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@article{DBLP:journals/tcbb/0001GHS23,
author = {David Schaller and
Manuela Gei{\ss} and
Marc Hellmuth and
Peter F. Stadler},
title = {Best Match Graphs With Binary Trees},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1679--1690},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3143870},
doi = {10.1109/TCBB.2022.3143870},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/0001GHS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/0011LS23,
author = {Hui Yu and
KangKang Li and
Jianyu Shi},
title = {{DGANDDI:} Double Generative Adversarial Networks for Drug-Drug Interaction
Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1854--1863},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3219883},
doi = {10.1109/TCBB.2022.3219883},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/0011LS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/0166SYW0ZZ23,
author = {Wei Wang and
Bin Sun and
MengXue Yu and
ShiYu Wu and
Dong Liu and
Hongjun Zhang and
Yun Zhou},
title = {GraphPLBR: Protein-Ligand Binding Residue Prediction With Deep Graph
Convolution Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2223--2232},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3239983},
doi = {10.1109/TCBB.2023.3239983},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/0166SYW0ZZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AbolmasoumiMM23,
author = {Amir Hossein Abolmasoumi and
Mohammad Mohammadian and
Lamine Mili},
title = {Robust {KALMAN} Filter State Estimation for Gene Regulatory Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1395--1405},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3173969},
doi = {10.1109/TCBB.2022.3173969},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AbolmasoumiMM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AdhikariHN23,
author = {Mainak Adhikari and
Abhishek Hazra and
Sudarshan Nandy},
title = {Deep Transfer Learning for Communicable Disease Detection and Recommendation
in Edge Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2468--2479},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3180393},
doi = {10.1109/TCBB.2022.3180393},
timestamp = {Fri, 18 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AdhikariHN23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AhmedCJP23,
author = {Imran Ahmed and
Abdellah Chehri and
Gwanggil Jeon and
Francesco Piccialli},
title = {Automated Pulmonary Nodule Classification and Detection Using Deep
Learning Architectures},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2445--2456},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3192139},
doi = {10.1109/TCBB.2022.3192139},
timestamp = {Fri, 18 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AhmedCJP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AiYDTG23,
author = {Chengwei Ai and
Hongpeng Yang and
Yijie Ding and
Jijun Tang and
Fei Guo},
title = {Low Rank Matrix Factorization Algorithm Based on Multi-Graph Regularization
for Detecting Drug-Disease Association},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3033--3043},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3274587},
doi = {10.1109/TCBB.2023.3274587},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AiYDTG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AlSabriGCOL23,
author = {Raeed Al{-}Sabri and
Jianliang Gao and
Jiamin Chen and
Moctard Babatounde Oloulade and
Tengfei Lyu},
title = {Multi-View Graph Neural Architecture Search for Biomedical Entity
and Relation Extraction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1221--1233},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3205113},
doi = {10.1109/TCBB.2022.3205113},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AlSabriGCOL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AlatranyKHMA23,
author = {Abbas Saad Alatrany and
Wasiq Khan and
Abir Jaafar Hussain and
Jamila Mustafina and
Dhiya Al{-}Jumeily},
title = {Transfer Learning for Classification of Alzheimer's Disease Based
on Genome Wide Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2700--2711},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3233869},
doi = {10.1109/TCBB.2022.3233869},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AlatranyKHMA23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AlexandrinoBODD23,
author = {Alexsandro Oliveira Alexandrino and
Klairton Lima Brito and
Andre Rodrigues Oliveira and
Ulisses Dias and
Zanoni Dias},
title = {Reversal and Indel Distance With Intergenic Region Information},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1628--1640},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3215615},
doi = {10.1109/TCBB.2022.3215615},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AlexandrinoBODD23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AliSKZKP23,
author = {Sarwan Ali and
Bikram Sahoo and
Muhammad Asad Khan and
Alexander Zelikovsky and
Imdadullah Khan and
Murray Patterson},
title = {Efficient Approximate Kernel Based Spike Sequence Classification},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3376--3388},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3206284},
doi = {10.1109/TCBB.2022.3206284},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/AliSKZKP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AllmanBR23,
author = {Elizabeth S. Allman and
Hector Ba{\~{n}}os and
John A. Rhodes},
title = {Testing Multispecies Coalescent Simulators Using Summary Statistics},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1613--1618},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3177956},
doi = {10.1109/TCBB.2022.3177956},
timestamp = {Mon, 01 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AllmanBR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Altuntas23,
author = {Volkan Altuntas},
title = {Diffusion Alignment Coefficient {(DAC):} {A} Novel Similarity Metric
for Protein-Protein Interaction Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {894--903},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3185406},
doi = {10.1109/TCBB.2022.3185406},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Altuntas23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AnjumNRBR23,
author = {Naser Anjum and
Raian Latif Nabil and
Rakibul Islam Rafi and
Md. Shamsuzzoha Bayzid and
Mohammad Saifur Rahman},
title = {{CD-MAWS:} An Alignment-Free Phylogeny Estimation Method Using Cosine
Distance on Minimal Absent Word Sets},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {196--205},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3136792},
doi = {10.1109/TCBB.2021.3136792},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AnjumNRBR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ArsalanKNNR23,
author = {Muhammad Arsalan and
Tariq Mahmood Khan and
Syed Saud Naqvi and
Mehmood Nawaz and
Imran Razzak},
title = {Prompt Deep Light-Weight Vessel Segmentation Network (PLVS-Net)},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1363--1371},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3211936},
doi = {10.1109/TCBB.2022.3211936},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ArsalanKNNR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AryaMSS23,
author = {Nikhilanand Arya and
Archana Mathur and
Snehanshu Saha and
Sriparna Saha},
title = {Proposal of {SVM} Utility Kernel for Breast Cancer Survival Estimation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1372--1383},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3198879},
doi = {10.1109/TCBB.2022.3198879},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AryaMSS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BaiYWZWJR023,
author = {Jun Bai and
Chuantao Yin and
Zimeng Wu and
Jianfei Zhang and
Yanmeng Wang and
Guanyi Jia and
Wenge Rong and
Zhang Xiong},
title = {Improving Biomedical ReQA With Consistent NLI-Transfer and Post-Whitening},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1864--1875},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3219375},
doi = {10.1109/TCBB.2022.3219375},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BaiYWZWJR023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BaiYZWDRX23,
author = {Jun Bai and
Chuantao Yin and
Jianfei Zhang and
Yanmeng Wang and
Yi Dong and
Wenge Rong and
Zhang Xiong},
title = {Adversarial Knowledge Distillation Based Biomedical Factoid Question
Answering},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {106--118},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3161032},
doi = {10.1109/TCBB.2022.3161032},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BaiYZWDRX23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BaileySSDK23,
author = {Richard Bailey and
Aisharjya Sarkar and
Aaditya Singh and
Alin Dobra and
Tamer Kahveci},
title = {Optimal Supervised Reduction of High Dimensional Transcription Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3093--3105},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3280557},
doi = {10.1109/TCBB.2023.3280557},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BaileySSDK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BerberEK23,
author = {Ibrahim Berber and
Cesim Erten and
Hilal Kazan},
title = {Predator: Predicting the Impact of Cancer Somatic Mutations on Protein-Protein
Interactions},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3163--3172},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3262119},
doi = {10.1109/TCBB.2023.3262119},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BerberEK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Bhattacharyya23,
author = {Ramkishore Bhattacharyya},
title = {Bidirectional Association Discovery Leads to Precise Identification
of Lung Cancer Biomarkers and Genome Taxa Class},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1783--1794},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3215630},
doi = {10.1109/TCBB.2022.3215630},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Bhattacharyya23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BianCCYCW23,
author = {Yuexin Bian and
Jintai Chen and
Xiaojun Chen and
Xiaoxian Yang and
Danny Z. Chen and
Jian Wu},
title = {Identifying Electrocardiogram Abnormalities Using a Handcrafted-Rule-Enhanced
Neural Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2434--2444},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3140785},
doi = {10.1109/TCBB.2022.3140785},
timestamp = {Fri, 18 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BianCCYCW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BohnsackKAV23,
author = {Katrin Sophie Bohnsack and
Marika Kaden and
Julia Abel and
Thomas Villmann},
title = {Alignment-Free Sequence Comparison: {A} Systematic Survey From a Machine
Learning Perspective},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {119--135},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3140873},
doi = {10.1109/TCBB.2022.3140873},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BohnsackKAV23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BonginiMPB23,
author = {Pietro Bongini and
Elisa Messori and
Niccol{\`{o}} Pancino and
Monica Bianchini},
title = {A Deep Learning Approach to the Prediction of Drug Side-Effects on
Molecular Graphs},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3681--3690},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3311015},
doi = {10.1109/TCBB.2023.3311015},
timestamp = {Fri, 26 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/BonginiMPB23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BonginiSBDPL23,
author = {Pietro Bongini and
Franco Scarselli and
Monica Bianchini and
Giovanna Maria Dimitri and
Niccol{\`{o}} Pancino and
Pietro Li{\'{o}}},
title = {Modular Multi-Source Prediction of Drug Side-Effects With DruGNN},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1211--1220},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3175362},
doi = {10.1109/TCBB.2022.3175362},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BonginiSBDPL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BritoAODD23,
author = {Klairton Lima Brito and
Alexsandro Oliveira Alexandrino and
Andre Rodrigues Oliveira and
Ulisses Dias and
Zanoni Dias},
title = {Genome Rearrangement Distance With a Flexible Intergenic Regions Aspect},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1641--1653},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3165443},
doi = {10.1109/TCBB.2022.3165443},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BritoAODD23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/CaiLSW23,
author = {Zhipeng Cai and
Min Li and
Pavel Skums and
Yanjie Wei},
title = {Guest Editors' Introduction to the Special Section on Bioinformatics
Research and Applications},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3329--3331},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3325032},
doi = {10.1109/TCBB.2023.3325032},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/CaiLSW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/CaiXYLGW23,
author = {Wentian Cai and
Linsen Xie and
Weixian Yang and
Yijiang Li and
Ying Gao and
Tingting Wang},
title = {DFTNet: Dual-Path Feature Transfer Network for Weakly Supervised Medical
Image Segmentation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2530--2540},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3198284},
doi = {10.1109/TCBB.2022.3198284},
timestamp = {Wed, 08 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/CaiXYLGW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/CaoPLMOA23,
author = {Yu Cao and
Wenya Pi and
Chun{-}Yu Lin and
Ulrike M{\"{u}}nzner and
Masahiro Ohtomo and
Tatsuya Akutsu},
title = {Common Attractors in Multiple Boolean Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2862--2873},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3268795},
doi = {10.1109/TCBB.2023.3268795},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/CaoPLMOA23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/CaoZWGZ23,
author = {Qingqing Cao and
Jianping Zhao and
Hai{-}Yun Wang and
Qi Guan and
Chun{-}Hou Zheng},
title = {An Integrated Method Based on Wasserstein Distance and Graph for Cancer
Subtype Discovery},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3499--3510},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3293472},
doi = {10.1109/TCBB.2023.3293472},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/CaoZWGZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/CaoZZJL23,
author = {Yahui Cao and
Tao Zhang and
Xin Zhao and
Xue Jia and
Bingzhi Li},
title = {MooSeeker: {A} Metabolic Pathway Design Tool Based on Multi-Objective
Optimization Algorithm},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3609--3622},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3307363},
doi = {10.1109/TCBB.2023.3307363},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/CaoZZJL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/CastiglioneNOPT23,
author = {Filippo Castiglione and
Christine Nardini and
Elia Onofri and
Marco Pedicini and
Paolo Tieri},
title = {Explainable Drug Repurposing Approach From Biased Random Walks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1009--1019},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3191392},
doi = {10.1109/TCBB.2022.3191392},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/CastiglioneNOPT23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChaiJSZZYL23,
author = {Zhaoying Chai and
Han Jin and
Shenghui Shi and
Siyan Zhan and
Lin Zhuo and
Yu Yang and
Qi Lian},
title = {Noise Reduction Learning Based on XLNet-CRF for Biomedical Named Entity
Recognition},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {595--605},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3157630},
doi = {10.1109/TCBB.2022.3157630},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChaiJSZZYL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Chen0C023,
author = {Shutao Chen and
Lin Zhang and
Xiangzhi Chen and
Hui Liu},
title = {{FGFICA:} Independent Component Analysis of Fusion Genomic Features
for Mining Epi-Transcriptome Profiling Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1842--1853},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3220552},
doi = {10.1109/TCBB.2022.3220552},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Chen0C023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Chen0L0Y23,
author = {Peng Chen and
Jian Wang and
Hongfei Lin and
Yijia Zhang and
Zhihao Yang},
title = {Knowledge Adaptive Multi-Way Matching Network for Biomedical Named
Entity Recognition via Machine Reading Comprehension},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2101--2111},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3233856},
doi = {10.1109/TCBB.2022.3233856},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Chen0L0Y23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenGLHYH23,
author = {Nan Chen and
Man Guo and
Yongchao Li and
Xiping Hu and
Zhijun Yao and
Bin Hu},
title = {Estimation of Discriminative Multimodal Brain Network Connectivity
Using Message-Passing-Based Nonlinear Network Fusion},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2398--2406},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3137498},
doi = {10.1109/TCBB.2021.3137498},
timestamp = {Fri, 18 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChenGLHYH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenGLMH23,
author = {Jiamin Chen and
Jianliang Gao and
Tengfei Lyu and
Oloulade Babatounde Moctard and
Xiaohua Hu},
title = {AutoMSR: Auto Molecular Structure Representation Learning for Multi-label
Metabolic Pathway Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3430--3439},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3198119},
doi = {10.1109/TCBB.2022.3198119},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/ChenGLMH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenHXAC23,
author = {Jiazhou Chen and
Guoqiang Han and
Aodan Xu and
Tatsuya Akutsu and
Hongmin Cai},
title = {Identifying miRNA-Gene Common and Specific Regulatory Modules for
Cancer Subtyping by a High-Order Graph Matching Model},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {421--431},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3161635},
doi = {10.1109/TCBB.2022.3161635},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChenHXAC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenLHMZGZX23,
author = {Zihao Chen and
Nan Liu and
Yang Huang and
Xiaoping Min and
Xiangxiang Zeng and
Shengxiang Ge and
Jun Zhang and
Ning{-}Shao Xia},
title = {PointDE: Protein Docking Evaluation Using 3D Point Cloud Neural Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3128--3138},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3279019},
doi = {10.1109/TCBB.2023.3279019},
timestamp = {Sat, 28 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChenLHMZGZX23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenLYR23,
author = {Hegang Chen and
Yuyin Lu and
Yuedong Yang and
Yanghui Rao},
title = {A Drug Combination Prediction Framework Based on Graph Convolutional
Network and Heterogeneous Information},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1917--1925},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3224734},
doi = {10.1109/TCBB.2022.3224734},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChenLYR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenLZBZ23,
author = {Shouzhi Chen and
Yanhong Liao and
Jianping Zhao and
Yannan Bin and
Chun{-}Hou Zheng},
title = {{PACVP:} Prediction of Anti-Coronavirus Peptides Using a Stacking
Learning Strategy With Effective Feature Representation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3106--3116},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3238370},
