 13 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mlcb/BajwaRKSI23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mlcb/HongDH23,
  author       = {Juneki Hong and
                  Dezhong Deng and
                  David A. Hendrix},
  editor       = {David A. Knowles and
                  Sara Mostafavi},
  title        = {Improving transformer secondary structure predictions with secondary
                  structure "fixing" task},
  booktitle    = {Machine Learning in Computational Biology, November 30 - December
                  1, 2023, Seattle, WA, {USA}},
  series       = {Proceedings of Machine Learning Research},
  volume       = {240},
  pages        = {267--278},
  publisher    = {{PMLR}},
  year         = {2023},
  url          = {https://proceedings.mlr.press/v240/hong24a.html},
  timestamp    = {Mon, 13 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mlcb/HongDH23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mlcb/IsaevK23,
  author       = {Keren Isaev and
                  David A. Knowles},
  editor       = {David A. Knowles and
                  Sara Mostafavi},
  title        = {Investigating {RNA} splicing as a source of cellular diversity using
                  a binomial mixture model},
  booktitle    = {Machine Learning in Computational Biology, November 30 - December
                  1, 2023, Seattle, WA, {USA}},
  series       = {Proceedings of Machine Learning Research},
  volume       = {240},
  pages        = {163--175},
  publisher    = {{PMLR}},
  year         = {2023},
  url          = {https://proceedings.mlr.press/v240/isaev24a.html},
  timestamp    = {Mon, 13 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mlcb/IsaevK23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mlcb/KenariAL23,
  author       = {Neda Shokraneh Kenari and
                  Megan Andrews and
                  Max W. Libbrecht},
  editor       = {David A. Knowles and
                  Sara Mostafavi},
  title        = {Model-based imputation enables improved resolution for identifying
                  differential chromatin contacts in single-cell Hi-C data},
  booktitle    = {Machine Learning in Computational Biology, November 30 - December
                  1, 2023, Seattle, WA, {USA}},
  series       = {Proceedings of Machine Learning Research},
  volume       = {240},
  pages        = {176--193},
  publisher    = {{PMLR}},
  year         = {2023},
  url          = {https://proceedings.mlr.press/v240/shokraneh-kenari24a.html},
  timestamp    = {Mon, 13 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mlcb/KenariAL23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mlcb/LiuK23,
  author       = {Renming Liu and
                  Arjun Krishnan},
  editor       = {David A. Knowles and
                  Sara Mostafavi},
  title        = {Open Biomedical Network Benchmark: {A} Python Toolkit for Benchmarking
                  Datasets with Biomedical Networks},
  booktitle    = {Machine Learning in Computational Biology, November 30 - December
                  1, 2023, Seattle, WA, {USA}},
  series       = {Proceedings of Machine Learning Research},
  volume       = {240},
  pages        = {23--59},
  publisher    = {{PMLR}},
  year         = {2023},
  url          = {https://proceedings.mlr.press/v240/liu24a.html},
  timestamp    = {Mon, 13 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mlcb/LiuK23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mlcb/MajhaS023,
  author       = {Arushi G. K. Majha and
                  Ian Stott and
                  Andreas Bender},
  editor       = {David A. Knowles and
                  Sara Mostafavi},
  title        = {On Modelability and Generalizability: Are Machine Learning Models
                  for Drug Synergy Exploiting Artefacts and Biases in Available Data?},
  booktitle    = {Machine Learning in Computational Biology, November 30 - December
                  1, 2023, Seattle, WA, {USA}},
  series       = {Proceedings of Machine Learning Research},
  volume       = {240},
  pages        = {123--134},
  publisher    = {{PMLR}},
  year         = {2023},
  url          = {https://proceedings.mlr.press/v240/majha24a.html},
  timestamp    = {Mon, 13 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mlcb/MajhaS023.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mlcb/MartensY23,
