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@inproceedings{DBLP:conf/cmsb/BallariniBC23, author = {Paolo Ballarini and Mahmoud Bentriou and Paul{-}Henry Courn{\`{e}}de}, editor = {Jun Pang and Joachim Niehren}, title = {A Formal Approach for Tuning Stochastic Oscillators}, booktitle = {Computational Methods in Systems Biology - 21st International Conference, {CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14137}, pages = {1--17}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-42697-1\_1}, doi = {10.1007/978-3-031-42697-1\_1}, timestamp = {Fri, 15 Sep 2023 15:00:48 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BallariniBC23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BenesBPSS23, author = {Nikola Benes and Lubos Brim and Samuel Pastva and David Safr{\'{a}}nek and Eva Smij{\'{a}}kov{\'{a}}}, editor = {Jun Pang and Joachim Niehren}, title = {Phenotype Control of Partially Specified Boolean Networks}, booktitle = {Computational Methods in Systems Biology - 21st International Conference, {CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14137}, pages = {18--35}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-42697-1\_2}, doi = {10.1007/978-3-031-42697-1\_2}, timestamp = {Sat, 14 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BenesBPSS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/ContentoSWH23, author = {Lorenzo Contento and Paul Stapor and Daniel Weindl and Jan Hasenauer}, editor = {Jun Pang and Joachim Niehren}, title = {A More Expressive Spline Representation for {SBML} Models Improves Code Generation Performance in {AMICI}}, booktitle = {Computational Methods in Systems Biology - 21st International Conference, {CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14137}, pages = {36--43}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-42697-1\_3}, doi = {10.1007/978-3-031-42697-1\_3}, timestamp = {Sun, 24 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/ContentoSWH23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/GundogduPANDL23, author = {Pelin Gundogdu and Miriam Pay{\'{a}}{-}Milans and Inmaculada Alamo{-}Alvarez and Isabel A. Nepomuceno{-}Chamorro and Joaqu{\'{\i}}n Dopazo and Carlos Loucera}, editor = {Jun Pang and Joachim Niehren}, title = {Cell-Level Pathway Scoring Comparison with a Biologically Constrained Variational Autoencoder}, booktitle = {Computational Methods in Systems Biology - 21st International Conference, {CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14137}, pages = {62--77}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-42697-1\_5}, doi = {10.1007/978-3-031-42697-1\_5}, timestamp = {Sun, 24 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/GundogduPANDL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/HemeryF23, author = {Mathieu Hemery and Fran{\c{c}}ois Fages}, editor = {Jun Pang and Joachim Niehren}, title = {On Estimating Derivatives of Input Signals in Biochemistry}, booktitle = {Computational Methods in Systems Biology - 21st International Conference, {CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14137}, pages = {78--96}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-42697-1\_6}, doi = {10.1007/978-3-031-42697-1\_6}, timestamp = {Fri, 15 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/HemeryF23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Herbach23, author = {Ulysse Herbach}, editor = {Jun Pang and Joachim Niehren}, title = {Harissa: Stochastic Simulation and Inference of Gene Regulatory Networks Based on Transcriptional Bursting}, booktitle = {Computational Methods in Systems Biology - 21st International Conference, {CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14137}, pages = {97--105}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-42697-1\_7}, doi = {10.1007/978-3-031-42697-1\_7}, timestamp = {Sun, 24 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/Herbach23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/LeguizamonRobayoJTTV23, author = {Alexander Leguizamon{-}Robayo and Antonio Jim{\'{e}}nez{-}Pastor and Mirco Tribastone and Max Tschaikowski and Andrea Vandin}, editor = {Jun Pang and Joachim Niehren}, title = {Approximate Constrained Lumping of Polynomial Differential Equations}, booktitle = {Computational Methods in Systems Biology - 21st International Conference, {CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14137}, pages = {106--123}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-42697-1\_8}, doi = {10.1007/978-3-031-42697-1\_8}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/LeguizamonRobayoJTTV23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/NicolaSIV23, author = {Rocco De Nicola and Luca Di Stefano and Omar Inverso and Serenella Valiani}, editor = {Jun Pang and Joachim Niehren}, title = {Intuitive Modelling and Formal Analysis of Collective Behaviour in Foraging Ants}, booktitle = {Computational Methods in Systems Biology - 21st International Conference, {CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14137}, pages = {44--61}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-42697-1\_4}, doi = {10.1007/978-3-031-42697-1\_4}, timestamp = {Fri, 15 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/NicolaSIV23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/NiehrenLV23, author = {Joachim Niehren and C{\'{e}}dric Lhoussaine and Ath{\'{e}}na{\"{\i}}s Vaginay}, editor = {Jun Pang and Joachim Niehren}, title = {Core {SBML} and Its Formal Semantics}, booktitle = {Computational Methods in Systems Biology - 21st International Conference, {CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14137}, pages = {124--143}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-42697-1\_9}, doi = {10.1007/978-3-031-42697-1\_9}, timestamp = {Fri, 15 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/NiehrenLV23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/RemyR23, author = {Elisabeth Remy and Paul Ruet}, editor = {Jun Pang and Joachim Niehren}, title = {Average Sensitivity of Nested Canalizing Multivalued Functions}, booktitle = {Computational Methods in Systems Biology - 21st International Conference, {CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14137}, pages = {144--156}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-42697-1\_10}, doi = {10.1007/978-3-031-42697-1\_10}, timestamp = {Fri, 15 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/RemyR23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/RivaLLP23, author = {Sara Riva and Jean{-}Marie Lagniez and Gustavo Maga{\~{n}}a L{\'{o}}pez and Lo{\"{\i}}c Paulev{\'{e}}}, editor = {Jun Pang and Joachim Niehren}, title = {Tackling Universal Properties of Minimal Trap Spaces of Boolean Networks}, booktitle = {Computational Methods in Systems Biology - 21st International Conference, {CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14137}, pages = {157--174}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-42697-1\_11}, doi = {10.1007/978-3-031-42697-1\_11}, timestamp = {Fri, 15 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/RivaLLP23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/SohMBBT23, author = {Takehide Soh and Morgan Magnin and Daniel Le Berre and Mutsunori Banbara and Naoyuki Tamura}, editor = {Jun Pang and Joachim Niehren}, title = {{SAF:} SAT-Based Attractor Finder in Asynchronous Automata Networks}, booktitle = {Computational Methods in Systems Biology - 21st International Conference, {CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14137}, pages = {175--183}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-42697-1\_12}, doi = {10.1007/978-3-031-42697-1\_12}, timestamp = {Sun, 24 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/SohMBBT23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/SunFM23, author = {Honglu Sun and Maxime Folschette and Morgan Magnin}, editor = {Jun Pang and Joachim Niehren}, title = {Condition for Periodic Attractor in 4-Dimensional Repressilators}, booktitle = {Computational Methods in Systems Biology - 21st International Conference, {CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14137}, pages = {184--201}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-42697-1\_13}, doi = {10.1007/978-3-031-42697-1\_13}, timestamp = {Sun, 24 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/SunFM23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/TonelloP23, author = {Elisa Tonello and Lo{\"{\i}}c Paulev{\'{e}}}, editor = {Jun Pang and Joachim Niehren}, title = {Attractor Identification in Asynchronous Boolean Dynamics with Network Reduction}, booktitle = {Computational Methods in Systems Biology - 21st International Conference, {CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14137}, pages = {202--219}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-42697-1\_14}, doi = {10.1007/978-3-031-42697-1\_14}, timestamp = {Sat, 14 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/TonelloP23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Treml23, author = {Lilly Maria Treml}, editor = {Jun Pang and Joachim Niehren}, title = {3D Hybrid Cellular Automata for Cardiac Electrophysiology: {A} Concept Study}, booktitle = {Computational Methods in Systems Biology - 21st International Conference, {CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14137}, pages = {220--235}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-42697-1\_15}, doi = {10.1007/978-3-031-42697-1\_15}, timestamp = {Sun, 24 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/Treml23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/WathieuSCT23, author = {Lancelot Wathieu and Gus Henry Smith and Luis Ceze and Chris Thachuk}, editor = {Jun Pang and Joachim Niehren}, title = {Fridge Compiler: Optimal Circuits from Molecular Inventories}, booktitle = {Computational Methods in Systems Biology - 21st International Conference, {CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14137}, pages = {236--252}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-42697-1\_16}, doi = {10.1007/978-3-031-42697-1\_16}, timestamp = {Fri, 15 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/WathieuSCT23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/ZabaikinaBS23, author = {Iryna Zabaikina and Pavol Bokes and Abhyudai Singh}, editor = {Jun Pang and Joachim Niehren}, title = {Joint Distribution of Protein Concentration and Cell Volume Coupled by Feedback in Dilution}, booktitle = {Computational Methods in Systems Biology - 21st International Conference, {CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14137}, pages = {253--268}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-42697-1\_17}, doi = {10.1007/978-3-031-42697-1\_17}, timestamp = {Sun, 24 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/ZabaikinaBS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/cmsb/2023, editor = {Jun Pang and Joachim Niehren}, title = {Computational Methods in Systems Biology - 21st International Conference, {CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14137}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-42697-1}, doi = {10.1007/978-3-031-42697-1}, isbn = {978-3-031-42696-4}, timestamp = {Fri, 15 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/2023.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/ArgyrisLTTV22, author = {Georgios Argyris and Alberto Lluch{-}Lafuente and Mirco Tribastone and Max Tschaikowski and Andrea Vandin}, editor = {Ion Petre and Andrei Paun}, title = {An Extension of {ERODE} to Reduce Boolean Networks By Backward Boolean Equivalence}, booktitle = {Computational Methods in Systems Biology - 20th International Conference, {CMSB} 2022, Bucharest, Romania, September 14-16, 2022, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {13447}, pages = {294--301}, publisher = {Springer}, year = {2022}, url = {https://doi.org/10.1007/978-3-031-15034-0\_16}, doi = {10.1007/978-3-031-15034-0\_16}, timestamp = {Thu, 25 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/ArgyrisLTTV22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BraichenkoGS22, author = {Svitlana Braichenko and Ramon Grima and Guido Sanguinetti}, editor = {Ion Petre and Andrei Paun}, title = {Bayesian Learning of Effective Chemical Master Equations in Crowded Intracellular Conditions}, booktitle = {Computational Methods in Systems Biology - 20th International Conference, {CMSB} 2022, Bucharest, Romania, September 14-16, 2022, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {13447}, pages = {239--258}, publisher = {Springer}, year = {2022}, url = {https://doi.org/10.1007/978-3-031-15034-0\_12}, doi = {10.1007/978-3-031-15034-0\_12}, timestamp = {Thu, 25 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BraichenkoGS22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/CravoFNP22, author = {Fabricio Cravo and Matthias F{\"{u}}gger and Thomas Nowak and Gayathri Prakash}, editor = {Ion Petre and Andrei Paun}, title = {MobsPy: {A} Meta-species Language for Chemical Reaction Networks}, booktitle = {Computational Methods in Systems Biology - 20th International Conference, {CMSB} 2022, Bucharest, Romania, September 14-16, 2022, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {13447}, pages = {277--285}, publisher = {Springer}, year = {2022}, url = {https://doi.org/10.1007/978-3-031-15034-0\_14}, doi = {10.1007/978-3-031-15034-0\_14}, timestamp = {Mon, 22 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/CravoFNP22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/DesoeuvresSR22, author = {Aur{\'{e}}lien Desoeuvres and Peter Szmolyan and Ovidiu Radulescu}, editor = {Ion Petre and Andrei Paun}, title = {Qualitative Dynamics of Chemical Reaction Networks: An Investigation Using Partial Tropical Equilibrations}, booktitle = {Computational Methods in Systems Biology - 20th International Conference, {CMSB} 2022, Bucharest, Romania, September 14-16, 2022, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {13447}, pages = {61--85}, publisher = {Springer}, year = {2022}, url = {https://doi.org/10.1007/978-3-031-15034-0\_4}, doi = {10.1007/978-3-031-15034-0\_4}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/DesoeuvresSR22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/GreugnySF22, author = {El{\'{e}}a Thibault Greugny and Georgios N. Stamatas and Fran{\c{c}}ois Fages}, editor = {Ion Petre and Andrei Paun}, title = {Stability Versus Meta-stability in a Skin Microbiome Model}, booktitle = {Computational Methods in Systems Biology - 20th International Conference, {CMSB} 2022, Bucharest, Romania, September 14-16, 2022, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {13447}, pages = {179--197}, publisher = {Springer}, year = {2022}, url = {https://doi.org/10.1007/978-3-031-15034-0\_9}, doi = {10.1007/978-3-031-15034-0\_9}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/GreugnySF22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/HelfrichCKM22, author = {Martin Helfrich and Milan Ceska and Jan Kret{\'{\i}}nsk{\'{y}} and Stefan Marticek}, editor = {Ion Petre and Andrei Paun}, title = {Abstraction-Based Segmental Simulation of Chemical Reaction Networks}, booktitle = {Computational Methods in Systems Biology - 20th International Conference, {CMSB} 2022, Bucharest, Romania, September 14-16, 2022, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {13447}, pages = {41--60}, publisher = {Springer}, year = {2022}, url = {https://doi.org/10.1007/978-3-031-15034-0\_3}, doi = {10.1007/978-3-031-15034-0\_3}, timestamp = {Sat, 10 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/HelfrichCKM22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/HemeryF22, author = {Mathieu Hemery and Fran{\c{c}}ois Fages}, editor = {Ion Petre and Andrei Paun}, title = {Algebraic Biochemistry: {A} Framework for Analog Online Computation in Cells}, booktitle = {Computational Methods in Systems Biology - 20th International Conference, {CMSB} 2022, Bucharest, Romania, September 14-16, 2022, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {13447}, pages = {3--20}, publisher = {Springer}, year = {2022}, url = {https://doi.org/10.1007/978-3-031-15034-0\_1}, doi = {10.1007/978-3-031-15034-0\_1}, timestamp = {Mon, 22 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/HemeryF22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Jimenez-PastorJ22, author = {Antonio Jim{\'{e}}nez{-}Pastor and Joshua Paul Jacob and Gleb Pogudin}, editor = {Ion Petre and Andrei Paun}, title = {Exact Linear Reduction for Rational Dynamical Systems}, booktitle = {Computational Methods in Systems Biology - 20th International Conference, {CMSB} 2022, Bucharest, Romania, September 14-16, 2022, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {13447}, pages = {198--216}, publisher = {Springer}, year = {2022}, url = {https://doi.org/10.1007/978-3-031-15034-0\_10}, doi = {10.1007/978-3-031-15034-0\_10}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/Jimenez-PastorJ22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/LaitinenL22, author = {Ville Laitinen and Leo Lahti}, editor = {Ion Petre and Andrei Paun}, title = {Probabilistic Multivariate Early Warning Signals}, booktitle = {Computational Methods in Systems Biology - 20th International Conference, {CMSB} 2022, Bucharest, Romania, September 14-16, 2022, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {13447}, pages = {259--274}, publisher = {Springer}, year = {2022}, url = {https://doi.org/10.1007/978-3-031-15034-0\_13}, doi = {10.1007/978-3-031-15034-0\_13}, timestamp = {Thu, 25 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/LaitinenL22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/NiehrenVV22, author = {Joachim Niehren and Ath{\'{e}}na{\"{\i}}s Vaginay and Cristian Versari}, editor = {Ion Petre and Andrei Paun}, title = {Abstract Simulation of Reaction Networks via Boolean Networks}, booktitle = {Computational Methods in Systems Biology - 20th International Conference, {CMSB} 2022, Bucharest, Romania, September 14-16, 2022, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {13447}, pages = {21--40}, publisher = {Springer}, year = {2022}, url = {https://doi.org/10.1007/978-3-031-15034-0\_2}, doi = {10.1007/978-3-031-15034-0\_2}, timestamp = {Sat, 10 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/NiehrenVV22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Pastva22, author = {Samuel Pastva}, editor = {Ion Petre and Andrei Paun}, title = {Variable Stabilisation in Boolean Monotonic Model Pools}, booktitle = {Computational Methods in Systems Biology - 20th International Conference, {CMSB} 2022, Bucharest, Romania, September 14-16, 2022, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {13447}, pages = {122--137}, publisher = {Springer}, year = {2022}, url = {https://doi.org/10.1007/978-3-031-15034-0\_6}, doi = {10.1007/978-3-031-15034-0\_6}, timestamp = {Mon, 22 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/Pastva22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/RedaD22, author = {Cl{\'{e}}mence R{\'{e}}da and Andr{\'{e}}e Delahaye{-}Duriez}, editor = {Ion Petre and Andrei Paun}, title = {Prioritization of Candidate Genes Through Boolean Networks}, booktitle = {Computational Methods in Systems Biology - 20th International Conference, {CMSB} 2022, Bucharest, Romania, September 14-16, 2022, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {13447}, pages = {89--121}, publisher = {Springer}, year = {2022}, url = {https://doi.org/10.1007/978-3-031-15034-0\_5}, doi = {10.1007/978-3-031-15034-0\_5}, timestamp = {Thu, 25 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/RedaD22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/RoncalliP22, author = {Th{\'{e}}o Roncalli and Lo{\"{\i}}c Paulev{\'{e}}}, editor = {Ion Petre and Andrei Paun}, title = {Variable-Depth Simulation of Most Permissive Boolean Networks}, booktitle = {Computational Methods in Systems Biology - 20th International Conference, {CMSB} 2022, Bucharest, Romania, September 14-16, 2022, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {13447}, pages = {138--157}, publisher = {Springer}, year = {2022}, url = {https://doi.org/10.1007/978-3-031-15034-0\_7}, doi = {10.1007/978-3-031-15034-0\_7}, timestamp = {Thu, 25 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/RoncalliP22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/SunFM22, author = {Honglu Sun and Maxime Folschette and Morgan Magnin}, editor = {Ion Petre and Andrei Paun}, title = {Limit Cycle Analysis of a Class of Hybrid Gene Regulatory Networks}, booktitle = {Computational Methods in Systems Biology - 20th International Conference, {CMSB} 2022, Bucharest, Romania, September 14-16, 2022, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {13447}, pages = {217--236}, publisher = {Springer}, year = {2022}, url = {https://doi.org/10.1007/978-3-031-15034-0\_11}, doi = {10.1007/978-3-031-15034-0\_11}, timestamp = {Thu, 25 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/SunFM22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/TrinhBHS22, author = {Van{-}Giang Trinh and Belaid Benhamou and Kunihiko Hiraishi and Sylvain Soliman}, editor = {Ion Petre and Andrei Paun}, title = {Minimal Trap Spaces of Logical Models are Maximal Siphons of Their Petri Net Encoding}, booktitle = {Computational Methods in Systems Biology - 20th International Conference, {CMSB} 2022, Bucharest, Romania, September 14-16, 2022, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {13447}, pages = {158--176}, publisher = {Springer}, year = {2022}, url = {https://doi.org/10.1007/978-3-031-15034-0\_8}, doi = {10.1007/978-3-031-15034-0\_8}, timestamp = {Thu, 25 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/TrinhBHS22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/TrojakSBB22, author = {Matej Troj{\'{a}}k and David Safr{\'{a}}nek and Branislav Brozmann and Lubos Brim}, editor = {Ion Petre and Andrei Paun}, title = {eBCSgen 2.0: Modelling and Analysis of Regulated Rule-Based Systems}, booktitle = {Computational Methods in Systems Biology - 20th International Conference, {CMSB} 2022, Bucharest, Romania, September 14-16, 2022, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {13447}, pages = {302--309}, publisher = {Springer}, year = {2022}, url = {https://doi.org/10.1007/978-3-031-15034-0\_17}, doi = {10.1007/978-3-031-15034-0\_17}, timestamp = {Mon, 22 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/TrojakSBB22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/WiederandersMZ22, author = {Hanna Josephine Wiederanders and Anne{-}Lena Moor and Christoph Zechner}, editor = {Ion Petre and Andrei Paun}, title = {Automated Generation of Conditional Moment Equations for Stochastic Reaction Networks}, booktitle = {Computational Methods in Systems Biology - 20th International Conference, {CMSB} 2022, Bucharest, Romania, September 14-16, 2022, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {13447}, pages = {286--293}, publisher = {Springer}, year = {2022}, url = {https://doi.org/10.1007/978-3-031-15034-0\_15}, doi = {10.1007/978-3-031-15034-0\_15}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/WiederandersMZ22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/cmsb/2022, editor = {Ion Petre and Andrei Paun}, title = {Computational Methods in Systems Biology - 20th International Conference, {CMSB} 2022, Bucharest, Romania, September 14-16, 2022, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {13447}, publisher = {Springer}, year = {2022}, url = {https://doi.org/10.1007/978-3-031-15034-0}, doi = {10.1007/978-3-031-15034-0}, isbn = {978-3-031-15033-3}, timestamp = {Mon, 22 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/2022.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/ArgyrisLTTV21, author = {Georgios Argyris and Alberto Lluch{-}Lafuente and Mirco Tribastone and Max Tschaikowski and Andrea Vandin}, editor = {Eugenio Cinquemani and Lo{\"{\i}}c Paulev{\'{e}}}, title = {Reducing Boolean Networks with Backward Boolean Equivalence}, booktitle = {Computational Methods in Systems Biology - 19th International Conference, {CMSB} 2021, Bordeaux, France, September 22-24, 2021, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12881}, pages = {1--18}, publisher = {Springer}, year = {2021}, url = {https://doi.org/10.1007/978-3-030-85633-5\_1}, doi = {10.1007/978-3-030-85633-5\_1}, timestamp = {Thu, 16 Sep 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/ArgyrisLTTV21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BenesBPS21, author = {Nikola Benes and Lubos Brim and Samuel Pastva and David Safr{\'{a}}nek}, editor = {Eugenio Cinquemani and Lo{\"{\i}}c Paulev{\'{e}}}, title = {Aeon 2021: Bifurcation Decision Trees in Boolean Networks}, booktitle = {Computational Methods in Systems Biology - 19th International Conference, {CMSB} 2021, Bordeaux, France, September 22-24, 2021, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12881}, pages = {230--237}, publisher = {Springer}, year = {2021}, url = {https://doi.org/10.1007/978-3-030-85633-5\_14}, doi = {10.1007/978-3-030-85633-5\_14}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BenesBPS21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BiswasGMT21, author = {Ansuman Biswas and Ashutosh Gupta and Meghana Missula and Mukund Thattai}, editor = {Eugenio Cinquemani and Lo{\"{\i}}c Paulev{\'{e}}}, title = {Automated Inference of Production Rules for Glycans}, booktitle = {Computational Methods in Systems Biology - 19th International Conference, {CMSB} 2021, Bordeaux, France, September 22-24, 2021, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12881}, pages = {57--73}, publisher = {Springer}, year = {2021}, url = {https://doi.org/10.1007/978-3-030-85633-5\_4}, doi = {10.1007/978-3-030-85633-5\_4}, timestamp = {Tue, 14 Sep 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BiswasGMT21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BuffardDNRZR21, author = {Marion Buffard and Aur{\'{e}}lien Desoeuvres and Aur{\'{e}}lien Naldi and Cl{\'{e}}ment Requil{\'{e}} and Andrei Yu. Zinovyev and Ovidiu Radulescu}, editor = {Eugenio Cinquemani and Lo{\"{\i}}c Paulev{\'{e}}}, title = {LNetReduce: Tool for Reducing Linear Dynamic Networks with Separated Timescales}, booktitle = {Computational Methods in Systems Biology - 19th International Conference, {CMSB} 2021, Bordeaux, France, September 22-24, 2021, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12881}, pages = {238--244}, publisher = {Springer}, year = {2021}, url = {https://doi.org/10.1007/978-3-030-85633-5\_15}, doi = {10.1007/978-3-030-85633-5\_15}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BuffardDNRZR21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/CairoliCB21, author = {Francesca Cairoli and Ginevra Carbone and Luca Bortolussi}, editor = {Eugenio Cinquemani and Lo{\"{\i}}c Paulev{\'{e}}}, title = {Abstraction of Markov Population Dynamics via Generative Adversarial Nets}, booktitle = {Computational Methods in Systems Biology - 19th International Conference, {CMSB} 2021, Bordeaux, France, September 22-24, 2021, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12881}, pages = {19--35}, publisher = {Springer}, year = {2021}, url = {https://doi.org/10.1007/978-3-030-85633-5\_2}, doi = {10.1007/978-3-030-85633-5\_2}, timestamp = {Tue, 14 Sep 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/CairoliCB21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/CelikBS21, author = {Candan {\c{C}}elik and Pavol Bokes and Abhyudai Singh}, editor = {Eugenio Cinquemani and Lo{\"{\i}}c Paulev{\'{e}}}, title = {Protein Noise and Distribution in a Two-Stage Gene-Expression Model Extended by an mRNA Inactivation Loop}, booktitle = {Computational Methods in Systems Biology - 19th International Conference, {CMSB} 2021, Bordeaux, France, September 22-24, 2021, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12881}, pages = {215--229}, publisher = {Springer}, year = {2021}, url = {https://doi.org/10.1007/978-3-030-85633-5\_13}, doi = {10.1007/978-3-030-85633-5\_13}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/CelikBS21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/DotyS21, author = {David Doty and Eric E. Severson}, editor = {Eugenio Cinquemani and Lo{\"{\i}}c Paulev{\'{e}}}, title = {Ppsim: {A} Software Package for Efficiently Simulating and Visualizing Population Protocols}, booktitle = {Computational Methods in Systems Biology - 19th International Conference, {CMSB} 2021, Bordeaux, France, September 22-24, 2021, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12881}, pages = {245--253}, publisher = {Springer}, year = {2021}, url = {https://doi.org/10.1007/978-3-030-85633-5\_16}, doi = {10.1007/978-3-030-85633-5\_16}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/DotyS21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/GibartCC21, author = {Laetitia Gibart and H{\'{e}}l{\`{e}}ne Collavizza and Jean{-}Paul Comet}, editor = {Eugenio Cinquemani and Lo{\"{\i}}c Paulev{\'{e}}}, title = {Greening R. Thomas' Framework with Environment Variables: {A} Divide and Conquer Approach}, booktitle = {Computational Methods in Systems Biology - 19th International Conference, {CMSB} 2021, Bordeaux, France, September 22-24, 2021, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12881}, pages = {36--56}, publisher = {Springer}, year = {2021}, url = {https://doi.org/10.1007/978-3-030-85633-5\_3}, doi = {10.1007/978-3-030-85633-5\_3}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/GibartCC21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/HemeryFS21, author = {Mathieu Hemery and Fran{\c{c}}ois Fages and Sylvain Soliman}, editor = {Eugenio Cinquemani and Lo{\"{\i}}c Paulev{\'{e}}}, title = {Compiling Elementary Mathematical Functions into Finite Chemical Reaction Networks via a Polynomialization Algorithm for ODEs}, booktitle = {Computational Methods in Systems Biology - 19th International Conference, {CMSB} 2021, Bordeaux, France, September 22-24, 2021, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12881}, pages = {74--90}, publisher = {Springer}, year = {2021}, url = {https://doi.org/10.1007/978-3-030-85633-5\_5}, doi = {10.1007/978-3-030-85633-5\_5}, timestamp = {Tue, 14 Sep 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/HemeryFS21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/IlmerOP21, author = {Ilia Ilmer and Alexey Ovchinnikov and Gleb Pogudin}, editor = {Eugenio Cinquemani and Lo{\"{\i}}c Paulev{\'{e}}}, title = {Web-Based Structural Identifiability Analyzer}, booktitle = {Computational Methods in Systems Biology - 19th International Conference, {CMSB} 2021, Bordeaux, France, September 22-24, 2021, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12881}, pages = {254--265}, publisher = {Springer}, year = {2021}, url = {https://doi.org/10.1007/978-3-030-85633-5\_17}, doi = {10.1007/978-3-030-85633-5\_17}, timestamp = {Tue, 14 Sep 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/IlmerOP21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/PogudinZ21, author = {Gleb Pogudin and Xingjian Zhang}, editor = {Eugenio Cinquemani and Lo{\"{\i}}c Paulev{\'{e}}}, title = {Interpretable Exact Linear Reductions via Positivity}, booktitle = {Computational Methods in Systems Biology - 19th International Conference, {CMSB} 2021, Bordeaux, France, September 22-24, 2021, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12881}, pages = {91--107}, publisher = {Springer}, year = {2021}, url = {https://doi.org/10.1007/978-3-030-85633-5\_6}, doi = {10.1007/978-3-030-85633-5\_6}, timestamp = {Thu, 01 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/PogudinZ21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/RazzaqGIMBIBOMT21, author = {Misbah Razzaq and Louisa Goumidi and Maria{-}Jesus Iglesias and Ga{\"{e}}lle Munsch and Maria Bruzelius and Manal Ibrahim{-}Kosta and Lynn Butler and Jacob Odeberg and Pierre{-}Emmanuel Morange and David Alexandre Tregouet}, editor = {Eugenio Cinquemani and Lo{\"{\i}}c Paulev{\'{e}}}, title = {Explainable Artificial Neural Network for Recurrent Venous Thromboembolism Based on Plasma Proteomics}, booktitle = {Computational Methods in Systems Biology - 19th International Conference, {CMSB} 2021, Bordeaux, France, September 22-24, 2021, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12881}, pages = {108--121}, publisher = {Springer}, year = {2021}, url = {https://doi.org/10.1007/978-3-030-85633-5\_7}, doi = {10.1007/978-3-030-85633-5\_7}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/RazzaqGIMBIBOMT21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/SautreuilLC21, author = {Mathilde Sautreuil and Sarah Lemler and Paul{-}Henry Courn{\`{e}}de}, editor = {Eugenio Cinquemani and Lo{\"{\i}}c Paulev{\'{e}}}, title = {Neural Networks to Predict Survival from RNA-seq Data in Oncology}, booktitle = {Computational Methods in Systems Biology - 19th International Conference, {CMSB} 2021, Bordeaux, France, September 22-24, 2021, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12881}, pages = {122--140}, publisher = {Springer}, year = {2021}, url = {https://doi.org/10.1007/978-3-030-85633-5\_8}, doi = {10.1007/978-3-030-85633-5\_8}, timestamp = {Thu, 16 Sep 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/SautreuilLC21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/SaxenaLMDV21, author = {Gaurav Saxena and Miguel Ponce de Leon and Arnau Montagud and David Vicente Dorca and Alfonso Valencia}, editor = {Eugenio Cinquemani and Lo{\"{\i}}c Paulev{\'{e}}}, title = {BioFVM-X: An MPI+OpenMP 3-D Simulator for Biological Systems}, booktitle = {Computational Methods in Systems Biology - 19th International Conference, {CMSB} 2021, Bordeaux, France, September 22-24, 2021, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12881}, pages = {266--279}, publisher = {Springer}, year = {2021}, url = {https://doi.org/10.1007/978-3-030-85633-5\_18}, doi = {10.1007/978-3-030-85633-5\_18}, timestamp = {Thu, 16 Sep 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/SaxenaLMDV21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/TheorellS21, author = {Axel Theorell and J{\"{o}}rg Stelling}, editor = {Eugenio Cinquemani and Lo{\"{\i}}c Paulev{\'{e}}}, title = {Microbial Community Decision Making Models in Batch and Chemostat Cultures}, booktitle = {Computational Methods in Systems Biology - 19th International Conference, {CMSB} 2021, Bordeaux, France, September 22-24, 2021, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12881}, pages = {141--158}, publisher = {Springer}, year = {2021}, url = {https://doi.org/10.1007/978-3-030-85633-5\_9}, doi = {10.1007/978-3-030-85633-5\_9}, timestamp = {Tue, 28 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/TheorellS21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/ThuillierBBCPS21, author = {Kerian Thuillier and Caroline Baroukh and Alexander Bockmayr and Ludovic Cottret and Lo{\"{\i}}c Paulev{\'{e}} and Anne Siegel}, editor = {Eugenio Cinquemani and Lo{\"{\i}}c Paulev{\'{e}}}, title = {Learning Boolean Controls in Regulated Metabolic Networks: {A} Case-Study}, booktitle = {Computational Methods in Systems Biology - 19th International Conference, {CMSB} 2021, Bordeaux, France, September 22-24, 2021, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12881}, pages = {159--180}, publisher = {Springer}, year = {2021}, url = {https://doi.org/10.1007/978-3-030-85633-5\_10}, doi = {10.1007/978-3-030-85633-5\_10}, timestamp = {Sun, 12 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/ThuillierBBCPS21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/TurpinBKS21, author = {Baptiste Turpin and Eline Y. Bijman and Hans{-}Michael Kaltenbach and J{\"{o}}rg Stelling}, editor = {Eugenio Cinquemani and Lo{\"{\i}}c Paulev{\'{e}}}, title = {Population Design for Synthetic Gene Circuits}, booktitle = {Computational Methods in Systems Biology - 19th International Conference, {CMSB} 2021, Bordeaux, France, September 22-24, 2021, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12881}, pages = {181--197}, publisher = {Springer}, year = {2021}, url = {https://doi.org/10.1007/978-3-030-85633-5\_11}, doi = {10.1007/978-3-030-85633-5\_11}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/TurpinBKS21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/WarnkeU21, author = {Tom Warnke and Adelinde M. Uhrmacher}, editor = {Eugenio Cinquemani and Lo{\"{\i}}c Paulev{\'{e}}}, title = {Nonlinear Pattern Matching in Rule-Based Modeling Languages}, booktitle = {Computational Methods in Systems Biology - 19th International Conference, {CMSB} 2021, Bordeaux, France, September 22-24, 2021, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12881}, pages = {198--214}, publisher = {Springer}, year = {2021}, url = {https://doi.org/10.1007/978-3-030-85633-5\_12}, doi = {10.1007/978-3-030-85633-5\_12}, timestamp = {Thu, 16 Sep 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/WarnkeU21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/cmsb/2021, editor = {Eugenio Cinquemani and Lo{\"{\i}}c Paulev{\'{e}}}, title = {Computational Methods in Systems Biology - 19th International Conference, {CMSB} 2021, Bordeaux, France, September 22-24, 2021, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12881}, publisher = {Springer}, year = {2021}, url = {https://doi.org/10.1007/978-3-030-85633-5}, doi = {10.1007/978-3-030-85633-5}, isbn = {978-3-030-85632-8}, timestamp = {Tue, 14 Sep 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/2021.