doi = {10.1109/TCBB.2023.3238370},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChenLZBZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenRTC23,
author = {Jiazhou Chen and
Wentao Rong and
Guihua Tao and
Hongmin Cai},
title = {Similarity Fusion via Exploiting High Order Proximity for Cancer Subtyping},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {658--667},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3139597},
doi = {10.1109/TCBB.2021.3139597},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChenRTC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenSWWM23,
author = {Qi{-}Qi Chen and
Zhao{-}Hui Sun and
Chuan{-}Feng Wei and
Edmond Qi Wu and
Dong Ming},
title = {Semi-Supervised 3D Medical Image Segmentation Based on Dual-Task Consistent
Joint Learning and Task-Level Regularization},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2457--2467},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3144428},
doi = {10.1109/TCBB.2022.3144428},
timestamp = {Fri, 18 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChenSWWM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenSZWG23,
author = {Peng Chen and
Huimin Shen and
Youzhi Zhang and
Bing Wang and
Pengying Gu},
title = {SGNet: Sequence-Based Convolution and Ligand Graph Network for Protein
Binding Affinity Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3257--3266},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3262821},
doi = {10.1109/TCBB.2023.3262821},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChenSZWG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenWFY23,
author = {Cheng{-}Bang Chen and
Yujie Wang and
Xuanya Fu and
Hui Yang},
title = {Recurrence Network Analysis of Histopathological Images for the Detection
of Invasive Ductal Carcinoma in Breast Cancer},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3234--3244},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3282798},
doi = {10.1109/TCBB.2023.3282798},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChenWFY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenWPXZWQL23,
author = {Taoning Chen and
Tingfang Wu and
Deng Pan and
Jinxing Xie and
Jin Zhi and
Xuejiao Wang and
Lijun Quan and
Qiang Lyu},
title = {TransRNAm: Identifying Twelve Types of {RNA} Modifications by an Interpretable
Multi-Label Deep Learning Model Based on Transformer},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3623--3634},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3307419},
doi = {10.1109/TCBB.2023.3307419},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/ChenWPXZWQL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenZCJLC23,
author = {Jiatao Chen and
Liang Zhang and
Ke Cheng and
Bo Jin and
Xinjiang Lu and
Chao Che},
title = {Predicting Drug-Target Interaction Via Self-Supervised Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2781--2789},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3153963},
doi = {10.1109/TCBB.2022.3153963},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChenZCJLC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenZZNC23,
author = {Cheng Chen and
Yuguo Zha and
Daming Zhu and
Kang Ning and
Xuefeng Cui},
title = {ContactLib-ATT: {A} Structure-Based Search Engine for Homologous Proteins},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3421--3429},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3197802},
doi = {10.1109/TCBB.2022.3197802},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/ChenZZNC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChengYJQ23,
author = {Xiaoqing Cheng and
Chang Yan and
Hao Jiang and
Yushan Qiu},
title = {scHOIS: Determining Cell Heterogeneity Through Hierarchical Clustering
Based on Optimal Imputation Strategy},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1431--1444},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3203592},
doi = {10.1109/TCBB.2022.3203592},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChengYJQ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChengZWSXS23,
author = {Enhao Cheng and
Jun Zhao and
Hong Wang and
Shuguang Song and
Shuxian Xiong and
Yanshen Sun},
title = {Dual Network Contrastive Learning for Predicting Microbe-Disease Associations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3469--3481},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3228617},
doi = {10.1109/TCBB.2022.3228617},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/ChengZWSXS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChuKLZZ23,
author = {He{-}Ming Chu and
Xiang{-}Zhen Kong and
Jin{-}Xing Liu and
Chun{-}Hou Zheng and
Han Zhang},
title = {A New Binary Biclustering Algorithm Based on Weight Adjacency Difference
Matrix for Analyzing Gene Expression Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2802--2809},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3283801},
doi = {10.1109/TCBB.2023.3283801},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChuKLZZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChuNHNN23,
author = {Thang Chu and
Thuy Trang Nguyen and
Bui Duong Hai and
Quang Huy Nguyen and
Tuan Nguyen},
title = {Graph Transformer for Drug Response Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1065--1072},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3206888},
doi = {10.1109/TCBB.2022.3206888},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChuNHNN23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChunikhinaLKYMM23,
author = {Evgenia Chunikhina and
Paul Logan and
Yevgeniy Kovchegov and
Anatoly Yambartsev and
Debashis Mondal and
Andrey Morgun},
title = {The {C-SHIFT} Algorithm for Normalizing Covariances},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {720--730},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3151840},
doi = {10.1109/TCBB.2022.3151840},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChunikhinaLKYMM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Dang0OML0X23,
author = {Qi Dang and
Yong Liang and
Dong Ouyang and
Rui Miao and
Caijin Ling and
Xiao{-}Ying Liu and
Shengli Xie},
title = {Improved Computational Drug-Repositioning by Self-Paced Non-Negative
Matrix Tri-Factorization},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1953--1962},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3225300},
doi = {10.1109/TCBB.2022.3225300},
timestamp = {Wed, 20 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Dang0OML0X23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DasSM23,
author = {Pradeep Kumar Das and
Biswajeet Sahoo and
Sukadev Meher},
title = {An Efficient Detection and Classification of Acute Leukemia Using
Transfer Learning and Orthogonal Softmax Layer-Based Model},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1817--1828},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3218590},
doi = {10.1109/TCBB.2022.3218590},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DasSM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DasTAPY23,
author = {Pranab Das and
Yogita Thakran and
S. R. Ngamwal Anal and
Vipin Pal and
Anju Yadav},
title = {{BRMCF:} Binary Relevance and {MLSMOTE} Based Computational Framework
to Predict Drug Functions From Chemical and Biological Properties
of Drugs},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1761--1773},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3215645},
doi = {10.1109/TCBB.2022.3215645},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DasTAPY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DhanukaST23,
author = {Richa Dhanuka and
Jyoti Prakash Singh and
Anushree Tripathi},
title = {A Comprehensive Survey of Deep Learning Techniques in Protein Function
Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2291--2301},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3247634},
doi = {10.1109/TCBB.2023.3247634},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DhanukaST23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DharejoZDZDKQ23,
author = {Fayaz Ali Dharejo and
Muhammad Zawish and
Farah Deeba and
Yuanchun Zhou and
Kapal Dev and
Sunder Ali Khowaja and
Nawab Muhammad Faseeh Qureshi},
title = {Multimodal-Boost: Multimodal Medical Image Super-Resolution Using
Multi-Attention Network With Wavelet Transform},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2420--2433},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3191387},
doi = {10.1109/TCBB.2022.3191387},
timestamp = {Fri, 18 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DharejoZDZDKQ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DingHTZG23,
author = {Yijie Ding and
Wenying He and
Jijun Tang and
Quan Zou and
Fei Guo},
title = {Laplacian Regularized Sparse Representation Based Classifier for Identifying
{DNA} N4-Methylcytosine Sites via {\textdollar}L{\_}\{2,1/2\}{\textdollar}L2,1/2-Matrix
Norm},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {500--511},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3133309},
doi = {10.1109/TCBB.2021.3133309},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DingHTZG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DingLLW23,
author = {Yulian Ding and
Xiujuan Lei and
Bo Liao and
Fang{-}Xiang Wu},
title = {Biomarker Identification via a Factorization Machine-Based Neural
Network With Binary Pairwise Encoding},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2136--2146},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3235299},
doi = {10.1109/TCBB.2023.3235299},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DingLLW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DingQZGCDS23,
author = {Yi Ding and
Xue Qin and
Mingfeng Zhang and
Ji Geng and
Dajiang Chen and
Fuhu Deng and
Chunhe Song},
title = {RLSegNet: An Medical Image Segmentation Network Based on Reinforcement
Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2565--2576},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3195705},
doi = {10.1109/TCBB.2022.3195705},
timestamp = {Fri, 18 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DingQZGCDS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DingYMC23,
author = {Xiaojian Ding and
Fan Yang and
Fumin Ma and
Shilin Chen},
title = {A Unified Multi-Class Feature Selection Framework for Microarray Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3725--3736},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3314432},
doi = {10.1109/TCBB.2023.3314432},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/DingYMC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DongCVLQ23,
author = {Xishuang Dong and
Shanta Chowdhury and
Uboho Victor and
Xiangfang Li and
Lijun Qian},
title = {Semi-Supervised Deep Learning for Cell Type Identification From Single-Cell
Transcriptomic Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1492--1505},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3173587},
doi = {10.1109/TCBB.2022.3173587},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DongCVLQ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DuH0WL23,
author = {Linlin Du and
Rui Han and
Bo Liu and
Yadong Wang and
Junyi Li},
title = {ScCCL: Single-Cell Data Clustering Based on Self-Supervised Contrastive
Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2233--2241},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3241129},
doi = {10.1109/TCBB.2023.3241129},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DuH0WL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DuH23,
author = {Xiuquan Du and
Jiajia Hu},
title = {Deep Multi-Label Joint Learning for {RNA} and DNA-Binding Proteins
Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {307--320},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3150280},
doi = {10.1109/TCBB.2022.3150280},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DuH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DuHUL23,
author = {Zhihua Du and
Tianyou Huang and
Vladimir N. Uversky and
Jianqiang Li},
title = {Predicting {TF} Proteins by Incorporating Evolution Information Through
{PSSM}},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1319--1326},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3199758},
doi = {10.1109/TCBB.2022.3199758},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DuHUL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DuYLZJ23,
author = {Yongping Du and
Jingya Yan and
Yuxuan Lu and
Yiliang Zhao and
Xingnan Jin},
title = {Improving Biomedical Question Answering by Data Augmentation and Model
Weighting},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1114--1124},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3171388},
doi = {10.1109/TCBB.2022.3171388},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DuYLZJ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/FanSP23,
author = {Yongxian Fan and
Guicong Sun and
Xiaoyong Pan},
title = {ELMo4m6A: {A} Contextual Language Embedding-Based Predictor for Detecting
{RNA} N6-Methyladenosine Sites},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {944--954},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3173323},
doi = {10.1109/TCBB.2022.3173323},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/FanSP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/FengQT23,
author = {Yuhao Feng and
Lei Qi and
Weidong Tian},
title = {PhenoBERT: {A} Combined Deep Learning Method for Automated Recognition
of Human Phenotype Ontology},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1269--1277},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3170301},
doi = {10.1109/TCBB.2022.3170301},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/FengQT23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Fernandez-Fraga23,
author = {Alejandro Fern{\'{a}}ndez{-}Fraga and
Jorge Gonz{\'{a}}lez{-}Dom{\'{\i}}nguez and
Juan Touri{\~{n}}o},
title = {ParRADMeth: Identification of Differentially Methylated Regions on
Multicore Clusters},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2041--2049},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3230473},
doi = {10.1109/TCBB.2022.3230473},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Fernandez-Fraga23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/FreireLPS23,
author = {Borja Freire and
Susana Ladra and
Jos{\'{e}} R. Param{\'{a}} and
Leena Salmela},
title = {ViQUF: De Novo Viral Quasispecies Reconstruction Using Unitig-Based
Flow Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1550--1562},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3190282},
doi = {10.1109/TCBB.2022.3190282},
timestamp = {Mon, 01 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/FreireLPS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/FuZNZ23,
author = {Haitao Fu and
Cecheng Zhao and
Xiaohui Niu and
Wen Zhang},
title = {{DRLM:} {A} Robust Drug Representation Learning Method and its Applications},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3451--3460},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3213979},
doi = {10.1109/TCBB.2022.3213979},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/FuZNZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/FurtneyBK23,
author = {Isaac Furtney and
Ray M. Bradley and
Mansur R. Kabuka},
title = {Patient Graph Deep Learning to Predict Breast Cancer Molecular Subtype},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3117--3127},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3290394},
doi = {10.1109/TCBB.2023.3290394},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/FurtneyBK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GaoTXZW23,
author = {Zhen Gao and
Jin Tang and
Junfeng Xia and
Chun{-}Hou Zheng and
Pi{-}Jing Wei},
title = {{CNNGRN:} {A} Convolutional Neural Network-Based Method for Gene Regulatory
Network Inference From Bulk Time-Series Expression Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2853--2861},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3282212},
doi = {10.1109/TCBB.2023.3282212},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GaoTXZW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GaoWHLM23,
author = {Xiaowei Gao and
Yan Wang and
Weimin Hou and
Zaiyi Liu and
Xiaoke Ma},
title = {Multi-View Clustering for Integration of Gene Expression and Methylation
Data With Tensor Decomposition and Self-Representation Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2050--2063},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3229678},
doi = {10.1109/TCBB.2022.3229678},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GaoWHLM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GaoZB23,
author = {Honghao Gao and
Zijian Zhang and
Ram{\'{o}}n J. Dur{\'{a}}n Barroso},
title = {Guest Editorial Special Issue on Multi-Modal Biomedical Computing-Deep
Transfer Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2363--2366},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3284603},
doi = {10.1109/TCBB.2023.3284603},
timestamp = {Thu, 31 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GaoZB23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GargS23,
author = {Shankey Garg and
Pradeep Singh},
title = {Transfer Learning Based Lightweight Ensemble Model for Imbalanced
Breast Cancer Classification},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1529--1539},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3174091},
doi = {10.1109/TCBB.2022.3174091},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GargS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GhasemiRK23,
author = {Mahdieh Ghasemi and
Maseud Rahgozar and
Kaveh Kavousi},
title = {Complex Disease Genes Identification Using a Heterogeneous Network
Embedding Approach},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {875--882},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3175598},
doi = {10.1109/TCBB.2022.3175598},
timestamp = {Sun, 30 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GhasemiRK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GongJSB23,
author = {Tiansu Gong and
Fusong Ju and
Shiwei Sun and
Dongbo Bu},
title = {SASA-Net: {A} Spatial-Aware Self-Attention Mechanism for Building
Protein 3D Structure Directly From Inter- Residue Distances},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3482--3488},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3240456},
doi = {10.1109/TCBB.2023.3240456},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/GongJSB23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GongLFLWLC23,
author = {Yinyin Gong and
Rui Li and
Bin Fu and
Yan Liu and
Jilong Wang and
Renfa Li and
Danny Z. Chen},
title = {A {CNN-LSTM} Ensemble Model for Predicting Protein-Protein Interaction
Binding Sites},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3588--3599},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3306948},
doi = {10.1109/TCBB.2023.3306948},
timestamp = {Mon, 29 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/GongLFLWLC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GonzalezCrespoGPFP23,
author = {Isabel Gonz{\'{a}}lez{-}Crespo and
Antonio G{\'{o}}mez{-}Caama{\~{n}}o and
{\'{O}}scar L{\'{o}}pez Pouso and
John D. Fenwick and
Juan Pardo{-}Montero},
title = {A Biomathematical Model of Tumor Response to Radioimmunotherapy With
{\(\alpha\)}PDL1 and {\(\alpha\)}CTLA4},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {808--821},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3174454},
doi = {10.1109/TCBB.2022.3174454},
timestamp = {Wed, 17 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GonzalezCrespoGPFP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GormezA23,
author = {Yasin G{\"{o}}rmez and
Zafer Aydin},
title = {IGPRED-MultiTask: {A} Deep Learning Model to Predict Protein Secondary
Structure, Torsion Angles and Solvent Accessibility},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1104--1113},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3191395},
doi = {10.1109/TCBB.2022.3191395},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GormezA23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GuanAXLW23,