  author       = {Kaspar M{\"{a}}rtens and
                  Christopher Yau},
  editor       = {David A. Knowles and
                  Sara Mostafavi},
  title        = {Disentangling shared and private latent factors in multimodal Variational
                  Autoencoders},
  booktitle    = {Machine Learning in Computational Biology, November 30 - December
                  1, 2023, Seattle, WA, {USA}},
  series       = {Proceedings of Machine Learning Research},
  volume       = {240},
  pages        = {60--75},
  publisher    = {{PMLR}},
  year         = {2023},
  url          = {https://proceedings.mlr.press/v240/martens24a.html},
  timestamp    = {Mon, 13 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mlcb/MartensY23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mlcb/NathansenKRNB23,
  author       = {Andrea Nathansen and
                  Kevin Klein and
                  Bernhard Y. Renard and
                  Melania Nowicka and
                  Jakub M. Bartoszewicz},
  editor       = {David A. Knowles and
                  Sara Mostafavi},
  title        = {Evaluating Tuning Strategies for Sequence Generation with Protein
                  Language Models},
  booktitle    = {Machine Learning in Computational Biology, November 30 - December
                  1, 2023, Seattle, WA, {USA}},
  series       = {Proceedings of Machine Learning Research},
  volume       = {240},
  pages        = {76--89},
  publisher    = {{PMLR}},
  year         = {2023},
  url          = {https://proceedings.mlr.press/v240/nathansen24a.html},
  timestamp    = {Mon, 13 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mlcb/NathansenKRNB23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mlcb/RobsonI23,
  author       = {Eyes S. Robson and
                  Nilah Ioannidis},
  editor       = {David A. Knowles and
                  Sara Mostafavi},
  title        = {GUANinE v1.0: Benchmark Datasets for Genomic {AI} Sequence-to-Function
                  Models},
  booktitle    = {Machine Learning in Computational Biology, November 30 - December
                  1, 2023, Seattle, WA, {USA}},
  series       = {Proceedings of Machine Learning Research},
  volume       = {240},
  pages        = {250--266},
  publisher    = {{PMLR}},
  year         = {2023},
  url          = {https://proceedings.mlr.press/v240/robson24a.html},
  timestamp    = {Mon, 13 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mlcb/RobsonI23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mlcb/SimsC23,
  author       = {Zachary S. Sims and
                  Young Hwan Chang},
  editor       = {David A. Knowles and
                  Sara Mostafavi},
  title        = {A Masked Image Modeling Approach to CyCIF Panel Reduction and Marker
                  Imputation},
  booktitle    = {Machine Learning in Computational Biology, November 30 - December
                  1, 2023, Seattle, WA, {USA}},
  series       = {Proceedings of Machine Learning Research},
  volume       = {240},
  pages        = {1--9},
  publisher    = {{PMLR}},
  year         = {2023},
  url          = {https://proceedings.mlr.press/v240/sims24a.html},
  timestamp    = {Mon, 13 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mlcb/SimsC23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mlcb/SzatkownikFCYJ23,
  author       = {Antoine Szatkownik and
                  Cyril Furtlehner and
                  Guillaume Charpiat and
                  Burak Yelmen and
                  Flora Jay},
  editor       = {David A. Knowles and
                  Sara Mostafavi},
  title        = {Towards creating longer genetic sequences with GANs: Generation in
                  principal component space},
  booktitle    = {Machine Learning in Computational Biology, November 30 - December
                  1, 2023, Seattle, WA, {USA}},
  series       = {Proceedings of Machine Learning Research},
  volume       = {240},
  pages        = {110--122},
  publisher    = {{PMLR}},
  year         = {2023},
  url          = {https://proceedings.mlr.press/v240/szatkownik24a.html},
  timestamp    = {Sun, 04 Aug 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mlcb/SzatkownikFCYJ23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mlcb/TuHWKRL23,