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BarsBG20, author = {Sophie Le Bars and J{\'{e}}r{\'{e}}mie Bourdon and Carito Guziolowski}, editor = {Alessandro Abate and Tatjana Petrov and Verena Wolf}, title = {Comparing Probabilistic and Logic Programming Approaches to Predict the Effects of Enzymes in a Neurodegenerative Disease Model}, booktitle = {Computational Methods in Systems Biology - 18th International Conference, {CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12314}, pages = {141--156}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-60327-4\_8}, doi = {10.1007/978-3-030-60327-4\_8}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BarsBG20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BokesKP20, author = {Pavol Bokes and Julia Klein and Tatjana Petrov}, editor = {Alessandro Abate and Tatjana Petrov and Verena Wolf}, title = {Accelerating Reactions at the {DNA} Can Slow Down Transient Gene Expression}, booktitle = {Computational Methods in Systems Biology - 18th International Conference, {CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12314}, pages = {44--60}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-60327-4\_3}, doi = {10.1007/978-3-030-60327-4\_3}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BokesKP20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BoyenvalBCC20, author = {D{\'{e}}borah Boyenval and Gilles Bernot and H{\'{e}}l{\`{e}}ne Collavizza and Jean{-}Paul Comet}, editor = {Alessandro Abate and Tatjana Petrov and Verena Wolf}, title = {What is a Cell Cycle Checkpoint? The TotemBioNet Answer}, booktitle = {Computational Methods in Systems Biology - 18th International Conference, {CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12314}, pages = {362--372}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-60327-4\_21}, doi = {10.1007/978-3-030-60327-4\_21}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BoyenvalBCC20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Cardelli20, author = {Luca Cardelli}, editor = {Alessandro Abate and Tatjana Petrov and Verena Wolf}, title = {Kaemika App: Integrating Protocols and Chemical Simulation - Integrating Protocols and Chemical Simulation}, booktitle = {Computational Methods in Systems Biology - 18th International Conference, {CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12314}, pages = {373--379}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-60327-4\_22}, doi = {10.1007/978-3-030-60327-4\_22}, timestamp = {Thu, 01 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/Cardelli20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/CelikBS20, author = {Candan {\c{C}}elik and Pavol Bokes and Abhyudai Singh}, editor = {Alessandro Abate and Tatjana Petrov and Verena Wolf}, title = {Stationary Distributions and Metastable Behaviour for Self-regulating Proteins with General Lifetime Distributions}, booktitle = {Computational Methods in Systems Biology - 18th International Conference, {CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12314}, pages = {27--43}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-60327-4\_2}, doi = {10.1007/978-3-030-60327-4\_2}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/CelikBS20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/ChevalierNCZP20, author = {St{\'{e}}phanie Chevalier and Vincent No{\"{e}}l and Laurence Calzone and Andrei Yu. Zinovyev and Lo{\"{\i}}c Paulev{\'{e}}}, editor = {Alessandro Abate and Tatjana Petrov and Verena Wolf}, title = {Synthesis and Simulation of Ensembles of Boolean Networks for Cell Fate Decision}, booktitle = {Computational Methods in Systems Biology - 18th International Conference, {CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12314}, pages = {193--209}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-60327-4\_11}, doi = {10.1007/978-3-030-60327-4\_11}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/ChevalierNCZP20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/DanosHHS20, author = {Vincent Danos and Tobias Heindel and Ricardo Honorato{-}Zimmer and Sandro Stucki}, editor = {Alessandro Abate and Tatjana Petrov and Verena Wolf}, title = {Rate Equations for Graphs}, booktitle = {Computational Methods in Systems Biology - 18th International Conference, {CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12314}, pages = {3--26}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-60327-4\_1}, doi = {10.1007/978-3-030-60327-4\_1}, timestamp = {Tue, 06 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/DanosHHS20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/DegrandFS20, author = {Elisabeth Degrand and Fran{\c{c}}ois Fages and Sylvain Soliman}, editor = {Alessandro Abate and Tatjana Petrov and Verena Wolf}, title = {Graphical Conditions for Rate Independence in Chemical Reaction Networks}, booktitle = {Computational Methods in Systems Biology - 18th International Conference, {CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12314}, pages = {61--78}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-60327-4\_4}, doi = {10.1007/978-3-030-60327-4\_4}, timestamp = {Thu, 01 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/DegrandFS20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/DesoeuvresTR20, author = {Aur{\'{e}}lien Desoeuvres and Gilles Trombettoni and Ovidiu Radulescu}, editor = {Alessandro Abate and Tatjana Petrov and Verena Wolf}, title = {Interval Constraint Satisfaction and Optimization for Biological Homeostasis and Multistationarity}, booktitle = {Computational Methods in Systems Biology - 18th International Conference, {CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12314}, pages = {79--101}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-60327-4\_5}, doi = {10.1007/978-3-030-60327-4\_5}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/DesoeuvresTR20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/DiopCT20, author = {Ousmane Diop and Madalena Chaves and Laurent Tournier}, editor = {Alessandro Abate and Tatjana Petrov and Verena Wolf}, title = {Qualitative Analysis of Mammalian Circadian Oscillations: Cycle Dynamics and Robustness}, booktitle = {Computational Methods in Systems Biology - 18th International Conference, {CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12314}, pages = {176--192}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-60327-4\_10}, doi = {10.1007/978-3-030-60327-4\_10}, timestamp = {Thu, 01 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/DiopCT20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/FontanalsTS20, author = {Laura Cifuentes Fontanals and Elisa Tonello and Heike Siebert}, editor = {Alessandro Abate and Tatjana Petrov and Verena Wolf}, title = {Control Strategy Identification via Trap Spaces in Boolean Networks}, booktitle = {Computational Methods in Systems Biology - 18th International Conference, {CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12314}, pages = {159--175}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-60327-4\_9}, doi = {10.1007/978-3-030-60327-4\_9}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/FontanalsTS20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/GouveiaLM20, author = {Filipe Gouveia and In{\^{e}}s Lynce and Pedro T. Monteiro}, editor = {Alessandro Abate and Tatjana Petrov and Verena Wolf}, title = {ModRev - Model Revision Tool for Boolean Logical Models of Biological Regulatory Networks}, booktitle = {Computational Methods in Systems Biology - 18th International Conference, {CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12314}, pages = {339--348}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-60327-4\_18}, doi = {10.1007/978-3-030-60327-4\_18}, timestamp = {Thu, 04 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/GouveiaLM20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/HaarPS20, author = {Stefan Haar and Lo{\"{\i}}c Paulev{\'{e}} and Stefan Schwoon}, editor = {Alessandro Abate and Tatjana Petrov and Verena Wolf}, title = {Drawing the Line: Basin Boundaries in Safe Petri Nets}, booktitle = {Computational Methods in Systems Biology - 18th International Conference, {CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12314}, pages = {321--336}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-60327-4\_17}, doi = {10.1007/978-3-030-60327-4\_17}, timestamp = {Thu, 01 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/HaarPS20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/HemeryFS20, author = {Mathieu Hemery and Fran{\c{c}}ois Fages and Sylvain Soliman}, editor = {Alessandro Abate and Tatjana Petrov and Verena Wolf}, title = {On the Complexity of Quadratization for Polynomial Differential Equations}, booktitle = {Computational Methods in Systems Biology - 18th International Conference, {CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12314}, pages = {120--140}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-60327-4\_7}, doi = {10.1007/978-3-030-60327-4\_7}, timestamp = {Thu, 01 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/HemeryFS20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/JulvezO20, author = {Jorge J{\'{u}}lvez and Stephen G. Oliver}, editor = {Alessandro Abate and Tatjana Petrov and Verena Wolf}, title = {fnyzer: {A} Python Package for the Analysis of Flexible Nets}, booktitle = {Computational Methods in Systems Biology - 18th International Conference, {CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12314}, pages = {349--355}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-60327-4\_19}, doi = {10.1007/978-3-030-60327-4\_19}, timestamp = {Wed, 07 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/JulvezO20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/MolyneuxA20, author = {Gareth W. Molyneux and Alessandro Abate}, editor = {Alessandro Abate and Tatjana Petrov and Verena Wolf}, title = {ABC(SMC)\({}^{\mbox{2}}\): Simultaneous Inference and Model Checking of Chemical Reaction Networks}, booktitle = {Computational Methods in Systems Biology - 18th International Conference, {CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12314}, pages = {255--279}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-60327-4\_14}, doi = {10.1007/978-3-030-60327-4\_14}, timestamp = {Thu, 01 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/MolyneuxA20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/OargaBJ20, author = {Alexandru Oarga and Bridget Bannerman and Jorge J{\'{u}}lvez}, editor = {Alessandro Abate and Tatjana Petrov and Verena Wolf}, title = {Growth Dependent Computation of Chokepoints in Metabolic Networks}, booktitle = {Computational Methods in Systems Biology - 18th International Conference, {CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12314}, pages = {102--119}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-60327-4\_6}, doi = {10.1007/978-3-030-60327-4\_6}, timestamp = {Wed, 07 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/OargaBJ20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/PereCR20, author = {Marielle P{\'{e}}r{\'{e}} and Madalena Chaves and J{\'{e}}r{\'{e}}mie Roux}, editor = {Alessandro Abate and Tatjana Petrov and Verena Wolf}, title = {Core Models of Receptor Reactions to Evaluate Basic Pathway Designs Enabling Heterogeneous Commitments to Apoptosis}, booktitle = {Computational Methods in Systems Biology - 18th International Conference, {CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12314}, pages = {298--320}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-60327-4\_16}, doi = {10.1007/978-3-030-60327-4\_16}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/PereCR20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/SchwiegerBSH20, author = {Robert Schwieger and Mat{\'{\i}}as R. Bender and Heike Siebert and Christian Haase}, editor = {Alessandro Abate and Tatjana Petrov and Verena Wolf}, title = {Classifier Construction in Boolean Networks Using Algebraic Methods}, booktitle = {Computational Methods in Systems Biology - 18th International Conference, {CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12314}, pages = {210--233}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-60327-4\_12}, doi = {10.1007/978-3-030-60327-4\_12}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/SchwiegerBSH20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/SmijakovaPSB20, author = {Eva Smij{\'{a}}kov{\'{a}} and Samuel Pastva and David Safr{\'{a}}nek and Lubos Brim}, editor = {Alessandro Abate and Tatjana Petrov and Verena Wolf}, title = {Parallel Parameter Synthesis for Multi-affine Hybrid Systems from Hybrid {CTL} Specifications}, booktitle = {Computational Methods in Systems Biology - 18th International Conference, {CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12314}, pages = {280--297}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-60327-4\_15}, doi = {10.1007/978-3-030-60327-4\_15}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/SmijakovaPSB20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Su020, author = {Cui Su and Jun Pang}, editor = {Alessandro Abate and Tatjana Petrov and Verena Wolf}, title = {Sequential Temporary and Permanent Control of Boolean Networks}, booktitle = {Computational Methods in Systems Biology - 18th International Conference, {CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12314}, pages = {234--251}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-60327-4\_13}, doi = {10.1007/978-3-030-60327-4\_13}, timestamp = {Thu, 01 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/Su020.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/TrojakSMB20, author = {Matej Troj{\'{a}}k and David Safr{\'{a}}nek and Lukr{\'{e}}cia Mertov{\'{a}} and Lubos Brim}, editor = {Alessandro Abate and Tatjana Petrov and Verena Wolf}, title = {eBCSgen: {A} Software Tool for Biochemical Space Language}, booktitle = {Computational Methods in Systems Biology - 18th International Conference, {CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12314}, pages = {356--361}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-60327-4\_20}, doi = {10.1007/978-3-030-60327-4\_20}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/TrojakSMB20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/cmsb/2020, editor = {Alessandro Abate and Tatjana Petrov and Verena Wolf}, title = {Computational Methods in Systems Biology - 18th International Conference, {CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12314}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-60327-4}, doi = {10.1007/978-3-030-60327-4}, isbn = {978-3-030-60326-7}, timestamp = {Thu, 01 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/2020.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/0001K19, author = {Milan Ceska and Jan Kret{\'{\i}}nsk{\'{y}}}, editor = {Luca Bortolussi and Guido Sanguinetti}, title = {Semi-quantitative Abstraction and Analysis of Chemical Reaction Networks (Extended Abstract)}, booktitle = {Computational Methods in Systems Biology - 17th International Conference, {CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11773}, pages = {337--341}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-31304-3\_22}, doi = {10.1007/978-3-030-31304-3\_22}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/0001K19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Abdeljaoued-Tej19, author = {Ines Abdeljaoued{-}Tej and Alia Benkahla and Ghassen Haddad and Annick Valibouze}, editor = {Luca Bortolussi and Guido Sanguinetti}, title = {Separators for Polynomial Dynamic Systems with Linear Complexity}, booktitle = {Computational Methods in Systems Biology - 17th International Conference, {CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11773}, pages = {373--378}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-31304-3\_30}, doi = {10.1007/978-3-030-31304-3\_30}, timestamp = {Mon, 23 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/Abdeljaoued-Tej19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/AllartNV19, author = {Emilie Allart and Joachim Niehren and Cristian Versari}, editor = {Luca Bortolussi and Guido Sanguinetti}, title = {Computing Difference Abstractions of Metabolic Networks Under Kinetic Constraints}, booktitle = {Computational Methods in Systems Biology - 17th International Conference, {CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11773}, pages = {266--285}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-31304-3\_14}, doi = {10.1007/978-3-030-31304-3\_14}, timestamp = {Tue, 17 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/AllartNV19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/AssafH019, author = {George Assaf and Monika Heiner and Fei Liu}, editor = {Luca Bortolussi and Guido Sanguinetti}, title = {Biochemical Reaction Networks with Fuzzy Kinetic Parameters in Snoopy}, booktitle = {Computational Methods in Systems Biology - 17th International Conference, {CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11773}, pages = {302--307}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-31304-3\_17}, doi = {10.1007/978-3-030-31304-3\_17}, timestamp = {Sun, 25 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/AssafH019.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BackenkohlerBW19, author = {Michael Backenk{\"{o}}hler and Luca Bortolussi and Verena Wolf}, editor = {Luca Bortolussi and Guido Sanguinetti}, title = {Control Variates for Stochastic Simulation of Chemical Reaction Networks}, booktitle = {Computational Methods in Systems Biology - 17th International Conference, {CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11773}, pages = {42--59}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-31304-3\_3}, doi = {10.1007/978-3-030-31304-3\_3}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/BackenkohlerBW19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BackenkohlerBW19a, author = {Michael Backenk{\"{o}}hler and Luca Bortolussi and Verena Wolf}, editor = {Luca Bortolussi and Guido Sanguinetti}, title = {Bounding First Passage Times in Chemical Reaction Networks - Poster Abstract}, booktitle = {Computational Methods in Systems Biology - 17th International Conference, {CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11773}, pages = {379--382}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-31304-3\_31}, doi = {10.1007/978-3-030-31304-3\_31}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/BackenkohlerBW19a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BentriouBC19, author = {Mahmoud Bentriou and Paolo Ballarini and Paul{-}Henry Courn{\`{e}}de}, editor = {Luca Bortolussi and Guido Sanguinetti}, title = {Reachability Design Through Approximate Bayesian Computation}, booktitle = {Computational Methods in Systems Biology - 17th International Conference, {CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11773}, pages = {207--223}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-31304-3\_11}, doi = {10.1007/978-3-030-31304-3\_11}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/BentriouBC19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BokesS19, author = {Pavol Bokes and Abhyudai Singh}, editor = {Luca Bortolussi and Guido Sanguinetti}, title = {Cell Volume Distributions in Exponentially Growing Populations}, booktitle = {Computational Methods in Systems Biology - 17th International Conference, {CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11773}, pages = {140--154}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-31304-3\_8}, doi = {10.1007/978-3-030-31304-3\_8}, timestamp = {Sun, 25 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BokesS19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Boutillier19, author = {Pierre Boutillier}, editor = {Luca Bortolussi and Guido Sanguinetti}, title = {The Kappa Simulator Made Interactive}, booktitle = {Computational Methods in Systems Biology - 17th International Conference, {CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11773}, pages = {296--301}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-31304-3\_16}, doi = {10.1007/978-3-030-31304-3\_16}, timestamp = {Mon, 23 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/Boutillier19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/ChodakH19, author = {Jacek Chodak and Monika Heiner}, editor = {Luca Bortolussi and Guido Sanguinetti}, title = {Spike - Reproducible Simulation Experiments with Configuration File Branching}, booktitle = {Computational Methods in Systems Biology - 17th International Conference, {CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11773}, pages = {315--321}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-31304-3\_19}, doi = {10.1007/978-3-030-31304-3\_19}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/ChodakH19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/DegrandHF19, author = {Elisabeth Degrand and Mathieu Hemery and Fran{\c{c}}ois Fages}, editor = {Luca Bortolussi and Guido Sanguinetti}, title = {On Chemical Reaction Network Design by a Nested Evolution Algorithm}, booktitle = {Computational Methods in Systems Biology - 17th International Conference, {CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11773}, pages = {78--95}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-31304-3\_5}, doi = {10.1007/978-3-030-31304-3\_5}, timestamp = {Sat, 19 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/DegrandHF19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/GoldfederK19, author = {Judah Goldfeder and Hillel Kugler}, editor = {Luca Bortolussi and Guido Sanguinetti}, title = {{BRE:} {IN} - {A} Backend for Reasoning About Interaction Networks with Temporal Logic}, booktitle = {Computational Methods in Systems Biology - 17th International Conference, {CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11773}, pages = {289--295}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-31304-3\_15}, doi = {10.1007/978-3-030-31304-3\_15}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/GoldfederK19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/GuetHIPS19, author = {Calin C. Guet and Thomas A. Henzinger and Claudia Igler and Tatjana Petrov and Ali Sezgin}, editor = {Luca Bortolussi and Guido Sanguinetti}, title = {Transient Memory in Gene Regulation}, booktitle = {Computational Methods in Systems Biology - 17th International Conference, {CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11773}, pages = {155--187}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-31304-3\_9}, doi = {10.1007/978-3-030-31304-3\_9}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/GuetHIPS19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/GuptaKS19, author = {Ankit Gupta and Mustafa Khammash and Guido Sanguinetti}, editor = {Luca Bortolussi and Guido Sanguinetti}, title = {Bayesian Parameter Estimation for Stochastic Reaction Networks from Steady-State Observations}, booktitle = {Computational Methods in Systems Biology - 17th International Conference, {CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11773}, pages = {342--346}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-31304-3\_23}, doi = {10.1007/978-3-030-31304-3\_23}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/GuptaKS19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/HajnalNPS19, author = {Matej Hajnal and Morgane Nouvian and Tatjana Petrov and David Safr{\'{a}}nek}, editor = {Luca Bortolussi and Guido Sanguinetti}, title = {Data-Informed Parameter Synthesis for Population Markov Chains}, booktitle = {Computational Methods in Systems Biology - 17th International Conference, {CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11773}, pages = {383--386}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-31304-3\_32}, doi = {10.1007/978-3-030-31304-3\_32}, timestamp = {Tue, 17 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/HajnalNPS19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/HarmerO19, author = {Russ Harmer and Eugenia Oshurko}, editor = {Luca Bortolussi and Guido Sanguinetti}, title = {KAMIStudio: An Environment for Biocuration of Cellular Signalling Knowledge}, booktitle = {Computational Methods in Systems Biology - 17th International Conference, {CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11773}, pages = {322--328}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-31304-3\_20}, doi = {10.1007/978-3-030-31304-3\_20}, timestamp = {Mon, 23 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/HarmerO19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/InnocentiniAHR19, author = {Guilherme C. P. Innocentini and Fernando Antoneli and Arran Hodgkinson and Ovidiu Radulescu}, editor = {Luca Bortolussi and Guido Sanguinetti}, title = {Effective Computational Methods for Hybrid Stochastic Gene Networks}, booktitle = {Computational Methods in Systems Biology - 17th International Conference, {CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11773}, pages = {60--77}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-31304-3\_4}, doi = {10.1007/978-3-030-31304-3\_4}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/InnocentiniAHR19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/LampSBNF19, author = {Josephine Lamp and Simone Silvetti and Marc D. Breton and Laura Nenzi and Lu Feng}, editor = {Luca Bortolussi and Guido Sanguinetti}, title = {A Logic-Based Learning Approach to Explore Diabetes Patient Behaviors}, booktitle = {Computational Methods in Systems Biology - 17th International Conference, {CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11773}, pages = {188--206}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-31304-3\_10}, doi = {10.1007/978-3-030-31304-3\_10}, timestamp = {Wed, 22 Dec 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/LampSBNF19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/LortonPRW19, author = {Christopher W. Lorton and Joshua L. Proctor and Min K. Roh and Philip A. Welkhoff}, editor = {Luca Bortolussi and Guido Sanguinetti}, title = {Compartmental Modeling Software: {A} Fast, Discrete Stochastic Framework for Biochemical and Epidemiological Simulation}, booktitle = {Computational Methods in Systems Biology - 17th International Conference, {CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11773}, pages = {308--314}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-31304-3\_18}, doi = {10.1007/978-3-030-31304-3\_18}, timestamp = {Tue, 17 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/LortonPRW19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/MandonSH0P19, author = {Hugues Mandon and Cui Su and Stefan Haar and Jun Pang and Lo{\"{\i}}c Paulev{\'{e}}}, editor = {Luca Bortolussi and Guido Sanguinetti}, title = {Sequential Reprogramming of Boolean Networks Made Practical}, booktitle = {Computational Methods in Systems Biology - 17th International Conference, {CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11773}, pages = {3--19}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-31304-3\_1}, doi = {10.1007/978-3-030-31304-3\_1}, timestamp = {Tue, 17 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/MandonSH0P19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/MartinelliGSF19, author = {Julien Martinelli and Jeremy Grignard and Sylvain Soliman and Fran{\c{c}}ois Fages}, editor = {Luca Bortolussi and Guido Sanguinetti}, title = {On Inferring Reactions from Data Time Series by a Statistical Learning Greedy Heuristics}, booktitle = {Computational Methods in Systems Biology - 17th International Conference, {CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11773}, pages = {352--355}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-31304-3\_25}, doi = {10.1007/978-3-030-31304-3\_25}, timestamp = {Tue, 17 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/MartinelliGSF19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/NowickaS19, author = {Melania Nowicka and Heike Siebert}, editor = {Luca Bortolussi and Guido Sanguinetti}, title = {Designing Distributed Cell Classifier Circuits Using a Genetic Algorithm}, booktitle = {Computational Methods in Systems Biology - 17th International Conference, {CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11773}, pages = {96--119}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-31304-3\_6}, doi = {10.1007/978-3-030-31304-3\_6}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/NowickaS19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/OcalGS19, author = {Kaan {\"{O}}cal and Ramon Grima and Guido Sanguinetti}, editor = {Luca Bortolussi and Guido Sanguinetti}, title = {Wasserstein Distances for Estimating Parameters in Stochastic Reaction Networks}, booktitle = {Computational Methods in Systems Biology - 17th International Conference, {CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11773}, pages = {347--351}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-31304-3\_24}, doi = {10.1007/978-3-030-31304-3\_24}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/OcalGS19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/PardoID19, author = {J{\'{e}}r{\'{e}}mie Pardo and Sergiu Ivanov and Franck Delaplace}, editor = {Luca Bortolussi and Guido Sanguinetti}, title = {Sequential Reprogramming of Biological Network Fate}, booktitle = {Computational Methods in Systems Biology - 17th International Conference, {CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11773}, pages = {20--41}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-31304-3\_2}, doi = {10.1007/978-3-030-31304-3\_2}, timestamp = {Thu, 19 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/PardoID19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Perez-VeronaTV19, author = {Isabel Cristina P{\'{e}}rez{-}Verona and Mirco Tribastone and Andrea Vandin}, editor = {Luca Bortolussi and Guido Sanguinetti}, title = {A Large-Scale Assessment of Exact Model Reduction in the BioModels Repository}, booktitle = {Computational Methods in Systems Biology - 17th International Conference, {CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11773}, pages = {248--265}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-31304-3\_13}, doi = {10.1007/978-3-030-31304-3\_13}, timestamp = {Fri, 27 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/Perez-VeronaTV19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/PihoMBRH19, author = {Paul Piho and Filip Margetiny and Ezio Bartocci and Richard R. Ribchester and Jane Hillston}, editor = {Luca Bortolussi and Guido Sanguinetti}, title = {Extending a Hodgkin-Huxley Model for Larval Drosophila Muscle Excitability via Particle Swarm Fitting}, booktitle = {Computational Methods in Systems Biology - 17th International Conference, {CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11773}, pages = {120--139}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-31304-3\_7}, doi = {10.1007/978-3-030-31304-3\_7}, timestamp = {Fri, 27 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/PihoMBRH19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/PribylovaL19, author = {Lenka Pribylov{\'{a}} and Barbora Losov{\'{a}}}, editor = {Luca Bortolussi and Guido Sanguinetti}, title = {Symmetry Breaking for {GATA-1/PU.1} Model}, booktitle = {Computational Methods in Systems Biology - 17th International Conference, {CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11773}, pages = {360--363}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-31304-3\_27}, doi = {10.1007/978-3-030-31304-3\_27}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/PribylovaL19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/SaccomaniBAd19, author = {Maria Pia Saccomani and Giuseppina Bellu and Stefania Audoly and Leontina D'Angi{\`{o}}}, editor = {Luca Bortolussi and Guido Sanguinetti}, title = {A New Version of {DAISY} to Test Structural Identifiability of Biological Models}, booktitle = {Computational Methods in Systems Biology - 17th International Conference, {CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11773}, pages = {329--334}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-31304-3\_21}, doi = {10.1007/978-3-030-31304-3\_21}, timestamp = {Mon, 23 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/SaccomaniBAd19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/SafranekTBVPDPP19, author = {David Safr{\'{a}}nek and Matej Troj{\'{a}}k and Vojtech Bruza and Tom{\'{a}}s Vejpustek and Jan Papousek and Martin Demko and Samuel Pastva and Ales Pejznoch and Lubos Brim}, editor = {Luca Bortolussi and Guido Sanguinetti}, title = {Barbaric Robustness Monitoring Revisited for STL* in Parasim}, booktitle = {Computational Methods in Systems Biology - 17th International Conference, {CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11773}, pages = {356--359}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-31304-3\_26}, doi = {10.1007/978-3-030-31304-3\_26}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/SafranekTBVPDPP19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/SpaccasassiYPD19, author = {Carlo Spaccasassi and Boyan Yordanov and Andrew Phillips and Neil Dalchau}, editor = {Luca Bortolussi and Guido Sanguinetti}, title = {Fast Enumeration of Non-isomorphic Chemical Reaction Networks}, booktitle = {Computational Methods in Systems Biology - 17th International Conference, {CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11773}, pages = {224--247}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-31304-3\_12}, doi = {10.1007/978-3-030-31304-3\_12}, timestamp = {Tue, 17 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/SpaccasassiYPD19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/SuP019, author = {Cui Su and Soumya Paul and Jun Pang}, editor = {Luca Bortolussi and Guido Sanguinetti}, title = {Scalable Control of Asynchronous Boolean Networks}, booktitle = {Computational Methods in Systems Biology - 17th International Conference, {CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11773}, pages = {364--367}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-31304-3\_28}, doi = {10.1007/978-3-030-31304-3\_28}, timestamp = {Tue, 17 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/SuP019.