author = {Yuxia Guan and
Ying An and
Jingrui Xu and
Ning Liu and
Jianxin Wang},
title = {HA-ResNet: Residual Neural Network With Hidden Attention for {ECG}
Arrhythmia Detection Using Two-Dimensional Signal},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3389--3398},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3198998},
doi = {10.1109/TCBB.2022.3198998},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/GuanAXLW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GuanQJJDW23,
author = {Shixuan Guan and
Yuqing Qian and
Tengsheng Jiang and
Min Jiang and
Yijie Ding and
Hongjie Wu},
title = {{MV-H-RKM:} {A} Multiple View-Based Hypergraph Regularized Restricted
Kernel Machine for Predicting DNA-Binding Proteins},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1246--1256},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3183191},
doi = {10.1109/TCBB.2022.3183191},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GuanQJJDW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GuanZ23,
author = {Xiaoyu Guan and
Daoqiang Zhang},
title = {{T-MGCL:} Molecule Graph Contrastive Learning Based on Transformer
for Molecular Property Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3851--3862},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3326145},
doi = {10.1109/TCBB.2023.3326145},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/GuanZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GuanZWD23,
author = {Shixuan Guan and
Quan Zou and
Hongjie Wu and
Yijie Ding},
title = {Protein-DNA Binding Residues Prediction Using a Deep Learning Model
With Hierarchical Feature Extraction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2619--2628},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3190933},
doi = {10.1109/TCBB.2022.3190933},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GuanZWD23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HaP23,
author = {Jihwan Ha and
Sanghyun Park},
title = {{NCMD:} Node2vec-Based Neural Collaborative Filtering for Predicting
MiRNA-Disease Association},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1257--1268},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3191972},
doi = {10.1109/TCBB.2022.3191972},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HaP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HasanMS23,
author = {Md. Al Mehedi Hasan and
Md. Maniruzzaman and
Jungpil Shin},
title = {Gene Expression and Metadata Based Identification of Key Genes for
Hepatocellular Carcinoma Using Machine Learning and Statistical Models},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3786--3799},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3322753},
doi = {10.1109/TCBB.2023.3322753},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/HasanMS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HayamizuM23,
author = {Momoko Hayamizu and
Kazuhisa Makino},
title = {Ranking Top-{\textdollar}k{\textdollar} Trees in Tree-Based Phylogenetic
Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2349--2355},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3229827},
doi = {10.1109/TCBB.2022.3229827},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HayamizuM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HeCT023,
author = {Yezi He and
Xiangtao Chen and
Nguyen Hoang Tu and
Jiawei Luo},
title = {Deep Multi-Constraint Soft Clustering Analysis for Single-Cell RNA-Seq
Data via Zero-Inflated Autoencoder Embedding},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2254--2265},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3240253},
doi = {10.1109/TCBB.2023.3240253},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HeCT023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HeZWCCGH23,
author = {Ying He and
Qinhu Zhang and
Siguo Wang and
Zhanheng Chen and
Zhen Cui and
Zhen{-}Hao Guo and
De{-}Shuang Huang},
title = {Predicting the Sequence Specificities of DNA-Binding Proteins by {DNA}
Fine-Tuned Language Model With Decaying Learning Rates},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {616--624},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3165592},
doi = {10.1109/TCBB.2022.3165592},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HeZWCCGH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HerreraRomeroASVG23,
author = {Bryan Herrera{-}Romero and
Diego Almeida{-}Gal{\'{a}}rraga and
Graciela M. Salum and
Fernando Villalba{-}Meneses and
Marco Esteban Gudi{\~{n}}o{-}Gomezjurado},
title = {GUSignal: An Informatics Tool to Analyze Glucuronidase Gene Expression
in Arabidopsis Thaliana Roots},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1073--1080},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3190427},
doi = {10.1109/TCBB.2022.3190427},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HerreraRomeroASVG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HuaSFWKY23,
author = {Yang Hua and
Xiaoning Song and
Zhen{-}Hua Feng and
Xiaojun Wu and
Josef Kittler and
Dong{-}Jun Yu},
title = {CPInformer for Efficient and Robust Compound-Protein Interaction Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {285--296},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3144008},
doi = {10.1109/TCBB.2022.3144008},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HuaSFWKY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HuangBZLZ23,
author = {Yiran Huang and
Yongjin Bin and
Pingfan Zeng and
Wei Lan and
Cheng Zhong},
title = {NetPro: Neighborhood Interaction-Based Drug Repositioning via Label
Propagation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2159--2169},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3234331},
doi = {10.1109/TCBB.2023.3234331},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HuangBZLZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HuangSZHL23,
author = {Xin Huang and
Benzhe Su and
Chenbo Zhu and
Xinyu He and
Xiaohui Lin},
title = {Dynamic Network Construction for Identifying Early Warning Signals
Based On a Data-Driven Approach: Early Diagnosis Biomarker Discovery
for Gastric Cancer},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {923--931},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3176319},
doi = {10.1109/TCBB.2022.3176319},
timestamp = {Sun, 21 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HuangSZHL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HuangTZHD23,
author = {Weixian Huang and
Kaiwen Tan and
Ziye Zhang and
Jinlong Hu and
Shoubin Dong},
title = {A Review of Fusion Methods for Omics and Imaging Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {74--93},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3143900},
doi = {10.1109/TCBB.2022.3143900},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HuangTZHD23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HuangWLZ23,
author = {Yiran Huang and
Zhihong Wu and
Wei Lan and
Cheng Zhong},
title = {Predicting Disease-Associated N7-Methylguanosine (m\({}^{\mbox{7}}\)G)
Sites via Random Walk on Heterogeneous Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3173--3181},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3284505},
doi = {10.1109/TCBB.2023.3284505},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HuangWLZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HuangWYWG23,
author = {Zimo Huang and
Jun Wang and
Zhongmin Yan and
Lin Wan and
Maozu Guo},
title = {Differential Gene Expression Prediction by Ensemble Deep Networks
on Histone Modification Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {340--351},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3139634},
doi = {10.1109/TCBB.2021.3139634},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HuangWYWG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HuangWZWZ23,
author = {Chenxi Huang and
Wei Wang and
Xin Zhang and
Shui{-}Hua Wang and
Yudong Zhang},
title = {Tuberculosis Diagnosis Using Deep Transferred EfficientNet},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2639--2646},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3199572},
doi = {10.1109/TCBB.2022.3199572},
timestamp = {Fri, 02 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/HuangWZWZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Inzamam-Ul-Hossain23,
author = {Md. Inzamam{-}Ul{-}Hossain and
Md. Rafiqul Islam},
title = {Identification of Essential Protein Using Chemical Reaction Optimization
and Machine Learning Technique},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2122--2135},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3233473},
doi = {10.1109/TCBB.2022.3233473},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Inzamam-Ul-Hossain23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/IravaniC23,
author = {Sahar Iravani and
Tim O. F. Conrad},
title = {An Interpretable Deep Learning Approach for Biomarker Detection in
{LC-MS} Proteomics Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {151--161},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3141656},
doi = {10.1109/TCBB.2022.3141656},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/IravaniC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/IslamKISK23,
author = {Tanzila Islam and
Chyon Hae Kim and
Hiroyoshi Iwata and
Hiroyuki Shimono and
Akio Kimura},
title = {DeepCGP: {A} Deep Learning Method to Compress Genome-Wide Polymorphisms
for Predicting Phenotype of Rice},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2078--2088},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3231466},
doi = {10.1109/TCBB.2022.3231466},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/IslamKISK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JainG23,
author = {Aditi Jain and
Arvind Kumar Gupta},
title = {Modeling mRNA Translation With Ribosome Abortions},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1600--1605},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3203171},
doi = {10.1109/TCBB.2022.3203171},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JainG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JamaliKW23,
author = {Ali Akbar Jamali and
Anthony J. Kusalik and
Fang{-}Xiang Wu},
title = {{NMTF-DTI:} {A} Nonnegative Matrix Tri-factorization Approach With
Multiple Kernel Fusion for Drug-Target Interaction Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {586--594},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3135978},
doi = {10.1109/TCBB.2021.3135978},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JamaliKW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JeeKC23,
author = {Dong Jun Jee and
Yixin Kong and
Hyonho Chun},
title = {Deep Nonnegative Matrix Factorization Using a Variational Autoencoder
With Application to Single-Cell {RNA} Sequencing Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {883--893},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3172723},
doi = {10.1109/TCBB.2022.3172723},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JeeKC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JeonBKK23,
author = {Hajin Jeon and
Jeongmin Bae and
Hyerin Kim and
Min{-}Soo Kim},
title = {VPrimer: {A} Method of Designing and Updating Primer and Probe With
High Variant Coverage for {RNA} Virus Detection},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {775--784},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3138145},
doi = {10.1109/TCBB.2021.3138145},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JeonBKK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JhaS23,
author = {Kanchan Jha and
Sriparna Saha},
title = {Analyzing Effect of Multi-Modality in Predicting Protein-Protein Interactions},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {162--173},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3157531},
doi = {10.1109/TCBB.2022.3157531},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JhaS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JhaSK23,
author = {Kanchan Jha and
Sriparna Saha and
Sourav Karmakar},
title = {Prediction of Protein-Protein Interactions Using Vision Transformer
and Language Model},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3215--3225},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3248797},
doi = {10.1109/TCBB.2023.3248797},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JhaSK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JiYWQZ23,
author = {Cunmei Ji and
Ning Yu and
Yu{-}Tian Wang and
Rong Qi and
Chun{-}Hou Zheng},
title = {An End-to-End Deep Hybrid Autoencoder Based Method for Single-Cell
RNA-Seq Data Analysis},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3889--3900},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3328029},
doi = {10.1109/TCBB.2023.3328029},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/JiYWQZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JiaMCY23,
author = {Baoli Jia and
Qingfang Meng and
Yuehui Chen and
Hongri Yang},
title = {Prediction of Membrane Protein Amphiphilic Helix Based on Horizontal
Visibility Graph and Graph Convolution Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3567--3574},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3305493},
doi = {10.1109/TCBB.2023.3305493},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/JiaMCY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JiangL023,
author = {Changkun Jiang and
Weipeng Lv and
Jianqiang Li},
title = {Protein-Protein Interaction Sites Prediction Using Batch Normalization
Based CNNs and Oversampling Method Borderline-SMOTE},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2190--2199},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3238001},
doi = {10.1109/TCBB.2023.3238001},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JiangL023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JiangLWF23,
author = {Hangjin Jiang and
Han Li and
Wing Hung Wong and
Xiaodan Fan},
title = {Revealing Free Energy Landscape From {MD} Data via Conditional Angle
Partition Tree},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1384--1394},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3172352},
doi = {10.1109/TCBB.2022.3172352},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JiangLWF23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JiangQLLZWL23,
author = {Yelu Jiang and
Lijun Quan and
Kailong Li and
Yan Li and
Yiting Zhou and
Tingfang Wu and
Qiang Lyu},
title = {DGCddG: Deep Graph Convolution for Predicting Protein-Protein Binding
Affinity Changes Upon Mutations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2089--2100},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3233627},
doi = {10.1109/TCBB.2022.3233627},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JiangQLLZWL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JiangSL23,
author = {Yatong Jiang and
Tao Shang and
Jianwei Liu},
title = {Secure Counting Query Protocol for Genomic Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1457--1468},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3178446},
doi = {10.1109/TCBB.2022.3178446},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JiangSL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JiangSZYL23,
author = {Likun Jiang and
Nan Sun and
Yue Zhang and
Xinyu Yu and
Xiangrong Liu},
title = {Bioactive Peptide Recognition Based on {NLP} Pre-Train Algorithm},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3809--3819},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3323295},
doi = {10.1109/TCBB.2023.3323295},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/JiangSZYL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JiangTJHL23,
author = {Changzhi Jiang and
Minli Tang and
Shuting Jin and
Wei Huang and
Xiangrong Liu},
title = {{KGNMDA:} {A} Knowledge Graph Neural Network Method for Predicting
Microbe-Disease Associations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1147--1155},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3184362},
doi = {10.1109/TCBB.2022.3184362},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JiangTJHL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JosephS23,
author = {Steffy Maria Joseph and
P. S. Sathidevi},
title = {An Automated cDNA Microarray Image Analysis for the Determination
of Gene Expression Ratios},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {136--150},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3135650},
doi = {10.1109/TCBB.2021.3135650},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JosephS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KangWPTCY23,
author = {Yan Kang and
Haining Wang and
Bin Pu and
Liu Tao and
Jianguo Chen and
Philip S. Yu},
title = {A Hybrid Two-Stage Teaching-Learning-Based Optimization Algorithm
for Feature Selection in Bioinformatics},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1746--1760},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3215129},
doi = {10.1109/TCBB.2022.3215129},
timestamp = {Thu, 07 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/KangWPTCY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KariBKY23,
author = {Hemanth Kari and
Surya Manikhanta Sowri Bandi and
Aditya Kumar and
Venkata Rajesh Yella},
title = {DeePromClass: Delineator for Eukaryotic Core Promoters Employing Deep
Neural Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {802--807},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3163418},
doi = {10.1109/TCBB.2022.3163418},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KariBKY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KaurCA23,
author = {Amandeep Kaur and
Ajay Pal Singh Chauhan and
Ashwani Kumar Aggarwal},
title = {Prediction of Enhancers in {DNA} Sequence Data using a Hybrid {CNN-DLSTM}
Model},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1327--1336},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3167090},
doi = {10.1109/TCBB.2022.3167090},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KaurCA23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KerkettaEWHE23,
author = {Romica Kerketta and
M. Frank Erasmus and
Bridget S. Wilson and
{\'{A}}d{\'{a}}m M. Hal{\'{a}}sz and
Jeremy S. Edwards},
title = {Spatial Stochastic Model of the Pre-B Cell Receptor},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {683--693},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3166149},
doi = {10.1109/TCBB.2022.3166149},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KerkettaEWHE23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KimothiBHD23,
author = {Dhananjay Kimothi and
Pravesh Biyani and
James M. Hogan and
Melissa J. Davis},
title = {Sequence Representations and Their Utility for Predicting Protein-Protein
Interactions},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {646--657},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3137325},
doi = {10.1109/TCBB.2021.3137325},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KimothiBHD23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KlosaSLW23,
author = {Jan Klosa and
Noah Simon and
Volkmar Liebscher and
D{\"{o}}rte Wittenburg},
title = {A Fitted Sparse-Group Lasso for Genome-Based Evaluations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {30--38},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3156805},
doi = {10.1109/TCBB.2022.3156805},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KlosaSLW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Koh23,
author = {Hyunwook Koh},
title = {Subgroup Identification Using Virtual Twins for Human Microbiome Studies},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3800--3808},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3324139},
doi = {10.1109/TCBB.2023.3324139},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/Koh23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KuangZLT23,
author = {Mengmeng Kuang and
Yong Zhang and
Tak Wah Lam and
Hing{-}Fung Ting},