  author       = {Xinming Tu and
                  Jan{-}Christian H{\"{u}}tter and
                  Zitong Jerry Wang and
                  Takamasa Kudo and
                  Aviv Regev and
                  Romain Lopez},
  editor       = {David A. Knowles and
                  Sara Mostafavi},
  title        = {A Supervised Contrastive Framework for Learning Disentangled Representations
                  of Cellular Perturbation Data},
  booktitle    = {Machine Learning in Computational Biology, November 30 - December
                  1, 2023, Seattle, WA, {USA}},
  series       = {Proceedings of Machine Learning Research},
  volume       = {240},
  pages        = {90--100},
  publisher    = {{PMLR}},
  year         = {2023},
  url          = {https://proceedings.mlr.press/v240/tu24a.html},
  timestamp    = {Mon, 13 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mlcb/TuHWKRL23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mlcb/VisaniGPN23,
  author       = {Gian Marco Visani and
                  William Galvin and
                  Michael N. Pun and
                  Armita Nourmohammad},
  editor       = {David A. Knowles and
                  Sara Mostafavi},
  title        = {H-Packer: Holographic Rotationally Equivariant Convolutional Neural
                  Network for Protein Side-Chain Packing},
  booktitle    = {Machine Learning in Computational Biology, November 30 - December
                  1, 2023, Seattle, WA, {USA}},
  series       = {Proceedings of Machine Learning Research},
  volume       = {240},
  pages        = {230--249},
  publisher    = {{PMLR}},
  year         = {2023},
  url          = {https://proceedings.mlr.press/v240/visani24a.html},
  timestamp    = {Mon, 13 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mlcb/VisaniGPN23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mlcb/WuBLBLH23,
  author       = {You Wu and
                  Omid Bazgir and
                  Yongju Lee and
                  Tommaso Biancalani and
                  James Lu and
                  Ehsan Hajiramezanali},
  editor       = {David A. Knowles and
                  Sara Mostafavi},
  title        = {Multitask-Guided Self-Supervised Tabular Learning for Patient-Specific
                  Survival Prediction},
  booktitle    = {Machine Learning in Computational Biology, November 30 - December
                  1, 2023, Seattle, WA, {USA}},
  series       = {Proceedings of Machine Learning Research},
  volume       = {240},
  pages        = {10--22},
  publisher    = {{PMLR}},
  year         = {2023},
  url          = {https://proceedings.mlr.press/v240/wu24a.html},
  timestamp    = {Mon, 13 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mlcb/WuBLBLH23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mlcb/WuYDBXESC023,
  author       = {Kevin E. Wu and
                  Kathryn Yost and
                  Bence Daniel and
                  Julia A. Belk and
                  Yu Xia and
                  Takeshi Egawa and
                  Ansuman Satpathy and
                  Howard Chang and
                  James Zou},
  editor       = {David A. Knowles and
                  Sara Mostafavi},
  title        = {{TCR-BERT:} learning the grammar of T-cell receptors for flexible
                  antigen-binding analyses},
  booktitle    = {Machine Learning in Computational Biology, November 30 - December
                  1, 2023, Seattle, WA, {USA}},
  series       = {Proceedings of Machine Learning Research},
  volume       = {240},
  pages        = {194--229},
  publisher    = {{PMLR}},
  year         = {2023},
  url          = {https://proceedings.mlr.press/v240/wu24b.html},
  timestamp    = {Mon, 13 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mlcb/WuYDBXESC023.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mlcb/YuWMT023,
  author       = {Jennifer Yu and
                  Zhenqin Wu and
                  Aaron T. Mayer and
                  Alexandro Trevino and
                  James Zou},
  editor       = {David A. Knowles and
                  Sara Mostafavi},
  title        = {A Multi-Granularity Approach to Similarity Search in Multiplexed Immunofluorescence
                  Images},
  booktitle    = {Machine Learning in Computational Biology, November 30 - December