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/VertesAAKPSBKNP19, author = {Akos Vertes and Albert{-}Baskar Arul and Peter Avar and Andrew R. Korte and Lida Parvin and Ziad J. Sahab and Deborah I. Bunin and Merrill Knapp and Denise Nishita and Andrew Poggio and Mark{-}Oliver Stehr and Carolyn L. Talcott and Brian M. Davis and Christine A. Morton and Christopher J. Sevinsky and Maria I. Zavodszky}, editor = {Luca Bortolussi and Guido Sanguinetti}, title = {Transcriptional Response of {SK-N-AS} Cells to Methamidophos (Extended Abstract)}, booktitle = {Computational Methods in Systems Biology - 17th International Conference, {CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11773}, pages = {368--372}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-31304-3\_29}, doi = {10.1007/978-3-030-31304-3\_29}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/VertesAAKPSBKNP19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/cmsb/2019, editor = {Luca Bortolussi and Guido Sanguinetti}, title = {Computational Methods in Systems Biology - 17th International Conference, {CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11773}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-31304-3}, doi = {10.1007/978-3-030-31304-3}, isbn = {978-3-030-31303-6}, timestamp = {Tue, 17 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/2019.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/AbateCKLY18, author = {Alessandro Abate and Luca Cardelli and Marta Kwiatkowska and Luca Laurenti and Boyan Yordanov}, editor = {Milan Ceska and David Safr{\'{a}}nek}, title = {Experimental Biological Protocols with Formal Semantics}, booktitle = {Computational Methods in Systems Biology - 16th International Conference, {CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11095}, pages = {165--182}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-319-99429-1\_10}, doi = {10.1007/978-3-319-99429-1\_10}, timestamp = {Wed, 30 Oct 2019 16:34:37 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/AbateCKLY18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BokesHS18, author = {Pavol Bokes and Michal Hojcka and Abhyudai Singh}, editor = {Milan Ceska and David Safr{\'{a}}nek}, title = {Buffering Gene Expression Noise by MicroRNA Based Feedforward Regulation}, booktitle = {Computational Methods in Systems Biology - 16th International Conference, {CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11095}, pages = {129--145}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-319-99429-1\_8}, doi = {10.1007/978-3-319-99429-1\_8}, timestamp = {Sun, 25 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BokesHS18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BortolussiP18, author = {Luca Bortolussi and Luca Palmieri}, editor = {Milan Ceska and David Safr{\'{a}}nek}, title = {Deep Abstractions of Chemical Reaction Networks}, booktitle = {Computational Methods in Systems Biology - 16th International Conference, {CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11095}, pages = {21--38}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-319-99429-1\_2}, doi = {10.1007/978-3-319-99429-1\_2}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/BortolussiP18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BoutillierCCFLT18, author = {Pierre Boutillier and Ferdinanda Camporesi and Jean Coquet and J{\'{e}}r{\^{o}}me Feret and Kim Quy{\^{e}}n L{\'{y}} and Nathalie Th{\'{e}}ret and Pierre Vignet}, editor = {Milan Ceska and David Safr{\'{a}}nek}, title = {KaSa: {A} Static Analyzer for Kappa}, booktitle = {Computational Methods in Systems Biology - 16th International Conference, {CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11095}, pages = {285--291}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-319-99429-1\_17}, doi = {10.1007/978-3-319-99429-1\_17}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BoutillierCCFLT18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BreikCDHS18, author = {Keenan Breik and Cameron T. Chalk and David Doty and David Haley and David Soloveichik}, editor = {Milan Ceska and David Safr{\'{a}}nek}, title = {Programming Substrate-Independent Kinetic Barriers with Thermodynamic Binding Networks}, booktitle = {Computational Methods in Systems Biology - 16th International Conference, {CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11095}, pages = {203--219}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-319-99429-1\_12}, doi = {10.1007/978-3-319-99429-1\_12}, timestamp = {Mon, 16 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BreikCDHS18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/ChalkKRS18, author = {Cameron T. Chalk and Niels Kornerup and Wyatt Reeves and David Soloveichik}, editor = {Milan Ceska and David Safr{\'{a}}nek}, title = {Composable Rate-Independent Computation in Continuous Chemical Reaction Networks}, booktitle = {Computational Methods in Systems Biology - 16th International Conference, {CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11095}, pages = {256--273}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-319-99429-1\_15}, doi = {10.1007/978-3-319-99429-1\_15}, timestamp = {Mon, 27 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/ChalkKRS18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/DuttaKS18, author = {Souradeep Dutta and Taisa Kushner and Sriram Sankaranarayanan}, editor = {Milan Ceska and David Safr{\'{a}}nek}, title = {Robust Data-Driven Control of Artificial Pancreas Systems Using Neural Networks}, booktitle = {Computational Methods in Systems Biology - 16th International Conference, {CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11095}, pages = {183--202}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-319-99429-1\_11}, doi = {10.1007/978-3-319-99429-1\_11}, timestamp = {Fri, 06 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/DuttaKS18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/FagesS18, author = {Fran{\c{c}}ois Fages and Sylvain Soliman}, editor = {Milan Ceska and David Safr{\'{a}}nek}, title = {On Robustness Computation and Optimization in {BIOCHAM-4}}, booktitle = {Computational Methods in Systems Biology - 16th International Conference, {CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11095}, pages = {292--299}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-319-99429-1\_18}, doi = {10.1007/978-3-319-99429-1\_18}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/FagesS18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/FeigelmanWTMH18, author = {Justin Feigelman and Daniel Weindl and Fabian J. Theis and Carsten Marr and Jan Hasenauer}, editor = {Milan Ceska and David Safr{\'{a}}nek}, title = {{LNA++:} Linear Noise Approximation with First and Second Order Sensitivities}, booktitle = {Computational Methods in Systems Biology - 16th International Conference, {CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11095}, pages = {300--306}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-319-99429-1\_19}, doi = {10.1007/978-3-319-99429-1\_19}, timestamp = {Mon, 27 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/FeigelmanWTMH18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/GuptaMS18, author = {Ashutosh Gupta and Somya Mani and Ankit Shukla}, editor = {Milan Ceska and David Safr{\'{a}}nek}, title = {Synthesis for Vesicle Traffic Systems}, booktitle = {Computational Methods in Systems Biology - 16th International Conference, {CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11095}, pages = {93--110}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-319-99429-1\_6}, doi = {10.1007/978-3-319-99429-1\_6}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/GuptaMS18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/GuvenWWEH18, author = {Emine G{\"{u}}ven and Michael J. Wester and Bridget S. Wilson and Jeremy S. Edwards and {\'{A}}d{\'{a}}m M. Hal{\'{a}}sz}, editor = {Milan Ceska and David Safr{\'{a}}nek}, title = {Characterization of the Experimentally Observed Clustering of {VEGF} Receptors}, booktitle = {Computational Methods in Systems Biology - 16th International Conference, {CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11095}, pages = {75--92}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-319-99429-1\_5}, doi = {10.1007/978-3-319-99429-1\_5}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/GuvenWWEH18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/KuglerDY18, author = {Hillel Kugler and Sara{-}Jane Dunn and Boyan Yordanov}, editor = {Milan Ceska and David Safr{\'{a}}nek}, title = {Formal Analysis of Network Motifs}, booktitle = {Computational Methods in Systems Biology - 16th International Conference, {CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11095}, pages = {111--128}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-319-99429-1\_7}, doi = {10.1007/978-3-319-99429-1\_7}, timestamp = {Sat, 19 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/KuglerDY18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/LaurentMBYF18, author = {Jonathan Laurent and H{\'{e}}ctor F. Medina{-}Abarca and Pierre Boutillier and Jean Yang and Walter Fontana}, editor = {Milan Ceska and David Safr{\'{a}}nek}, title = {A Trace Query Language for Rule-Based Models}, booktitle = {Computational Methods in Systems Biology - 16th International Conference, {CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11095}, pages = {220--237}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-319-99429-1\_13}, doi = {10.1007/978-3-319-99429-1\_13}, timestamp = {Mon, 27 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/LaurentMBYF18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/MizeraP0Y18, author = {Andrzej Mizera and Jun Pang and Hongyang Qu and Qixia Yuan}, editor = {Milan Ceska and David Safr{\'{a}}nek}, title = {{ASSA-PBN} 3.0: Analysing Context-Sensitive Probabilistic Boolean Networks}, booktitle = {Computational Methods in Systems Biology - 16th International Conference, {CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11095}, pages = {277--284}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-319-99429-1\_16}, doi = {10.1007/978-3-319-99429-1\_16}, timestamp = {Sat, 31 Aug 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/MizeraP0Y18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Modrak18, author = {Martin Modr{\'{a}}k}, editor = {Milan Ceska and David Safr{\'{a}}nek}, title = {Reparametrizing the Sigmoid Model of Gene Regulation for Bayesian Inference}, booktitle = {Computational Methods in Systems Biology - 16th International Conference, {CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11095}, pages = {309--312}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-319-99429-1\_20}, doi = {10.1007/978-3-319-99429-1\_20}, timestamp = {Thu, 13 Sep 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/Modrak18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/OliveiraBSKR18, author = {Samuel M. D. Oliveira and Mohamed N. M. Bahrudeen and Sofia Startceva and Vinodh Kandavalli and Andre S. Ribeiro}, editor = {Milan Ceska and David Safr{\'{a}}nek}, title = {Modeling and Engineering Promoters with Pre-defined {RNA} Production Dynamics in Escherichia Coli}, booktitle = {Computational Methods in Systems Biology - 16th International Conference, {CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11095}, pages = {3--20}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-319-99429-1\_1}, doi = {10.1007/978-3-319-99429-1\_1}, timestamp = {Thu, 13 Sep 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/OliveiraBSKR18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/PaulPS18, author = {Soumya Paul and Jun Pang and Cui Su}, editor = {Milan Ceska and David Safr{\'{a}}nek}, title = {On the Full Control of Boolean Networks}, booktitle = {Computational Methods in Systems Biology - 16th International Conference, {CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11095}, pages = {313--317}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-319-99429-1\_21}, doi = {10.1007/978-3-319-99429-1\_21}, timestamp = {Sat, 31 Aug 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/PaulPS18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/RadwanS18, author = {Golestan Sally Radwan and Hugh P. Shanahan}, editor = {Milan Ceska and David Safr{\'{a}}nek}, title = {Systems Metagenomics: Applying Systems Biology Thinking to Human Microbiome Analysis}, booktitle = {Computational Methods in Systems Biology - 16th International Conference, {CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11095}, pages = {318--321}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-319-99429-1\_22}, doi = {10.1007/978-3-319-99429-1\_22}, timestamp = {Mon, 03 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/RadwanS18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/RazzaqK0SBG18, author = {Misbah Razzaq and Roland Kaminski and Javier Romero and Torsten Schaub and J{\'{e}}r{\'{e}}mie Bourdon and Carito Guziolowski}, editor = {Milan Ceska and David Safr{\'{a}}nek}, title = {Computing Diverse Boolean Networks from Phosphoproteomic Time Series Data}, booktitle = {Computational Methods in Systems Biology - 16th International Conference, {CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11095}, pages = {59--74}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-319-99429-1\_4}, doi = {10.1007/978-3-319-99429-1\_4}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/RazzaqK0SBG18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/RevellZ18, author = {Jeremy Revell and Paolo Zuliani}, editor = {Milan Ceska and David Safr{\'{a}}nek}, title = {Stochastic Rate Parameter Inference Using the Cross-Entropy Method}, booktitle = {Computational Methods in Systems Biology - 16th International Conference, {CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11095}, pages = {146--164}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-319-99429-1\_9}, doi = {10.1007/978-3-319-99429-1\_9}, timestamp = {Wed, 03 Oct 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/RevellZ18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/SelfGH18, author = {Timothy Self and David R. Gilbert and Monika Heiner}, editor = {Milan Ceska and David Safr{\'{a}}nek}, title = {Derivation of a Biomass Proxy for Dynamic Analysis of Whole Genome Metabolic Models}, booktitle = {Computational Methods in Systems Biology - 16th International Conference, {CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11095}, pages = {39--58}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-319-99429-1\_3}, doi = {10.1007/978-3-319-99429-1\_3}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/SelfGH18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/VertesAAKLNPSHS18, author = {Akos Vertes and Albert{-}Baskar Arul and Peter Avar and Andrew R. Korte and Hang Li and Peter Nemes and Lida Parvin and Sylwia Stopka and Sunil Hwang and Ziad J. Sahab and Linwen Zhang and Deborah I. Bunin and Merrill Knapp and Andrew Poggio and Mark{-}Oliver Stehr and Carolyn L. Talcott and Brian M. Davis and Sean R. Dinn and Christine A. Morton and Christopher J. Sevinsky and Maria I. Zavodszky}, editor = {Milan Ceska and David Safr{\'{a}}nek}, title = {Inferring Mechanism of Action of an Unknown Compound from Time Series Omics Data}, booktitle = {Computational Methods in Systems Biology - 16th International Conference, {CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11095}, pages = {238--255}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-319-99429-1\_14}, doi = {10.1007/978-3-319-99429-1\_14}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/VertesAAKLNPSHS18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/cmsb/2018, editor = {Milan Ceska and David Safr{\'{a}}nek}, title = {Computational Methods in Systems Biology - 16th International Conference, {CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11095}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-319-99429-1}, doi = {10.1007/978-3-319-99429-1}, isbn = {978-3-319-99428-4}, timestamp = {Wed, 30 Oct 2019 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/2018.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/AbbasRBSG17, author = {Houssam Abbas and Al{\"{e}}na Rodionova and Ezio Bartocci and Scott A. Smolka and Radu Grosu}, editor = {J{\'{e}}r{\^{o}}me Feret and Heinz Koeppl}, title = {Quantitative Regular Expressions for Arrhythmia Detection Algorithms}, booktitle = {Computational Methods in Systems Biology - 15th International Conference, {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {10545}, pages = {23--39}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-67471-1\_2}, doi = {10.1007/978-3-319-67471-1\_2}, timestamp = {Mon, 18 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/AbbasRBSG17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BarnatBBDHPS17, author = {Jiri Barnat and Nikola Benes and Lubos Brim and Martin Demko and Matej Hajnal and Samuel Pastva and David Safr{\'{a}}nek}, editor = {J{\'{e}}r{\^{o}}me Feret and Heinz Koeppl}, title = {Detecting Attractors in Biological Models with Uncertain Parameters}, booktitle = {Computational Methods in Systems Biology - 15th International Conference, {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {10545}, pages = {40--56}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-67471-1\_3}, doi = {10.1007/978-3-319-67471-1\_3}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BarnatBBDHPS17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BianeD17, author = {C{\'{e}}lia Biane and Franck Delaplace}, editor = {J{\'{e}}r{\^{o}}me Feret and Heinz Koeppl}, title = {Abduction Based Drug Target Discovery Using Boolean Control Network}, booktitle = {Computational Methods in Systems Biology - 15th International Conference, {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {10545}, pages = {57--73}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-67471-1\_4}, doi = {10.1007/978-3-319-67471-1\_4}, timestamp = {Mon, 18 Sep 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BianeD17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BobaH17, author = {Patrick Boba and Kay Hamacher}, editor = {J{\'{e}}r{\^{o}}me Feret and Heinz Koeppl}, title = {TransferEntropyPT: An {R} Package to Assess Transfer Entropies via Permutation Tests}, booktitle = {Computational Methods in Systems Biology - 15th International Conference, {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {10545}, pages = {285--290}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-67471-1\_17}, doi = {10.1007/978-3-319-67471-1\_17}, timestamp = {Mon, 18 Sep 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BobaH17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/CamporesiFL17, author = {Ferdinanda Camporesi and J{\'{e}}r{\^{o}}me Feret and Kim Quy{\^{e}}n L{\'{y}}}, editor = {J{\'{e}}r{\^{o}}me Feret and Heinz Koeppl}, title = {KaDE: {A} Tool to Compile Kappa Rules into (Reduced) {ODE} Models}, booktitle = {Computational Methods in Systems Biology - 15th International Conference, {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {10545}, pages = {291--299}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-67471-1\_18}, doi = {10.1007/978-3-319-67471-1\_18}, timestamp = {Mon, 18 Sep 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/CamporesiFL17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/CarcanoFS17, author = {Arthur Carcano and Fran{\c{c}}ois Fages and Sylvain Soliman}, editor = {J{\'{e}}r{\^{o}}me Feret and Heinz Koeppl}, title = {Probably Approximately Correct Learning of Regulatory Networks from Time-Series Data}, booktitle = {Computational Methods in Systems Biology - 15th International Conference, {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {10545}, pages = {74--90}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-67471-1\_5}, doi = {10.1007/978-3-319-67471-1\_5}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/CarcanoFS17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/CoquetTLD17, author = {Jean Coquet and Nathalie Th{\'{e}}ret and Vincent Legagneux and Olivier Dameron}, editor = {J{\'{e}}r{\^{o}}me Feret and Heinz Koeppl}, title = {Identifying Functional Families of Trajectories in Biological Pathways by Soft Clustering: Application to TGF-{\(\beta\)} Signaling}, booktitle = {Computational Methods in Systems Biology - 15th International Conference, {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {10545}, pages = {91--107}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-67471-1\_6}, doi = {10.1007/978-3-319-67471-1\_6}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/CoquetTLD17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/CumminsGHM17, author = {Bree Cummins and Tom{\'{a}}s Gedeon and Shaun Harker and Konstantin Mischaikow}, editor = {J{\'{e}}r{\^{o}}me Feret and Heinz Koeppl}, title = {Database of Dynamic Signatures Generated by Regulatory Networks {(DSGRN)}}, booktitle = {Computational Methods in Systems Biology - 15th International Conference, {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {10545}, pages = {300--308}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-67471-1\_19}, doi = {10.1007/978-3-319-67471-1\_19}, timestamp = {Mon, 18 Sep 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/CumminsGHM17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/FagesGBP17, author = {Fran{\c{c}}ois Fages and Guillaume Le Guludec and Olivier Bournez and Amaury Pouly}, editor = {J{\'{e}}r{\^{o}}me Feret and Heinz Koeppl}, title = {Strong Turing Completeness of Continuous Chemical Reaction Networks and Compilation of Mixed Analog-Digital Programs}, booktitle = {Computational Methods in Systems Biology - 15th International Conference, {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {10545}, pages = {108--127}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-67471-1\_7}, doi = {10.1007/978-3-319-67471-1\_7}, timestamp = {Mon, 18 Sep 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/FagesGBP17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/HarmerCLO17, author = {Russ Harmer and Yves{-}Stan Le Cornec and S{\'{e}}bastien L{\'{e}}gar{\'{e}} and Ievgeniia Oshurko}, editor = {J{\'{e}}r{\^{o}}me Feret and Heinz Koeppl}, title = {Bio-Curation for Cellular Signalling: The {KAMI} Project}, booktitle = {Computational Methods in Systems Biology - 15th International Conference, {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {10545}, pages = {3--19}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-67471-1\_1}, doi = {10.1007/978-3-319-67471-1\_1}, timestamp = {Mon, 18 Sep 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/HarmerCLO17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/KlingerH17, author = {Emmanuel Klinger and Jan Hasenauer}, editor = {J{\'{e}}r{\^{o}}me Feret and Heinz Koeppl}, title = {A Scheme for Adaptive Selection of Population Sizes in Approximate Bayesian Computation - Sequential Monte Carlo}, booktitle = {Computational Methods in Systems Biology - 15th International Conference, {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {10545}, pages = {128--144}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-67471-1\_8}, doi = {10.1007/978-3-319-67471-1\_8}, timestamp = {Mon, 18 Sep 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/KlingerH17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/LiangWTRSM17, author = {Kai{-}Wen Liang and Qinsi Wang and Cheryl Telmer and Divyaa Ravichandran and Peter Spirtes and Natasa Miskov{-}Zivanov}, editor = {J{\'{e}}r{\^{o}}me Feret and Heinz Koeppl}, title = {Methods to Expand Cell Signaling Models Using Automated Reading and Model Checking}, booktitle = {Computational Methods in Systems Biology - 15th International Conference, {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {10545}, pages = {145--159}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-67471-1\_9}, doi = {10.1007/978-3-319-67471-1\_9}, timestamp = {Mon, 18 Sep 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/LiangWTRSM17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/LuckGWW17, author = {Alexander L{\"{u}}ck and Pascal Giehr and J{\"{o}}rn Walter and Verena Wolf}, editor = {J{\'{e}}r{\^{o}}me Feret and Heinz Koeppl}, title = {A Stochastic Model for the Formation of Spatial Methylation Patterns}, booktitle = {Computational Methods in Systems Biology - 15th International Conference, {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {10545}, pages = {160--178}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-67471-1\_10}, doi = {10.1007/978-3-319-67471-1\_10}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/LuckGWW17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/MandonHP17, author = {Hugues Mandon and Stefan Haar and Lo{\"{\i}}c Paulev{\'{e}}}, editor = {J{\'{e}}r{\^{o}}me Feret and Heinz Koeppl}, title = {Temporal Reprogramming of Boolean Networks}, booktitle = {Computational Methods in Systems Biology - 15th International Conference, {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {10545}, pages = {179--195}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-67471-1\_11}, doi = {10.1007/978-3-319-67471-1\_11}, timestamp = {Mon, 18 Sep 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/MandonHP17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/MiraglioBCF17, author = {Benjamin Miraglio and Gilles Bernot and Jean{-}Paul Comet and Christine Risso{-}de Faverney}, editor = {J{\'{e}}r{\^{o}}me Feret and Heinz Koeppl}, title = {Detecting Toxicity Pathways with a Formal Framework Based on Equilibrium Changes}, booktitle = {Computational Methods in Systems Biology - 15th International Conference, {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {10545}, pages = {196--213}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-67471-1\_12}, doi = {10.1007/978-3-319-67471-1\_12}, timestamp = {Mon, 18 Sep 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/MiraglioBCF17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/PaolettiLSL17, author = {Nicola Paoletti and Kin Sum Liu and Scott A. Smolka and Shan Lin}, editor = {J{\'{e}}r{\^{o}}me Feret and Heinz Koeppl}, title = {Data-Driven Robust Control for Type 1 Diabetes Under Meal and Exercise Uncertainties}, booktitle = {Computational Methods in Systems Biology - 15th International Conference, {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {10545}, pages = {214--232}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-67471-1\_13}, doi = {10.1007/978-3-319-67471-1\_13}, timestamp = {Wed, 10 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/PaolettiLSL17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Pauleve17, author = {Lo{\"{\i}}c Paulev{\'{e}}}, editor = {J{\'{e}}r{\^{o}}me Feret and Heinz Koeppl}, title = {Pint: {A} Static Analyzer for Transient Dynamics of Qualitative Networks with IPython Interface}, booktitle = {Computational Methods in Systems Biology - 15th International Conference, {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {10545}, pages = {309--316}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-67471-1\_20}, doi = {10.1007/978-3-319-67471-1\_20}, timestamp = {Mon, 18 Sep 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/Pauleve17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/SchwiegerS17, author = {Robert Schwieger and Heike Siebert}, editor = {J{\'{e}}r{\^{o}}me Feret and Heinz Koeppl}, title = {Graph Representations of Monotonic Boolean Model Pools}, booktitle = {Computational Methods in Systems Biology - 15th International Conference, {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {10545}, pages = {233--248}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-67471-1\_14}, doi = {10.1007/978-3-319-67471-1\_14}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/SchwiegerS17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/TalcottK17, author = {Carolyn L. Talcott and Merrill Knapp}, editor = {J{\'{e}}r{\^{o}}me Feret and Heinz Koeppl}, title = {Explaining Response to Drugs Using Pathway Logic}, booktitle = {Computational Methods in Systems Biology - 15th International Conference, {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {10545}, pages = {249--264}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-67471-1\_15}, doi = {10.1007/978-3-319-67471-1\_15}, timestamp = {Mon, 18 Sep 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/TalcottK17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/ZhouRWT17, author = {Jun Zhou and R. Ramanathan and Weng{-}Fai Wong and P. S. Thiagarajan}, editor = {J{\'{e}}r{\^{o}}me Feret and Heinz Koeppl}, title = {Automated Property Synthesis of ODEs Based Bio-pathways Models}, booktitle = {Computational Methods in Systems Biology - 15th International Conference, {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {10545}, pages = {265--282}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-67471-1\_16}, doi = {10.1007/978-3-319-67471-1\_16}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/ZhouRWT17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/cmsb/2017, editor = {J{\'{e}}r{\^{o}}me Feret and Heinz Koeppl}, title = {Computational Methods in Systems Biology - 15th International Conference, {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {10545}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-67471-1}, doi = {10.1007/978-3-319-67471-1}, isbn = {978-3-319-67470-4}, timestamp = {Tue, 14 May 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/2017.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/AbdallahRMRI16, author = {Emna Ben Abdallah and Tony Ribeiro and Morgan Magnin and Olivier F. Roux and Katsumi Inoue}, editor = {Ezio Bartocci and Pietro Li{\`{o}} and Nicola Paoletti}, title = {Inference of Delayed Biological Regulatory Networks from Time Series Data}, booktitle = {Computational Methods in Systems Biology - 14th International Conference, {CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9859}, pages = {30--48}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-45177-0\_3}, doi = {10.1007/978-3-319-45177-0\_3}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/AbdallahRMRI16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BackenkohlerBW16, author = {Michael Backenk{\"{o}}hler and Luca Bortolussi and Verena Wolf}, editor = {Ezio Bartocci and Pietro Li{\`{o}} and Nicola Paoletti}, title = {Generalized Method of Moments for Stochastic Reaction Networks in Equilibrium}, booktitle = {Computational Methods in Systems Biology - 14th International Conference, {CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9859}, pages = {15--29}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-45177-0\_2}, doi = {10.1007/978-3-319-45177-0\_2}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/BackenkohlerBW16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/CaravagnaBS16, author = {Giulio Caravagna and Luca Bortolussi and Guido Sanguinetti}, editor = {Ezio Bartocci and Pietro Li{\`{o}} and Nicola Paoletti}, title = {Matching Models Across Abstraction Levels with Gaussian Processes}, booktitle = {Computational Methods in Systems Biology - 14th International Conference, {CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9859}, pages = {49--66}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-45177-0\_4}, doi = {10.1007/978-3-319-45177-0\_4}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/CaravagnaBS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/CardelliKL16, author = {Luca Cardelli and Marta Kwiatkowska and Luca Laurenti}, editor = {Ezio Bartocci and Pietro Li{\`{o}} and Nicola Paoletti}, title = {A Stochastic Hybrid Approximation for Chemical Kinetics Based on the Linear Noise Approximation}, booktitle = {Computational Methods in Systems Biology - 14th International Conference, {CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9859}, pages = {147--167}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-45177-0\_10}, doi = {10.1007/978-3-319-45177-0\_10}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/CardelliKL16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/CzeizlerGCKP16, author = {Eugen Czeizler and Cristian Gratie and Wu Kai Chiu and Krishna Kanhaiya and Ion Petre}, editor = {Ezio Bartocci and Pietro Li{\`{o}} and Nicola Paoletti}, title = {Target Controllability of Linear Networks}, booktitle = {Computational Methods in Systems Biology - 14th International Conference, {CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9859}, pages = {67--81}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-45177-0\_5}, doi = {10.1007/978-3-319-45177-0\_5}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/CzeizlerGCKP16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/DemkoBBPS16, author = {Martin Demko and Nikola Benes and Lubos Brim and Samuel Pastva and David Safr{\'{a}}nek}, editor = {Ezio Bartocci and Pietro Li{\`{o}} and Nicola Paoletti}, title = {High-Performance Symbolic Parameter Synthesis of Biological Models: {A} Case Study}, booktitle = {Computational Methods in Systems Biology - 14th International Conference, {CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9859}, pages = {82--97}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-45177-0\_6}, doi = {10.1007/978-3-319-45177-0\_6}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/DemkoBBPS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Despeyroux16, author = {Jo{\"{e}}lle Despeyroux}, editor = {Ezio Bartocci and Pietro Li{\`{o}} and Nicola Paoletti}, title = {(Mathematical) Logic for Systems Biology (Invited Paper)}, booktitle = {Computational Methods in Systems Biology - 14th International Conference, {CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9859}, pages = {3--12}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-45177-0\_1}, doi = {10.1007/978-3-319-45177-0\_1}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/Despeyroux16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/FagesMRS16, author = {Fran{\c{c}}ois Fages and Thierry Martinez and David A. Rosenblueth and Sylvain Soliman}, editor = {Ezio Bartocci and Pietro Li{\`{o}} and Nicola Paoletti}, title = {Influence Systems vs Reaction Systems}, booktitle = {Computational Methods in Systems Biology - 14th International Conference, {CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9859}, pages = {98--115}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-45177-0\_7}, doi = {10.1007/978-3-319-45177-0\_7}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/FagesMRS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/FeretL16, author = {J{\'{e}}r{\^{o}}me Feret and Kim Quy{\^{e}}n L{\'{y}}}, editor = {Ezio Bartocci and Pietro Li{\`{o}} and Nicola Paoletti}, title = {Local Traces: An Over-Approximation of the Behaviour of the Proteins in Rule-Based Models}, booktitle = {Computational Methods in Systems Biology - 14th International Conference, {CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9859}, pages = {116--131}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-45177-0\_8}, doi = {10.1007/978-3-319-45177-0\_8}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/FeretL16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/IslamBKCCFGJS16, author = {Md. Ariful Islam and Greg Byrne and Soonho Kong and Edmund M. Clarke and Rance Cleaveland and Flavio H. Fenton and Radu Grosu and Paul L. Jones and Scott A. Smolka}, editor = {Ezio Bartocci and Pietro Li{\`{o}} and Nicola Paoletti}, title = {Bifurcation Analysis of Cardiac Alternans Using {\textbackslash}delta -Decidability}, booktitle = {Computational Methods in Systems Biology - 14th International Conference, {CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9859}, pages = {132--146}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-45177-0\_9}, doi = {10.1007/978-3-319-45177-0\_9}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/IslamBKCCFGJS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/LoM16, author = {Chieh Lo and Radu Marculescu}, editor = {Ezio Bartocci and Pietro Li{\`{o}} and Nicola Paoletti}, title = {Autonomous and Adaptive Control of Populations of Bacteria Through Environment Regulation}, booktitle = {Computational Methods in Systems Biology - 14th International Conference, {CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9859}, pages = {168--185}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-45177-0\_11}, doi = {10.1007/978-3-319-45177-0\_11}, timestamp = {Sat, 16 Sep 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/LoM16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/LoosFH16, author = {Carolin Loos and Anna Fiedler and Jan Hasenauer}, editor = {Ezio Bartocci and Pietro Li{\`{o}} and Nicola Paoletti}, title = {Parameter Estimation for Reaction Rate Equation Constrained Mixture Models}, booktitle = {Computational Methods in Systems Biology - 14th International Conference, {CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9859}, pages = {186--200}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-45177-0\_12}, doi = {10.1007/978-3-319-45177-0\_12}, timestamp = {Sat, 16 Sep 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/LoosFH16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/MadelaineTLN16, author = {Guillaume Madelaine and Elisa Tonello and C{\'{e}}dric Lhoussaine and Joachim Niehren}, editor = {Ezio Bartocci and Pietro Li{\`{o}} and Nicola Paoletti}, title = {Normalizing Chemical Reaction Networks by Confluent Structural Simplification}, booktitle = {Computational Methods in Systems Biology - 14th International Conference, {CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9859}, pages = {201--215}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-45177-0\_13}, doi = {10.1007/978-3-319-45177-0\_13}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/MadelaineTLN16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/MizeraPY16, author = {Andrzej Mizera and Jun Pang and Qixia Yuan}, editor = {Ezio Bartocci and Pietro Li{\`{o}} and Nicola Paoletti}, title = {Fast Simulation of Probabilistic Boolean Networks}, booktitle = {Computational Methods in Systems Biology - 14th International Conference, {CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9859}, pages = {216--231}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-45177-0\_14}, doi = {10.1007/978-3-319-45177-0\_14}, timestamp = {Sat, 31 Aug 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/MizeraPY16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/MizeraPY16a, author = {Andrzej Mizera and Jun Pang and Qixia Yuan}, editor = {Ezio Bartocci and Pietro Li{\`{o}} and Nicola Paoletti}, title = {{ASSA-PBN} 2.0: {A} Software Tool for Probabilistic Boolean Networks}, booktitle = {Computational Methods in Systems Biology - 14th International Conference, {CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9859}, pages = {309--315}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-45177-0\_19}, doi = {10.1007/978-3-319-45177-0\_19}, timestamp = {Sat, 31 Aug 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/MizeraPY16a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/MuD0R16, author = {Chunyan Mu and Peter Dittrich and David Parker and Jonathan E. Rowe}, editor = {Ezio Bartocci and Pietro Li{\`{o}} and Nicola Paoletti}, title = {Formal Quantitative Analysis of Reaction Networks Using Chemical Organisation Theory}, booktitle = {Computational Methods in Systems Biology - 14th International Conference, {CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9859}, pages = {232--251}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-45177-0\_15}, doi = {10.1007/978-3-319-45177-0\_15}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/MuD0R16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Pauleve16, author = {Lo{\"{\i}}c Paulev{\'{e}}}, editor = {Ezio Bartocci and Pietro Li{\`{o}} and Nicola Paoletti}, title = {Goal-Oriented Reduction of Automata Networks}, booktitle = {Computational Methods in Systems Biology - 14th International Conference, {CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9859}, pages = {252--272}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-45177-0\_16}, doi = {10.1007/978-3-319-45177-0\_16}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/Pauleve16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Sommer-SimpsonR16, author = {Jasha Sommer{-}Simpson and John Reinitz and Leonid Fridlyand and Louis Philipson and Ovidiu Radulescu}, editor = {Ezio Bartocci and Pietro Li{\`{o}} and Nicola Paoletti}, title = {Hybrid Reductions of Computational Models of Ion Channels Coupled to Cellular Biochemistry}, booktitle = {Computational Methods in Systems Biology - 14th International Conference, {CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9859}, pages = {273--288}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-45177-0\_17}, doi = {10.1007/978-3-319-45177-0\_17}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/Sommer-SimpsonR16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/TrojakSHSRC16, author = {Matej Troj{\'{a}}k and David Safr{\'{a}}nek and Jakub Hrabec and Jakub Salagovic and Frantiska Romanovsk{\'{a}} and Jan Cerven{\'{y}}}, editor = {Ezio Bartocci and Pietro Li{\`{o}} and Nicola Paoletti}, title = {E-Cyanobacterium.org: {A} Web-Based Platform for Systems Biology of Cyanobacteria}, booktitle = {Computational Methods in Systems Biology - 14th International Conference, {CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9859}, pages = {316--322}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-45177-0\_20}, doi = {10.1007/978-3-319-45177-0\_20}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/TrojakSHSRC16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/VillaverdeBB16, author = {Alejandro Fern{\'{a}}ndez Villaverde and Kolja Becker and Julio R. Banga}, editor = {Ezio Bartocci and Pietro Li{\`{o}} and Nicola Paoletti}, title = {{PREMER:} Parallel Reverse Engineering of Biological Networks with Information Theory}, booktitle = {Computational Methods in Systems Biology - 14th International Conference, {CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9859}, pages = {323--329}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-45177-0\_21}, doi = {10.1007/978-3-319-45177-0\_21}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/VillaverdeBB16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/WangMLFLC16, author = {Qinsi Wang and Natasa Miskov{-}Zivanov and Bing Liu and James R. Faeder and Michael Lotze and Edmund M. Clarke}, editor = {Ezio Bartocci and Pietro Li{\`{o}} and Nicola Paoletti}, title = {Formal Modeling and Analysis of Pancreatic Cancer Microenvironment}, booktitle = {Computational Methods in Systems Biology - 14th International Conference, {CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9859}, pages = {289--305}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-45177-0\_18}, doi = {10.1007/978-3-319-45177-0\_18}, timestamp = {Mon, 06 Nov 2017 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/WangMLFLC16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/cmsb/2016, editor = {Ezio Bartocci and Pietro Li{\`{o}} and Nicola Paoletti}, title = {Computational Methods in Systems Biology - 14th International Conference, {CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9859}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-45177-0}, doi = {10.1007/978-3-319-45177-0}, isbn = {978-3-319-45176-3}, timestamp = {Sun, 02 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/2016.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Abou-JaoudeFT15, author = {Wassim Abou{-}Jaoud{\'{e}} and J{\'{e}}r{\^{o}}me Feret and Denis Thieffry}, editor = {Olivier F. Roux and J{\'{e}}r{\'{e}}mie Bourdon}, title = {Derivation of Qualitative Dynamical Models from Biochemical Networks}, booktitle = {Computational Methods in Systems Biology - 13th International Conference, {CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9308}, pages = {195--207}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-23401-4\_17}, doi = {10.1007/978-3-319-23401-4\_17}, timestamp = {Sun, 02 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/Abou-JaoudeFT15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/AndreychenkoMI15, author = {Alexander Andreychenko and Morgan Magnin and Katsumi Inoue}, editor = {Olivier F. Roux and J{\'{e}}r{\'{e}}mie Bourdon}, title = {Modeling of Resilience Properties in Oscillatory Biological Systems Using Parametric Time Petri Nets}, booktitle = {Computational Methods in Systems Biology - 13th International Conference, {CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9308}, pages = {239--250}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-23401-4\_20}, doi = {10.1007/978-3-319-23401-4\_20}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/AndreychenkoMI15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BanksSS15, author = {Chris J. Banks and Daniel D. Seaton and Ian Stark}, editor = {Olivier F. Roux and J{\'{e}}r{\'{e}}mie Bourdon}, title = {Analysis of a Post-translational Oscillator Using Process Algebra and Spatio-Temporal Logic}, booktitle = {Computational Methods in Systems Biology - 13th International Conference, {CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9308}, pages = {222--238}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-23401-4\_19}, doi = {10.1007/978-3-319-23401-4\_19}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BanksSS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BarbotKMP15, author = {Beno{\^{\i}}t Barbot and Marta Z. Kwiatkowska and Alexandru Mereacre and Nicola Paoletti}, editor = {Olivier F. Roux and J{\'{e}}r{\'{e}}mie Bourdon}, title = {Estimation and Verification of Hybrid Heart Models for Personalised Medical and Wearable Devices}, booktitle = {Computational Methods in Systems Biology - 13th International Conference, {CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9308}, pages = {3--7}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-23401-4\_1}, doi = {10.1007/978-3-319-23401-4\_1}, timestamp = {Wed, 25 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BarbotKMP15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BernotCR15, author = {Gilles Bernot and Jean{-}Paul Comet and Olivier F. Roux}, editor = {Olivier F. Roux and J{\'{e}}r{\'{e}}mie Bourdon}, title = {A Genetically Modified Hoare Logic that Identifies the Parameters of a Gene Network}, booktitle = {Computational Methods in Systems Biology - 13th International Conference, {CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9308}, pages = {8--12}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-23401-4\_2}, doi = {10.1007/978-3-319-23401-4\_2}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BernotCR15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BogomolovHPRS15, author = {Sergiy Bogomolov and Thomas A. Henzinger and Andreas Podelski and Jakob Ruess and Christian Schilling}, editor = {Olivier F. Roux and J{\'{e}}r{\'{e}}mie Bourdon}, title = {Adaptive Moment Closure for Parameter Inference of Biochemical Reaction Networks}, booktitle = {Computational Methods in Systems Biology - 13th International Conference, {CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9308}, pages = {77--89}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-23401-4\_8}, doi = {10.1007/978-3-319-23401-4\_8}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BogomolovHPRS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BortolussiMS15, author = {Luca Bortolussi and Dimitrios Milios and Guido Sanguinetti}, editor = {Olivier F. Roux and J{\'{e}}r{\'{e}}mie Bourdon}, title = {Efficient Stochastic Simulation of Systems with Multiple Time Scales via Statistical Abstraction}, booktitle = {Computational Methods in Systems Biology - 13th International Conference, {CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9308}, pages = {40--51}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-23401-4\_5}, doi = {10.1007/978-3-319-23401-4\_5}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BortolussiMS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BrimCDPS15, author = {Lubos Brim and Milan Ceska and Martin Demko and Samuel Pastva and David Safr{\'{a}}nek}, editor = {Olivier F. Roux and J{\'{e}}r{\'{e}}mie Bourdon}, title = {Parameter Synthesis by Parallel Coloured {CTL} Model Checking}, booktitle = {Computational Methods in Systems Biology - 13th International Conference, {CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9308}, pages = {251--263}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-23401-4\_21}, doi = {10.1007/978-3-319-23401-4\_21}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BrimCDPS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BudinichBLE15, author = {Marko Budinich and J{\'{e}}r{\'{e}}mie Bourdon and Abdelhalim Larhlimi and Damien Eveillard}, editor = {Olivier F. Roux and J{\'{e}}r{\'{e}}mie Bourdon}, title = {{OPINION} {PAPER} Evolutionary Constraint-Based Formulation Requires New Bi-level Solving Techniques}, booktitle = {Computational Methods in Systems Biology - 13th International Conference, {CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9308}, pages = {279--281}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-23401-4\_23}, doi = {10.1007/978-3-319-23401-4\_23}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BudinichBLE15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/CamachoTR15, author = {Francy Camacho and Rodrigo Torres and Ra{\'{u}}l Ramos{-}Poll{\'{a}}n}, editor = {Olivier F. Roux and J{\'{e}}r{\'{e}}mie Bourdon}, title = {Feature Learning Using Stacked Autoencoders to Predict the Activity of Antimicrobial Peptides}, booktitle = {Computational Methods in Systems Biology - 13th International Conference, {CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9308}, pages = {121--132}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-23401-4\_11}, doi = {10.1007/978-3-319-23401-4\_11}, timestamp = {Mon, 06 Nov 2017 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/CamachoTR15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/CardelliKL15, author = {Luca Cardelli and Marta Z. Kwiatkowska and Luca Laurenti}, editor = {Olivier F. Roux and J{\'{e}}r{\'{e}}mie Bourdon}, title = {Stochastic Analysis of Chemical Reaction Networks Using Linear Noise Approximation}, booktitle = {Computational Methods in Systems Biology - 13th International Conference, {CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9308}, pages = {64--76}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-23401-4\_7}, doi = {10.1007/978-3-319-23401-4\_7}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/CardelliKL15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/GnimpiebaTCCL15, author = {Etienne Z. Gnimpieba and Mathialakan Thavappiragasam and Abalo Chango and Bill Conn and Carol M. Lushbough}, editor = {Olivier F. Roux and J{\'{e}}r{\'{e}}mie Bourdon}, title = {SBMLDock: Docker Driven Systems Biology Tool Development and Usage}, booktitle = {Computational Methods in Systems Biology - 13th International Conference, {CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9308}, pages = {282--285}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-23401-4\_24}, doi = {10.1007/978-3-319-23401-4\_24}, timestamp = {Mon, 03 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/GnimpiebaTCCL15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/LoosMTH15, author = {Carolin Loos and Carsten Marr and Fabian J. Theis and Jan Hasenauer}, editor = {Olivier F. Roux and J{\'{e}}r{\'{e}}mie Bourdon}, title = {Approximate Bayesian Computation for Stochastic Single-Cell Time-Lapse Data Using Multivariate Test Statistics}, booktitle = {Computational Methods in Systems Biology - 13th International Conference, {CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9308}, pages = {52--63}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-23401-4\_6}, doi = {10.1007/978-3-319-23401-4\_6}, timestamp = {Sun, 02 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/LoosMTH15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/MadelaineLN15, author = {Guillaume Madelaine and C{\'{e}}dric Lhoussaine and Joachim Niehren}, editor = {Olivier F. Roux and J{\'{e}}r{\'{e}}mie Bourdon}, title = {Structural Simplification of Chemical Reaction Networks Preserving Deterministic Semantics}, booktitle = {Computational Methods in Systems Biology - 13th International Conference, {CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9308}, pages = {133--144}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-23401-4\_12}, doi = {10.1007/978-3-319-23401-4\_12}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/MadelaineLN15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/MadsenSZ15, author = {Curtis Madsen and Fedor Shmarov and Paolo Zuliani}, editor = {Olivier F. Roux and J{\'{e}}r{\'{e}}mie Bourdon}, title = {BioPSy: An SMT-based Tool for Guaranteed Parameter Set Synthesis of Biological Models}, booktitle = {Computational Methods in Systems Biology - 13th International Conference, {CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9308}, pages = {182--194}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-23401-4\_16}, doi = {10.1007/978-3-319-23401-4\_16}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/MadsenSZ15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/NiehrenJVCJ15, author = {Joachim Niehren and Mathias John and Cristian Versari and Fran{\c{c}}ois Coutte and Philippe Jacques}, editor = {Olivier F. Roux and J{\'{e}}r{\'{e}}mie Bourdon}, title = {Qualitative Reasoning for Reaction Networks with Partial Kinetic Information}, booktitle = {Computational Methods in Systems Biology - 13th International Conference, {CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9308}, pages = {157--169}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-23401-4\_14}, doi = {10.1007/978-3-319-23401-4\_14}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/NiehrenJVCJ15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/NigamDKMT15, author = {Vivek Nigam and Robin Donaldson and Merrill Knapp and Tim McCarthy and Carolyn L. Talcott}, editor = {Olivier F. Roux and J{\'{e}}r{\'{e}}mie Bourdon}, title = {Inferring Executable Models from Formalized Experimental Evidence}, booktitle = {Computational Methods in Systems Biology - 13th International Conference, {CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9308}, pages = {90--103}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-23401-4\_9}, doi = {10.1007/978-3-319-23401-4\_9}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/NigamDKMT15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/OstrowskiPSSG15, author = {Max Ostrowski and Lo{\"{\i}}c Paulev{\'{e}} and Torsten Schaub and Anne Siegel and Carito Guziolowski}, editor = {Olivier F. Roux and J{\'{e}}r{\'{e}}mie Bourdon}, title = {Boolean Network Identification from Multiplex Time Series Data}, booktitle = {Computational Methods in Systems Biology - 13th International Conference, {CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9308}, pages = {170--181}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-23401-4\_15}, doi = {10.1007/978-3-319-23401-4\_15}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/OstrowskiPSSG15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/RadulescuSNG015, author = {Ovidiu Radulescu and Satya Swarup Samal and Aur{\'{e}}lien Naldi and Dima Grigoriev and Andreas Weber}, editor = {Olivier F. Roux and J{\'{e}}r{\'{e}}mie Bourdon}, title = {Symbolic Dynamics of Biochemical Pathways as Finite States Machines}, booktitle = {Computational Methods in Systems Biology - 13th International Conference, {CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9308}, pages = {104--120}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-23401-4\_10}, doi = {10.1007/978-3-319-23401-4\_10}, timestamp = {Sun, 02 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/RadulescuSNG015.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/RozanskiBRK15, author = {Robert Rozanski and Stefano Bragaglia and Oliver Ray and Ross D. King}, editor = {Olivier F. Roux and J{\'{e}}r{\'{e}}mie Bourdon}, title = {Automating the Development of Metabolic Network Models}, booktitle = {Computational Methods in Systems Biology - 13th International Conference, {CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9308}, pages = {145--156}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-23401-4\_13}, doi = {10.1007/978-3-319-23401-4\_13}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/RozanskiBRK15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/StreckTS15, author = {Adam Streck and Kirsten Thobe and Heike Siebert}, editor = {Olivier F. Roux and J{\'{e}}r{\'{e}}mie Bourdon}, title = {Analysing Cell Line Specific {EGFR} Signalling via Optimized Automata Based Model Checking}, booktitle = {Computational Methods in Systems Biology - 13th International Conference, {CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9308}, pages = {264--276}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-23401-4\_22}, doi = {10.1007/978-3-319-23401-4\_22}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/StreckTS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/TraynardFS15, author = {Pauline Traynard and Fran{\c{c}}ois Fages and Sylvain Soliman}, editor = {Olivier F. Roux and J{\'{e}}r{\'{e}}mie Bourdon}, title = {Model-Based Investigation of the Effect of the Cell Cycle on the Circadian Clock Through Transcription Inhibition During Mitosis}, booktitle = {Computational Methods in Systems Biology - 13th International Conference, {CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9308}, pages = {208--221}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-23401-4\_18}, doi = {10.1007/978-3-319-23401-4\_18}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/TraynardFS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Trejo-BanosMS15, author = {Daniel Trejo{-}Ba{\~{n}}os and Andrew J. Millar and Guido Sanguinetti}, editor = {Olivier F. Roux and J{\'{e}}r{\'{e}}mie Bourdon}, title = {Experimental Design for Inference over the A. thaliana Circadian Clock Network}, booktitle = {Computational Methods in Systems Biology - 13th International Conference, {CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9308}, pages = {28--39}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-23401-4\_4}, doi = {10.1007/978-3-319-23401-4\_4}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/Trejo-BanosMS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/WangZKGC15, author = {Qinsi Wang and Paolo Zuliani and Soonho Kong and Sicun Gao and Edmund M. Clarke}, editor = {Olivier F. Roux and J{\'{e}}r{\'{e}}mie Bourdon}, title = {SReach: {A} Probabilistic Bounded Delta-Reachability Analyzer for Stochastic Hybrid Systems}, booktitle = {Computational Methods in Systems Biology - 13th International Conference, {CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9308}, pages = {15--27}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-23401-4\_3}, doi = {10.1007/978-3-319-23401-4\_3}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/WangZKGC15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/cmsb/2015, editor = {Olivier F. Roux and J{\'{e}}r{\'{e}}mie Bourdon}, title = {Computational Methods in Systems Biology - 13th International Conference, {CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9308}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-23401-4}, doi = {10.1007/978-3-319-23401-4}, isbn = {978-3-319-23400-7}, timestamp = {Tue, 14 May 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/2015.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BittigRBU14, author = {Arne T. Bittig and Florian Reinhardt and Simone Baltrusch and Adelinde M. Uhrmacher}, editor = {Pedro Mendes and Joseph O. Dada and Kieran Smallbone}, title = {Predictive Modelling of Mitochondrial Spatial Structure and Health}, booktitle = {Computational Methods in Systems Biology - 12th International Conference, {CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8859}, pages = {252--255}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-319-12982-2\_20}, doi = {10.1007/978-3-319-12982-2\_20}, timestamp = {Sat, 09 Apr 2022 12:36:34 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BittigRBU14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BombieriDSFLG14, author = {Nicola Bombieri and Rosario Distefano and Giovanni Scardoni and Franco Fummi and Carlo Laudanna and Rosalba Giugno}, editor = {Pedro Mendes and Joseph O. Dada and Kieran Smallbone}, title = {Dynamic Modeling and Simulation of Leukocyte Integrin Activation through an Electronic Design Automation Framework}, booktitle = {Computational Methods in Systems Biology - 12th International Conference, {CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8859}, pages = {143--154}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-319-12982-2\_11}, doi = {10.1007/978-3-319-12982-2\_11}, timestamp = {Thu, 15 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BombieriDSFLG14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/CeskaDKP14, author = {Milan Ceska and Frits Dannenberg and Marta Z. Kwiatkowska and Nicola Paoletti}, editor = {Pedro Mendes and Joseph O. Dada and Kieran Smallbone}, title = {Precise Parameter Synthesis for Stochastic Biochemical Systems}, booktitle = {Computational Methods in Systems Biology - 12th International Conference, {CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8859}, pages = {86--98}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-319-12982-2\_7}, doi = {10.1007/978-3-319-12982-2\_7}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/CeskaDKP14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/ChatainHJPS14, author = {Thomas Chatain and Stefan Haar and Lo{\"{\i}}g Jezequel and Lo{\"{\i}}c Paulev{\'{e}} and Stefan Schwoon}, editor = {Pedro Mendes and Joseph O. Dada and Kieran Smallbone}, title = {Characterization of Reachable Attractors Using Petri Net Unfoldings}, booktitle = {Computational Methods in Systems Biology - 12th International Conference, {CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8859}, pages = {129--142}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-319-12982-2\_10}, doi = {10.1007/978-3-319-12982-2\_10}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/ChatainHJPS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/CostaNHV14, author = {Rafael S. Costa and Son Nguyen and Andr{\'{a}}s Hartmann and Susana Vinga}, editor = {Pedro Mendes and Joseph O. Dada and Kieran Smallbone}, title = {Exploring the Cellular Objective in Flux Balance Constraint-Based Models}, booktitle = {Computational Methods in Systems Biology - 12th International Conference, {CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8859}, pages = {211--224}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-319-12982-2\_15}, doi = {10.1007/978-3-319-12982-2\_15}, timestamp = {Fri, 02 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/CostaNHV14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/DelepineCF14, author = {Baudoin Del{\'{e}}pine and Pablo Carbonell and Jean{-}Loup Faulon}, editor = {Pedro Mendes and Joseph O. Dada and Kieran Smallbone}, title = {{XTMS} in Action: Retrosynthetic Design in the Extended Metabolic Space of Heterologous Pathways for High-Value Compounds}, booktitle = {Computational Methods in Systems Biology - 12th International Conference, {CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8859}, pages = {256--259}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-319-12982-2\_21}, doi = {10.1007/978-3-319-12982-2\_21}, timestamp = {Sun, 25 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/DelepineCF14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/FrohlichHTH14, author = {Fabian Fr{\"{o}}hlich and Sabrina Hross and Fabian J. Theis and Jan Hasenauer}, editor = {Pedro Mendes and Joseph O. Dada and Kieran Smallbone}, title = {Radial Basis Function Approximations of Bayesian Parameter Posterior Densities for Uncertainty Analysis}, booktitle = {Computational Methods in Systems Biology - 12th International Conference, {CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8859}, pages = {73--85}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-319-12982-2\_6}, doi = {10.1007/978-3-319-12982-2\_6}, timestamp = {Sun, 02 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/FrohlichHTH14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/FrohlichTH14, author = {Fabian Fr{\"{o}}hlich and Fabian J. Theis and Jan Hasenauer}, editor = {Pedro Mendes and Joseph O. Dada and Kieran Smallbone}, title = {Uncertainty Analysis for Non-identifiable Dynamical Systems: Profile Likelihoods, Bootstrapping and More}, booktitle = {Computational Methods in Systems Biology - 12th International Conference, {CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8859}, pages = {61--72}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-319-12982-2\_5}, doi = {10.1007/978-3-319-12982-2\_5}, timestamp = {Sun, 02 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/FrohlichTH14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/GaborB14, author = {Attila G{\'{a}}bor and Julio R. Banga}, editor = {Pedro Mendes and Joseph O. Dada and Kieran Smallbone}, title = {Improved Parameter Estimation in Kinetic Models: Selection and Tuning of Regularization Methods}, booktitle = {Computational Methods in Systems Biology - 12th International Conference, {CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8859}, pages = {45--60}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-319-12982-2\_4}, doi = {10.1007/978-3-319-12982-2\_4}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/GaborB14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/GuptaLR14, author = {Abhishekh Gupta and Jason Lloyd{-}Price and Andre S. Ribeiro}, editor = {Pedro Mendes and Joseph O. Dada and Kieran Smallbone}, title = {Modelling Polar Retention of Complexes in Escherichia coli}, booktitle = {Computational Methods in Systems Biology - 12th International Conference, {CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8859}, pages = {239--243}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-319-12982-2\_17}, doi = {10.1007/978-3-319-12982-2\_17}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/GuptaLR14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/KohlerKV14, author = {Agnes K{\"{o}}hler and Jean Krivine and Jakob Vidmar}, editor = {Pedro Mendes and Joseph O. Dada and Kieran Smallbone}, title = {A Rule-Based Model of Base Excision Repair}, booktitle = {Computational Methods in Systems Biology - 12th International Conference, {CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8859}, pages = {173--195}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-319-12982-2\_13}, doi = {10.1007/978-3-319-12982-2\_13}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/KohlerKV14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/LemaireT14, author = {Fran{\c{c}}ois Lemaire and Alexandre Temperville}, editor = {Pedro Mendes and Joseph O. Dada and Kieran Smallbone}, title = {On Defining and Computing "Good" Conservation Laws}, booktitle = {Computational Methods in Systems Biology - 12th International Conference, {CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8859}, pages = {1--19}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-319-12982-2\_1}, doi = {10.1007/978-3-319-12982-2\_1}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/LemaireT14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/LintottMPAS14, author = {Rachel Lintott and Stephen McMahon and Kevin Prise and Celine Addie{-}Lagorio and Carron Shankland}, editor = {Pedro Mendes and Joseph O. Dada and Kieran Smallbone}, title = {Using Process Algebra to Model Radiation Induced Bystander Effects}, booktitle = {Computational Methods in Systems Biology - 12th International Conference, {CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8859}, pages = {196--210}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-319-12982-2\_14}, doi = {10.1007/978-3-319-12982-2\_14}, timestamp = {Fri, 02 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/LintottMPAS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/LiuKGZC14, author = {Bing Liu and Soonho Kong and Sicun Gao and Paolo Zuliani and Edmund M. Clarke}, editor = {Pedro Mendes and Joseph O. Dada and Kieran Smallbone}, title = {Parameter Synthesis for Cardiac Cell Hybrid Models Using {\(\delta\)}-Decisions}, booktitle = {Computational Methods in Systems Biology - 12th International Conference, {CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8859}, pages = {99--113}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-319-12982-2\_8}, doi = {10.1007/978-3-319-12982-2\_8}, timestamp = {Tue, 22 Aug 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/LiuKGZC14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/MaruthiTCCHBA14, author = {Lakshmeesh R. M. Maruthi and Ilya Tkachev and Alfonso Carta and Eugenio Cinquemani and Pascal Hersen and Gr{\'{e}}gory Batt and Alessandro Abate}, editor = {Pedro Mendes and Joseph O. Dada and Kieran Smallbone}, title = {Towards Real-Time Control of Gene Expression at the Single Cell Level: {A} Stochastic Control Approach}, booktitle = {Computational Methods in Systems Biology - 12th International Conference, {CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8859}, pages = {155--172}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-319-12982-2\_12}, doi = {10.1007/978-3-319-12982-2\_12}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/MaruthiTCCHBA14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Miskov-ZivanovWL14, author = {Natasa Miskov{-}Zivanov and Peter Wei and Chang Sheng Clement Loh}, editor = {Pedro Mendes and Joseph O. Dada and Kieran Smallbone}, title = {THiMED: Time in Hierarchical Model Extraction and Design}, booktitle = {Computational Methods in Systems Biology - 12th International Conference, {CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8859}, pages = {260--263}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-319-12982-2\_22}, doi = {10.1007/978-3-319-12982-2\_22}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/Miskov-ZivanovWL14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Otero-MurasB14, author = {Irene Otero{-}Muras and Julio R. Banga}, editor = {Pedro Mendes and Joseph O. Dada and Kieran Smallbone}, title = {Optimization Based Design of Synthetic Oscillators from Standard Biological Parts}, booktitle = {Computational Methods in Systems Biology - 12th International Conference, {CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8859}, pages = {225--238}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-319-12982-2\_16}, doi = {10.1007/978-3-319-12982-2\_16}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/Otero-MurasB14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/PeresMS14, author = {Sabine P{\'{e}}r{\`{e}}s and Martin Morterol and Laurent Simon}, editor = {Pedro Mendes and Joseph O. Dada and Kieran Smallbone}, title = {SAT-Based Metabolics Pathways Analysis without Compilation}, booktitle = {Computational Methods in Systems Biology - 12th International Conference, {CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8859}, pages = {20--31}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-319-12982-2\_2}, doi = {10.1007/978-3-319-12982-2\_2}, timestamp = {Tue, 14 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/PeresMS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/StewartGC14, author = {Donal Stewart and Stephen Gilmore and Michael A. Cousin}, editor = {Pedro Mendes and Joseph O. Dada and Kieran Smallbone}, title = {FM-Sim: Protocol Definition, Simulation and Rate Inference for Neuroscience Assays}, booktitle = {Computational Methods in Systems Biology - 12th International Conference, {CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8859}, pages = {248--251}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-319-12982-2\_19}, doi = {10.1007/978-3-319-12982-2\_19}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/StewartGC14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/ThobeSKS14, author = {Kirsten Thobe and Adam Streck and Hannes Klarner and Heike Siebert}, editor = {Pedro Mendes and Joseph O. Dada and Kieran Smallbone}, title = {Model Integration and Crosstalk Analysis of Logical Regulatory Networks}, booktitle = {Computational Methods in Systems Biology - 12th International Conference, {CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8859}, pages = {32--44}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-319-12982-2\_3}, doi = {10.1007/978-3-319-12982-2\_3}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/ThobeSKS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/TraynardFS14, author = {Pauline Traynard and Fran{\c{c}}ois Fages and Sylvain Soliman}, editor = {Pedro Mendes and Joseph O. Dada and Kieran Smallbone}, title = {Trace Simplifications Preserving Temporal Logic Formulae with Case Study in a Coupled Model of the Cell Cycle and the Circadian Clock}, booktitle = {Computational Methods in Systems Biology - 12th International Conference, {CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8859}, pages = {114--128}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-319-12982-2\_9}, doi = {10.1007/978-3-319-12982-2\_9}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/TraynardFS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/ZardilisDAS14, author = {Argyris Zardilis and Jo{\~{a}}o Dias and Animesh Acharjee and James Smith}, editor = {Pedro Mendes and Joseph O. Dada and Kieran Smallbone}, title = {Extensible and Executable Stochastic Models of Fatty Acid and Lipid Metabolism}, booktitle = {Computational Methods in Systems Biology - 12th International Conference, {CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8859}, pages = {244--247}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-319-12982-2\_18}, doi = {10.1007/978-3-319-12982-2\_18}, timestamp = {Wed, 05 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/ZardilisDAS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/cmsb/2014, editor = {Pedro Mendes and Joseph O. Dada and Kieran Smallbone}, title = {Computational Methods in Systems Biology - 12th International Conference, {CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8859}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-319-12982-2}, doi = {10.1007/978-3-319-12982-2}, isbn = {978-3-319-12981-5}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/2014.