title = {MLProbs: {A} Data-Centric Pipeline for Better Multiple Sequence Alignment},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {524--533},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3148382},
doi = {10.1109/TCBB.2022.3148382},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/KuangZLT23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KumarD0P23,
author = {Vikash Kumar and
Akshay Deepak and
Ashish Ranjan and
Aravind Prakash},
title = {Lite-SeqCNN: {A} Light-Weight Deep {CNN} Architecture for Protein
Function Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2242--2253},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3240169},
doi = {10.1109/TCBB.2023.3240169},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KumarD0P23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LahorkarBSRJ23,
author = {Ashwin Lahorkar and
Hrushikesh Bhosale and
Aamod Sane and
Vigneshwar Ramakrishnan and
Valadi K. Jayaraman},
title = {Identification of Phase Separating Proteins With Distributed Reduced
Alphabet Representations of Sequences},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {410--420},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3149310},
doi = {10.1109/TCBB.2022.3149310},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LahorkarBSRJ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LanCYAXYY23,
author = {Jingfen Lan and
Wenxiang Chen and
Ganggang Yin and
Haque A. K. Alvi and
Kun Xie and
Qiang Yu and
Xiguo Yuan},
title = {{LDSSNV:} {A} Linkage Disequilibrium-Based Method for the Detection
of Somatic Single-Nucleotide Variants},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3020--3032},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3291134},
doi = {10.1109/TCBB.2023.3291134},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LanCYAXYY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LandryTLS23,
author = {Kaari Landry and
Aivee Teodocio and
Manuel Lafond and
Olivier Tremblay Savard},
title = {Defining Phylogenetic Network Distances Using Cherry Operations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1654--1666},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3162991},
doi = {10.1109/TCBB.2022.3162991},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LandryTLS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LangaritaAIAM23,
author = {Rub{\'{e}}n Langarita and
Adri{\`{a}} Armejach and
Pablo Ib{\'{a}}{\~{n}}ez and
Jes{\'{u}}s Alastruey{-}Bened{\'{e}} and
Miquel Moret{\'{o}}},
title = {Porting and Optimizing {BWA-MEM2} Using the Fujitsu {A64FX} Processor},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3139--3153},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3264514},
doi = {10.1109/TCBB.2023.3264514},
timestamp = {Thu, 09 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/LangaritaAIAM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LeeKKSL23,
author = {Hunmin Lee and
Mingon Kang and
Donghyun Kim and
Daehee Seo and
Yingshu Li},
title = {Epidemic Vulnerability Index for Effective Vaccine Distribution Against
Pandemic},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3332--3342},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3198365},
doi = {10.1109/TCBB.2022.3198365},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/LeeKKSL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LeeLH23,
author = {Wook Lee and
Seokwoo Lee and
Kyungsook Han},
title = {Constructing a Cancer Patient-Specific Network Based on Second-Order
Partial Correlations of Gene Expression and {DNA} Methylation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {266--276},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3145796},
doi = {10.1109/TCBB.2022.3145796},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LeeLH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LeeLRPH23,
author = {Seokwoo Lee and
Wook Lee and
Shulei Ren and
Byungkyu Park and
Kyungsook Han},
title = {Constructing Integrative ceRNA Networks and Finding Prognostic Biomarkers
in Renal Cell Carcinoma},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2671--2680},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3214190},
doi = {10.1109/TCBB.2022.3214190},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LeeLRPH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiDZL23,
author = {Hong{-}Dong Li and
Chao Deng and
Xiao{-}Qi Zhang and
Cui{-}Xiang Lin},
title = {A Gene Set-Integrated Approach for Predicting Disease-Associated Genes},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3440--3450},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3214517},
doi = {10.1109/TCBB.2022.3214517},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/LiDZL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiJOYZ23,
author = {Bo Li and
Ke Jin and
Le Ou{-}Yang and
Hong Yan and
Xiao{-}Fei Zhang},
title = {scTSSR2: Imputing Dropout Events for Single-Cell {RNA} Sequencing
Using Fast Two-Side Self-Representation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1445--1456},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3170587},
doi = {10.1109/TCBB.2022.3170587},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiJOYZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiKCWLM23,
author = {Ye Li and
Fanhui Kong and
Hui Cui and
Fan Wang and
Chunquan Li and
Jiquan Ma},
title = {{SENIES:} {DNA} Shape Enhanced Two-Layer Deep Learning Predictor for
the Identification of Enhancers and Their Strength},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {637--645},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3142019},
doi = {10.1109/TCBB.2022.3142019},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiKCWLM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiLMNZ23,
author = {Yuguang Li and
Shuai Lu and
Qiang Ma and
Xiaofei Nan and
Shoutao Zhang},
title = {Protein-Protein Interaction Site Prediction Based on Attention Mechanism
and Convolutional Neural Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3820--3829},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3323493},
doi = {10.1109/TCBB.2023.3323493},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/LiLMNZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiLMZ23,
author = {Jianyuan Li and
Xiong Luo and
Huimin Ma and
Wenbing Zhao},
title = {A Hybrid Deep Transfer Learning Model With Kernel Metric for {COVID-19}
Pneumonia Classification Using Chest {CT} Images},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2506--2517},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3216661},
doi = {10.1109/TCBB.2022.3216661},
timestamp = {Mon, 20 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/LiLMZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiLXLCWZ23,
author = {Xiong Li and
Yangkai Lin and
Chengwang Xie and
Zejun Li and
Min Chen and
Peng Wang and
Juan Zhou},
title = {A Clustering Method Unifying Cell-Type Recognition and Subtype Identification
for Tumor Heterogeneity Analysis},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {822--832},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3203185},
doi = {10.1109/TCBB.2022.3203185},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiLXLCWZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiQJLZWL23,
author = {Kailong Li and
Lijun Quan and
Yelu Jiang and
Yan Li and
Yiting Zhou and
Tingfang Wu and
Qiang Lyu},
title = {ctP\({}^{\mbox{2}}\)ISP: Protein-Protein Interaction Sites Prediction
Using Convolution and Transformer With Data Augmentation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {297--306},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3154413},
doi = {10.1109/TCBB.2022.3154413},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiQJLZWL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiSLL23,
author = {Jiefu Li and
Aman Sawhney and
Jung{-}Youn Lee and
Li Liao},
title = {Improving Inter-Helix Contact Prediction With Local 2D Topological
Information},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3001--3012},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3274361},
doi = {10.1109/TCBB.2023.3274361},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiSLL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiSWYFALYY23,
author = {Qiang Li and
Hong Song and
Zenghui Wei and
Fengbo Yang and
Jingfan Fan and
Danni Ai and
Yucong Lin and
Xiaoling Yu and
Jian Yang},
title = {Densely Connected U-Net With Criss-Cross Attention for Automatic Liver
Tumor Segmentation in {CT} Images},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3399--3410},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3198425},
doi = {10.1109/TCBB.2022.3198425},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/LiSWYFALYY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiSZZL23,
author = {Min Li and
Wenbo Shi and
Fuhao Zhang and
Min Zeng and
Yaohang Li},
title = {A Deep Learning Framework for Predicting Protein Functions With Co-Occurrence
of {GO} Terms},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {833--842},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3170719},
doi = {10.1109/TCBB.2022.3170719},
timestamp = {Mon, 01 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiSZZL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiWYHYW23,
author = {Zheng{-}Wei Li and
Qiankun Wang and
Chang{-}An Yuan and
Pengyong Han and
Zhu{-}Hong You and
Lei Wang},
title = {Predicting MiRNA-Disease Associations by Graph Representation Learning
Based on Jumping Knowledge Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2629--2638},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3196394},
doi = {10.1109/TCBB.2022.3196394},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiWYHYW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiWYL23,
author = {Jianwei Li and
Duanyang Wang and
Zhenwu Yang and
Ming Liu},
title = {{HEGANLDA:} {A} Computational Model for Predicting Potential Lncrna-Disease
Associations Based On Multiple Heterogeneous Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {388--398},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3136886},
doi = {10.1109/TCBB.2021.3136886},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiWYL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiXLMLFZL23,
author = {Aimin Li and
Siqi Xiong and
Junhuai Li and
Saurav Mallik and
Yajun Liu and
Rong Fei and
Hongfang Zhou and
Guangming Liu},
title = {AngClust: Angle Feature-Based Clustering for Short Time Series Gene
Expression Profiles},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1574--1580},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3192306},
doi = {10.1109/TCBB.2022.3192306},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiXLMLFZL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiangXZJYY23,
author = {Tingting Liang and
Congying Xia and
Ziqiang Zhao and
Yixuan Jiang and
Yuyu Yin and
Philip S. Yu},
title = {Transferring From Textual Entailment to Biomedical Named Entity Recognition},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2577--2586},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3236477},
doi = {10.1109/TCBB.2023.3236477},
timestamp = {Fri, 18 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiangXZJYY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiangYLZWLC23,
author = {Yixiong Liang and
Zhihua Yin and
Haotian Liu and
Hailong Zeng and
Jianxin Wang and
Jianfeng Liu and
Nanying Che},
title = {Weakly Supervised Deep Nuclei Segmentation With Sparsely Annotated
Bounding Boxes for {DNA} Image Cytometry},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {785--795},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3138189},
doi = {10.1109/TCBB.2021.3138189},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiangYLZWLC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LimaAFCS23,
author = {Diego de S. Lima and
Luiz J. A. Amichi and
Maria A. Fernandez and
Ademir Aparecido Constantino and
Fl{\'{a}}vio A. V. Seixas},
title = {NCYPred: {A} Bidirectional {LSTM} Network With Attention for {Y} {RNA}
and Short Non-Coding {RNA} Classification},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {557--565},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3131136},
doi = {10.1109/TCBB.2021.3131136},
timestamp = {Fri, 02 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LimaAFCS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LinDSCLVHDTGKM23,
author = {Chun Pang Lin and
Yajie Duan and
Davit Sargsyan and
Javier Cabrera and
Christine M. Livingston and
Robert Vogel and
John Hartman and
Mayukh Das and
Willem Talloen and
Helena Geys and
Evangelos D. Kanoulas and
Surya Mohanty},
title = {Automated Spot Counting in Microbiology},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3703--3714},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3317339},
doi = {10.1109/TCBB.2023.3317339},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/LinDSCLVHDTGKM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LinKLSJY0023,
author = {Xiangbin Lin and
Weizhuang Kong and
Jianxiu Li and
Xuexiao Shao and
Changting Jiang and
Ruilan Yu and
Xiaowei Li and
Bin Hu},
title = {Aberrant Static and Dynamic Functional Brain Network in Depression
Based on {EEG} Source Localization},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1876--1889},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3222592},
doi = {10.1109/TCBB.2022.3222592},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LinKLSJY0023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LinQWGZY23,
author = {Xuan Lin and
Zhe Quan and
Zhi{-}Jie Wang and
Yan Guo and
Xiangxiang Zeng and
Philip S. Yu},
title = {Effectively Identifying Compound-Protein Interaction Using Graph Neural
Representation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {932--943},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3198003},
doi = {10.1109/TCBB.2022.3198003},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LinQWGZY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LinTLL23,
author = {Jinghang Lin and
Xiaoran Tong and
Chenxi Li and
Qing Lu},
title = {Expectile Neural Networks for Genetic Data Analysis of Complex Diseases},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {352--359},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3146795},
doi = {10.1109/TCBB.2022.3146795},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LinTLL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuCSWZ23,
author = {Xue Liu and
Qian Cheng and
Dan Sun and
Wei Wei and
Zhiming Zheng},
title = {Anonymous Pattern Molecular Fingerprint and its Applications on Property
Identification},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3759--3771},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3322697},
doi = {10.1109/TCBB.2023.3322697},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/LiuCSWZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuHDZYFH23,
author = {Ran Liu and
Ye{-}Fan Hu and
Jin Du and
Bao{-}Zhong Zhang and
Thomas Yau and
Xiaodan Fan and
Jian{-}Dong Huang},
title = {Family-Specific Training Improves Linear {B} Cell Epitope Prediction
for Emerging Viruses},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3669--3680},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3311444},
doi = {10.1109/TCBB.2023.3311444},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/LiuHDZYFH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuJNWQZ23,
author = {Zhi{-}Hao Liu and
Cunmei Ji and
Jian{-}Cheng Ni and
Yu{-}Tian Wang and
Li{-}Juan Qiao and
Chun{-}Hou Zheng},
title = {Convolution Neural Networks Using Deep Matrix Factorization for Predicting
Circrna-Disease Association},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {277--284},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3138339},
doi = {10.1109/TCBB.2021.3138339},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuJNWQZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuKD23,
author = {Jiwen Liu and
Zhufang Kuang and
Lei Deng},
title = {{GCNPCA:} miRNA-Disease Associations Prediction Algorithm Based on
Graph Convolutional Neural Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1041--1052},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3203564},
doi = {10.1109/TCBB.2022.3203564},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuKD23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuLDLC23,
author = {Qie Liu and
Junhao Li and
Mingyu Dong and
Min Liu and
Yi Chai},
title = {Identification of Gene Regulatory Networks Using Variational Bayesian
Inference in the Presence of Missing Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {399--409},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3144418},
doi = {10.1109/TCBB.2022.3144418},
timestamp = {Sat, 20 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuLDLC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuLLWW23,
author = {Kun Liu and
Hong{-}Dong Li and
Yaohang Li and
Jun Wang and
Jianxin Wang},
title = {A Comparison of Topologically Associating Domain Callers Based on
Hi-C Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {15--29},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3147805},
doi = {10.1109/TCBB.2022.3147805},
timestamp = {Thu, 04 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuLLWW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuLMHDHL23,
author = {Qiaoliang Liu and
Fu Liu and
Yan Miao and
Jiaxue He and
Tian Dong and
Tao Hou and
Yun Liu},
title = {Virsearcher: Identifying Bacteriophages from Metagenomes by Combining
Convolutional Neural Network and Gene Information},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {763--774},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3161135},
doi = {10.1109/TCBB.2022.3161135},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuLMHDHL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuLTX23,
author = {Yongchang Liu and
Peiying Li and
Shikui Tu and
Lei Xu},
title = {RefinePocket: An Attention-Enhanced and Mask-Guided Deep Learning
Approach for Protein Binding Site Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3314--3321},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3265640},
doi = {10.1109/TCBB.2023.3265640},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuLTX23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuLXLPW23,
author = {Yingyi Liu and
Hong{-}Dong Li and
Yunpei Xu and
Yi{-}Wei Liu and
Xiaoqing Peng and
Jianxin Wang},
title = {IsoCell: An Approach to Enhance Single Cell Clustering by Integrating
Isoform-Level Expression Through Orthogonal Projection},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {465--475},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3147193},
doi = {10.1109/TCBB.2022.3147193},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuLXLPW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuLZHZLD23,
author = {Dayun Liu and
Xianghui Li and
Liangliang Zhang and
Xiaowen Hu and
Jiaxuan Zhang and
Zhirong Liu and
Lei Deng},
title = {{HGNNLDA:} Predicting lncRNA-Drug Sensitivity Associations via a Dual
Channel Hypergraph Neural Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3547--3555},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3302468},
doi = {10.1109/TCBB.2023.3302468},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/LiuLZHZLD23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuWZLW23,
author = {Qiaoming Liu and
Dong Wang and
Li Zhou and
Jie Li and
Guohua Wang},
title = {{MTGDC:} {A} Multi-Scale Tensor Graph Diffusion Clustering for Single-Cell
{RNA} Sequencing Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3056--3067},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3293112},
doi = {10.1109/TCBB.2023.3293112},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuWZLW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuYGSZ23,
author = {Jin{-}Xing Liu and
Meng{-}Meng Yin and
Ying{-}Lian Gao and
Junliang Shang and
Chun{-}Hou Zheng},