                  1, 2023, Seattle, WA, {USA}},
  series       = {Proceedings of Machine Learning Research},
  volume       = {240},
  pages        = {135--147},
  publisher    = {{PMLR}},
  year         = {2023},
  url          = {https://proceedings.mlr.press/v240/yu24a.html},
  timestamp    = {Mon, 13 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mlcb/YuWMT023.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mlcb/ZhangLBDC23,
  author       = {Chenwei Zhang and
                  Jordan Lovrod and
                  Boyan Beronov and
                  Khanh Dao Duc and
                  Anne Condon},
  editor       = {David A. Knowles and
                  Sara Mostafavi},
  title        = {ViDa: Visualizing {DNA} hybridization trajectories with biophysics-informed
                  deep graph embeddings},
  booktitle    = {Machine Learning in Computational Biology, November 30 - December
                  1, 2023, Seattle, WA, {USA}},
  series       = {Proceedings of Machine Learning Research},
  volume       = {240},
  pages        = {148--162},
  publisher    = {{PMLR}},
  year         = {2023},
  url          = {https://proceedings.mlr.press/v240/zhang24a.html},
  timestamp    = {Mon, 13 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mlcb/ZhangLBDC23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/mlcb/2023,
  editor       = {David A. Knowles and
                  Sara Mostafavi},
  title        = {Machine Learning in Computational Biology, November 30 - December
                  1, 2023, Seattle, WA, {USA}},
  series       = {Proceedings of Machine Learning Research},
  volume       = {240},
  publisher    = {{PMLR}},
  year         = {2023},
  url          = {https://proceedings.mlr.press/v240/},
  timestamp    = {Fri, 10 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mlcb/2023.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mlcb/GyawaliLZH22,
  author       = {Prashnna K. Gyawali and
                  Xiaoxia Liu and
                  James Zou and
                  Zihuai He},
  editor       = {David A. Knowles and
                  Sara Mostafavi and
                  Su{-}In Lee},
  title        = {Ensembling improves stability and power of feature selection for deep
                  learning models},
  booktitle    = {Machine Learning in Computational Biology, 21-22 November 2022, Online},
  series       = {Proceedings of Machine Learning Research},
  volume       = {200},
  pages        = {33--45},
  publisher    = {{PMLR}},
  year         = {2022},
  url          = {https://proceedings.mlr.press/v200/gyawali22a.html},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/mlcb/GyawaliLZH22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mlcb/KorasMSISS22,
  author       = {Krzysztof Koras and
                  Marcin Mozejko and
                  Paulina Szymczak and
                  Adam Izdebski and
                  Eike Staub and
                  Ewa Szczurek},
  editor       = {David A. Knowles and
                  Sara Mostafavi and
                  Su{-}In Lee},
  title        = {A generative recommender system with {GMM} prior for cancer drug generation
                  and sensitivity prediction},
  booktitle    = {Machine Learning in Computational Biology, 21-22 November 2022, Online},
  series       = {Proceedings of Machine Learning Research},
  volume       = {200},
  pages        = {61--73},
  publisher    = {{PMLR}},
  year         = {2022},
  url          = {https://proceedings.mlr.press/v200/koras22a.html},
  timestamp    = {Tue, 05 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mlcb/KorasMSISS22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mlcb/LalchandRDKSLMT22,
  author       = {Vidhi Lalchand and
                  Aditya Ravuri and
                  Emma Dann and
                  Natsuhiko Kumasaka and
                  Dinithi Sumanaweera and
                  Rik G. H. Lindeboom and
                  Shaista Madad and
                  Sarah A. Teichmann and
                  Neil D. Lawrence},
  editor       = {David A. Knowles and
                  Sara Mostafavi and
                  Su{-}In Lee},
  title        = {Modelling Technical and Biological Effects in scRNA-seq data with
                  Scalable GPLVMs},