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/AdivarahanMMI13, author = {Srivathsan Adivarahan and Denis Menshykau and Odyss{\'{e}} Michos and Dagmar Iber}, editor = {Ashutosh Gupta and Thomas A. Henzinger}, title = {Dynamic Image-Based Modelling of Kidney Branching Morphogenesis}, booktitle = {Computational Methods in Systems Biology - 11th International Conference, {CMSB} 2013, Klosterneuburg, Austria, September 22-24, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8130}, pages = {106--119}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40708-6\_9}, doi = {10.1007/978-3-642-40708-6\_9}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/AdivarahanMMI13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BartocciBN13, author = {Ezio Bartocci and Luca Bortolussi and Laura Nenzi}, editor = {Ashutosh Gupta and Thomas A. Henzinger}, title = {A Temporal Logic Approach to Modular Design of Synthetic Biological Circuits}, booktitle = {Computational Methods in Systems Biology - 11th International Conference, {CMSB} 2013, Klosterneuburg, Austria, September 22-24, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8130}, pages = {164--177}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40708-6\_13}, doi = {10.1007/978-3-642-40708-6\_13}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/BartocciBN13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BenteaOB13, author = {Lucian Bentea and Peter Csaba {\"{O}}lveczky and Eduard Bentea}, editor = {Ashutosh Gupta and Thomas A. Henzinger}, title = {Using Probabilistic Strategies to Formalize and Compare {\(\alpha\)}-Synuclein Aggregation and Propagation under Different Scenarios}, booktitle = {Computational Methods in Systems Biology - 11th International Conference, {CMSB} 2013, Klosterneuburg, Austria, September 22-24, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8130}, pages = {92--105}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40708-6\_8}, doi = {10.1007/978-3-642-40708-6\_8}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BenteaOB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/CamporesiFH13, author = {Ferdinanda Camporesi and J{\'{e}}r{\^{o}}me Feret and Jonathan Hayman}, editor = {Ashutosh Gupta and Thomas A. Henzinger}, title = {Context-Sensitive Flow Analyses: {A} Hierarchy of Model Reductions}, booktitle = {Computational Methods in Systems Biology - 11th International Conference, {CMSB} 2013, Klosterneuburg, Austria, September 22-24, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8130}, pages = {220--233}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40708-6\_17}, doi = {10.1007/978-3-642-40708-6\_17}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/CamporesiFH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/ChancellorACMR13, author = {Courtney Chancellor and Amine Ammar and Francisco Chinesta and Morgan Magnin and Olivier F. Roux}, editor = {Ashutosh Gupta and Thomas A. Henzinger}, title = {Linking Discrete and Stochastic Models: The Chemical Master Equation as a Bridge between Process Hitting and Proper Generalized Decomposition}, booktitle = {Computational Methods in Systems Biology - 11th International Conference, {CMSB} 2013, Klosterneuburg, Austria, September 22-24, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8130}, pages = {50--63}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40708-6\_5}, doi = {10.1007/978-3-642-40708-6\_5}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/ChancellorACMR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/ChiangFJS13, author = {Hui{-}Ju Katherine Chiang and Fran{\c{c}}ois Fages and Jie{-}Hong R. Jiang and Sylvain Soliman}, editor = {Ashutosh Gupta and Thomas A. Henzinger}, title = {On the Hybrid Composition and Simulation of Heterogeneous Biochemical Models}, booktitle = {Computational Methods in Systems Biology - 11th International Conference, {CMSB} 2013, Klosterneuburg, Austria, September 22-24, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8130}, pages = {192--205}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40708-6\_15}, doi = {10.1007/978-3-642-40708-6\_15}, timestamp = {Fri, 02 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/ChiangFJS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/DannenbergHK13, author = {Frits Dannenberg and Ernst Moritz Hahn and Marta Z. Kwiatkowska}, editor = {Ashutosh Gupta and Thomas A. Henzinger}, title = {Computing Cumulative Rewards Using Fast Adaptive Uniformisation}, booktitle = {Computational Methods in Systems Biology - 11th International Conference, {CMSB} 2013, Klosterneuburg, Austria, September 22-24, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8130}, pages = {33--49}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40708-6\_4}, doi = {10.1007/978-3-642-40708-6\_4}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/DannenbergHK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/FiorettoP13, author = {Ferdinando Fioretto and Enrico Pontelli}, editor = {Ashutosh Gupta and Thomas A. Henzinger}, title = {Constraint Programming in Community-Based Gene Regulatory Network Inference}, booktitle = {Computational Methods in Systems Biology - 11th International Conference, {CMSB} 2013, Klosterneuburg, Austria, September 22-24, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8130}, pages = {135--149}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40708-6\_11}, doi = {10.1007/978-3-642-40708-6\_11}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/FiorettoP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/GaborHSB13, author = {Attila G{\'{a}}bor and Katalin M. Hangos and G{\'{a}}bor Szederk{\'{e}}nyi and Julio R. Banga}, editor = {Ashutosh Gupta and Thomas A. Henzinger}, title = {On the Verification and Correction of Large-Scale Kinetic Models in Systems Biology}, booktitle = {Computational Methods in Systems Biology - 11th International Conference, {CMSB} 2013, Klosterneuburg, Austria, September 22-24, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8130}, pages = {206--219}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40708-6\_16}, doi = {10.1007/978-3-642-40708-6\_16}, timestamp = {Sun, 02 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/GaborHSB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/GeorgoulasHS13, author = {Anastasis Georgoulas and Jane Hillston and Guido Sanguinetti}, editor = {Ashutosh Gupta and Thomas A. Henzinger}, title = {ABC-Fun: {A} Probabilistic Programming Language for Biology}, booktitle = {Computational Methods in Systems Biology - 11th International Conference, {CMSB} 2013, Klosterneuburg, Austria, September 22-24, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8130}, pages = {150--163}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40708-6\_12}, doi = {10.1007/978-3-642-40708-6\_12}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/GeorgoulasHS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/GoldsteinB13, author = {Yaron A. B. Goldstein and Alexander Bockmayr}, editor = {Ashutosh Gupta and Thomas A. Henzinger}, title = {A Lattice-Theoretic Framework for Metabolic Pathway Analysis}, booktitle = {Computational Methods in Systems Biology - 11th International Conference, {CMSB} 2013, Klosterneuburg, Austria, September 22-24, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8130}, pages = {178--191}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40708-6\_14}, doi = {10.1007/978-3-642-40708-6\_14}, timestamp = {Fri, 02 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/GoldsteinB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/HelmsLSU13, author = {Tobias Helms and Martin Luboschik and Heidrun Schumann and Adelinde M. Uhrmacher}, editor = {Ashutosh Gupta and Thomas A. Henzinger}, title = {An Approximate Execution of Rule-Based Multi-level Models}, booktitle = {Computational Methods in Systems Biology - 11th International Conference, {CMSB} 2013, Klosterneuburg, Austria, September 22-24, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8130}, pages = {19--32}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40708-6\_3}, doi = {10.1007/978-3-642-40708-6\_3}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/HelmsLSU13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/KlannPPK13, author = {Michael Klann and Lo{\"{\i}}c Paulev{\'{e}} and Tatjana Petrov and Heinz Koeppl}, editor = {Ashutosh Gupta and Thomas A. Henzinger}, title = {Coarse-Grained Brownian Dynamics Simulation of Rule-Based Models}, booktitle = {Computational Methods in Systems Biology - 11th International Conference, {CMSB} 2013, Klosterneuburg, Austria, September 22-24, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8130}, pages = {64--77}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40708-6\_6}, doi = {10.1007/978-3-642-40708-6\_6}, timestamp = {Thu, 15 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/KlannPPK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/MikeevSW13, author = {Linar Mikeev and Werner Sandmann and Verena Wolf}, editor = {Ashutosh Gupta and Thomas A. Henzinger}, title = {Numerical Approximation of Rare Event Probabilities in Biochemically Reacting Systems}, booktitle = {Computational Methods in Systems Biology - 11th International Conference, {CMSB} 2013, Klosterneuburg, Austria, September 22-24, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8130}, pages = {5--18}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40708-6\_2}, doi = {10.1007/978-3-642-40708-6\_2}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/MikeevSW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/PalaniappanG0HT13, author = {Sucheendra K. Palaniappan and Benjamin M. Gyori and Bing Liu and David Hsu and P. S. Thiagarajan}, editor = {Ashutosh Gupta and Thomas A. Henzinger}, title = {Statistical Model Checking Based Calibration and Analysis of Bio-pathway Models}, booktitle = {Computational Methods in Systems Biology - 11th International Conference, {CMSB} 2013, Klosterneuburg, Austria, September 22-24, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8130}, pages = {120--134}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40708-6\_10}, doi = {10.1007/978-3-642-40708-6\_10}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/PalaniappanG0HT13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/ParvuGHLS13, author = {Ovidiu Parvu and David R. Gilbert and Monika Heiner and Fei Liu and Nigel J. Saunders}, editor = {Ashutosh Gupta and Thomas A. Henzinger}, title = {Modelling and Analysis of Phase Variation in Bacterial Colony Growth}, booktitle = {Computational Methods in Systems Biology - 11th International Conference, {CMSB} 2013, Klosterneuburg, Austria, September 22-24, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8130}, pages = {78--91}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40708-6\_7}, doi = {10.1007/978-3-642-40708-6\_7}, timestamp = {Fri, 01 Sep 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/ParvuGHLS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/RuessL13, author = {Jakob Ruess and John Lygeros}, editor = {Ashutosh Gupta and Thomas A. Henzinger}, title = {On the Use of the Moment Equations for Parameter Inference, Control and Experimental Design in Stochastic Biochemical Reaction Networks}, booktitle = {Computational Methods in Systems Biology - 11th International Conference, {CMSB} 2013, Klosterneuburg, Austria, September 22-24, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8130}, pages = {1--4}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40708-6\_1}, doi = {10.1007/978-3-642-40708-6\_1}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/RuessL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/cmsb/2013, editor = {Ashutosh Gupta and Thomas A. Henzinger}, title = {Computational Methods in Systems Biology - 11th International Conference, {CMSB} 2013, Klosterneuburg, Austria, September 22-24, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8130}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40708-6}, doi = {10.1007/978-3-642-40708-6}, isbn = {978-3-642-40707-9}, timestamp = {Mon, 26 Aug 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/2013.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BallariniMR12, author = {Paolo Ballarini and Jarno M{\"{a}}kel{\"{a}} and Andre S. Ribeiro}, editor = {David R. Gilbert and Monika Heiner}, title = {Expressive Statistical Model Checking of Genetic Networks with Delayed Stochastic Dynamics}, booktitle = {Computational Methods in Systems Biology - 10th International Conference, {CMSB} 2012, London, UK, October 3-5, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7605}, pages = {29--48}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33636-2\_4}, doi = {10.1007/978-3-642-33636-2\_4}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BallariniMR12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BatmanovKLLV12, author = {Kirill Batmanov and C{\'{e}}line Kuttler and Fran{\c{c}}ois Lemaire and C{\'{e}}dric Lhoussaine and Cristian Versari}, editor = {David R. Gilbert and Monika Heiner}, title = {Symmetry-Based Model Reduction for Approximate Stochastic Analysis}, booktitle = {Computational Methods in Systems Biology - 10th International Conference, {CMSB} 2012, London, UK, October 3-5, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7605}, pages = {49--68}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33636-2\_5}, doi = {10.1007/978-3-642-33636-2\_5}, timestamp = {Fri, 02 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/BatmanovKLLV12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BennettLPUHRST12, author = {Laura Bennett and Artem Lysenko and Lazaros G. Papageorgiou and Martin Urban and Kim E. Hammond{-}Kosack and Christopher J. Rawlings and Mansoor A. S. Saqi and Sophia Tsoka}, editor = {David R. Gilbert and Monika Heiner}, title = {Detection of Multi-clustered Genes and Community Structure for the Plant Pathogenic Fungus Fusarium graminearum}, booktitle = {Computational Methods in Systems Biology - 10th International Conference, {CMSB} 2012, London, UK, October 3-5, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7605}, pages = {69--86}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33636-2\_6}, doi = {10.1007/978-3-642-33636-2\_6}, timestamp = {Tue, 21 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/BennettLPUHRST12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BlatkeDHSM12, author = {Mary Ann Bl{\"{a}}tke and Anna Dittrich and Monika Heiner and Fred Schaper and Wolfgang Marwan}, editor = {David R. Gilbert and Monika Heiner}, title = {{JAK-STAT} Signalling as Example for a Database-Supported Modular Modelling Concept}, booktitle = {Computational Methods in Systems Biology - 10th International Conference, {CMSB} 2012, London, UK, October 3-5, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7605}, pages = {362--365}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33636-2\_21}, doi = {10.1007/978-3-642-33636-2\_21}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BlatkeDHSM12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BlatkeHM12, author = {Mary Ann Bl{\"{a}}tke and Monika Heiner and Wolfgang Marwan}, editor = {David R. Gilbert and Monika Heiner}, title = {Predicting Phenotype from Genotype through Automatically Composed Petri Nets}, booktitle = {Computational Methods in Systems Biology - 10th International Conference, {CMSB} 2012, London, UK, October 3-5, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7605}, pages = {87--106}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33636-2\_7}, doi = {10.1007/978-3-642-33636-2\_7}, timestamp = {Sun, 02 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BlatkeHM12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/CartaCG12, author = {Alfonso Carta and Madalena Chaves and Jean{-}Luc Gouz{\'{e}}}, editor = {David R. Gilbert and Monika Heiner}, title = {A Simple Model to Control Growth Rate of Synthetic E. coli during the Exponential Phase: Model Analysis and Parameter Estimation}, booktitle = {Computational Methods in Systems Biology - 10th International Conference, {CMSB} 2012, London, UK, October 3-5, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7605}, pages = {107--126}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33636-2\_8}, doi = {10.1007/978-3-642-33636-2\_8}, timestamp = {Fri, 02 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/CartaCG12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/CostanzaCALN12, author = {Jole Costanza and Giovanni Carapezza and Claudio Angione and Pietro Li{\`{o}} and Giuseppe Nicosia}, editor = {David R. Gilbert and Monika Heiner}, title = {Multi-objective Optimisation, Sensitivity and Robustness Analysis in {FBA} Modelling}, booktitle = {Computational Methods in Systems Biology - 10th International Conference, {CMSB} 2012, London, UK, October 3-5, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7605}, pages = {127--147}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33636-2\_9}, doi = {10.1007/978-3-642-33636-2\_9}, timestamp = {Wed, 25 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/CostanzaCALN12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/DadaM12, author = {Joseph O. Dada and Pedro Mendes}, editor = {David R. Gilbert and Monika Heiner}, title = {ManyCell: {A} Multiscale Simulator for Cellular Systems}, booktitle = {Computational Methods in Systems Biology - 10th International Conference, {CMSB} 2012, London, UK, October 3-5, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7605}, pages = {366--369}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33636-2\_22}, doi = {10.1007/978-3-642-33636-2\_22}, timestamp = {Tue, 05 Nov 2019 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/DadaM12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/DelaplaceKMS12, author = {Franck Delaplace and Hanna Klaudel and Tarek Melliti and Sylvain Sen{\'{e}}}, editor = {David R. Gilbert and Monika Heiner}, title = {Analysis of Modular Organisation of Interaction Networks Based on Asymptotic Dynamics}, booktitle = {Computational Methods in Systems Biology - 10th International Conference, {CMSB} 2012, London, UK, October 3-5, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7605}, pages = {148--165}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33636-2\_10}, doi = {10.1007/978-3-642-33636-2\_10}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/DelaplaceKMS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/DobrzynskiFNK12, author = {Maciej Dobrzynski and Dirk Fey and Lan K. Nguyen and Boris N. Kholodenko}, editor = {David R. Gilbert and Monika Heiner}, title = {Bimodal Protein Distributions in Heterogeneous Oscillating Systems}, booktitle = {Computational Methods in Systems Biology - 10th International Conference, {CMSB} 2012, London, UK, October 3-5, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7605}, pages = {17--28}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33636-2\_3}, doi = {10.1007/978-3-642-33636-2\_3}, timestamp = {Sat, 24 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/DobrzynskiFNK12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/FagesGS12, author = {Fran{\c{c}}ois Fages and Steven Gay and Sylvain Soliman}, editor = {David R. Gilbert and Monika Heiner}, title = {Inferring Reaction Models from ODEs}, booktitle = {Computational Methods in Systems Biology - 10th International Conference, {CMSB} 2012, London, UK, October 3-5, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7605}, pages = {370--373}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33636-2\_23}, doi = {10.1007/978-3-642-33636-2\_23}, timestamp = {Fri, 02 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/FagesGS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/FolschettePIMR12, author = {Maxime Folschette and Lo{\"{\i}}c Paulev{\'{e}} and Katsumi Inoue and Morgan Magnin and Olivier F. Roux}, editor = {David R. Gilbert and Monika Heiner}, title = {Concretizing the Process Hitting into Biological Regulatory Networks}, booktitle = {Computational Methods in Systems Biology - 10th International Conference, {CMSB} 2012, London, UK, October 3-5, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7605}, pages = {166--186}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33636-2\_11}, doi = {10.1007/978-3-642-33636-2\_11}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/FolschettePIMR12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Galpin12, author = {Vashti Galpin}, editor = {David R. Gilbert and Monika Heiner}, title = {Modelling Trafficking of Proteins within the Mammalian Cell Using Bio-PEPA}, booktitle = {Computational Methods in Systems Biology - 10th International Conference, {CMSB} 2012, London, UK, October 3-5, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7605}, pages = {374--377}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33636-2\_24}, doi = {10.1007/978-3-642-33636-2\_24}, timestamp = {Fri, 02 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/Galpin12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/GibbBBAMSGRSKG12, author = {Matthew Gibb and Rebecca Burton and Christian Bollensdorff and Carlos Afonso and Tahier Mansoori and Ulrich Schotten and David Gavaghan and Blanca Rodr{\'{\i}}guez and J{\"{u}}rgen E. Schneider and Peter Kohl and Vicente Grau}, editor = {David R. Gilbert and Monika Heiner}, title = {Resolving the Three-Dimensional Histology of the Heart}, booktitle = {Computational Methods in Systems Biology - 10th International Conference, {CMSB} 2012, London, UK, October 3-5, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7605}, pages = {2--16}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33636-2\_2}, doi = {10.1007/978-3-642-33636-2\_2}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/GibbBBAMSGRSKG12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/HarmerKLLMN12, author = {Russell Harmer and Jean Krivine and {\'{E}}lise Laruelle and C{\'{e}}dric Lhoussaine and Guillaume Madelaine and Mirabelle Nebut}, editor = {David R. Gilbert and Monika Heiner}, title = {Models of Tet-On System with Epigenetic Effects}, booktitle = {Computational Methods in Systems Biology - 10th International Conference, {CMSB} 2012, London, UK, October 3-5, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7605}, pages = {378--381}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33636-2\_25}, doi = {10.1007/978-3-642-33636-2\_25}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/HarmerKLLMN12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/KawamataAHH12, author = {Ibuki Kawamata and Nathanael Aubert and Masahiro Hamano and Masami Hagiya}, editor = {David R. Gilbert and Monika Heiner}, title = {Abstraction of Graph-Based Models of Bio-molecular Reaction Systems for Efficient Simulation}, booktitle = {Computational Methods in Systems Biology - 10th International Conference, {CMSB} 2012, London, UK, October 3-5, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7605}, pages = {187--206}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33636-2\_12}, doi = {10.1007/978-3-642-33636-2\_12}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/KawamataAHH12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/KlarnerSSKS12, author = {Hannes Klarner and Adam Streck and David Safr{\'{a}}nek and Juraj Kolc{\'{a}}k and Heike Siebert}, editor = {David R. Gilbert and Monika Heiner}, title = {Parameter Identification and Model Ranking of Thomas Networks}, booktitle = {Computational Methods in Systems Biology - 10th International Conference, {CMSB} 2012, London, UK, October 3-5, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7605}, pages = {207--226}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33636-2\_13}, doi = {10.1007/978-3-642-33636-2\_13}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/KlarnerSSKS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/LaihoKG12, author = {Asta Laiho and Andr{\'{a}}s Kir{\'{a}}ly and Attila Gyenesei}, editor = {David R. Gilbert and Monika Heiner}, title = {GeneFuncster: {A} Web Tool for Gene Functional Enrichment Analysis and Visualisation}, booktitle = {Computational Methods in Systems Biology - 10th International Conference, {CMSB} 2012, London, UK, October 3-5, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7605}, pages = {382--385}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33636-2\_26}, doi = {10.1007/978-3-642-33636-2\_26}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/LaihoKG12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/MarcoSCGAMS12, author = {David Marco and Erin Scott and David E. Cairns and Andrea Graham and Judi Allen and Simmi Mahajan and Carron Shankland}, editor = {David R. Gilbert and Monika Heiner}, title = {Investigating Co-infection Dynamics through Evolution of Bio-PEPA Model Parameters: {A} Combined Process Algebra and Evolutionary Computing Approach}, booktitle = {Computational Methods in Systems Biology - 10th International Conference, {CMSB} 2012, London, UK, October 3-5, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7605}, pages = {227--246}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33636-2\_14}, doi = {10.1007/978-3-642-33636-2\_14}, timestamp = {Wed, 08 Dec 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/MarcoSCGAMS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Martinez-del-AmorPGEP12, author = {Miguel A. Mart{\'{\i}}nez{-}del{-}Amor and Ignacio P{\'{e}}rez{-}Hurtado and Adolfo Gastalver{-}Rubio and Anne C. Elster and Mario J. P{\'{e}}rez{-}Jim{\'{e}}nez}, editor = {David R. Gilbert and Monika Heiner}, title = {Population Dynamics {P} Systems on {CUDA}}, booktitle = {Computational Methods in Systems Biology - 10th International Conference, {CMSB} 2012, London, UK, October 3-5, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7605}, pages = {247--266}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33636-2\_15}, doi = {10.1007/978-3-642-33636-2\_15}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/Martinez-del-AmorPGEP12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/MurthyIBCFGSG12, author = {Abhishek Murthy and Md. Ariful Islam and Ezio Bartocci and Elizabeth Cherry and Flavio H. Fenton and James Glimm and Scott A. Smolka and Radu Grosu}, editor = {David R. Gilbert and Monika Heiner}, title = {Approximate Bisimulations for Sodium Channel Dynamics}, booktitle = {Computational Methods in Systems Biology - 10th International Conference, {CMSB} 2012, London, UK, October 3-5, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7605}, pages = {267--287}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33636-2\_16}, doi = {10.1007/978-3-642-33636-2\_16}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/MurthyIBCFGSG12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/NaldiMC12, author = {Aur{\'{e}}lien Naldi and Pedro T. Monteiro and Claudine Chaouiya}, editor = {David R. Gilbert and Monika Heiner}, title = {Efficient Handling of Large Signalling-Regulatory Networks by Focusing on Their Core Control}, booktitle = {Computational Methods in Systems Biology - 10th International Conference, {CMSB} 2012, London, UK, October 3-5, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7605}, pages = {288--306}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33636-2\_17}, doi = {10.1007/978-3-642-33636-2\_17}, timestamp = {Thu, 04 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/NaldiMC12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Noble12, author = {Denis Noble}, editor = {David R. Gilbert and Monika Heiner}, title = {Differential and Integral Views of Gene-Phenotype Relations: {A} Systems Biological Insight}, booktitle = {Computational Methods in Systems Biology - 10th International Conference, {CMSB} 2012, London, UK, October 3-5, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7605}, pages = {1}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33636-2\_1}, doi = {10.1007/978-3-642-33636-2\_1}, timestamp = {Tue, 26 Jun 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/Noble12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/PotapovMYR12, author = {Ilya Potapov and Jarno M{\"{a}}kel{\"{a}} and Olli Yli{-}Harja and Andre S. Ribeiro}, editor = {David R. Gilbert and Monika Heiner}, title = {Sequence Dependent Properties of the Expression Dynamics of Genes and Gene Networks}, booktitle = {Computational Methods in Systems Biology - 10th International Conference, {CMSB} 2012, London, UK, October 3-5, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7605}, pages = {307--321}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33636-2\_18}, doi = {10.1007/978-3-642-33636-2\_18}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/PotapovMYR12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/PotapovV12, author = {Ilya Potapov and Evgenii I. Volkov}, editor = {David R. Gilbert and Monika Heiner}, title = {Effects of Molecular Noise on the Multistability in a Synthetic Genetic Oscillator}, booktitle = {Computational Methods in Systems Biology - 10th International Conference, {CMSB} 2012, London, UK, October 3-5, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7605}, pages = {386--389}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33636-2\_27}, doi = {10.1007/978-3-642-33636-2\_27}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/PotapovV12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/SankaranarayananF12, author = {Sriram Sankaranarayanan and Georgios Fainekos}, editor = {David R. Gilbert and Monika Heiner}, title = {Simulating Insulin Infusion Pump Risks by In-Silico Modeling of the Insulin-Glucose Regulatory System}, booktitle = {Computational Methods in Systems Biology - 10th International Conference, {CMSB} 2012, London, UK, October 3-5, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7605}, pages = {322--341}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33636-2\_19}, doi = {10.1007/978-3-642-33636-2\_19}, timestamp = {Fri, 13 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/SankaranarayananF12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/SoldatovaGG12, author = {Larisa N. Soldatova and Qian Gao and David R. Gilbert}, editor = {David R. Gilbert and Monika Heiner}, title = {Towards an Ontology of Biomodelling}, booktitle = {Computational Methods in Systems Biology - 10th International Conference, {CMSB} 2012, London, UK, October 3-5, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7605}, pages = {390--393}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33636-2\_28}, doi = {10.1007/978-3-642-33636-2\_28}, timestamp = {Wed, 04 Jul 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/SoldatovaGG12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/VidelaGETGSS12, author = {Santiago Videla and Carito Guziolowski and Federica Eduati and Sven Thiele and Niels Grabe and Julio Saez{-}Rodriguez and Anne Siegel}, editor = {David R. Gilbert and Monika Heiner}, title = {Revisiting the Training of Logic Models of Protein Signaling Networks with {ASP}}, booktitle = {Computational Methods in Systems Biology - 10th International Conference, {CMSB} 2012, London, UK, October 3-5, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7605}, pages = {342--361}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33636-2\_20}, doi = {10.1007/978-3-642-33636-2\_20}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/VidelaGETGSS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/cmsb/2012, editor = {David R. Gilbert and Monika Heiner}, title = {Computational Methods in Systems Biology - 10th International Conference, {CMSB} 2012, London, UK, October 3-5, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7605}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33636-2}, doi = {10.1007/978-3-642-33636-2}, isbn = {978-3-642-33635-5}, timestamp = {Tue, 14 May 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/2012.