title = {{MSF-LRR:} Multi-Similarity Information Fusion Through Low-Rank Representation
to Predict Disease-Associated Microbes},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {534--543},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3146176},
doi = {10.1109/TCBB.2022.3146176},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuYGSZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuZ23,
author = {Kangchen Liu and
Xiujun Zhang},
title = {PiTLiD: Identification of Plant Disease From Leaf Images Based on
Convolutional Neural Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1278--1288},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3195291},
doi = {10.1109/TCBB.2022.3195291},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuZCQDZZ23,
author = {Shichao Liu and
Yang Zhang and
Yuxin Cui and
Yang Qiu and
Yifan Deng and
Zhongfei Zhang and
Wen Zhang},
title = {Enhancing Drug-Drug Interaction Prediction Using Deep Attention Neural
Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {976--985},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3172421},
doi = {10.1109/TCBB.2022.3172421},
timestamp = {Fri, 01 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/LiuZCQDZZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuZS23,
author = {Shuhui Liu and
Yupei Zhang and
Xuequn Shang},
title = {GLassonet: Identifying Discriminative Gene Sets Among Molecular Subtypes
of Breast Cancer},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1905--1916},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3220623},
doi = {10.1109/TCBB.2022.3220623},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuZS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuZW23,
author = {Qiaoming Liu and
Xudong Zhao and
Guohua Wang},
title = {A Clustering Ensemble Method for Cell Type Detection by Multiobjective
Particle Optimization},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {1--14},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3132400},
doi = {10.1109/TCBB.2021.3132400},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuZW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuZWWL23,
author = {Nian{-}Nian Liu and
Ze{-}Qun Zhang and
Yanan Wu and
Ying{-}Long Wang and
Ying Liang},
title = {CRBSP:Prediction of CircRNA-RBP Binding Sites Based on Multimodal
Intermediate Fusion},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2898--2906},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3272400},
doi = {10.1109/TCBB.2023.3272400},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuZWWL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuZZZG23,
author = {Jin{-}Xing Liu and
Dai{-}Jun Zhang and
Jing{-}Xiu Zhao and
Chun{-}Hou Zheng and
Ying{-}Lian Gao},
title = {Non-Negative Low-Rank Representation With Similarity Correction for
Cell Type Identification in scRNA-Seq Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3737--3747},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3319375},
doi = {10.1109/TCBB.2023.3319375},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/LiuZZZG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LuCLHS23,
author = {Xinguo Lu and
Guanyuan Chen and
Jinxin Li and
Xiangjin Hu and
Fengxu Sun},
title = {{MAGCN:} {A} Multiple Attention Graph Convolution Networks for Predicting
Synthetic Lethality},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2681--2689},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3221736},
doi = {10.1109/TCBB.2022.3221736},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LuCLHS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LuWMLS23,
author = {Zhaowu Lu and
Jun Wang and
Rui Mao and
Minhua Lu and
Jun Shi},
title = {Jointly Composite Feature Learning and Autism Spectrum Disorder Classification
Using Deep Multi-Output Takagi-Sugeno-Kang Fuzzy Inference Systems},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {476--488},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3163140},
doi = {10.1109/TCBB.2022.3163140},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LuWMLS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LuoWHH23,
author = {Xin Luo and
Liwei Wang and
Pengwei Hu and
Lun Hu},
title = {Predicting Protein-Protein Interactions Using Sequence and Network
Information via Variational Graph Autoencoder},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3182--3194},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3273567},
doi = {10.1109/TCBB.2023.3273567},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LuoWHH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LvLJHS23,
author = {Ji Lv and
Guixia Liu and
Yuan Ju and
Houhou Huang and
Ying Sun},
title = {{AADB:} {A} Manually Collected Database for Combinations of Antibiotics
With Adjuvants},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2827--2836},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3283221},
doi = {10.1109/TCBB.2023.3283221},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LvLJHS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LvLYWZ23,
author = {Zhilong Lv and
Yuexiao Lin and
Rui Yan and
Ying Wang and
Fa Zhang},
title = {TransSurv: Transformer-Based Survival Analysis Model Integrating Histopathological
Images and Genomic Data for Colorectal Cancer},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3411--3420},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3199244},
doi = {10.1109/TCBB.2022.3199244},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/LvLYWZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MaDBDXWLN23,
author = {Lijia Ma and
Wenwei Deng and
Yuan Bai and
Zhanwei Du and
Minfeng Xiao and
Lin Wang and
Jianqiang Li and
Asoke K. Nandi},
title = {Identifying Phage Sequences From Metagenomic Data Using Deep Neural
Network With Word Embedding and Attention Mechanism},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3772--3785},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3322870},
doi = {10.1109/TCBB.2023.3322870},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/MaDBDXWLN23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MaKD23,
author = {Zhihao Ma and
Zhufang Kuang and
Lei Deng},
title = {{NGCICM:} {A} Novel Deep Learning-Based Method for Predicting circRNA-miRNA
Interactions},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3080--3092},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3248787},
doi = {10.1109/TCBB.2023.3248787},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MaKD23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MaWHMSXCG23,
author = {Yuxin Ma and
Shuo Wang and
Yang Hua and
Ruhui Ma and
Tao Song and
Zhengui Xue and
Heng Cao and
Haibing Guan},
title = {Perceptual Data Augmentation for Biomedical Coronary Vessel Segmentation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2494--2505},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3188148},
doi = {10.1109/TCBB.2022.3188148},
timestamp = {Fri, 18 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MaWHMSXCG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MaZW23,
author = {Xiaoke Ma and
Wei Zhao and
Wenming Wu},
title = {Layer-Specific Modules Detection in Cancer Multi-Layer Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1170--1179},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3176859},
doi = {10.1109/TCBB.2022.3176859},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MaZW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MadadiMCSWY23,
author = {Yeganeh Madadi and
Aboozar Monavarfeshani and
Hao Chen and
W. Daniel Stamer and
Robert W. Williams and
Siamak Yousefi},
title = {Artificial Intelligence Models for Cell Type and Subtype Identification
Based on Single-Cell {RNA} Sequencing Data in Vision Science},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2837--2852},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3284795},
doi = {10.1109/TCBB.2023.3284795},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MadadiMCSWY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Maia0FM23,
author = {Marcelo Rodrigues de Holanda Maia and
Alexandre Plastino and
Alex Alves Freitas and
Jo{\~{a}}o Pedro de Magalh{\~{a}}es},
title = {Interpretable Ensembles of Classifiers for Uncertain Data With Bioinformatics
Applications},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1829--1841},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3218588},
doi = {10.1109/TCBB.2022.3218588},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Maia0FM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ManipurGPPM23,
author = {Ichcha Manipur and
Maurizio Giordano and
Marina Piccirillo and
Seetharaman Parashuraman and
Lucia Maddalena},
title = {Community Detection in Protein-Protein Interaction Networks and Applications},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {217--237},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3138142},
doi = {10.1109/TCBB.2021.3138142},
timestamp = {Fri, 08 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ManipurGPPM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Martin-VideV23,
author = {Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Algorithms for Computational Biology: Eighth Edition},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1626--1627},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3218808},
doi = {10.1109/TCBB.2022.3218808},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Martin-VideV23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MartinezPazGMCGHT23,
author = {Pedro Mart{\'{\i}}nez{-}Paz and
Javier Gomez{-}Pilar and
Marta Mart{\'{\i}}n{-}Fern{\'{a}}ndez and
Francisco C. Ceballos and
Esther G{\'{o}}mez{-}S{\'{a}}nchez and
Roberto Hornero and
Eduardo Tamayo},
title = {Gene Co-Expression Networks Offer New Perspectives on Sepsis Pathophysiology},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3660--3668},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3309998},
doi = {10.1109/TCBB.2023.3309998},
timestamp = {Fri, 26 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/MartinezPazGMCGHT23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MitraMKHR23,
author = {Anushka Mitra and
Shibambika Manna and
Raima Kundu and
Ditipriya Hazra and
Amlan Roychowdhury},
title = {Brute Force Virtual Drug Screening with Molecular Dynamics Simulation
and {MM/PBSA} to Find Potent Inhibitors of {METTL16}},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2356--2361},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3233670},
doi = {10.1109/TCBB.2022.3233670},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MitraMKHR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MondalB23,
author = {Abhijit Mondal and
Mukul S. Bansal},
title = {Generalizing the Domain-Gene-Species Reconciliation Framework to Microbial
Genes and Domains},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3511--3522},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3294480},
doi = {10.1109/TCBB.2023.3294480},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/MondalB23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MondalJSA23,
author = {Arnab Kumar Mondal and
Indu Joshi and
Pravendra Singh and
Prathosh AP},
title = {Clustering Single-Cell {RNA} Sequence Data Using Information Maximized
and Noise-Invariant Representations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1983--1994},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3227202},
doi = {10.1109/TCBB.2022.3227202},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MondalJSA23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MouJ23,
author = {Chenqi Mou and
Wenwen Ju},
title = {Sparse Triangular Decomposition for Computing Equilibria of Biological
Dynamic Systems Based on Chordal Graphs},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1667--1678},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3156759},
doi = {10.1109/TCBB.2022.3156759},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MouJ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MoultonW23,
author = {Vincent Moulton and
Taoyang Wu},
title = {Planar Rooted Phylogenetic Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1289--1297},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3185670},
doi = {10.1109/TCBB.2022.3185670},
timestamp = {Mon, 01 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MoultonW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/NazariZ23,
author = {Leyla Nazari and
Zahra Zinati},
title = {Gene Expression Classification for Biomarker Identification in Maize
Subjected to Various Biotic Stresses},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2170--2176},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3233844},
doi = {10.1109/TCBB.2022.3233844},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/NazariZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/NguyenQNT23,
author = {Tri Minh Nguyen and
Thomas P. Quinn and
Thin Nguyen and
Truyen Tran},
title = {Explaining Black Box Drug Target Prediction Through Model Agnostic
Counterfactual Samples},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1020--1029},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3190266},
doi = {10.1109/TCBB.2022.3190266},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/NguyenQNT23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/NiCLWYLX23,
author = {Zhichen Ni and
Honglong Chen and
Zhe Li and
Xiaomeng Wang and
Na Yan and
Weifeng Liu and
Feng Xia},
title = {{MSCET:} {A} Multi-Scenario Offloading Schedule for Biomedical Data
Processing and Analysis in Cloud-Edge-Terminal Collaborative Vehicular
Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2376--2386},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3131177},
doi = {10.1109/TCBB.2021.3131177},
timestamp = {Fri, 18 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/NiCLWYLX23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/OhashiMS23,
author = {Masataka Ohashi and
Shin{-}ichi Maeda and
Chikara Sato},
title = {Helical Three Dimensional Reconstruction Using Bayesian Optimization
for Cryogenic Electron Microscopy},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2970--2980},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3268793},
doi = {10.1109/TCBB.2023.3268793},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/OhashiMS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PaivaP23,
author = {Antonio R. Paiva and
Giovanni Pilloni},
title = {Inferring Microbial Biomass Yield and Cell Weight Using Probabilistic
Macrochemical Modeling},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {442--454},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3139290},
doi = {10.1109/TCBB.2021.3139290},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PaivaP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PanZLLZW23,
author = {Zhengsen Pan and
Shusen Zhou and
Tong Liu and
Chanjuan Liu and
Mujun Zang and
Qingjun Wang},
title = {{WVDL:} Weighted Voting Deep Learning Model for Predicting RNA-Protein
Binding Sites},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3322--3328},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3252276},
doi = {10.1109/TCBB.2023.3252276},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PanZLLZW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PanZZLZLW23,
author = {Zhengsen Pan and
Shusen Zhou and
Hailin Zou and
Chanjuan Liu and
Mujun Zang and
Tong Liu and
Qingjun Wang},
title = {{MCNN:} Multiple Convolutional Neural Networks for RNA-Protein Binding
Sites Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1180--1187},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3170367},
doi = {10.1109/TCBB.2022.3170367},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PanZZLZLW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PedroFPBMN23,
author = {Ricardo Wandr{\'{e}} Dias Pedro and
Ana Luiza Silveira Ferreira and
Rodolph Vinicius Siqueira Pessoa and
Almir Galv{\~{a}}o Vieira Bitencourt and
Ariane Machado{-}Lima and
F{\'{a}}tima L. S. Nunes},
title = {A Stochastic Grammar Approach to Mass Classification in Mammograms},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2302--2313},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3247144},
doi = {10.1109/TCBB.2023.3247144},
timestamp = {Fri, 21 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PedroFPBMN23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PengCDWL23,
author = {Wei Peng and
Zicheng Che and
Wei Dai and
Shoulin Wei and
Wei Lan},
title = {Predicting miRNA-Disease Associations From miRNA-Gene-Disease Heterogeneous
Network With Multi-Relational Graph Convolutional Network Model},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3363--3375},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3187739},
doi = {10.1109/TCBB.2022.3187739},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/PengCDWL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PengLDCFP23,
author = {Wei Peng and
Ming Liu and
Wei Dai and
Tielin Chen and
Yu Fu and
Yi Pan},
title = {Multi-View Feature Aggregation for Predicting Microbe-Disease Association},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2748--2758},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3132611},
doi = {10.1109/TCBB.2021.3132611},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PengLDCFP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PengZCDLW23,
author = {Xiaoqing Peng and
Wenjin Zhang and
Wanxin Cui and
Binrong Ding and
Qingtong Lyu and
Jianxin Wang},
title = {ADmeth: {A} Manually Curated Database for the Differential Methylation
in Alzheimer's Disease},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {843--851},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3178087},
doi = {10.1109/TCBB.2022.3178087},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PengZCDLW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PersiaLAMS23,
author = {Leandro E. Di Persia and
Tiago Lopez and
Agustin Arce and
Diego H. Milone and
Georgina Stegmayer},
title = {exp2GO: Improving Prediction of Functions in the Gene Ontology With
Expression Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {999--1008},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3167245},
doi = {10.1109/TCBB.2022.3167245},
timestamp = {Mon, 01 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PersiaLAMS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Pham23,
author = {Tuan D. Pham},
title = {Classification of Caenorhabditis Elegans Locomotion Behaviors With
Eigenfeature-Enhanced Long Short-Term Memory Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {206--216},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3153668},
doi = {10.1109/TCBB.2022.3153668},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Pham23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Pham23a,
author = {Tuan D. Pham},
title = {Prediction of Five-Year Survival Rate for Rectal Cancer Using Markov
Models of Convolutional Features of RhoB Expression on Tissue Microarray},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3195--3204},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3274211},
doi = {10.1109/TCBB.2023.3274211},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Pham23a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/QayyumRTMA23,
author = {Abdul Qayyum and
Imran Razzak and
M. Tanveer and
Moona Mazher and
Bandar Alhaqbani},
title = {High-Density Electroencephalography and Speech Signal Based Deep Framework
for Clinical Depression Diagnosis},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2587--2597},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3257175},
doi = {10.1109/TCBB.2023.3257175},
timestamp = {Fri, 18 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/QayyumRTMA23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/QianDZG23,
author = {Yuqing Qian and
Yijie Ding and
Quan Zou and
Fei Guo},
title = {Multi-View Kernel Sparse Representation for Identification of Membrane