  booktitle    = {Machine Learning in Computational Biology, 21-22 November 2022, Online},
  series       = {Proceedings of Machine Learning Research},
  volume       = {200},
  pages        = {46--60},
  publisher    = {{PMLR}},
  year         = {2022},
  url          = {https://proceedings.mlr.press/v200/lalchand22a.html},
  timestamp    = {Tue, 05 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mlcb/LalchandRDKSLMT22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mlcb/LinL22,
  author       = {Alexander Lin and
                  Alex Lu},
  editor       = {David A. Knowles and
                  Sara Mostafavi and
                  Su{-}In Lee},
  title        = {Incorporating knowledge of plates in batch normalization improves
                  generalization of deep learning for microscopy images},
  booktitle    = {Machine Learning in Computational Biology, 21-22 November 2022, Online},
  series       = {Proceedings of Machine Learning Research},
  volume       = {200},
  pages        = {74--93},
  publisher    = {{PMLR}},
  year         = {2022},
  url          = {https://proceedings.mlr.press/v200/lin22a.html},
  timestamp    = {Tue, 05 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mlcb/LinL22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mlcb/LiuFAL22,
  author       = {Tianyi Liu and
                  Philip Fradkin and
                  Lazar Atanackovic and
                  Leo J. Lee},
  editor       = {David A. Knowles and
                  Sara Mostafavi and
                  Su{-}In Lee},
  title        = {Energy-based Modelling for Single-cell Data Annotation},
  booktitle    = {Machine Learning in Computational Biology, 21-22 November 2022, Online},
  series       = {Proceedings of Machine Learning Research},
  volume       = {200},
  pages        = {94--109},
  publisher    = {{PMLR}},
  year         = {2022},
  url          = {https://proceedings.mlr.press/v200/liu22b.html},
  timestamp    = {Tue, 05 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mlcb/LiuFAL22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mlcb/LiuGS22,
  author       = {Tianyu Liu and
                  Grant Greenberg and
                  Ilan Shomorony},
  editor       = {David A. Knowles and
                  Sara Mostafavi and
                  Su{-}In Lee},
  title        = {{CVQVAE:} {A} representation learning based method for multi-omics
                  single cell data integration},
  booktitle    = {Machine Learning in Computational Biology, 21-22 November 2022, Online},
  series       = {Proceedings of Machine Learning Research},
  volume       = {200},
  pages        = {1--15},
  publisher    = {{PMLR}},
  year         = {2022},
  url          = {https://proceedings.mlr.press/v200/liu22a.html},
  timestamp    = {Tue, 05 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mlcb/LiuGS22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mlcb/MajdandzicRTTLT22,
  author       = {Antonio Majdandzic and
                  Chandana Rajesh and
                  Ziqi Tang and
                  Shushan Toneyan and
                  Ethan L. Labelson and
                  Rohit K. Tripathy and
                  Peter K. Koo},
  editor       = {David A. Knowles and
                  Sara Mostafavi and
                  Su{-}In Lee},
  title        = {Selecting deep neural networks that yield consistent attribution-based
                  interpretations for genomics},
  booktitle    = {Machine Learning in Computational Biology, 21-22 November 2022, Online},
  series       = {Proceedings of Machine Learning Research},
  volume       = {200},
  pages        = {131--149},
  publisher    = {{PMLR}},
  year         = {2022},
  url          = {https://proceedings.mlr.press/v200/majdandzic22a.html},
  timestamp    = {Thu, 07 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mlcb/MajdandzicRTTLT22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mlcb/SneddonMSE22,
  author       = {Alexandra Sneddon and
                  Pablo Acera Mateos and
                  Nikolay Shirokikh and
                  Eduardo Eyras},
  editor       = {David A. Knowles and
                  Sara Mostafavi and
                  Su{-}In Lee},
  title        = {Language-Informed Basecalling Architecture for Nanopore Direct {RNA}
                  Sequencing},