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/AngiusH11, author = {Alessio Angius and Andr{\'{a}}s Horv{\'{a}}th}, editor = {Fran{\c{c}}ois Fages}, title = {Analysis of stochastic reaction networks with Markov reward models}, booktitle = {Computational Methods in Systems Biology, 9th International Conference, {CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings}, pages = {45--54}, publisher = {{ACM}}, year = {2011}, url = {https://doi.org/10.1145/2037509.2037517}, doi = {10.1145/2037509.2037517}, timestamp = {Sun, 02 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/AngiusH11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BartocciCGGSF11, author = {Ezio Bartocci and Elizabeth Cherry and James Glimm and Radu Grosu and Scott A. Smolka and Flavio H. Fenton}, editor = {Fran{\c{c}}ois Fages}, title = {Toward real-time simulation of cardiac dynamics}, booktitle = {Computational Methods in Systems Biology, 9th International Conference, {CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings}, pages = {103--112}, publisher = {{ACM}}, year = {2011}, url = {https://doi.org/10.1145/2037509.2037525}, doi = {10.1145/2037509.2037525}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BartocciCGGSF11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BittigHMU11, author = {Arne T. Bittig and Fiete Haack and Carsten Maus and Adelinde M. Uhrmacher}, editor = {Fran{\c{c}}ois Fages}, title = {Adapting rule-based model descriptions for simulating in continuous and hybrid space}, booktitle = {Computational Methods in Systems Biology, 9th International Conference, {CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings}, pages = {161--170}, publisher = {{ACM}}, year = {2011}, url = {https://doi.org/10.1145/2037509.2037533}, doi = {10.1145/2037509.2037533}, timestamp = {Tue, 06 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/BittigHMU11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BurkittWRF11, author = {Mark Burkitt and Dawn C. Walker and Daniela M. Romano and Alireza Fazeli}, editor = {Fran{\c{c}}ois Fages}, title = {Modelling sperm behaviour in a 3D environment}, booktitle = {Computational Methods in Systems Biology, 9th International Conference, {CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings}, pages = {141--149}, publisher = {{ACM}}, year = {2011}, url = {https://doi.org/10.1145/2037509.2037531}, doi = {10.1145/2037509.2037531}, timestamp = {Mon, 16 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BurkittWRF11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/CardelliL11, author = {Luca Cardelli and Cosimo Laneve}, editor = {Fran{\c{c}}ois Fages}, title = {Reversible structures}, booktitle = {Computational Methods in Systems Biology, 9th International Conference, {CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings}, pages = {131--140}, publisher = {{ACM}}, year = {2011}, url = {https://doi.org/10.1145/2037509.2037529}, doi = {10.1145/2037509.2037529}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/CardelliL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/CzeizlerRP11, author = {Eugen Czeizler and Vladimir Rogojin and Ion Petre}, editor = {Fran{\c{c}}ois Fages}, title = {The phosphorylation of the heat shock factor as a modulator for the heat shock response}, booktitle = {Computational Methods in Systems Biology, 9th International Conference, {CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings}, pages = {9--23}, publisher = {{ACM}}, year = {2011}, url = {https://doi.org/10.1145/2037509.2037513}, doi = {10.1145/2037509.2037513}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/CzeizlerRP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/DarribaTDP11, author = {Diego Darriba and Guillermo L. Taboada and Ramon Doallo and David Posada}, editor = {Fran{\c{c}}ois Fages}, title = {{HPC} selection of models of {DNA} substitution}, booktitle = {Computational Methods in Systems Biology, 9th International Conference, {CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings}, pages = {65--72}, publisher = {{ACM}}, year = {2011}, url = {https://doi.org/10.1145/2037509.2037520}, doi = {10.1145/2037509.2037520}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/DarribaTDP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/DegasperiC11, author = {Andrea Degasperi and Muffy Calder}, editor = {Fran{\c{c}}ois Fages}, title = {Multi-scale modelling of biological systems in process algebra with multi-way synchronisation}, booktitle = {Computational Methods in Systems Biology, 9th International Conference, {CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings}, pages = {195--208}, publisher = {{ACM}}, year = {2011}, url = {https://doi.org/10.1145/2037509.2037537}, doi = {10.1145/2037509.2037537}, timestamp = {Sun, 02 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/DegasperiC11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/DemongeotS11, author = {Jacques Demongeot and Sylvain Sen{\'{e}}}, editor = {Fran{\c{c}}ois Fages}, title = {The singular power of the environment on stochastic nonlinear threshold Boolean automata networks}, booktitle = {Computational Methods in Systems Biology, 9th International Conference, {CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings}, pages = {55--64}, publisher = {{ACM}}, year = {2011}, url = {https://doi.org/10.1145/2037509.2037518}, doi = {10.1145/2037509.2037518}, timestamp = {Tue, 06 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/DemongeotS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/FalkOEKK11, author = {Martin Falk and Michael Ott and Thomas Ertl and Michael Klann and Heinz Koeppl}, editor = {Fran{\c{c}}ois Fages}, title = {Parallelized agent-based simulation on {CPU} and graphics hardware for spatial and stochastic models in biology}, booktitle = {Computational Methods in Systems Biology, 9th International Conference, {CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings}, pages = {73--82}, publisher = {{ACM}}, year = {2011}, url = {https://doi.org/10.1145/2037509.2037521}, doi = {10.1145/2037509.2037521}, timestamp = {Thu, 08 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/FalkOEKK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/GaoLGHT11, author = {Qian Gao and Fei Liu and David R. Gilbert and Monika Heiner and David Tree}, editor = {Fran{\c{c}}ois Fages}, title = {A multiscale approach to modelling planar cell polarity in Drosophila wing using hierarchically coloured Petri nets}, booktitle = {Computational Methods in Systems Biology, 9th International Conference, {CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings}, pages = {209--218}, publisher = {{ACM}}, year = {2011}, url = {https://doi.org/10.1145/2037509.2037538}, doi = {10.1145/2037509.2037538}, timestamp = {Sun, 02 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/GaoLGHT11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/GaoTT11, author = {Xuefeng Gao and Sabin Tabirca and Mark Tangney}, editor = {Fran{\c{c}}ois Fages}, title = {Computer simulation of Salmonella typhimurium accumulation within tumors}, booktitle = {Computational Methods in Systems Biology, 9th International Conference, {CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings}, pages = {113--119}, publisher = {{ACM}}, year = {2011}, url = {https://doi.org/10.1145/2037509.2037526}, doi = {10.1145/2037509.2037526}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/GaoTT11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/HenzingerM11, author = {Thomas A. Henzinger and Maria Mateescu}, editor = {Fran{\c{c}}ois Fages}, title = {Propagation models for computing biochemical reaction networks}, booktitle = {Computational Methods in Systems Biology, 9th International Conference, {CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings}, pages = {1--3}, publisher = {{ACM}}, year = {2011}, url = {https://doi.org/10.1145/2037509.2037510}, doi = {10.1145/2037509.2037510}, timestamp = {Tue, 06 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/HenzingerM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/KlarnerSB11, author = {Hannes Klarner and Heike Siebert and Alexander Bockmayr}, editor = {Fran{\c{c}}ois Fages}, title = {Parameter inference for asynchronous logical networks using discrete time series}, booktitle = {Computational Methods in Systems Biology, 9th International Conference, {CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings}, pages = {121--130}, publisher = {{ACM}}, year = {2011}, url = {https://doi.org/10.1145/2037509.2037528}, doi = {10.1145/2037509.2037528}, timestamp = {Tue, 06 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/KlarnerSB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/KuwaharaG11, author = {Hiroyuki Kuwahara and Xin Gao}, editor = {Fran{\c{c}}ois Fages}, title = {An efficient parallel stochastic simulation method for analysis of nonviral gene delivery systems}, booktitle = {Computational Methods in Systems Biology, 9th International Conference, {CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings}, pages = {83--93}, publisher = {{ACM}}, year = {2011}, url = {https://doi.org/10.1145/2037509.2037522}, doi = {10.1145/2037509.2037522}, timestamp = {Tue, 06 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/KuwaharaG11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/MendesSS11, author = {Pedro Mendes and Natalie J. Stanford and Kieran Smallbone}, editor = {Fran{\c{c}}ois Fages}, title = {Kinetic modelling of large-scale metabolic networks}, booktitle = {Computational Methods in Systems Biology, 9th International Conference, {CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings}, pages = {5--6}, publisher = {{ACM}}, year = {2011}, url = {https://doi.org/10.1145/2037509.2037511}, doi = {10.1145/2037509.2037511}, timestamp = {Tue, 05 Nov 2019 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/MendesSS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/MurthyBFGGSG11, author = {Abhishek Murthy and Ezio Bartocci and Flavio H. Fenton and James Glimm and Richard A. Gray and Scott A. Smolka and Radu Grosu}, editor = {Fran{\c{c}}ois Fages}, title = {Curvature analysis of cardiac excitation wavefronts}, booktitle = {Computational Methods in Systems Biology, 9th International Conference, {CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings}, pages = {151--160}, publisher = {{ACM}}, year = {2011}, url = {https://doi.org/10.1145/2037509.2037532}, doi = {10.1145/2037509.2037532}, timestamp = {Tue, 06 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/MurthyBFGGSG11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/OmonyMGSB11, author = {Jimmy Omony and Astrid R. Mach{-}Aigner and Leo H. de Graaff and Gerrit van Straten and Anton J. B. van Boxtel}, editor = {Fran{\c{c}}ois Fages}, title = {Evaluation of design strategies for time course experiments in genetic networks: the XlnR regulon in \emph{Aspergillus niger}}, booktitle = {Computational Methods in Systems Biology, 9th International Conference, {CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings}, pages = {25--33}, publisher = {{ACM}}, year = {2011}, url = {https://doi.org/10.1145/2037509.2037514}, doi = {10.1145/2037509.2037514}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/OmonyMGSB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/OuryP11, author = {Nicolas Oury and Gordon D. Plotkin}, editor = {Fran{\c{c}}ois Fages}, title = {Coloured stochastic multilevel multiset rewriting}, booktitle = {Computational Methods in Systems Biology, 9th International Conference, {CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings}, pages = {171--181}, publisher = {{ACM}}, year = {2011}, url = {https://doi.org/10.1145/2037509.2037534}, doi = {10.1145/2037509.2037534}, timestamp = {Tue, 06 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/OuryP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/PalaniappanAGT11, author = {Sucheendra K. Palaniappan and S. Akshay and Blaise Genest and P. S. Thiagarajan}, editor = {Fran{\c{c}}ois Fages}, title = {A hybrid factored frontier algorithm for dynamic Bayesian network models of biopathways}, booktitle = {Computational Methods in Systems Biology, 9th International Conference, {CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings}, pages = {35--44}, publisher = {{ACM}}, year = {2011}, url = {https://doi.org/10.1145/2037509.2037516}, doi = {10.1145/2037509.2037516}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/PalaniappanAGT11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/PaolettiLMV11, author = {Nicola Paoletti and Pietro Li{\`{o}} and Emanuela Merelli and Marco Viceconti}, editor = {Fran{\c{c}}ois Fages}, title = {Osteoporosis: a multiscale modeling viewpoint}, booktitle = {Computational Methods in Systems Biology, 9th International Conference, {CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings}, pages = {183--193}, publisher = {{ACM}}, year = {2011}, url = {https://doi.org/10.1145/2037509.2037536}, doi = {10.1145/2037509.2037536}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/PaolettiLMV11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Sanchez-LinaresSGCG11, author = {Irene S{\'{a}}nchez{-}Linares and Horacio Emilio P{\'{e}}rez S{\'{a}}nchez and Gin{\'{e}}s D. Guerrero and Jos{\'{e}} M. Cecilia and Jos{\'{e}} M. Garc{\'{\i}}a}, editor = {Fran{\c{c}}ois Fages}, title = {Accelerating multiple target drug screening on GPUs}, booktitle = {Computational Methods in Systems Biology, 9th International Conference, {CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings}, pages = {95--102}, publisher = {{ACM}}, year = {2011}, url = {https://doi.org/10.1145/2037509.2037523}, doi = {10.1145/2037509.2037523}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/Sanchez-LinaresSGCG11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Thieffry11, author = {Denis Thieffry}, editor = {Fran{\c{c}}ois Fages}, title = {Logical modelling of haematopoietic cell fate reprogramming}, booktitle = {Computational Methods in Systems Biology, 9th International Conference, {CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings}, pages = {7}, publisher = {{ACM}}, year = {2011}, url = {https://doi.org/10.1145/2037509.2037512}, doi = {10.1145/2037509.2037512}, timestamp = {Tue, 06 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/Thieffry11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/cmsb/2011, editor = {Fran{\c{c}}ois Fages}, title = {Computational Methods in Systems Biology, 9th International Conference, {CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings}, publisher = {{ACM}}, year = {2011}, isbn = {978-1-4503-0817-5}, timestamp = {Sun, 04 Dec 2011 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/2011.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/CalderADD10, author = {Muffy Calder and Oana Andrei and Andrea Degasperi and Robin Donaldson}, editor = {Paola Quaglia}, title = {From species to pathway and tissue as process}, booktitle = {Computational Methods in Systems Biology, 8th International Conference, {CMSB} 2010, Trento, Italy, September 29 - October 1, 2010. Proceedings}, pages = {1--2}, publisher = {{ACM}}, year = {2010}, url = {https://doi.org/10.1145/1839764.1839765}, doi = {10.1145/1839764.1839765}, timestamp = {Tue, 06 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/CalderADD10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/ClarkGGK10, author = {Allan Clark and Stephen Gilmore and Maria Luisa Guerriero and Peter Kemper}, editor = {Paola Quaglia}, title = {On verifying Bio-PEPA models}, booktitle = {Computational Methods in Systems Biology, 8th International Conference, {CMSB} 2010, Trento, Italy, September 29 - October 1, 2010. Proceedings}, pages = {23--32}, publisher = {{ACM}}, year = {2010}, url = {https://doi.org/10.1145/1839764.1839769}, doi = {10.1145/1839764.1839769}, timestamp = {Tue, 06 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/ClarkGGK10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/DelaplaceKC10, author = {Franck Delaplace and Hanna Klaudel and Amandine Cartier{-}Michaud}, editor = {Paola Quaglia}, title = {Discrete causal model view of biological networks}, booktitle = {Computational Methods in Systems Biology, 8th International Conference, {CMSB} 2010, Trento, Italy, September 29 - October 1, 2010. Proceedings}, pages = {4--13}, publisher = {{ACM}}, year = {2010}, url = {https://doi.org/10.1145/1839764.1839767}, doi = {10.1145/1839764.1839767}, timestamp = {Tue, 06 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/DelaplaceKC10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/DonaldsonTKC10, author = {Robin Donaldson and Carolyn L. Talcott and Merrill Knapp and Muffy Calder}, editor = {Paola Quaglia}, title = {Understanding signalling networks as collections of signal transduction pathways}, booktitle = {Computational Methods in Systems Biology, 8th International Conference, {CMSB} 2010, Trento, Italy, September 29 - October 1, 2010. Proceedings}, pages = {86--95}, publisher = {{ACM}}, year = {2010}, url = {https://doi.org/10.1145/1839764.1839775}, doi = {10.1145/1839764.1839775}, timestamp = {Sun, 02 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/DonaldsonTKC10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/HeinerRSS10, author = {Monika Heiner and Christian Rohr and Martin Schwarick and Stefan Streif}, editor = {Paola Quaglia}, title = {A comparative study of stochastic analysis techniques}, booktitle = {Computational Methods in Systems Biology, 8th International Conference, {CMSB} 2010, Trento, Italy, September 29 - October 1, 2010. Proceedings}, pages = {96--106}, publisher = {{ACM}}, year = {2010}, url = {https://doi.org/10.1145/1839764.1839776}, doi = {10.1145/1839764.1839776}, timestamp = {Wed, 25 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/HeinerRSS10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/HenzingerMMW10, author = {Thomas A. Henzinger and Linar Mikeev and Maria Mateescu and Verena Wolf}, editor = {Paola Quaglia}, title = {Hybrid numerical solution of the chemical master equation}, booktitle = {Computational Methods in Systems Biology, 8th International Conference, {CMSB} 2010, Trento, Italy, September 29 - October 1, 2010. Proceedings}, pages = {55--65}, publisher = {{ACM}}, year = {2010}, url = {https://doi.org/10.1145/1839764.1839772}, doi = {10.1145/1839764.1839772}, timestamp = {Tue, 06 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/HenzingerMMW10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/KattasGW10, author = {Graciano Dieck Kattas and Peter Gennemark and Dag Wedelin}, editor = {Paola Quaglia}, title = {Structural identification of {GMA} models: algorithm and model comparison}, booktitle = {Computational Methods in Systems Biology, 8th International Conference, {CMSB} 2010, Trento, Italy, September 29 - October 1, 2010. Proceedings}, pages = {107--113}, publisher = {{ACM}}, year = {2010}, url = {https://doi.org/10.1145/1839764.1839777}, doi = {10.1145/1839764.1839777}, timestamp = {Tue, 06 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/KattasGW10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/KrauseKV10, author = {Christian Krause and Carola Krause and Erik P. de Vink}, editor = {Paola Quaglia}, title = {Action-based analysis of discrete regulatory networks with short-term stimuli}, booktitle = {Computational Methods in Systems Biology, 8th International Conference, {CMSB} 2010, Trento, Italy, September 29 - October 1, 2010. Proceedings}, pages = {66--75}, publisher = {{ACM}}, year = {2010}, url = {https://doi.org/10.1145/1839764.1839773}, doi = {10.1145/1839764.1839773}, timestamp = {Tue, 06 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/KrauseKV10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Mansy10, author = {Sheref S. Mansy}, editor = {Paola Quaglia}, title = {Building cell-like structures from the bottom-up}, booktitle = {Computational Methods in Systems Biology, 8th International Conference, {CMSB} 2010, Trento, Italy, September 29 - October 1, 2010. Proceedings}, pages = {3}, publisher = {{ACM}}, year = {2010}, url = {https://doi.org/10.1145/1839764.1839766}, doi = {10.1145/1839764.1839766}, timestamp = {Sun, 02 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/Mansy10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/NabliS10, author = {Faten Nabli and Sylvain Soliman}, editor = {Paola Quaglia}, title = {Steady-state solution of biochemical systems, beyond S-systems via T-invariants}, booktitle = {Computational Methods in Systems Biology, 8th International Conference, {CMSB} 2010, Trento, Italy, September 29 - October 1, 2010. Proceedings}, pages = {14--22}, publisher = {{ACM}}, year = {2010}, url = {https://doi.org/10.1145/1839764.1839768}, doi = {10.1145/1839764.1839768}, timestamp = {Tue, 06 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/NabliS10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/PauleveYLP10, author = {Lo{\"{\i}}c Paulev{\'{e}} and Simon Youssef and Matthew R. Lakin and Andrew Phillips}, editor = {Paola Quaglia}, title = {A generic abstract machine for stochastic process calculi}, booktitle = {Computational Methods in Systems Biology, 8th International Conference, {CMSB} 2010, Trento, Italy, September 29 - October 1, 2010. Proceedings}, pages = {43--54}, publisher = {{ACM}}, year = {2010}, url = {https://doi.org/10.1145/1839764.1839771}, doi = {10.1145/1839764.1839771}, timestamp = {Tue, 06 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/PauleveYLP10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/TwardziokSH10, author = {Sven Twardziok and Heike Siebert and Alexander Heyl}, editor = {Paola Quaglia}, title = {Stochasticity in reactions: a probabilistic Boolean modeling approach}, booktitle = {Computational Methods in Systems Biology, 8th International Conference, {CMSB} 2010, Trento, Italy, September 29 - October 1, 2010. Proceedings}, pages = {76--85}, publisher = {{ACM}}, year = {2010}, url = {https://doi.org/10.1145/1839764.1839774}, doi = {10.1145/1839764.1839774}, timestamp = {Sat, 19 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/TwardziokSH10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/WuGG10, author = {Zujian Wu and Qian Gao and David R. Gilbert}, editor = {Paola Quaglia}, title = {Target driven biochemical network reconstruction based on petri nets and simulated annealing}, booktitle = {Computational Methods in Systems Biology, 8th International Conference, {CMSB} 2010, Trento, Italy, September 29 - October 1, 2010. Proceedings}, pages = {33--42}, publisher = {{ACM}}, year = {2010}, url = {https://doi.org/10.1145/1839764.1839770}, doi = {10.1145/1839764.1839770}, timestamp = {Tue, 06 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/WuGG10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/cmsb/2010, editor = {Paola Quaglia}, title = {Computational Methods in Systems Biology, 8th International Conference, {CMSB} 2010, Trento, Italy, September 29 - October 1, 2010. Proceedings}, publisher = {{ACM}}, year = {2010}, url = {http://portal.acm.org/citation.cfm?id=1839764}, isbn = {978-1-4503-0068-1}, timestamp = {Fri, 06 Jan 2012 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/2010.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/AkmanCDG09, author = {Ozgur E. Akman and Federica Ciocchetta and Andrea Degasperi and Maria Luisa Guerriero}, editor = {Pierpaolo Degano and Roberto Gorrieri}, title = {Modelling Biological Clocks with Bio-PEPA: Stochasticity and Robustness for the \emph{Neurospora crassa} Circadian Network}, booktitle = {Computational Methods in Systems Biology, 7th International Conference, {CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5688}, pages = {52--67}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-03845-7\_4}, doi = {10.1007/978-3-642-03845-7\_4}, timestamp = {Tue, 14 May 2019 10:00:49 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/AkmanCDG09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BaggiBF09, author = {Michele Baggi and Demis Ballis and Moreno Falaschi}, editor = {Pierpaolo Degano and Roberto Gorrieri}, title = {Quantitative Pathway Logic for Computational Biology}, booktitle = {Computational Methods in Systems Biology, 7th International Conference, {CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5688}, pages = {68--82}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-03845-7\_5}, doi = {10.1007/978-3-642-03845-7\_5}, timestamp = {Sun, 25 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BaggiBF09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Bailly-BechetBZ09, author = {Marc Bailly{-}Bechet and Alfredo Braunstein and Riccardo Zecchina}, editor = {Pierpaolo Degano and Roberto Gorrieri}, title = {A Prize-Collecting Steiner Tree Approach for Transduction Network Inference}, booktitle = {Computational Methods in Systems Biology, 7th International Conference, {CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5688}, pages = {83--95}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-03845-7\_6}, doi = {10.1007/978-3-642-03845-7\_6}, timestamp = {Sun, 02 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/Bailly-BechetBZ09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BartoliMRFC09, author = {Lisa Bartoli and Pier Luigi Martelli and Ivan Rossi and Piero Fariselli and Rita Casadio}, editor = {Pierpaolo Degano and Roberto Gorrieri}, title = {Prediction of Protein-Protein Interacting Sites: How to Bridge Molecular Events to Large Scale Protein Interaction Networks}, booktitle = {Computational Methods in Systems Biology, 7th International Conference, {CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5688}, pages = {1--17}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-03845-7\_1}, doi = {10.1007/978-3-642-03845-7\_1}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/BartoliMRFC09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BellaL09, author = {Giampaolo Bella and Pietro Li{\`{o}}}, editor = {Pierpaolo Degano and Roberto Gorrieri}, title = {Formal Analysis of the Genetic Toggle}, booktitle = {Computational Methods in Systems Biology, 7th International Conference, {CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5688}, pages = {96--110}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-03845-7\_7}, doi = {10.1007/978-3-642-03845-7\_7}, timestamp = {Sat, 19 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BellaL09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/CzeizlerCBP09, author = {Elena Czeizler and Eugen Czeizler and Ralph{-}Johan Back and Ion Petre}, editor = {Pierpaolo Degano and Roberto Gorrieri}, title = {Control Strategies for the Regulation of the Eukaryotic Heat Shock Response}, booktitle = {Computational Methods in Systems Biology, 7th International Conference, {CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5688}, pages = {111--125}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-03845-7\_8}, doi = {10.1007/978-3-642-03845-7\_8}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/CzeizlerCBP09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/DangGM09, author = {Thao Dang and Colas Le Guernic and Oded Maler}, editor = {Pierpaolo Degano and Roberto Gorrieri}, title = {Computing Reachable States for Nonlinear Biological Models}, booktitle = {Computational Methods in Systems Biology, 7th International Conference, {CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5688}, pages = {126--141}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-03845-7\_9}, doi = {10.1007/978-3-642-03845-7\_9}, timestamp = {Tue, 03 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/DangGM09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/DelzannoGGLZ09, author = {Giorgio Delzanno and Cinzia Di Giusto and Maurizio Gabbrielli and Cosimo Laneve and Gianluigi Zavattaro}, editor = {Pierpaolo Degano and Roberto Gorrieri}, title = {The \emph{kappa}-Lattice: Decidability Boundaries for Qualitative Analysis in Biological Languages}, booktitle = {Computational Methods in Systems Biology, 7th International Conference, {CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5688}, pages = {158--172}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-03845-7\_11}, doi = {10.1007/978-3-642-03845-7\_11}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/DelzannoGGLZ09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/DidierHMW09, author = {Fr{\'{e}}d{\'{e}}ric Didier and Thomas A. Henzinger and Maria Mateescu and Verena Wolf}, editor = {Pierpaolo Degano and Roberto Gorrieri}, title = {Approximation of Event Probabilities in Noisy Cellular Processes}, booktitle = {Computational Methods in Systems Biology, 7th International Conference, {CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5688}, pages = {173--188}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-03845-7\_12}, doi = {10.1007/978-3-642-03845-7\_12}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/DidierHMW09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/GalpinH09, author = {Vashti Galpin and Jane Hillston}, editor = {Pierpaolo Degano and Roberto Gorrieri}, title = {Equivalence and Discretisation in Bio-PEPA}, booktitle = {Computational Methods in Systems Biology, 7th International Conference, {CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5688}, pages = {189--204}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-03845-7\_13}, doi = {10.1007/978-3-642-03845-7\_13}, timestamp = {Fri, 02 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/GalpinH09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/GennemarkW09, author = {Peter Gennemark and Dag Wedelin}, editor = {Pierpaolo Degano and Roberto Gorrieri}, title = {Improved Parameter Estimation for Completely Observed Ordinary Differential Equations with Application to Biological Systems}, booktitle = {Computational Methods in Systems Biology, 7th International Conference, {CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5688}, pages = {205--217}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-03845-7\_14}, doi = {10.1007/978-3-642-03845-7\_14}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/GennemarkW09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Heath09, author = {John K. Heath}, editor = {Pierpaolo Degano and Roberto Gorrieri}, title = {The Equivalence between Biology and Computation}, booktitle = {Computational Methods in Systems Biology, 7th International Conference, {CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5688}, pages = {18--25}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-03845-7\_2}, doi = {10.1007/978-3-642-03845-7\_2}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/Heath09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/JhaCLLPZ09, author = {Sumit Kumar Jha and Edmund M. Clarke and Christopher James Langmead and Axel Legay and Andr{\'{e}} Platzer and Paolo Zuliani}, editor = {Pierpaolo Degano and Roberto Gorrieri}, title = {A Bayesian Approach to Model Checking Biological Systems}, booktitle = {Computational Methods in Systems Biology, 7th International Conference, {CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5688}, pages = {218--234}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-03845-7\_15}, doi = {10.1007/978-3-642-03845-7\_15}, timestamp = {Wed, 19 May 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/JhaCLLPZ09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/JohnLN09, author = {Mathias John and C{\'{e}}dric Lhoussaine and Joachim Niehren}, editor = {Pierpaolo Degano and Roberto Gorrieri}, title = {Dynamic Compartments in the Imperative \emph{pi}-Calculus}, booktitle = {Computational Methods in Systems Biology, 7th International Conference, {CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5688}, pages = {235--250}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-03845-7\_16}, doi = {10.1007/978-3-642-03845-7\_16}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/JohnLN09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/LiuTH09, author = {Bing Liu and P. S. Thiagarajan and David Hsu}, editor = {Pierpaolo Degano and Roberto Gorrieri}, title = {Probabilistic Approximations of Signaling Pathway Dynamics}, booktitle = {Computational Methods in Systems Biology, 7th International Conference, {CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5688}, pages = {251--265}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-03845-7\_17}, doi = {10.1007/978-3-642-03845-7\_17}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/LiuTH09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/MariaFS09, author = {Elisabetta De Maria and Fran{\c{c}}ois Fages and Sylvain Soliman}, editor = {Pierpaolo Degano and Roberto Gorrieri}, title = {On Coupling Models Using Model-Checking: Effects of Irinotecan Injections on the Mammalian Cell Cycle}, booktitle = {Computational Methods in Systems Biology, 7th International Conference, {CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5688}, pages = {142--157}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-03845-7\_10}, doi = {10.1007/978-3-642-03845-7\_10}, timestamp = {Fri, 02 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/MariaFS09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/NaldiRTC09, author = {Aur{\'{e}}lien Naldi and Elisabeth Remy and Denis Thieffry and Claudine Chaouiya}, editor = {Pierpaolo Degano and Roberto Gorrieri}, title = {A Reduction of Logical Regulatory Graphs Preserving Essential Dynamical Properties}, booktitle = {Computational Methods in Systems Biology, 7th International Conference, {CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5688}, pages = {266--280}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-03845-7\_18}, doi = {10.1007/978-3-642-03845-7\_18}, timestamp = {Sun, 02 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/NaldiRTC09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/NapioneMCHPPPSVBB09, author = {Lucia Napione and Daniele Manini and Francesca Cordero and Andr{\'{a}}s Horv{\'{a}}th and Andrea Picco and Massimiliano De Pierro and Simona Pavan and Matteo Sereno and Andrea Veglio and Federico Bussolino and Gianfranco Balbo}, editor = {Pierpaolo Degano and Roberto Gorrieri}, title = {On the Use of Stochastic Petri Nets in the Analysis of Signal Transduction Pathways for Angiogenesis Process}, booktitle = {Computational Methods in Systems Biology, 7th International Conference, {CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5688}, pages = {281--295}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-03845-7\_19}, doi = {10.1007/978-3-642-03845-7\_19}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/NapioneMCHPPPSVBB09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/PriamiBQ09, author = {Corrado Priami and Paolo Ballarini and Paola Quaglia}, editor = {Pierpaolo Degano and Roberto Gorrieri}, title = {BlenX4Bio - BlenX for Biologists}, booktitle = {Computational Methods in Systems Biology, 7th International Conference, {CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5688}, pages = {26--51}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-03845-7\_3}, doi = {10.1007/978-3-642-03845-7\_3}, timestamp = {Fri, 02 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/PriamiBQ09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/SchwarickH09, author = {Martin Schwarick and Monika Heiner}, editor = {Pierpaolo Degano and Roberto Gorrieri}, title = {{CSL} Model Checking of Biochemical Networks with Interval Decision Diagrams}, booktitle = {Computational Methods in Systems Biology, 7th International Conference, {CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5688}, pages = {296--312}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-03845-7\_20}, doi = {10.1007/978-3-642-03845-7\_20}, timestamp = {Sun, 02 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/SchwarickH09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/SoueidanSN09, author = {Hayssam Soueidan and Gr{\'{e}}goire Sutre and Macha Nikolski}, editor = {Pierpaolo Degano and Roberto Gorrieri}, title = {Qualitative Transition Systems for the Abstraction and Comparison of Transient Behavior in Parametrized Dynamic Models}, booktitle = {Computational Methods in Systems Biology, 7th International Conference, {CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5688}, pages = {313--327}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-03845-7\_21}, doi = {10.1007/978-3-642-03845-7\_21}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/SoueidanSN09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/cmsb/2009, editor = {Pierpaolo Degano and Roberto Gorrieri}, title = {Computational Methods in Systems Biology, 7th International Conference, {CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5688}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-03845-7}, doi = {10.1007/978-3-642-03845-7}, isbn = {978-3-642-03844-0}, timestamp = {Tue, 14 May 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/2009.