Protein Types},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1234--1245},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3191325},
doi = {10.1109/TCBB.2022.3191325},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/QianDZG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/QianZJLD23,
author = {Yurong Qian and
Jingjing Zheng and
Ying Jiang and
Shaoqiu Li and
Lei Deng},
title = {Prediction of circRNA-MiRNA Association Using Singular Value Decomposition
and Graph Neural Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3461--3468},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3222777},
doi = {10.1109/TCBB.2022.3222777},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/QianZJLD23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/QiaoGJLZW23,
author = {Li{-}Juan Qiao and
Zhen Gao and
Cunmei Ji and
Zhi{-}Hao Liu and
Chun{-}Hou Zheng and
Yu{-}Tian Wang},
title = {Potential circRNA-Disease Association Prediction Using DeepWalk and
Nonnegative Matrix Factorization},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3154--3162},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3264466},
doi = {10.1109/TCBB.2023.3264466},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/QiaoGJLZW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/QiuE23,
author = {Junqiao Qiu and
Ali Ebnenasir},
title = {Exploring Scalable Parallelization for Edit Distance-Based Motif Search},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1587--1593},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3208867},
doi = {10.1109/TCBB.2022.3208867},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/QiuE23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/QuanCSWL23,
author = {Lijun Quan and
Xiaomin Chu and
Xiaoyu Sun and
Tingfang Wu and
Qiang Lyu},
title = {How Deepbics Quantifies Intensities of Transcription Factor-DNA Binding
and Facilitates Prediction of Single Nucleotide Variant Pathogenicity
With a Deep Learning Model Trained On ChIP-Seq Data Sets},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1594--1599},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3170343},
doi = {10.1109/TCBB.2022.3170343},
timestamp = {Fri, 28 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/QuanCSWL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/QureshiZAWLY23,
author = {Rizwan Qureshi and
Bin Zou and
Tanvir Alam and
Jia Wu and
Victor H. F. Lee and
Hong Yan},
title = {Computational Methods for the Analysis and Prediction of EGFR-Mutated
Lung Cancer Drug Resistance: Recent Advances in Drug Design, Challenges
and Future Prospects},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {238--255},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3141697},
doi = {10.1109/TCBB.2022.3141697},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/QureshiZAWLY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/RagiRDJCG23,
author = {Shankarachary Ragi and
Md Hafizur Rahman and
Jamison Duckworth and
Kalimuthu Jawaharraj and
Parvathi Chundi and
Venkataramana Gadhamshetty},
title = {Artificial Intelligence-Driven Image Analysis of Bacterial Cells and
Biofilms},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {174--184},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3138304},
doi = {10.1109/TCBB.2021.3138304},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/RagiRDJCG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/RanaCPM23,
author = {Vishal Rana and
Eli Chien and
Jianhao Peng and
Olgica Milenkovic},
title = {Small-Sample Estimation of the Mutational Support and Distribution
of SARS-CoV-2},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {668--682},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3165395},
doi = {10.1109/TCBB.2022.3165395},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/RanaCPM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/RanjanFFTD23,
author = {Ashish Ranjan and
Md. S. Fahad and
David Fern{\'{a}}ndez{-}Baca and
Sudhakar Tripathi and
Akshay Deepak},
title = {MCWS-Transformers: Towards an Efficient Modeling of Protein Sequences
via Multi Context-Window Based Scaled Self-Attention},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1188--1199},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3173789},
doi = {10.1109/TCBB.2022.3173789},
timestamp = {Wed, 17 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/RanjanFFTD23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/RanjanTD23,
author = {Ashish Ranjan and
Archana Tiwari and
Akshay Deepak},
title = {A Sub-Sequence Based Approach to Protein Function Prediction via Multi-Attention
Based Multi-Aspect Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {94--105},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3130923},
doi = {10.1109/TCBB.2021.3130923},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/RanjanTD23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/RaoCYMSZ23,
author = {Fan Rao and
Minghan Chen and
Defu Yang and
Bess Morrell and
Qianqian Song and
Wentao Zhu},
title = {scENT for Revealing Gene Clusters From Single-Cell RNA-Seq Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2266--2277},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3242260},
doi = {10.1109/TCBB.2023.3242260},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/RaoCYMSZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/RashidSK23,
author = {Shamima Rashid and
Suresh Sundaram and
Chee Keong Kwoh},
title = {Empirical Study of Protein Feature Representation on Deep Belief Networks
Trained With Small Data for Secondary Structure Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {955--966},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3168676},
doi = {10.1109/TCBB.2022.3168676},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/RashidSK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/RavikumarXAFR23,
author = {Visweswaran Ravikumar and
Tong Xu and
Wajd N. Al{-}Holou and
Salar Fattahi and
Arvind Rao},
title = {Efficient Inference of Spatially-Varying Gaussian Markov Random Fields
With Applications in Gene Regulatory Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2920--2932},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3282028},
doi = {10.1109/TCBB.2023.3282028},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/RavikumarXAFR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/RehmanTC23,
author = {Mobeen Ur Rehman and
Hilal Tayara and
Kil To Chong},
title = {DL-m6A: Identification of N6-Methyladenosine Sites in Mammals Using
Deep Learning Based on Different Encoding Schemes},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {904--911},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3192572},
doi = {10.1109/TCBB.2022.3192572},
timestamp = {Sun, 24 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/RehmanTC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/RenGZHZL23,
author = {Sheng Ren and
Kehua Guo and
Xiaokang Zhou and
Bin Hu and
Feihong Zhu and
Entao Luo},
title = {Medical Image Super-Resolution Based on Semantic Perception Transfer
Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2598--2609},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3212343},
doi = {10.1109/TCBB.2022.3212343},
timestamp = {Thu, 14 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/RenGZHZL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/RiahiWPCD23,
author = {Aryan Tajmir Riahi and
Geoffrey Woollard and
Fr{\'{e}}d{\'{e}}ric Poitevin and
Anne Condon and
Khanh Dao Duc},
title = {AlignOT: An Optimal Transport Based Algorithm for Fast 3D Alignment
With Applications to Cryogenic Electron Microscopy Density Maps},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3842--3850},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3327633},
doi = {10.1109/TCBB.2023.3327633},
timestamp = {Fri, 26 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/RiahiWPCD23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/RomashchenkoLRP23,
author = {Nikolai Romashchenko and
Benjamin Linard and
Eric Rivals and
Fabio Pardi},
title = {Computing Phylo-{\textdollar}k{\textdollar}k-Mers},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2889--2897},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3278049},
doi = {10.1109/TCBB.2023.3278049},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/RomashchenkoLRP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/RoyDG23,
author = {Satyaki Roy and
Pratyay Dutta and
Preetam Ghosh},
title = {Hierarchical Vaccine Allocation Based on Epidemiological and Behavioral
Considerations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2981--2991},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3265317},
doi = {10.1109/TCBB.2023.3265317},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/RoyDG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Sabahi23,
author = {Farnaz Sabahi},
title = {A Design of mRNA-Based {COVID-19} Vaccine Through Fuzzy Neural Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3648--3659},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3309650},
doi = {10.1109/TCBB.2023.3309650},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/Sabahi23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SaheedBOA23,
author = {Kayode Yakub Saheed and
Bukola Fatimah Balogun and
Braimah Joseph Odunayo and
Mustapha Abdulsalam},
title = {Microarray Gene Expression Data Classification via Wilcoxon Sign Rank
Sum and Novel Grey Wolf Optimized Ensemble Learning Models},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3575--3587},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3305429},
doi = {10.1109/TCBB.2023.3305429},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/SaheedBOA23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SainiS23,
author = {Manisha Saini and
Seba Susan},
title = {VGGIN-Net: Deep Transfer Network for Imbalanced Breast Cancer Dataset},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {752--762},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3163277},
doi = {10.1109/TCBB.2022.3163277},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SainiS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SequeirosO0B23,
author = {Carlos Sequeiros and
Irene Otero{-}Muras and
Carlos V{\'{a}}zquez and
Julio R. Banga},
title = {Global Optimization Approach for Parameter Estimation in Stochastic
Dynamic Models of Biosystems},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1971--1982},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3225675},
doi = {10.1109/TCBB.2022.3225675},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SequeirosO0B23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ShafieeFT23,
author = {Shima Shafiee and
Abdolhossein Fathi and
Ghazaleh Taherzadeh},
title = {SPPPred: Sequence-Based Protein-Peptide Binding Residue Prediction
Using Genetic Programming and Ensemble Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2029--2040},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3230540},
doi = {10.1109/TCBB.2022.3230540},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ShafieeFT23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ShahM23,
author = {Ekta Shah and
Pradipta Maji},
title = {Multi-View Kernel Learning for Identification of Disease Genes},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2278--2290},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3247033},
doi = {10.1109/TCBB.2023.3247033},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ShahM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ShenZDLW23,
author = {Yang Shen and
Jinlin Zhu and
Zhaohong Deng and
Wenwei Lu and
Hongchao Wang},
title = {EnsDeepDP: An Ensemble Deep Learning Approach for Disease Prediction
Through Metagenomics},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {986--998},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3201295},
doi = {10.1109/TCBB.2022.3201295},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ShenZDLW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ShengHGCXW23,
author = {Nan Sheng and
Lan Huang and
Ling Gao and
Yangkun Cao and
Xuping Xie and
Yan Wang},
title = {A Survey of Computational Methods and Databases for lncRNA-MiRNA Interaction
Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2810--2826},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3264254},
doi = {10.1109/TCBB.2023.3264254},
timestamp = {Wed, 01 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/ShengHGCXW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ShiFLXYY23,
author = {Haoyuan Shi and
Haisong Feng and
Zhenxiao Lu and
Wei Xue and
Congshan Yang and
Zhenyu Yue},
title = {{GRA-GCN:} Dense Granule Protein Prediction in Apicomplexa Protozoa
Through Graph Convolutional Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1963--1970},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3224836},
doi = {10.1109/TCBB.2022.3224836},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ShiFLXYY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ShiLW23,
author = {Xiaofeng Shi and
Cheng Liang and
Hong Wang},
title = {Multiview Robust Graph-Based Clustering for Cancer Subtype Identification},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {544--556},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3143897},
doi = {10.1109/TCBB.2022.3143897},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ShiLW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SiSZRL23,
author = {Jiasheng Si and
Liu Sun and
Deyu Zhou and
Jie Ren and
Lin Li},
title = {Biomedical Argument Mining Based on Sequential Multi-Task Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {864--874},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3173447},
doi = {10.1109/TCBB.2022.3173447},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SiSZRL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SinhaLM23,
author = {Aman Sinha and
Bo{-}Cheng Lai and
Jhih{-}Yong Mai},
title = {A Bin-Based Indexing for Scalable Range Join on Genomic Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2210--2222},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3240196},
doi = {10.1109/TCBB.2023.3240196},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SinhaLM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SiniosoglouASLSGW23,
author = {Ilias Siniosoglou and
Vasileios Argyriou and
Panagiotis G. Sarigiannidis and
Thomas Lagkas and
Antonios Sarigiannidis and
Sotirios K. Goudos and
Shaohua Wan},
title = {Post-Processing Fairness Evaluation of Federated Models: An Unsupervised
Approach in Healthcare},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2518--2529},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3269767},
doi = {10.1109/TCBB.2023.3269767},
timestamp = {Fri, 18 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SiniosoglouASLSGW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SobahyMA23,
author = {Turki M. Sobahy and
Olaa A. Motwalli and
Meshari Alazmi},
title = {AllelePred: {A} Simple Allele Frequencies Ensemble Predictor for Different
Single Nucleotide Variants},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {796--801},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3155659},
doi = {10.1109/TCBB.2022.3155659},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SobahyMA23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SongLL23,
author = {Xuekun Song and
Ke Liang and
Juntao Li},
title = {{WGRLR:} {A} Weighted Group Regularized Logistic Regression for Cancer
Diagnosis and Gene Selection},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1563--1573},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3203167},
doi = {10.1109/TCBB.2022.3203167},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SongLL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SongLWBXW23,
author = {Xueli Song and
Rongpeng Li and
Kaiming Wang and
Yuntong Bai and
Yuzhu Xiao and
Yu{-}Ping Wang},
title = {Joint Sparse Collaborative Regression on Imaging Genetics Study of
Schizophrenia},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1137--1146},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3172289},
doi = {10.1109/TCBB.2022.3172289},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SongLWBXW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SongTYYWDD23,
author = {Jinmiao Song and
Shengwei Tian and
Long Yu and
Qimeng Yang and
Yuanxu Wang and
Qiguo Dai and
Xiaodong Duan},
title = {{ISLMI:} Predicting lncRNA-miRNA Interactions Based on Information
Injection and Second-Order Graph Convolution Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1737--1745},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3215151},
doi = {10.1109/TCBB.2022.3215151},
timestamp = {Wed, 09 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SongTYYWDD23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SoyluS23,
author = {Necla Nisa Soylu and
Emre Sefer},
title = {{BERT2OME:} Prediction of 2{\({'}\)}-O-Methylation Modifications
From {RNA} Sequence by Transformer Architecture Based on {BERT}},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2177--2189},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3237769},
doi = {10.1109/TCBB.2023.3237769},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SoyluS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SpirovM23,
author = {Alexander V. Spirov and
Ekaterina M. Myasnikova},
title = {Problem of Domain/Building Block Preservation in the Evolution of
Biological Macromolecules and Evolutionary Computation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1345--1362},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3175908},
doi = {10.1109/TCBB.2022.3175908},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SpirovM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SteyaertAF23,
author = {Aranka Steyaert and
Pieter Audenaert and
Jan Fostier},
title = {Improved Node and Arc Multiplicity Estimation in De Bruijn Graphs
Using Approximate Inference in Conditional Random Fields},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1995--2006},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3229085},
doi = {10.1109/TCBB.2022.3229085},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SteyaertAF23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SuP23,
author = {Cui Su and
Jun Pang},
title = {Target Control of Asynchronous Boolean Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {707--719},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3133608},
doi = {10.1109/TCBB.2021.3133608},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SuP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SujamolRU23,
author = {S. Sujamol and
Vimina E. R. and
Krishnakumar U.},
title = {Improving miRNA Disease Association Prediction Accuracy Using Integrated
Similarity Information and Deep Autoencoders},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1125--1136},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3195514},
doi = {10.1109/TCBB.2022.3195514},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SujamolRU23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SunJWW23,
author = {Junwei Sun and
Haoping Ji and
Yingcong Wang and
Yanfeng Wang},
title = {Hybrid Projective Synchronization via {PI} Controller Based on {DNA}
Strand Displacement},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1081--1091},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3190397},
doi = {10.1109/TCBB.2022.3190397},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SunJWW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SunPLWYL23,
author = {Jing Sun and
Li Pan and
Bin Li and
Haoyue Wang and
Bo Yang and
Wenbin Li},
title = {A Construction Method of Dynamic Protein Interaction Networks by Using
Relevant Features of Gene Expression Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2790--2801},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3264241},