  booktitle    = {Machine Learning in Computational Biology, 21-22 November 2022, Online},
  series       = {Proceedings of Machine Learning Research},
  volume       = {200},
  pages        = {150--165},
  publisher    = {{PMLR}},
  year         = {2022},
  url          = {https://proceedings.mlr.press/v200/sneddon22a.html},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mlcb/SneddonMSE22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mlcb/SwansonCZ22,
  author       = {Kyle Swanson and
                  Howard Chang and
                  James Zou},
  editor       = {David A. Knowles and
                  Sara Mostafavi and
                  Su{-}In Lee},
  title        = {Predicting Immune Escape with Pretrained Protein Language Model Embeddings},
  booktitle    = {Machine Learning in Computational Biology, 21-22 November 2022, Online},
  series       = {Proceedings of Machine Learning Research},
  volume       = {200},
  pages        = {110--130},
  publisher    = {{PMLR}},
  year         = {2022},
  url          = {https://proceedings.mlr.press/v200/swanson22a.html},
  timestamp    = {Fri, 22 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mlcb/SwansonCZ22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mlcb/WeinbergerLHR22,
  author       = {Ethan Weinberger and
                  Romain Lopez and
                  Jan{-}Christian H{\"{u}}tter and
                  Aviv Regev},
  editor       = {David A. Knowles and
                  Sara Mostafavi and
                  Su{-}In Lee},
  title        = {Disentangling shared and group-specific variations in single-cell
                  transcriptomics data with multiGroupVI},
  booktitle    = {Machine Learning in Computational Biology, 21-22 November 2022, Online},
  series       = {Proceedings of Machine Learning Research},
  volume       = {200},
  pages        = {16--32},
  publisher    = {{PMLR}},
  year         = {2022},
  url          = {https://proceedings.mlr.press/v200/weinberger22a.html},
  timestamp    = {Tue, 05 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mlcb/WeinbergerLHR22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mlcb/WheelockMGS22,
  author       = {Lauren Berk Wheelock and
                  Stephen Malina and
                  Jeffrey Gerold and
                  Sam Sinai},
  editor       = {David A. Knowles and
                  Sara Mostafavi and
                  Su{-}In Lee},
  title        = {Forecasting labels under distribution-shift for machine-guided sequence
                  design},
  booktitle    = {Machine Learning in Computational Biology, 21-22 November 2022, Online},
  series       = {Proceedings of Machine Learning Research},
  volume       = {200},
  pages        = {166--180},
  publisher    = {{PMLR}},
  year         = {2022},
  url          = {https://proceedings.mlr.press/v200/wheelock22a.html},
  timestamp    = {Tue, 05 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mlcb/WheelockMGS22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/mlcb/2022,
  editor       = {David A. Knowles and
                  Sara Mostafavi and
                  Su{-}In Lee},
  title        = {Machine Learning in Computational Biology, 21-22 November 2022, Online},
  series       = {Proceedings of Machine Learning Research},
  volume       = {200},
  publisher    = {{PMLR}},
  year         = {2022},
  url          = {https://proceedings.mlr.press/v200/},
  timestamp    = {Tue, 05 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mlcb/2022.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mlcb/PrakashSK21,
  author       = {Eva Prakash and
                  Avanti Shrikumar and
                  Anshul Kundaje},
  editor       = {David A. Knowles and
                  Sara Mostafavi and
                  Su{-}In Lee},
  title        = {Towards More Realistic Simulated Datasets for Benchmarking Deep Learning
                  Models in Regulatory Genomics},
  booktitle    = {Machine Learning in Computational Biology Meeting, {MLCB} 2021, online,
                  November 22-23, 2021},
  series       = {Proceedings of Machine Learning Research},
  volume       = {165},
  pages        = {58--77},
  publisher    = {{PMLR}},
  year         = {2021},