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BosnackiESV08, author = {Dragan Bosnacki and Huub M. M. ten Eikelder and Marvin N. Steijaert and Erik P. de Vink}, editor = {Monika Heiner and Adelinde M. Uhrmacher}, title = {Stochastic Analysis of Amino Acid Substitution in Protein Synthesis}, booktitle = {Computational Methods in Systems Biology, 6th International Conference, {CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5307}, pages = {367--386}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-88562-7\_25}, doi = {10.1007/978-3-540-88562-7\_25}, timestamp = {Tue, 14 May 2019 10:00:49 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BosnackiESV08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/ClarkeFLHJL08, author = {Edmund M. Clarke and James R. Faeder and Christopher James Langmead and Leonard A. Harris and Sumit Kumar Jha and Axel Legay}, editor = {Monika Heiner and Adelinde M. Uhrmacher}, title = {Statistical Model Checking in BioLab: Applications to the Automated Analysis of T-Cell Receptor Signaling Pathway}, booktitle = {Computational Methods in Systems Biology, 6th International Conference, {CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5307}, pages = {231--250}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-88562-7\_18}, doi = {10.1007/978-3-540-88562-7\_18}, timestamp = {Wed, 19 May 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/ClarkeFLHJL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/DematteM08, author = {Lorenzo Dematt{\'{e}} and Tommaso Mazza}, editor = {Monika Heiner and Adelinde M. Uhrmacher}, title = {On Parallel Stochastic Simulation of Diffusive Systems}, booktitle = {Computational Methods in Systems Biology, 6th International Conference, {CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5307}, pages = {191--210}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-88562-7\_16}, doi = {10.1007/978-3-540-88562-7\_16}, timestamp = {Sat, 19 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/DematteM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/DonaldsonG08, author = {Robin Donaldson and David R. Gilbert}, editor = {Monika Heiner and Adelinde M. Uhrmacher}, title = {A Model Checking Approach to the Parameter Estimation of Biochemical Pathways}, booktitle = {Computational Methods in Systems Biology, 6th International Conference, {CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5307}, pages = {269--287}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-88562-7\_20}, doi = {10.1007/978-3-540-88562-7\_20}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/DonaldsonG08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/DurzinskyWW08, author = {Markus Durzinsky and Annegret Wagler and Robert Weismantel}, editor = {Monika Heiner and Adelinde M. Uhrmacher}, title = {A Combinatorial Approach to Reconstruct Petri Nets from Experimental Data}, booktitle = {Computational Methods in Systems Biology, 6th International Conference, {CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5307}, pages = {328--346}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-88562-7\_23}, doi = {10.1007/978-3-540-88562-7\_23}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/DurzinskyWW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/HillstonCDG08, author = {Jane Hillston and Federica Ciocchetta and Adam Duguid and Stephen Gilmore}, editor = {Monika Heiner and Adelinde M. Uhrmacher}, title = {Integrated Analysis from Abstract Stochastic Process Algebra Models}, booktitle = {Computational Methods in Systems Biology, 6th International Conference, {CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5307}, pages = {2--4}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-88562-7\_2}, doi = {10.1007/978-3-540-88562-7\_2}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/HillstonCDG08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/JeschkeE08, author = {Matthias Jeschke and Roland Ewald}, editor = {Monika Heiner and Adelinde M. Uhrmacher}, title = {Large-Scale Design Space Exploration of {SSA}}, booktitle = {Computational Methods in Systems Biology, 6th International Conference, {CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5307}, pages = {211--230}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-88562-7\_17}, doi = {10.1007/978-3-540-88562-7\_17}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/JeschkeE08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/JohnLNU08, author = {Mathias John and C{\'{e}}dric Lhoussaine and Joachim Niehren and Adelinde M. Uhrmacher}, editor = {Monika Heiner and Adelinde M. Uhrmacher}, title = {The Attributed Pi Calculus}, booktitle = {Computational Methods in Systems Biology, 6th International Conference, {CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5307}, pages = {83--102}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-88562-7\_10}, doi = {10.1007/978-3-540-88562-7\_10}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/JohnLNU08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Jong08, author = {Hidde de Jong}, editor = {Monika Heiner and Adelinde M. Uhrmacher}, title = {Qualitative Modeling and Simulation of Bacterial Regulatory Networks}, booktitle = {Computational Methods in Systems Biology, 6th International Conference, {CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5307}, pages = {1}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-88562-7\_1}, doi = {10.1007/978-3-540-88562-7\_1}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/Jong08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/KohnN08, author = {Dagmar K{\"{o}}hn and Nicolas Le Nov{\`{e}}re}, editor = {Monika Heiner and Adelinde M. Uhrmacher}, title = {{SED-ML} - An {XML} Format for the Implementation of the {MIASE} Guidelines}, booktitle = {Computational Methods in Systems Biology, 6th International Conference, {CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5307}, pages = {176--190}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-88562-7\_15}, doi = {10.1007/978-3-540-88562-7\_15}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/KohnN08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/KrishnaG08, author = {Ritesh Krishna and Shuixia Guo}, editor = {Monika Heiner and Adelinde M. Uhrmacher}, title = {A Partial Granger Causality Approach to Explore Causal Networks Derived From Multi-parameter Data}, booktitle = {Computational Methods in Systems Biology, 6th International Conference, {CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5307}, pages = {9--27}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-88562-7\_6}, doi = {10.1007/978-3-540-88562-7\_6}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/KrishnaG08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/KwiatkowskiS08, author = {Marek Kwiatkowski and Ian Stark}, editor = {Monika Heiner and Adelinde M. Uhrmacher}, title = {The Continuous pi-Calculus: {A} Process Algebra for Biochemical Modelling}, booktitle = {Computational Methods in Systems Biology, 6th International Conference, {CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5307}, pages = {103--122}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-88562-7\_11}, doi = {10.1007/978-3-540-88562-7\_11}, timestamp = {Fri, 02 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/KwiatkowskiS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/LarhlimiB08, author = {Abdelhalim Larhlimi and Alexander Bockmayr}, editor = {Monika Heiner and Adelinde M. Uhrmacher}, title = {On Inner and Outer Descriptions of the Steady-State Flux Cone of a Metabolic Network}, booktitle = {Computational Methods in Systems Biology, 6th International Conference, {CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5307}, pages = {308--327}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-88562-7\_22}, doi = {10.1007/978-3-540-88562-7\_22}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/LarhlimiB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/LebiedzSF08, author = {Dirk Lebiedz and Dominik Skanda and Marc Fein}, editor = {Monika Heiner and Adelinde M. Uhrmacher}, title = {Automatic Complexity Analysis and Model Reduction of Nonlinear Biochemical Systems}, booktitle = {Computational Methods in Systems Biology, 6th International Conference, {CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5307}, pages = {123--140}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-88562-7\_12}, doi = {10.1007/978-3-540-88562-7\_12}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/LebiedzSF08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/LoeweH08, author = {Laurence Loewe and Jane Hillston}, editor = {Monika Heiner and Adelinde M. Uhrmacher}, title = {The Distribution of Mutational Effects on Fitness in a Simple Circadian Clock}, booktitle = {Computational Methods in Systems Biology, 6th International Conference, {CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5307}, pages = {156--175}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-88562-7\_14}, doi = {10.1007/978-3-540-88562-7\_14}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/LoeweH08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Maus08, author = {Carsten Maus}, editor = {Monika Heiner and Adelinde M. Uhrmacher}, title = {Component-Based Modelling of {RNA} Structure Folding}, booktitle = {Computational Methods in Systems Biology, 6th International Conference, {CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5307}, pages = {44--62}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-88562-7\_8}, doi = {10.1007/978-3-540-88562-7\_8}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/Maus08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Novere08, author = {Nicolas Le Nov{\`{e}}re}, editor = {Monika Heiner and Adelinde M. Uhrmacher}, title = {Multiscale Modelling of Neuronal Signalling}, booktitle = {Computational Methods in Systems Biology, 6th International Conference, {CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5307}, pages = {7}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-88562-7\_4}, doi = {10.1007/978-3-540-88562-7\_4}, timestamp = {Tue, 26 Jun 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/Novere08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Oesterhelt08, author = {Dieter Oesterhelt}, editor = {Monika Heiner and Adelinde M. Uhrmacher}, title = {Systems Biology of Halophilic Archaea}, booktitle = {Computational Methods in Systems Biology, 6th International Conference, {CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5307}, pages = {8}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-88562-7\_5}, doi = {10.1007/978-3-540-88562-7\_5}, timestamp = {Tue, 26 Jun 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/Oesterhelt08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Pedersen08, author = {Michael Pedersen}, editor = {Monika Heiner and Adelinde M. Uhrmacher}, title = {Compositional Definitions of Minimal Flows in Petri Nets}, booktitle = {Computational Methods in Systems Biology, 6th International Conference, {CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5307}, pages = {288--307}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-88562-7\_21}, doi = {10.1007/978-3-540-88562-7\_21}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/Pedersen08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/PedersenP08, author = {Michael Pedersen and Gordon D. Plotkin}, editor = {Monika Heiner and Adelinde M. Uhrmacher}, title = {A Language for Biochemical Systems}, booktitle = {Computational Methods in Systems Biology, 6th International Conference, {CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5307}, pages = {63--82}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-88562-7\_9}, doi = {10.1007/978-3-540-88562-7\_9}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/PedersenP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/RizkBFS08, author = {Aur{\'{e}}lien Rizk and Gr{\'{e}}gory Batt and Fran{\c{c}}ois Fages and Sylvain Soliman}, editor = {Monika Heiner and Adelinde M. Uhrmacher}, title = {On a Continuous Degree of Satisfaction of Temporal Logic Formulae with Applications to Systems Biology}, booktitle = {Computational Methods in Systems Biology, 6th International Conference, {CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5307}, pages = {251--268}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-88562-7\_19}, doi = {10.1007/978-3-540-88562-7\_19}, timestamp = {Fri, 02 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/RizkBFS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Takahashi08, author = {Koichi Takahashi}, editor = {Monika Heiner and Adelinde M. Uhrmacher}, title = {An Exact Brownian Dynamics Method for Cell Simulation}, booktitle = {Computational Methods in Systems Biology, 6th International Conference, {CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5307}, pages = {5--6}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-88562-7\_3}, doi = {10.1007/978-3-540-88562-7\_3}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/Takahashi08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Takahashi08a, author = {Ashish Tiwari and Carolyn L. Talcott}, editor = {Monika Heiner and Adelinde M. Uhrmacher}, title = {Analyzing a Discrete Model of Aplysia Central Pattern Generator}, booktitle = {Computational Methods in Systems Biology, 6th International Conference, {CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5307}, pages = {347--366}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-88562-7\_24}, doi = {10.1007/978-3-540-88562-7\_24}, timestamp = {Wed, 06 Nov 2019 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/Takahashi08a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/UllrichF08, author = {Alexander Ullrich and Christoph Flamm}, editor = {Monika Heiner and Adelinde M. Uhrmacher}, title = {Functional Evolution of Ribozyme-Catalyzed Metabolisms in a Graph-Based Toy-Universe}, booktitle = {Computational Methods in Systems Biology, 6th International Conference, {CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5307}, pages = {28--43}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-88562-7\_7}, doi = {10.1007/978-3-540-88562-7\_7}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/UllrichF08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/WathL08, author = {Richard Carl Van der Wath and Pietro Li{\`{o}}}, editor = {Monika Heiner and Adelinde M. Uhrmacher}, title = {A Stochastic Single Cell Based Model of BrdU Measured Hematopoietic Stem Cell Kinetics}, booktitle = {Computational Methods in Systems Biology, 6th International Conference, {CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5307}, pages = {387--401}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-88562-7\_26}, doi = {10.1007/978-3-540-88562-7\_26}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/WathL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/YeGSE08, author = {Pei Ye and Radu Grosu and Scott A. Smolka and Emilia Entcheva}, editor = {Monika Heiner and Adelinde M. Uhrmacher}, title = {Formal Analysis of Abnormal Excitation in Cardiac Tissue}, booktitle = {Computational Methods in Systems Biology, 6th International Conference, {CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5307}, pages = {141--155}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-88562-7\_13}, doi = {10.1007/978-3-540-88562-7\_13}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/YeGSE08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/cmsb/2008, editor = {Monika Heiner and Adelinde M. Uhrmacher}, title = {Computational Methods in Systems Biology, 6th International Conference, {CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5307}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-88562-7}, doi = {10.1007/978-3-540-88562-7}, isbn = {978-3-540-88561-0}, timestamp = {Tue, 14 May 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/2008.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BraccialiBCD07, author = {Andrea Bracciali and Marcello Brunelli and Enrico Cataldo and Pierpaolo Degano}, editor = {Muffy Calder and Stephen Gilmore}, title = {Expressive Models for Synaptic Plasticity}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2007, Edinburgh, Scotland, September 20-21, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4695}, pages = {152--167}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-75140-3\_11}, doi = {10.1007/978-3-540-75140-3\_11}, timestamp = {Tue, 14 May 2019 10:00:49 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BraccialiBCD07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BrownRWSENCSL07, author = {Martyn R. Brown and Paul Rees and Steve Wilks and Huw D. Summers and Rachel J. Errington and Kerenza L. Njoh and Sally C. Chappell and Paul J. Smith and James F. Leary}, editor = {Muffy Calder and Stephen Gilmore}, title = {Computational Simulation of Optical Tracking of Cell Populations Using Quantum Dot Fluorophores}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2007, Edinburgh, Scotland, September 20-21, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4695}, pages = {96--105}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-75140-3\_7}, doi = {10.1007/978-3-540-75140-3\_7}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BrownRWSENCSL07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/CiocchettaHKT07, author = {Federica Ciocchetta and Jane Hillston and Martin Kos and David Tollervey}, editor = {Muffy Calder and Stephen Gilmore}, title = {Modelling Yeast Pre-rRNA Processing}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2007, Edinburgh, Scotland, September 20-21, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4695}, pages = {32--47}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-75140-3\_3}, doi = {10.1007/978-3-540-75140-3\_3}, timestamp = {Sat, 19 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/CiocchettaHKT07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/CrediGLPSZ07, author = {Alberto Credi and Marco Garavelli and Cosimo Laneve and Sylvain Pradalier and Serena Silvi and Gianluigi Zavattaro}, editor = {Muffy Calder and Stephen Gilmore}, title = {Modelization and Simulation of Nano Devices in {\textdollar}{\textbackslash}mathtt\{nano\}{\textbackslash}kappa{\textdollar} Calculus}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2007, Edinburgh, Scotland, September 20-21, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4695}, pages = {168--183}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-75140-3\_12}, doi = {10.1007/978-3-540-75140-3\_12}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/CrediGLPSZ07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/DemattePRS07, author = {Lorenzo Dematt{\'{e}} and Corrado Priami and Alessandro Romanel and Orkun S. Soyer}, editor = {Muffy Calder and Stephen Gilmore}, title = {A Formal and Integrated Framework to Simulate Evolution of Biological Pathways}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2007, Edinburgh, Scotland, September 20-21, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4695}, pages = {106--120}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-75140-3\_8}, doi = {10.1007/978-3-540-75140-3\_8}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/DemattePRS07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/FagesR07, author = {Fran{\c{c}}ois Fages and Aur{\'{e}}lien Rizk}, editor = {Muffy Calder and Stephen Gilmore}, title = {On the Analysis of Numerical Data Time Series in Temporal Logic}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2007, Edinburgh, Scotland, September 20-21, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4695}, pages = {48--63}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-75140-3\_4}, doi = {10.1007/978-3-540-75140-3\_4}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/FagesR07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/FelixRV07, author = {Liliana F{\'{e}}lix and Francesc Rossell{\'{o}} and Gabriel Valiente}, editor = {Muffy Calder and Stephen Gilmore}, title = {Reconstructing Metabolic Pathways by Bidirectional Chemical Search}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2007, Edinburgh, Scotland, September 20-21, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4695}, pages = {217--232}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-75140-3\_15}, doi = {10.1007/978-3-540-75140-3\_15}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/FelixRV07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/GilbertHL07, author = {David R. Gilbert and Monika Heiner and Sebastian Lehrack}, editor = {Muffy Calder and Stephen Gilmore}, title = {A Unifying Framework for Modelling and Analysing Biochemical Pathways Using Petri Nets}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2007, Edinburgh, Scotland, September 20-21, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4695}, pages = {200--216}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-75140-3\_14}, doi = {10.1007/978-3-540-75140-3\_14}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/GilbertHL07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/GuerrieroHP07, author = {Maria Luisa Guerriero and John K. Heath and Corrado Priami}, editor = {Muffy Calder and Stephen Gilmore}, title = {An Automated Translation from a Narrative Language for Biological Modelling into Process Algebra}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2007, Edinburgh, Scotland, September 20-21, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4695}, pages = {136--151}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-75140-3\_10}, doi = {10.1007/978-3-540-75140-3\_10}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/GuerrieroHP07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/KhaninH07, author = {Raya Khanin and Desmond J. Higham}, editor = {Muffy Calder and Stephen Gilmore}, title = {Chemical Master Equation and Langevin Regimes for a Gene Transcription Model}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2007, Edinburgh, Scotland, September 20-21, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4695}, pages = {1--14}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-75140-3\_1}, doi = {10.1007/978-3-540-75140-3\_1}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/KhaninH07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/NaldiTC07, author = {Aur{\'{e}}lien Naldi and Denis Thieffry and Claudine Chaouiya}, editor = {Muffy Calder and Stephen Gilmore}, title = {Decision Diagrams for the Representation and Analysis of Logical Models of Genetic Networks}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2007, Edinburgh, Scotland, September 20-21, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4695}, pages = {233--247}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-75140-3\_16}, doi = {10.1007/978-3-540-75140-3\_16}, timestamp = {Sun, 02 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/NaldiTC07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/PhillipsC07, author = {Andrew Phillips and Luca Cardelli}, editor = {Muffy Calder and Stephen Gilmore}, title = {Efficient, Correct Simulation of Biological Processes in the Stochastic Pi-calculus}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2007, Edinburgh, Scotland, September 20-21, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4695}, pages = {184--199}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-75140-3\_13}, doi = {10.1007/978-3-540-75140-3\_13}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/PhillipsC07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Sandmann07, author = {Werner Sandmann}, editor = {Muffy Calder and Stephen Gilmore}, title = {Simultaneous Stochastic Simulation of Multiple Perturbations in Biological Network Models}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2007, Edinburgh, Scotland, September 20-21, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4695}, pages = {15--31}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-75140-3\_2}, doi = {10.1007/978-3-540-75140-3\_2}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/Sandmann07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/SiebertB07, author = {Heike Siebert and Alexander Bockmayr}, editor = {Muffy Calder and Stephen Gilmore}, title = {Context Sensitivity in Logical Modeling with Time Delays}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2007, Edinburgh, Scotland, September 20-21, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4695}, pages = {64--79}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-75140-3\_5}, doi = {10.1007/978-3-540-75140-3\_5}, timestamp = {Fri, 02 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/SiebertB07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/VersariB07, author = {Cristian Versari and Nadia Busi}, editor = {Muffy Calder and Stephen Gilmore}, title = {Stochastic Simulation of Biological Systems with Dynamical Compartment Structure}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2007, Edinburgh, Scotland, September 20-21, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4695}, pages = {80--95}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-75140-3\_6}, doi = {10.1007/978-3-540-75140-3\_6}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/VersariB07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/WilczynskiT07, author = {Bartek Wilczynski and Jerzy Tiuryn}, editor = {Muffy Calder and Stephen Gilmore}, title = {Reconstruction of Mammalian Cell Cycle Regulatory Network from Microarray Data Using Stochastic Logical Networks}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2007, Edinburgh, Scotland, September 20-21, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4695}, pages = {121--135}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-75140-3\_9}, doi = {10.1007/978-3-540-75140-3\_9}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/WilczynskiT07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/cmsb/2007, editor = {Muffy Calder and Stephen Gilmore}, title = {Computational Methods in Systems Biology, International Conference, {CMSB} 2007, Edinburgh, Scotland, September 20-21, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4695}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-75140-3}, doi = {10.1007/978-3-540-75140-3}, isbn = {978-3-540-75139-7}, timestamp = {Tue, 14 May 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/2007.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BuschSW06, author = {Hauke Busch and Werner Sandmann and Verena Wolf}, editor = {Corrado Priami}, title = {A Numerical Aggregation Algorithm for the Enzyme-Catalyzed Substrate Conversion}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4210}, pages = {298--311}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11885191\_21}, doi = {10.1007/11885191\_21}, timestamp = {Sun, 02 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BuschSW06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Busi06, author = {Nadia Busi}, editor = {Corrado Priami}, title = {Deciding Behavioural Properties in Brane Calculi}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4210}, pages = {17--31}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11885191\_2}, doi = {10.1007/11885191\_2}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/Busi06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/CalderDGH06, author = {Muffy Calder and Adam Duguid and Stephen Gilmore and Jane Hillston}, editor = {Corrado Priami}, title = {Stronger Computational Modelling of Signalling Pathways Using Both Continuous and Discrete-State Methods}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4210}, pages = {63--77}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11885191\_5}, doi = {10.1007/11885191\_5}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/CalderDGH06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/CataldoBB06, author = {Enrico Cataldo and John H. Byrne and Douglas A. Baxter}, editor = {Corrado Priami}, title = {Computational Model of a Central Pattern Generator}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4210}, pages = {242--256}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11885191\_17}, doi = {10.1007/11885191\_17}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/CataldoBB06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/CavaliereS06, author = {Matteo Cavaliere and Sean Sedwards}, editor = {Corrado Priami}, title = {Modelling Cellular Processes Using Membrane Systems with Peripheral and Integral Proteins}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4210}, pages = {108--126}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11885191\_8}, doi = {10.1007/11885191\_8}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/CavaliereS06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/ChettaouiDLVV06, author = {Chafika Chettaoui and Franck Delaplace and Pierre Lescanne and Mun'delanji Vestergaard and Ren{\'{e}} Vestergaard}, editor = {Corrado Priami}, title = {Rewriting Game Theory as a Foundation for State-Based Models of Gene Regulation}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4210}, pages = {257--270}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11885191\_18}, doi = {10.1007/11885191\_18}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/ChettaouiDLVV06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/ChiarugiCDBM06, author = {Davide Chiarugi and M. Chinellato and Pierpaolo Degano and G. Lo Brutto and Roberto Marangoni}, editor = {Corrado Priami}, title = {Feedbacks and Oscillations in the Virtual Cell {VICE}}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4210}, pages = {93--107}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11885191\_7}, doi = {10.1007/11885191\_7}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/ChiarugiCDBM06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/FagesS06, author = {Fran{\c{c}}ois Fages and Sylvain Soliman}, editor = {Corrado Priami}, title = {Type Inference in Systems Biology}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4210}, pages = {48--62}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11885191\_4}, doi = {10.1007/11885191\_4}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/FagesS06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/FilipponeMRMB06, author = {Maurizio Filippone and Francesco Masulli and Stefano Rovetta and Sushmita Mitra and Haider Banka}, editor = {Corrado Priami}, title = {Possibilistic Approach to Biclustering: An Application to Oligonucleotide Microarray Data Analysis}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4210}, pages = {312--322}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11885191\_22}, doi = {10.1007/11885191\_22}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/FilipponeMRMB06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/GambaCCTCBS06, author = {Andrea Gamba and Antonio de Candia and Fausto Cavalli and Stefano Di Talia and Antonio Coniglio and Federico Bussolino and Guido Serini}, editor = {Corrado Priami}, title = {A Computational Model for Eukaryotic Directional Sensing}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4210}, pages = {184--195}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11885191\_13}, doi = {10.1007/11885191\_13}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/GambaCCTCBS06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Gossler06, author = {Gregor G{\"{o}}{\ss}ler}, editor = {Corrado Priami}, title = {Compositional Reachability Analysis of Genetic Networks}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4210}, pages = {212--226}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11885191\_15}, doi = {10.1007/11885191\_15}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/Gossler06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/GrantH06, author = {Mark R. Grant and C. Anthony Hunt}, editor = {Corrado Priami}, title = {An In Silico Analogue of In Vitro Systems Used to Study Epithelial Cell Morphogenesis}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4210}, pages = {285--297}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11885191\_20}, doi = {10.1007/11885191\_20}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/GrantH06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/HeathKNPT06, author = {John Heath and Marta Z. Kwiatkowska and Gethin Norman and David Parker and Oksana Tymchyshyn}, editor = {Corrado Priami}, title = {Probabilistic Model Checking of Complex Biological Pathways}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4210}, pages = {32--47}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11885191\_3}, doi = {10.1007/11885191\_3}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/HeathKNPT06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/KnijnenburgWR06, author = {Theo A. Knijnenburg and Lodewyk F. A. Wessels and Marcel J. T. Reinders}, editor = {Corrado Priami}, title = {Condition Transition Analysis Reveals {TF} Activity Related to Nutrient-Limitation-Specific Effects of Oxygen Presence in Yeast}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4210}, pages = {271--284}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11885191\_19}, doi = {10.1007/11885191\_19}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/KnijnenburgWR06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/LagomarsinoJB06, author = {Marco Cosentino Lagomarsino and P. Jona and Bruno Bassetti}, editor = {Corrado Priami}, title = {Randomization and Feedback Properties of Directed Graphs Inspired by Gene Networks}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4210}, pages = {227--241}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11885191\_16}, doi = {10.1007/11885191\_16}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/LagomarsinoJB06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/MiculanB06, author = {Marino Miculan and Giorgio Bacci}, editor = {Corrado Priami}, title = {Modal Logics for Brane Calculus}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4210}, pages = {1--16}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11885191\_1}, doi = {10.1007/11885191\_1}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/MiculanB06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Prandi06, author = {Davide Prandi}, editor = {Corrado Priami}, title = {A Formal Approach to Molecular Docking}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4210}, pages = {78--92}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11885191\_6}, doi = {10.1007/11885191\_6}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/Prandi06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/SanguinettiRL06, author = {Guido Sanguinetti and Magnus Rattray and Neil D. Lawrence}, editor = {Corrado Priami}, title = {Identifying Submodules of Cellular Regulatory Networks}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4210}, pages = {155--168}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11885191\_11}, doi = {10.1007/11885191\_11}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/SanguinettiRL06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/SguanciLB06, author = {Luca Sguanci and Pietro Li{\`{o}} and Franco Bagnoli}, editor = {Corrado Priami}, title = {Modeling Evolutionary Dynamics of {HIV} Infection}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4210}, pages = {196--211}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11885191\_14}, doi = {10.1007/11885191\_14}, timestamp = {Fri, 02 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/SguanciLB06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/SiebertB06, author = {Heike Siebert and Alexander Bockmayr}, editor = {Corrado Priami}, title = {Incorporating Time Delays into the Logical Analysis of Gene Regulatory Networks}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4210}, pages = {169--183}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11885191\_12}, doi = {10.1007/11885191\_12}, timestamp = {Fri, 02 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/SiebertB06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/StegglesBW06, author = {L. Jason Steggles and Richard Banks and Anil Wipat}, editor = {Corrado Priami}, title = {Modelling and Analysing Genetic Networks: From Boolean Networks to Petri Nets}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4210}, pages = {127--141}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11885191\_9}, doi = {10.1007/11885191\_9}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/StegglesBW06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/WilczynskiT06, author = {Bartek Wilczynski and Jerzy Tiuryn}, editor = {Corrado Priami}, title = {Regulatory Network Reconstruction Using Stochastic Logical Networks}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4210}, pages = {142--154}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11885191\_10}, doi = {10.1007/11885191\_10}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/WilczynskiT06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/cmsb/2006, editor = {Corrado Priami}, title = {Computational Methods in Systems Biology, International Conference, {CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4210}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11885191}, doi = {10.1007/11885191}, isbn = {3-540-46166-3}, timestamp = {Tue, 14 May 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/2006.