doi = {10.1109/TCBB.2023.3264241},
timestamp = {Sat, 28 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SunPLWYL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SunTH0L23,
author = {Chang Sun and
Rong Tang and
Jipeng Huang and
Jin{-}Mao Wei and
Jian Liu},
title = {A Deep Neural Network-Based Co-Coding Method to Predict Drug-Protein
Interactions by Analyzing the Feature Consistency Between Drugs and
Proteins},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2200--2209},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3237863},
doi = {10.1109/TCBB.2023.3237863},
timestamp = {Mon, 25 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SunTH0L23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SunWLZY23,
author = {Yi Sun and
Jian Wang and
Hongfei Lin and
Yijia Zhang and
Zhihao Yang},
title = {Knowledge Guided Attention and Graph Convolutional Networks for Chemical-Disease
Relation Extraction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {489--499},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3135844},
doi = {10.1109/TCBB.2021.3135844},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SunWLZY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SureshRU23,
author = {Nikhila T. Suresh and
Vimina E. R. and
Krishnakumar U.},
title = {Topology Driven Analysis of Protein - Protein Interactome for Prioritizing
Key Comorbid Genes via Sub Graph Based Average Path Length Centrality},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {742--751},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3140388},
doi = {10.1109/TCBB.2022.3140388},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SureshRU23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SutantoT23,
author = {Kevin Sutanto and
Marcel Turcotte},
title = {Assessing Global-Local Secondary Structure Fingerprints to Classify
{RNA} Sequences With Deep Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2736--2747},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3118358},
doi = {10.1109/TCBB.2021.3118358},
timestamp = {Wed, 01 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/SutantoT23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/TamirSY23,
author = {Azwad Tamir and
Milad Salem and
Jiann{-}Shiun Yuan},
title = {ProtEC: {A} Transformer Based Deep Learning System for Accurate Annotation
of Enzyme Commission Numbers},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3691--3702},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3311427},
doi = {10.1109/TCBB.2023.3311427},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/TamirSY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Tamura23,
author = {Takeyuki Tamura},
title = {Trimming Gene Deletion Strategies for Growth-Coupled Production in
Constraint-Based Metabolic Networks: TrimGdel},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1540--1549},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3185221},
doi = {10.1109/TCBB.2022.3185221},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Tamura23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Tamura23a,
author = {Takeyuki Tamura},
title = {MetNetComp: Database for Minimal and Maximal Gene-Deletion Strategies
for Growth-Coupled Production of Genome-Scale Metabolic Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3748--3758},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3317837},
doi = {10.1109/TCBB.2023.3317837},
timestamp = {Fri, 08 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/Tamura23a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/TangHK23,
author = {Mengyi Tang and
Kumbit Hwang and
Sung Ha Kang},
title = {StemP: {A} Fast and Deterministic Stem-Graph Approach for {RNA} Secondary
Structure Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3278--3291},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3253049},
doi = {10.1109/TCBB.2023.3253049},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/TangHK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/TangZWZ23,
author = {Chunyan Tang and
Cheng Zhong and
Mian Wang and
Fengfeng Zhou},
title = {{FMGNN:} {A} Method to Predict Compound-Protein Interaction With Pharmacophore
Features and Physicochemical Properties of Amino Acids},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1030--1040},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3172340},
doi = {10.1109/TCBB.2022.3172340},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/TangZWZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/TchendjiYDZ23,
author = {Vianney Kengne Tchendji and
Franklin Ingrid Kamga Youmbi and
Cl{\'{e}}mentin Tayou Djam{\'{e}}gni and
Jerry Lacmou Zeutouo},
title = {A Parallel Tiled and Sparsified Four-Russians Algorithm for Nussinov's
{RNA} Folding},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1795--1806},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3216826},
doi = {10.1109/TCBB.2022.3216826},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/TchendjiYDZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/TharmakulasingamGRF23,
author = {Mukunthan Tharmakulasingam and
Brian Gardner and
Roberto La Ragione and
Anil Fernando},
title = {Rectified Classifier Chains for Prediction of Antibiotic Resistance
From Multi-Labelled Data With Missing Labels},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {625--636},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3148577},
doi = {10.1109/TCBB.2022.3148577},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/TharmakulasingamGRF23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/TianFTY23,
author = {Zhen Tian and
Haichuan Fang and
Zhixia Teng and
Yangdong Ye},
title = {{GOGCN:} Graph Convolutional Network on Gene Ontology for Functional
Similarity Analysis of Genes},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1053--1064},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3181300},
doi = {10.1109/TCBB.2022.3181300},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/TianFTY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/TianZ0ZDYH23,
author = {Liangliang Tian and
Haixi Zhang and
Bin Liu and
Jiaqi Zhang and
Nannan Duan and
Aihong Yuan and
Yingqiu Huo},
title = {{VMF-SSD:} {A} Novel V-Space Based Multi-Scale Feature Fusion {SSD}
for Apple Leaf Disease Detection},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2016--2028},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3229114},
doi = {10.1109/TCBB.2022.3229114},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/TianZ0ZDYH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/TongLH23,
author = {Liyun Tong and
Jinling Liang and
Hong{-}xiang Hu},
title = {Fault Detectability of Asynchronous Switched Boolean Networks: {A}
Set Reachability Approach},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3876--3888},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3326172},
doi = {10.1109/TCBB.2023.3326172},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/TongLH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Tripathi023,
author = {Prasun Chandra Tripathi and
Soumen Bag},
title = {An Attention-Guided {CNN} Framework for Segmentation and Grading of
Glioma Using 3D {MRI} Scans},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1890--1904},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3220902},
doi = {10.1109/TCBB.2022.3220902},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Tripathi023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/TripathiMLCP23,
author = {Asmita Tripathi and
Rajkrishna Mondal and
Tapobrata Lahiri and
Deepak Chaurasiya and
Manoj Kumar Pal},
title = {TemPred: {A} Novel Protein Template Search Engine to Improve Protein
Structure Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2112--2121},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3233846},
doi = {10.1109/TCBB.2022.3233846},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/TripathiMLCP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/TuLCSH23,
author = {Deng{-}Yao Tu and
Peng{-}Chan Lin and
Hsin{-}Hung Chou and
Meng{-}Ru Shen and
Sun{-}Yuan Hsieh},
title = {Slice-Fusion: Reducing False Positives in Liver Tumor Detection for
Mask {R-CNN}},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3267--3277},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3265394},
doi = {10.1109/TCBB.2023.3265394},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/TuLCSH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/TuLLHS23,
author = {Wenhui Tu and
Guang Ling and
Feng Liu and
Fuyan Hu and
Xiangxiang Song},
title = {{GCSTI:} {A} Single-Cell Pseudotemporal Trajectory Inference Method
Based on Graph Compression},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2945--2958},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3266109},
doi = {10.1109/TCBB.2023.3266109},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/TuLLHS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/TunaGYCA23,
author = {Suha Tuna and
Cagri Gulec and
Emrah Yucesan and
Ayse Cirakoglu and
Yelda Tarkan Arguden},
title = {Gene Teams are on the Field: Evaluation of Variants in Gene-Networks
Using High Dimensional Modelling},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2959--2969},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3292245},
doi = {10.1109/TCBB.2023.3292245},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/TunaGYCA23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/TuncayE023,
author = {Erhun Giray Tuncay and
Riza Cenk Erdur and
Tim Conrad},
title = {Parallel Exchange of Randomized SubGraphs for Optimization of Network
Alignment: {PERSONA}},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2064--2077},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3231489},
doi = {10.1109/TCBB.2022.3231489},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/TuncayE023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/UnerKCTC23,
author = {Onur Can Uner and
Halil Ibrahim Kuru and
Ramazan Gokberk Cinbis and
{\"{O}}znur Tastan and
A. Erc{\"{u}}ment {\c{C}}i{\c{c}}ek},
title = {DeepSide: {A} Deep Learning Approach for Drug Side Effect Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {330--339},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3141103},
doi = {10.1109/TCBB.2022.3141103},
timestamp = {Sat, 20 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/UnerKCTC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/VillaverdeRHB23,
author = {Alejandro F. Villaverde and
Elba Raim{\'{u}}ndez{-}{\'{A}}lvarez and
Jan Hasenauer and
Julio R. Banga},
title = {Assessment of Prediction Uncertainty Quantification Methods in Systems
Biology},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1725--1736},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3213914},
doi = {10.1109/TCBB.2022.3213914},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/VillaverdeRHB23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WanJ23,
author = {Yunqi Wan and
Zhenran Jiang},
title = {TransCrispr: Transformer Based Hybrid Model for Predicting CRISPR/Cas9
Single Guide {RNA} Cleavage Efficiency},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1518--1528},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3201631},
doi = {10.1109/TCBB.2022.3201631},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WanJ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangCDM23,
author = {Qingbin Wang and
Kaiyi Chen and
Wanrong Dou and
Yutao Ma},
title = {Cross-Attention Based Multi-Resolution Feature Fusion Model for Self-Supervised
Cervical {OCT} Image Classification},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2541--2554},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3246979},
doi = {10.1109/TCBB.2023.3246979},
timestamp = {Fri, 18 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangCDM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangGQZ0023,
author = {Xiaolin Wang and
Hongli Gao and
Ren Qi and
Ruiqing Zheng and
Xin Gao and
Bin Yu},
title = {scBKAP: {A} Clustering Model for Single-Cell RNA-Seq Data Based on
Bisecting K-Means},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2007--2015},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3230098},
doi = {10.1109/TCBB.2022.3230098},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangGQZ0023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangHW23,
author = {Donglin Wang and
Don Hong and
Qiang Wu},
title = {Attention Deficit Hyperactivity Disorder Classification Based on Deep
Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1581--1586},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3170527},
doi = {10.1109/TCBB.2022.3170527},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangHW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangLP23,
author = {Yueyue Wang and
Xiujuan Lei and
Yi Pan},
title = {Microbe-Disease Association Prediction Using {RGCN} Through Microbe-Drug-Disease
Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3353--3362},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3247035},
doi = {10.1109/TCBB.2023.3247035},
timestamp = {Mon, 29 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/WangLP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangLW23,
author = {Xin Wang and
Jie Li and
Guohua Wang},
title = {MicroRNA Promoter Identification in Human With a Three-level Prediction
Method},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3600--3608},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3305992},
doi = {10.1109/TCBB.2023.3305992},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/WangLW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangLWHCN23,
author = {Huan Wang and
Ruigang Liu and
Baijing Wang and
Yifan Hong and
Ziwen Cui and
Qiufen Ni},
title = {Multitype Perception Method for Drug-Target Interaction Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3489--3498},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3285042},
doi = {10.1109/TCBB.2023.3285042},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/WangLWHCN23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangNG0P23,
author = {Yixin Wang and
Md. Noor{-}A{-}Rahim and
Erry Gunawan and
Yong Liang Guan and
Chueh{-}Loo Poh},
title = {Modelling, Characterization of Data-Dependent and Process-Dependent
Errors in {DNA} Data Storage},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2147--2158},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3233914},
doi = {10.1109/TCBB.2022.3233914},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangNG0P23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangQLL23,
author = {Jinxia Wang and
Liang Qiao and
Haibin Lv and
Zhihan Lv},
title = {Deep Transfer Learning-Based Multi-Modal Digital Twins for Enhancement
and Diagnostic Analysis of Brain {MRI} Image},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2407--2419},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3168189},
doi = {10.1109/TCBB.2022.3168189},
timestamp = {Fri, 18 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangQLL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangSLZXC23,
author = {Huadong Wang and
Jianhui Sun and
Mengya Liu and
Chun{-}Hou Zheng and
Junfeng Xia and
Na Cheng},
title = {frDSM: An Ensemble Predictor With Effective Feature Representation
for Deleterious Synonymous Mutation in Human Genome},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {371--377},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3167468},
doi = {10.1109/TCBB.2022.3167468},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangSLZXC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangW23,
author = {Huanhuan Wang and
Xiang Wu},
title = {{IPP:} An Intelligent Privacy-Preserving Scheme for Detecting Interactions
in Genome Association Studies},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {455--464},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3155774},
doi = {10.1109/TCBB.2022.3155774},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangWLZZLXZ23,
author = {Shanshan Wang and
Ruoyou Wu and
Cheng Li and
Juan Zou and
Ziyao Zhang and
Qiegen Liu and
Yan Xi and
Hairong Zheng},
title = {{PARCEL:} Physics-Based Unsupervised Contrastive Representation Learning
for Multi-Coil {MR} Imaging},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2659--2670},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3213669},
doi = {10.1109/TCBB.2022.3213669},
timestamp = {Sat, 28 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangWLZZLXZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangWS23,
author = {Junlin Wang and
Wenbo Wang and
Yi Shang},
title = {Protein Loop Modeling Using AlphaFold2},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3306--3313},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3264899},
doi = {10.1109/TCBB.2023.3264899},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangWS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangXYWLC23,
author = {Mei{-}Neng Wang and
Xue{-}Jun Xie and
Zhu{-}Hong You and
Leon Wong and
Li{-}Ping Li and
Zhan{-}Heng Chen},
title = {Combining {K} Nearest Neighbor With Nonnegative Matrix Factorization
for Predicting Circrna-Disease Associations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2610--2618},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3180903},
doi = {10.1109/TCBB.2022.3180903},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangXYWLC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangYFZCWC23,
author = {Wei Wang and
Xinhua Yu and
Bo Fang and
Yue Zhao and
Yongyong Chen and
Wei Wei and
Junxin Chen},
title = {Cross-Modality {LGE-CMR} Segmentation Using Image-to-Image Translation
Based Data Augmentation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2367--2375},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3140306},
doi = {10.1109/TCBB.2022.3140306},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangYFZCWC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangYYHZWH23,
author = {Xiaojuan Wang and
Wen Yang and
Yue Yang and
Yizhou He and
Jun Zhang and
Lusheng Wang and
Lun Hu},
title = {{PPISB:} {A} Novel Network-Based Algorithm of Predicting Protein-Protein
Interactions With Mixed Membership Stochastic Blockmodel},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1606--1612},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3196336},
doi = {10.1109/TCBB.2022.3196336},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangYYHZWH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangYYWWC23,
author = {Xingze Wang and
Guoxian Yu and
Zhongmin Yan and
Lin Wan and
Wei Wang and
Lizhen Cui},
title = {Lung Cancer Subtype Diagnosis by Fusing Image-Genomics Data and Hybrid
Deep Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {512--523},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3132292},
doi = {10.1109/TCBB.2021.3132292},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangYYWWC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangZC23,
author = {Hongxiao Wang and
Hao Zheng and
Danny Z. Chen},
title = {{TANGO:} {A} GO-Term Embedding Based Method for Protein Semantic Similarity
Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {694--706},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3143480},
doi = {10.1109/TCBB.2022.3143480},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangZC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangZJS23,
author = {Chao Wang and
Quan Zou and
Ying Ju and
Hua Shi},
title = {Enhancer-FRL: Improved and Robust Identification of Enhancers and
Their Activities Using Feature Representation Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {967--975},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3204365},
doi = {10.1109/TCBB.2022.3204365},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangZJS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangZL23,
author = {Ning Wang and