  url          = {https://proceedings.mlr.press/v165/prakash22a.html},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mlcb/PrakashSK21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mlcb/SmithXLYG21,
  author       = {Jonathan A. J. Smith and
                  Hao Xu and
                  Xinran Li and
                  Laurence Yang and
                  Jahir Gutierrez},
  editor       = {David A. Knowles and
                  Sara Mostafavi and
                  Su{-}In Lee},
  title        = {Compound Screening with Deep Learning for Neglected Diseases: Leishmaniasis},
  booktitle    = {Machine Learning in Computational Biology Meeting, {MLCB} 2021, online,
                  November 22-23, 2021},
  series       = {Proceedings of Machine Learning Research},
  volume       = {165},
  pages        = {47--57},
  publisher    = {{PMLR}},
  year         = {2021},
  url          = {https://proceedings.mlr.press/v165/smith22a.html},
  timestamp    = {Fri, 05 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mlcb/SmithXLYG21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mlcb/XuWSM21,
  author       = {Zhiqing Xu and
                  Jinghao Wu and
                  Yun S. Song and
                  Radhakrishnan Mahadevan},
  editor       = {David A. Knowles and
                  Sara Mostafavi and
                  Su{-}In Lee},
  title        = {Enzyme Activity Prediction of Sequence Variants on Novel Substrates
                  using Improved Substrate Encodings and Convolutional Pooling},
  booktitle    = {Machine Learning in Computational Biology Meeting, {MLCB} 2021, online,
                  November 22-23, 2021},
  series       = {Proceedings of Machine Learning Research},
  volume       = {165},
  pages        = {78--87},
  publisher    = {{PMLR}},
  year         = {2021},
  url          = {https://proceedings.mlr.press/v165/xu22a.html},
  timestamp    = {Thu, 14 Jul 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mlcb/XuWSM21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mlcb/XueLFW21,
  author       = {Yang Xue and
                  Zijing Liu and
                  Xiaomin Fang and
                  Fan Wang},
  editor       = {David A. Knowles and
                  Sara Mostafavi and
                  Su{-}In Lee},
  title        = {Multimodal Pre-Training Model for Sequence-based Prediction of Protein-Protein
                  Interaction},
  booktitle    = {Machine Learning in Computational Biology Meeting, {MLCB} 2021, online,
                  November 22-23, 2021},
  series       = {Proceedings of Machine Learning Research},
  volume       = {165},
  pages        = {34--46},
  publisher    = {{PMLR}},
  year         = {2021},
  url          = {https://proceedings.mlr.press/v165/xue22a.html},
  timestamp    = {Thu, 08 Aug 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mlcb/XueLFW21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mlcb/ZhouSK21,
  author       = {Hannah Zhou and
                  Avanti Shrikumar and
                  Anshul Kundaje},
  editor       = {David A. Knowles and
                  Sara Mostafavi and
                  Su{-}In Lee},
  title        = {Towards a Better Understanding of Reverse-Complement Equivariance
                  for Deep Learning Models in Genomics},
  booktitle    = {Machine Learning in Computational Biology Meeting, {MLCB} 2021, online,
                  November 22-23, 2021},
  series       = {Proceedings of Machine Learning Research},
  volume       = {165},
  pages        = {1--33},
  publisher    = {{PMLR}},
  year         = {2021},
  url          = {https://proceedings.mlr.press/v165/zhou22a.html},
  timestamp    = {Thu, 14 Jul 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mlcb/ZhouSK21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/mlcb/2021,
  editor       = {David A. Knowles and
                  Sara Mostafavi and
                  Su{-}In Lee},
  title        = {Machine Learning in Computational Biology Meeting, {MLCB} 2021, online,
                  November 22-23, 2021},
  series       = {Proceedings of Machine Learning Research},
  volume       = {165},
  publisher    = {{PMLR}},
  year         = {2021},
  url          = {https://proceedings.mlr.press/v165/},
  timestamp    = {Thu, 14 Jul 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mlcb/2021.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}