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/cmsb/2004, editor = {Vincent Danos and Vincent Sch{\"{a}}chter}, title = {Computational Methods in Systems Biology, International Conference, {CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {3082}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/b107287}, doi = {10.1007/B107287}, isbn = {3-540-25375-0}, timestamp = {Tue, 14 May 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/2004.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BenteleE04, author = {Martin Bentele and Roland Eils}, editor = {Vincent Danos and Vincent Sch{\"{a}}chter}, title = {General Stochastic Hybrid Method for the Simulation of Chemical Reaction Processes in Cells}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {3082}, pages = {248--251}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-25974-9\_22}, doi = {10.1007/978-3-540-25974-9\_22}, timestamp = {Tue, 14 May 2019 10:00:49 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BenteleE04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BockmayrCEV04, author = {Alexander Bockmayr and Arnaud Courtois and Damien Eveillard and M. Vezain}, editor = {Vincent Danos and Vincent Sch{\"{a}}chter}, title = {Building and Analysing an Integrative Model of {HIV-1} {RNA} Alternative Splicing}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {3082}, pages = {43--57}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-25974-9\_5}, doi = {10.1007/978-3-540-25974-9\_5}, timestamp = {Fri, 02 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/BockmayrCEV04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Bosnacki04, author = {Dragan Bosnacki}, editor = {Vincent Danos and Vincent Sch{\"{a}}chter}, title = {Black Box Checking for Biochemical Networks}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {3082}, pages = {225--230}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-25974-9\_18}, doi = {10.1007/978-3-540-25974-9\_18}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/Bosnacki04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Cardelli04, author = {Luca Cardelli}, editor = {Vincent Danos and Vincent Sch{\"{a}}chter}, title = {Brane Calculi}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {3082}, pages = {257--278}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-25974-9\_24}, doi = {10.1007/978-3-540-25974-9\_24}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/Cardelli04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Chabrier-RivierFS04, author = {Nathalie Chabrier{-}Rivier and Fran{\c{c}}ois Fages and Sylvain Soliman}, editor = {Vincent Danos and Vincent Sch{\"{a}}chter}, title = {The Biochemical Abstract Machine {BIOCHAM}}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {3082}, pages = {172--191}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-25974-9\_14}, doi = {10.1007/978-3-540-25974-9\_14}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/Chabrier-RivierFS04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/ChaumeGCGL04, author = {Denys Chaume and V{\'{e}}ronique Giudicelli and Kora Combres and Chantal Ginestoux and Marie{-}Paule Lefranc}, editor = {Vincent Danos and Vincent Sch{\"{a}}chter}, title = {IMGT-Choreography: Processing of Complex Immunogenetics Knowledge}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {3082}, pages = {73--84}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-25974-9\_7}, doi = {10.1007/978-3-540-25974-9\_7}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/ChaumeGCGL04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/ChiarugiCDM04, author = {Davide Chiarugi and Michele Curti and Pierpaolo Degano and Roberto Marangoni}, editor = {Vincent Danos and Vincent Sch{\"{a}}chter}, title = {{VICE:} {A} VIrtual CEll}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {3082}, pages = {207--220}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-25974-9\_16}, doi = {10.1007/978-3-540-25974-9\_16}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/ChiarugiCDM04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/DanosP04, author = {Vincent Danos and Sylvain Pradalier}, editor = {Vincent Danos and Vincent Sch{\"{a}}chter}, title = {Projective Brane Calculus}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {3082}, pages = {134--148}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-25974-9\_11}, doi = {10.1007/978-3-540-25974-9\_11}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/DanosP04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/FanchonCTHG04, author = {Eric Fanchon and Fabien Corblin and Laurent Trilling and Bastien Hermant and Danielle Gulino}, editor = {Vincent Danos and Vincent Sch{\"{a}}chter}, title = {Modeling the Molecular Network Controlling Adhesion Between Human Endothelial Cells: Inference and Simulation Using Constraint Logic Programming}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {3082}, pages = {104--118}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-25974-9\_9}, doi = {10.1007/978-3-540-25974-9\_9}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/FanchonCTHG04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Finney04, author = {Andrew Finney}, editor = {Vincent Danos and Vincent Sch{\"{a}}chter}, title = {Developing {SBML} Beyond Level 2: Proposals for Development}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {3082}, pages = {242--247}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-25974-9\_21}, doi = {10.1007/978-3-540-25974-9\_21}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/Finney04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/FisherHHPSS04, author = {Jasmin Fisher and David Harel and E. Jane Albert Hubbard and Nir Piterman and Michael J. Stern and Naamah Swerdlin}, editor = {Vincent Danos and Vincent Sch{\"{a}}chter}, title = {Combining State-Based and Scenario-Based Approaches in Modeling Biological Systems}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {3082}, pages = {236--241}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-25974-9\_20}, doi = {10.1007/978-3-540-25974-9\_20}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/FisherHHPSS04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/HuntRRY04, author = {C. Anthony Hunt and Glen E. P. Ropella and Michael S. Roberts and Li Yan}, editor = {Vincent Danos and Vincent Sch{\"{a}}chter}, title = {Biomimetic in Silico Devices}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {3082}, pages = {34--42}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-25974-9\_4}, doi = {10.1007/978-3-540-25974-9\_4}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/HuntRRY04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/ImotoHKJM04, author = {Seiya Imoto and Tomoyuki Higuchi and SunYong Kim and Euna Jeong and Satoru Miyano}, editor = {Vincent Danos and Vincent Sch{\"{a}}chter}, title = {Residual Bootstrapping and Median Filtering for Robust Estimation of Gene Networks from Microarray Data}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {3082}, pages = {149--160}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-25974-9\_12}, doi = {10.1007/978-3-540-25974-9\_12}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/ImotoHKJM04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/LodhiM04, author = {Huma Lodhi and Stephen H. Muggleton}, editor = {Vincent Danos and Vincent Sch{\"{a}}chter}, title = {Modelling Metabolic Pathways Using Stochastic Logic Programs-Based Ensemble Methods}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {3082}, pages = {119--133}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-25974-9\_10}, doi = {10.1007/978-3-540-25974-9\_10}, timestamp = {Sat, 30 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/LodhiM04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/MardarePQV04, author = {Radu Mardare and Corrado Priami and Paola Quaglia and Oleksandr Vagin}, editor = {Vincent Danos and Vincent Sch{\"{a}}chter}, title = {Model Checking Biological Systems Described Using Ambient Calculus}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {3082}, pages = {85--103}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-25974-9\_8}, doi = {10.1007/978-3-540-25974-9\_8}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/MardarePQV04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/NemeM04, author = {Antonio Neme and Pedro Miramontes}, editor = {Vincent Danos and Vincent Sch{\"{a}}chter}, title = {Biological Domain Identification Based in Codon Usage by Means of Rule and Tree Induction}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {3082}, pages = {221--224}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-25974-9\_17}, doi = {10.1007/978-3-540-25974-9\_17}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/NemeM04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/OnsumA04, author = {Matthew D. Onsum and Adam P. Arkin}, editor = {Vincent Danos and Vincent Sch{\"{a}}chter}, title = {Autonomous Mobile Robot Control Based on White Blood Cell Chemotaxis}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {3082}, pages = {9--19}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-25974-9\_2}, doi = {10.1007/978-3-540-25974-9\_2}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/OnsumA04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/PazosGGTLV04, author = {Florencio Pazos and David Guijas and Manuel J. G{\'{o}}mez and Almudena Trigo and Victor de Lorenzo and Alfonso Valencia}, editor = {Vincent Danos and Vincent Sch{\"{a}}chter}, title = {The Biodegradation Network, a New Scenario for Computational Systems Biology Research}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {3082}, pages = {252--256}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-25974-9\_23}, doi = {10.1007/978-3-540-25974-9\_23}, timestamp = {Sat, 19 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/PazosGGTLV04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/PozziVM04, author = {Sergio Pozzi and Gianluca Della Vedova and Giancarlo Mauri}, editor = {Vincent Danos and Vincent Sch{\"{a}}chter}, title = {An Explicit Upper Bound for the Approximation Ratio of the Maximum Gene Regulatory Network Problem}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {3082}, pages = {1--8}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-25974-9\_1}, doi = {10.1007/978-3-540-25974-9\_1}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/PozziVM04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/PriamiQ04, author = {Corrado Priami and Paola Quaglia}, editor = {Vincent Danos and Vincent Sch{\"{a}}chter}, title = {Beta Binders for Biological Interactions}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {3082}, pages = {20--33}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-25974-9\_3}, doi = {10.1007/978-3-540-25974-9\_3}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/PriamiQ04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/RichardCB04, author = {Adrien Richard and Jean{-}Paul Comet and Gilles Bernot}, editor = {Vincent Danos and Vincent Sch{\"{a}}chter}, title = {Graph-Based Modeling of Biological Regulatory Networks: Introduction of Singular States}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {3082}, pages = {58--72}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-25974-9\_6}, doi = {10.1007/978-3-540-25974-9\_6}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/RichardCB04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/SolimanF04, author = {Sylvain Soliman and Fran{\c{c}}ois Fages}, editor = {Vincent Danos and Vincent Sch{\"{a}}chter}, title = {CMBSlib: {A} Library for Comparing Formalisms and Models of Biological Systems}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {3082}, pages = {231--235}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-25974-9\_19}, doi = {10.1007/978-3-540-25974-9\_19}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/SolimanF04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/UhrmacherDLK04, author = {Adelinde M. Uhrmacher and Daniela Degenring and Jens Lemcke and Mario Krahmer}, editor = {Vincent Danos and Vincent Sch{\"{a}}chter}, title = {Towards Reusing Model Components in Systems Biology}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {3082}, pages = {192--206}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-25974-9\_15}, doi = {10.1007/978-3-540-25974-9\_15}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/UhrmacherDLK04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/VolzEABHKE04, author = {Dietmar Volz and Martin Eigel and Chaitanya A. Athale and Peter Bastian and Harald Hermann and Constantin Kappel and Roland Eils}, editor = {Vincent Danos and Vincent Sch{\"{a}}chter}, title = {Spatial Modeling and Simulation of Diffusion in Nuclei of Living Cells}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {3082}, pages = {161--171}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-25974-9\_13}, doi = {10.1007/978-3-540-25974-9\_13}, timestamp = {Fri, 29 Mar 2019 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/VolzEABHKE04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/AntoniottiMPPS03, author = {Marco Antoniotti and Bhubaneswar Mishra and Carla Piazza and Alberto Policriti and Marta Simeoni}, editor = {Corrado Priami}, title = {Modeling Cellular Behavior with Hybrid Automata: Bisimulation and Collapsing}, booktitle = {Computational Methods in Systems Biology, First International Workshop, {CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2602}, pages = {57--74}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/3-540-36481-1\_6}, doi = {10.1007/3-540-36481-1\_6}, timestamp = {Tue, 14 May 2019 10:00:49 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/AntoniottiMPPS03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BadeaT03, author = {Liviu Badea and Doina Tilivea}, editor = {Corrado Priami}, title = {Integrating Biological Process Modelling with Gene Expression Data and Ontologies for Functional Genomics}, booktitle = {Computational Methods in Systems Biology, First International Workshop, {CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2602}, pages = {187--193}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/3-540-36481-1\_27}, doi = {10.1007/3-540-36481-1\_27}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BadeaT03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Casey03, author = {Will Casey}, editor = {Corrado Priami}, title = {Coupled Oscillator Models for a Set of Communicating Cells}, booktitle = {Computational Methods in Systems Biology, First International Workshop, {CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2602}, pages = {163}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/3-540-36481-1\_14}, doi = {10.1007/3-540-36481-1\_14}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/Casey03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/ChabrierF03, author = {Nathalie Chabrier and Fran{\c{c}}ois Fages}, editor = {Corrado Priami}, title = {Symbolic Model Checking of Biochemical Networks}, booktitle = {Computational Methods in Systems Biology, First International Workshop, {CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2602}, pages = {149--162}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/3-540-36481-1\_13}, doi = {10.1007/3-540-36481-1\_13}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/ChabrierF03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/ChiaveriniD03, author = {Marc Chiaverini and Vincent Danos}, editor = {Corrado Priami}, title = {A Core Modeling Language for the Working Molecular Biologist (Abstract)}, booktitle = {Computational Methods in Systems Biology, First International Workshop, {CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2602}, pages = {166}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/3-540-36481-1\_16}, doi = {10.1007/3-540-36481-1\_16}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/ChiaveriniD03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/ChoCW03, author = {Kwang{-}Hyun Cho and Jong{-}Ho Cha and Olaf Wolkenhauer}, editor = {Corrado Priami}, title = {How to Synthesize an Optimized Genetic-Switching System? {A} System-Theoretic Approach Based on {SQP}}, booktitle = {Computational Methods in Systems Biology, First International Workshop, {CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2602}, pages = {170}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/3-540-36481-1\_19}, doi = {10.1007/3-540-36481-1\_19}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/ChoCW03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/ChoSKWMK03, author = {Kwang{-}Hyun Cho and Sung{-}Young Shin and Hyun Woo Kim and Olaf Wolkenhauer and Brian McFerran and Walter Kolch}, editor = {Corrado Priami}, title = {Mathematical Modeling of the Influence of {RKIP} on the {ERK} Signaling Pathway}, booktitle = {Computational Methods in Systems Biology, First International Workshop, {CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2602}, pages = {127--141}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/3-540-36481-1\_11}, doi = {10.1007/3-540-36481-1\_11}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/ChoSKWMK03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/ChoSLW03, author = {Kwang{-}Hyun Cho and Sung{-}Young Shin and Hyeon{-}Woo Lee and Olaf Wolkenhauer}, editor = {Corrado Priami}, title = {Simulation Study of the {TNF} alpha Mediated NF-kappa {B} Signaling Pathway}, booktitle = {Computational Methods in Systems Biology, First International Workshop, {CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2602}, pages = {171}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/3-540-36481-1\_20}, doi = {10.1007/3-540-36481-1\_20}, timestamp = {Fri, 02 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/ChoSLW03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/CiobanuH03, author = {Gabriel Ciobanu and Dorin Huzum}, editor = {Corrado Priami}, title = {Discrete Event Systems and Client-Server Model for Signaling Mechanisms}, booktitle = {Computational Methods in Systems Biology, First International Workshop, {CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2602}, pages = {175--177}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/3-540-36481-1\_24}, doi = {10.1007/3-540-36481-1\_24}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/CiobanuH03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Corpas03, author = {Manuel Corpas}, editor = {Corrado Priami}, title = {Integrating Simulation Packages via Systems Biology Mark-Up Language}, booktitle = {Computational Methods in Systems Biology, First International Workshop, {CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2602}, pages = {167}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/3-540-36481-1\_17}, doi = {10.1007/3-540-36481-1\_17}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/Corpas03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/CurtiDB03, author = {Michele Curti and Pierpaolo Degano and Cosima Tatiana Baldari}, editor = {Corrado Priami}, title = {Causal pi-Calculus for Biochemical Modelling}, booktitle = {Computational Methods in Systems Biology, First International Workshop, {CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2602}, pages = {21--33}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/3-540-36481-1\_3}, doi = {10.1007/3-540-36481-1\_3}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/CurtiDB03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/DanosL03, author = {Vincent Danos and Cosimo Laneve}, editor = {Corrado Priami}, title = {Graphs for Core Molecular Biology}, booktitle = {Computational Methods in Systems Biology, First International Workshop, {CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2602}, pages = {34--46}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/3-540-36481-1\_4}, doi = {10.1007/3-540-36481-1\_4}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/DanosL03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/DeganoP03, author = {Pierpaolo Degano and Corrado Priami}, editor = {Corrado Priami}, title = {Enhanced Operational Semantics in Systems Biology}, booktitle = {Computational Methods in Systems Biology, First International Workshop, {CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2602}, pages = {178--181}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/3-540-36481-1\_25}, doi = {10.1007/3-540-36481-1\_25}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/DeganoP03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/DegenringRU03, author = {Daniela Degenring and Mathias R{\"{o}}hl and Adelinde M. Uhrmacher}, editor = {Corrado Priami}, title = {Discrete Event Simulation for a Better Understanding of Metabolite Channeling - {A} System Theoretic Approach}, booktitle = {Computational Methods in Systems Biology, First International Workshop, {CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2602}, pages = {114--126}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/3-540-36481-1\_10}, doi = {10.1007/3-540-36481-1\_10}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/DegenringRU03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/DevilleGHW03, author = {Yves Deville and David R. Gilbert and Jacques van Helden and Shoshana J. Wodak}, editor = {Corrado Priami}, title = {An Overview of Data Models for the Analysis of Biochemical Pathways}, booktitle = {Computational Methods in Systems Biology, First International Workshop, {CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2602}, pages = {174}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/3-540-36481-1\_23}, doi = {10.1007/3-540-36481-1\_23}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/DevilleGHW03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/DillL03, author = {David L. Dill and Patrick Lincoln}, editor = {Corrado Priami}, title = {Evolution as Design Engineer}, booktitle = {Computational Methods in Systems Biology, First International Workshop, {CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2602}, pages = {202--206}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/3-540-36481-1\_30}, doi = {10.1007/3-540-36481-1\_30}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/DillL03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/EkerLLST03, author = {Steven Eker and Keith Laderoute and Patrick Lincoln and M. G. Sriram and Carolyn L. Talcott}, editor = {Corrado Priami}, title = {Representing and Simulating Protein Functional Domains in Signal Transduction Using Maude}, booktitle = {Computational Methods in Systems Biology, First International Workshop, {CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2602}, pages = {164--165}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/3-540-36481-1\_15}, doi = {10.1007/3-540-36481-1\_15}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/EkerLLST03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/EveillardRJBB03, author = {Damien Eveillard and Delphine Ropers and Hidde de Jong and Christiane Branlant and Alexander Bockmayr}, editor = {Corrado Priami}, title = {Multiscale Modeling of Alternative Splicing Regulation}, booktitle = {Computational Methods in Systems Biology, First International Workshop, {CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2602}, pages = {75--87}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/3-540-36481-1\_7}, doi = {10.1007/3-540-36481-1\_7}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/EveillardRJBB03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/HeinerKW03, author = {Monika Heiner and Ina Koch and J{\"{u}}rgen Will}, editor = {Corrado Priami}, title = {Model Validation of Biological Pathways Using Petri Nets - Demonstrated for Apoptosis}, booktitle = {Computational Methods in Systems Biology, First International Workshop, {CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2602}, pages = {173}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/3-540-36481-1\_22}, doi = {10.1007/3-540-36481-1\_22}, timestamp = {Sun, 02 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/HeinerKW03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/KamHKMPHS03, author = {Na'aman Kam and David Harel and Hillel Kugler and Rami Marelly and Amir Pnueli and E. Jane Albert Hubbard and Michael J. Stern}, editor = {Corrado Priami}, title = {Formal Modeling of C. elegans Development: {A} Scenario-Based Approach}, booktitle = {Computational Methods in Systems Biology, First International Workshop, {CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2602}, pages = {4--20}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/3-540-36481-1\_2}, doi = {10.1007/3-540-36481-1\_2}, timestamp = {Sat, 19 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/KamHKMPHS03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/KimIM03, author = {SunYong Kim and Seiya Imoto and Satoru Miyano}, editor = {Corrado Priami}, title = {Dynamic Bayesian Network and Nonparametric Regression for Nonlinear Modeling of Gene Networks from Time Series Gene Expression Data}, booktitle = {Computational Methods in Systems Biology, First International Workshop, {CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2602}, pages = {104--113}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/3-540-36481-1\_9}, doi = {10.1007/3-540-36481-1\_9}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/KimIM03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Lancet03, author = {Doron Lancet}, editor = {Corrado Priami}, title = {Computer Simulation of Protocells}, booktitle = {Computational Methods in Systems Biology, First International Workshop, {CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2602}, pages = {194--197}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/3-540-36481-1\_28}, doi = {10.1007/3-540-36481-1\_28}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/Lancet03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Langmack03, author = {Olaf Langmack}, editor = {Corrado Priami}, title = {How to Solve Semantic Puzzles of Systems Biology}, booktitle = {Computational Methods in Systems Biology, First International Workshop, {CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2602}, pages = {198--201}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/3-540-36481-1\_29}, doi = {10.1007/3-540-36481-1\_29}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/Langmack03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/LemkeHBM03, author = {Ney Lemke and Fabiana Her{\'{e}}dia and Cl{\'{a}}udia K. Barcellos and Jos{\'{e}} C. M. Mombach}, editor = {Corrado Priami}, title = {A Method to Identify Essential Enzymes in the Metabolism: Application to Escherichia Coli}, booktitle = {Computational Methods in Systems Biology, First International Workshop, {CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2602}, pages = {142--148}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/3-540-36481-1\_12}, doi = {10.1007/3-540-36481-1\_12}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/LemkeHBM03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Miyano03, author = {Satoru Miyano}, editor = {Corrado Priami}, title = {Inference, Modeling and Simulation of Gene Networks}, booktitle = {Computational Methods in Systems Biology, First International Workshop, {CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2602}, pages = {207--211}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/3-540-36481-1\_31}, doi = {10.1007/3-540-36481-1\_31}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/Miyano03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/NagasakiDMM03, author = {Masao Nagasaki and Atsushi Doi and Hiroshi Matsuno and Satoru Miyano}, editor = {Corrado Priami}, title = {Recreating Biopathway Databases towards Simulation}, booktitle = {Computational Methods in Systems Biology, First International Workshop, {CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2602}, pages = {168--169}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/3-540-36481-1\_18}, doi = {10.1007/3-540-36481-1\_18}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/NagasakiDMM03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/PagnoniV03, author = {Anastasia Pagnoni and Andrea Visconti}, editor = {Corrado Priami}, title = {Detection and Analysis of Unexpected State Components in Biological Systems}, booktitle = {Computational Methods in Systems Biology, First International Workshop, {CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2602}, pages = {172}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/3-540-36481-1\_21}, doi = {10.1007/3-540-36481-1\_21}, timestamp = {Sat, 16 Sep 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/PagnoniV03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/PeresC03, author = {Sabine P{\'{e}}r{\`{e}}s and Jean{-}Paul Comet}, editor = {Corrado Priami}, title = {Contribution of Computational Tree Logic to Biological Regulatory Networks: Example from Pseudomonas Aeruginosa}, booktitle = {Computational Methods in Systems Biology, First International Workshop, {CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2602}, pages = {47--56}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/3-540-36481-1\_5}, doi = {10.1007/3-540-36481-1\_5}, timestamp = {Tue, 14 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cmsb/PeresC03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/RegevS03, author = {Amitai Regev and Ehud Shapiro}, editor = {Corrado Priami}, title = {Cells as Computation}, booktitle = {Computational Methods in Systems Biology, First International Workshop, {CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2602}, pages = {1--3}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/3-540-36481-1\_1}, doi = {10.1007/3-540-36481-1\_1}, timestamp = {Thu, 04 Oct 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/RegevS03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/RousuRMPSU03, author = {Juho Rousu and Ari Rantanen and Hannu Maaheimo and Esa Pitk{\"{a}}nen and Katja Saarela and Esko Ukkonen}, editor = {Corrado Priami}, title = {A Method for Estimating Metabolic Fluxes from Incomplete Isotopomer Information}, booktitle = {Computational Methods in Systems Biology, First International Workshop, {CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2602}, pages = {88--103}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/3-540-36481-1\_8}, doi = {10.1007/3-540-36481-1\_8}, timestamp = {Sat, 19 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/RousuRMPSU03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Roux-RouquieHIA03, author = {Magali Roux{-}Rouqui{\'{e}} and Leroy E. Hood and Sandrine Imbeaud and Charles Auffray}, editor = {Corrado Priami}, title = {Issues in Computational Methods for Functional Genomics and Systems Biology}, booktitle = {Computational Methods in Systems Biology, First International Workshop, {CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2602}, pages = {182--186}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/3-540-36481-1\_26}, doi = {10.1007/3-540-36481-1\_26}, timestamp = {Sun, 02 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/Roux-RouquieHIA03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/cmsb/2003, editor = {Corrado Priami}, title = {Computational Methods in Systems Biology, First International Workshop, {CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2602}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/3-540-36481-1}, doi = {10.1007/3-540-36481-1}, isbn = {3-540-00605-2}, timestamp = {Tue, 14 May 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/2003.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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