Jun Zhang and
Bin Liu},
title = {iDRBP-EL: Identifying {DNA-} and {RNA-} Binding Proteins Based on
Hierarchical Ensemble Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {432--441},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3136905},
doi = {10.1109/TCBB.2021.3136905},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangZL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangZLYZ23,
author = {Xinyi Wang and
Mingyang Zhang and
Chunlin Long and
Lin Yao and
Min Zhu},
title = {Self-Attention Based Neural Network for Predicting RNA-Protein Binding
Sites},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1469--1479},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3204661},
doi = {10.1109/TCBB.2022.3204661},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangZLYZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WedellCW23,
author = {Eleanor Wedell and
Yirong Cai and
Tandy J. Warnow},
title = {{SCAMPP:} Scaling Alignment-Based Phylogenetic Placement to Large
Trees},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1417--1430},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3170386},
doi = {10.1109/TCBB.2022.3170386},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WedellCW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WeiCZZFGLQ23,
author = {Ze{-}Gang Wei and
Xu Chen and
Xiao{-}Dan Zhang and
Hao Zhang and
Xing{-}Guo Fan and
Hongyan Gao and
Fei Liu and
Yu Qian},
title = {Comparison of Methods for Biological Sequence Clustering},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2874--2888},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3253138},
doi = {10.1109/TCBB.2023.3253138},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WeiCZZFGLQ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WilliamsTM23,
author = {Lucia Williams and
Alexandru I. Tomescu and
Brendan Mumey},
title = {Flow Decomposition With Subpath Constraints},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {360--370},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3147697},
doi = {10.1109/TCBB.2022.3147697},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WilliamsTM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WitmerTB23,
author = {Adam Witmer and
Rajkumar Theagarajan and
Bir Bhanu},
title = {Triplet-Net Classification of Contiguous Stem Cell Microscopy Images},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2314--2327},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3247957},
doi = {10.1109/TCBB.2023.3247957},
timestamp = {Wed, 12 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WitmerTB23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WuLCSH23,
author = {Tzu{-}Hsuan Wu and
Peng{-}Chan Lin and
Hsin{-}Hung Chou and
Meng{-}Ru Shen and
Sun{-}Yuan Hsieh},
title = {Pathogenicity Prediction of Single Amino Acid Variants With Machine
Learning Model Based on Protein Structural Energies},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {606--615},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3139048},
doi = {10.1109/TCBB.2021.3139048},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WuLCSH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WuM23,
author = {Wenming Wu and
Xiaoke Ma},
title = {Network-Based Structural Learning Nonnegative Matrix Factorization
Algorithm for Clustering of scRNA-Seq Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {566--575},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3161131},
doi = {10.1109/TCBB.2022.3161131},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WuM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WuTSX23,
author = {Tianyu Wu and
Yang Tang and
Qiyu Sun and
Luolin Xiong},
title = {Molecular Joint Representation Learning via Multi-Modal Information
of {SMILES} and Graphs},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3044--3055},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3253862},
doi = {10.1109/TCBB.2023.3253862},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WuTSX23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WuW00WL23,
author = {Kaitao Wu and
Lexiang Wang and
Bo Liu and
Yang Liu and
Yadong Wang and
Junyi Li},
title = {{PSPGO:} Cross-Species Heterogeneous Network Propagation for Protein
Function Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1713--1724},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3215257},
doi = {10.1109/TCBB.2022.3215257},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WuW00WL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WuZHM23,
author = {Wenming Wu and
Wensheng Zhang and
Weimin Hou and
Xiaoke Ma},
title = {Multi-View Clustering With Graph Learning for scRNA-Seq Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3535--3546},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3298334},
doi = {10.1109/TCBB.2023.3298334},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/WuZHM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/XiZGL023,
author = {Wen{-}Yu Xi and
Feng Zhou and
Ying{-}Lian Gao and
Jin{-}Xing Liu and
Chun{-}Hou Zheng},
title = {{LDCMFC:} Predicting Long Non-Coding {RNA} and Disease Association
Using Collaborative Matrix Factorization Based on Correntropy},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1774--1782},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3215194},
doi = {10.1109/TCBB.2022.3215194},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/XiZGL023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/XuDZLJZWQ23,
author = {Wuli Xu and
Lei Duan and
Huiru Zheng and
Jesse Li{-}Ling and
Weipeng Jiang and
Yidan Zhang and
Tingting Wang and
Ruiqi Qin},
title = {An Integrative Disease Information Network Approach to Similar Disease
Detection},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2724--2735},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3110127},
doi = {10.1109/TCBB.2021.3110127},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/XuDZLJZWQ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/XuXWZX23,
author = {Xiaolong Xu and
Haoyan Xu and
Liying Wang and
Yuanyuan Zhang and
Fu Xiao},
title = {Hygeia: {A} Multilabel Deep Learning-Based Classification Method for
Imbalanced Electrocardiogram Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2480--2493},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3176905},
doi = {10.1109/TCBB.2022.3176905},
timestamp = {Mon, 21 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/XuXWZX23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/XuYL023,
author = {Jie Xu and
Guanxue Yang and
Guohai Liu and
Hui Liu},
title = {Inferring Gene Regulatory Networks via Ensemble Path Consistency Algorithm
Based on Conditional Mutual Information},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1807--1816},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3220581},
doi = {10.1109/TCBB.2022.3220581},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/XuYL023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/XuanZCZJZN23,
author = {Ping Xuan and
Yue Zhao and
Hui Cui and
Linyun Zhan and
Qiangguo Jin and
Tiangang Zhang and
Toshiya Nakaguchi},
title = {Semantic Meta-Path Enhanced Global and Local Topology Learning for
lncRNA-Disease Association Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1480--1491},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3209571},
doi = {10.1109/TCBB.2022.3209571},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/XuanZCZJZN23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YanGJZ23,
author = {Ke Yan and
Xinlu Guo and
Zhiwei Ji and
Xiaokang Zhou},
title = {Deep Transfer Learning for Cross-Species Plant Disease Diagnosis Adapting
Mixed Subdomains},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2555--2564},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3135882},
doi = {10.1109/TCBB.2021.3135882},
timestamp = {Fri, 18 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YanGJZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YanLWGXL23,
author = {Ke Yan and
Hongwu Lv and
Jie Wen and
Yichen Guo and
Yong Xu and
Bin Liu},
title = {PreTP-Stack: Prediction of Therapeutic Peptides Based on the Stacked
Ensemble Learing},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1337--1344},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3183018},
doi = {10.1109/TCBB.2022.3183018},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YanLWGXL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YangFYW23,
author = {Chengzhuan Yang and
Lincong Fang and
Qian Yu and
Hui Wei},
title = {A Learning Robust and Discriminative Shape Descriptor for Plant Species
Identification},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {39--51},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3148463},
doi = {10.1109/TCBB.2022.3148463},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YangFYW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YangHHCL23,
author = {Cheng{-}Hong Yang and
Hsiu{-}Chen Huang and
Ming{-}Feng Hou and
Li{-}Yeh Chuang and
Yu{-}Da Lin},
title = {Fuzzy-Based Multiobjective Multifactor Dimensionality Reduction for
Epistasis Analysis},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {378--387},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3144303},
doi = {10.1109/TCBB.2022.3144303},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YangHHCL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YangLCXDD23,
author = {Jing Yang and
Zhengshu Lu and
Xu Chen and
Deling Xu and
Dewu Ding and
Yanrui Ding},
title = {GCNA-Cluster: {A} Gene Co-Expression Network Alignment to Cluster
Cancer Patients Algorithm for Identifying Subtypes of Pancreatic Ductal
Adenocarcinoma},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3556--3566},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3300102},
doi = {10.1109/TCBB.2023.3300102},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/YangLCXDD23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YangNLSLZZ23,
author = {Xixi Yang and
Zhangming Niu and
Yuansheng Liu and
Bosheng Song and
Weiqiang Lu and
Li Zeng and
Xiangxiang Zeng},
title = {Modality-DTA: Multimodality Fusion Strategy for Drug-Target Affinity
Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1200--1210},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3205282},
doi = {10.1109/TCBB.2022.3205282},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YangNLSLZZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YangXLFZGS23,
author = {Xiaohui Yang and
Zi{-}Jun Xi and
Jie{-}Ping Li and
Xin{-}Lei Feng and
Xiao{-}Hong Zhu and
Si{-}Yi Guo and
Chun{-}Peng Song},
title = {Deep Transfer Learning-Based Multi-Object Detection for Plant Stomata
Phenotypic Traits Intelligent Recognition},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {321--329},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3137810},
doi = {10.1109/TCBB.2021.3137810},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YangXLFZGS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YangYC23,
author = {Xinxing Yang and
Genke Yang and
Jian Chu},
title = {The Neural Metric Factorization for Computational Drug Repositioning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {731--741},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3144429},
doi = {10.1109/TCBB.2022.3144429},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YangYC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YangYC23a,
author = {Xinxing Yang and
Genke Yang and
Jian Chu},
title = {The Computational Drug Repositioning Without Negative Sampling},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1506--1517},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3212051},
doi = {10.1109/TCBB.2022.3212051},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YangYC23a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YangYC23b,
author = {Xinxing Yang and
Genke Yang and
Jian Chu},
title = {Self-Supervised Learning for Label Sparsity in Computational Drug
Repositioning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3245--3256},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3254163},
doi = {10.1109/TCBB.2023.3254163},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YangYC23b.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YangZCYLLC23,
author = {Jingbo Yang and
Denan Zhang and
Yiyang Cai and
Kexin Yu and
Mingming Li and
Lei Liu and
Xiujie Chen},
title = {Computational Prediction of Drug Phenotypic Effects Based on Substructure-Phenotype
Associations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {256--265},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3155453},
doi = {10.1109/TCBB.2022.3155453},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YangZCYLLC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YaoF23,
author = {Yin Yao and
Martin C. Frith},
title = {Improved DNA-Versus-Protein Homology Search for Protein Fossils},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1691--1699},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3177855},
doi = {10.1109/TCBB.2022.3177855},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YaoF23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YeZL23,
author = {Qing Ye and
Xiaolong Zhang and
Xiaoli Lin},
title = {Drug-Target Interaction Prediction via Graph Auto-Encoder and Multi-Subspace
Deep Neural Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2647--2658},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3206907},
doi = {10.1109/TCBB.2022.3206907},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YeZL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YuPLZZZ23,
author = {Zhong{-}Ze Yu and
Chunxiang Peng and
Jun Liu and
Biao Zhang and
Xiao{-}Gen Zhou and
Gui{-}Jun Zhang},
title = {DomBpred: Protein Domain Boundary Prediction Based on Domain-Residue
Clustering Using Inter-Residue Distance},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {912--922},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3175905},
doi = {10.1109/TCBB.2022.3175905},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YuPLZZZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YuQYWS23,
author = {Chunjiang Yu and
Xin Qi and
Wenying Yan and
Wentao Wu and
Bairong Shen},
title = {Next-Generation Sequencing Markup Language {(NGSML):} {A} Medium for
the Representation and Exchange of {NGS} Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {576--585},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3144170},
doi = {10.1109/TCBB.2022.3144170},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YuQYWS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YuZHCY23,
author = {Qiang Yu and
Xiao Zhang and
Yana Hu and
Shengpin Chen and
Liying Yang},
title = {A Method for Predicting {DNA} Motif Length Based On Deep Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {61--73},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3158471},
doi = {10.1109/TCBB.2022.3158471},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YuZHCY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YueXCWLZ23,
author = {Zhenyu Yue and
Ying Xiang and
Guojun Chen and
Xiaosong Wang and
Ke Li and
Youhua Zhang},
title = {PredinID: Predicting Pathogenic Inframe Indels in Human Through Graph
Convolution Neural Network With Graph Sampling Technique},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3226--3233},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3266232},
doi = {10.1109/TCBB.2023.3266232},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YueXCWLZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZahariasSW23,
author = {Paul Zaharias and
Vladimir Smirnov and
Tandy J. Warnow},
title = {Large-Scale Multiple Sequence Alignment and the Maximum Weight Trace
Alignment Merging Problem},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1700--1712},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3191848},
doi = {10.1109/TCBB.2022.3191848},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZahariasSW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZamanIJS23,
author = {Ahmed Bin Zaman and
Toki Tahmid Inan and
Kenneth A. De Jong and
Amarda Shehu},
title = {Adaptive Stochastic Optimization to Improve Protein Conformation Sampling},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2759--2771},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3134103},
doi = {10.1109/TCBB.2021.3134103},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZamanIJS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangFSXLG23,
author = {Huizhe Zhang and
Juntao Fang and
Yuping Sun and
Guobo Xie and
Zhiyi Lin and
Guosheng Gu},
title = {Predicting miRNA-Disease Associations via Node-Level Attention Graph
Auto-Encoder},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1308--1318},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3170843},
doi = {10.1109/TCBB.2022.3170843},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangFSXLG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangGLXC23,
author = {Zhiming Zhang and
Shangce Gao and
Zhenyu Lei and
Runqun Xiong and
Jiujun Cheng},
title = {Pareto Dominance Archive and Coordinated Selection Strategy-Based
Many-Objective Optimizer for Protein Structure Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2328--2340},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3247025},
doi = {10.1109/TCBB.2023.3247025},
timestamp = {Fri, 22 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangGLXC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangGLYSY23,
author = {Ying Zhang and
Fang Ge and
Fuyi Li and
Xibei Yang and
Jiangning Song and
Dong{-}Jun Yu},
title = {Prediction of Multiple Types of {RNA} Modifications via Biological
Language Model},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3205--3214},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3283985},
doi = {10.1109/TCBB.2023.3283985},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangGLYSY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangJ23,
author = {Shengli Zhang and
Yuanyuan Jing},
title = {PreVFs-RG: {A} Deep Hybrid Model for Identifying Virulence Factors
Based on Residual Block and Gated Recurrent Unit},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1926--1934},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3223038},
doi = {10.1109/TCBB.2022.3223038},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangJ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangL23,
author = {Wenxiang Zhang and
Bin Liu},
title = {iSnoDi-MDRF: Identifying snoRNA-Disease Associations Based on Multiple
Biological Data by Ranking Framework},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3013--3019},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3258448},
doi = {10.1109/TCBB.2023.3258448},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangLJFLZY23,
author = {Baoquan Zhang and
Chuyao Luo and
Hao Jiang and
Shanshan Feng and
Xutao Li and
Bowen Zhang and
Yunming Ye},
title = {Adaptive Transfer of Graph Neural Networks for Few-Shot Molecular
Property Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3863--3875},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3327452},
doi = {10.1109/TCBB.2023.3327452},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangLJFLZY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangSXCWWYSL23,
author = {Hao Zhang and
Honglei Song and
Xiaoming Xu and
Qixin Chang and
Mingkai Wang and
Yanjie Wei and
Zekun Yin and
Bertil Schmidt and
Weiguo Liu},
title = {RabbitFX: Efficient Framework for {FASTA/Q} File Parsing on Modern
Multi-Core Platforms},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2341--2348},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3219114},
doi = {10.1109/TCBB.2022.3219114},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangSXCWWYSL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangWLZLWL23,
author = {Xiaoshuai Zhang and
Lixin Wang and
Hucheng Liu and
Xiaofeng Zhang and
Bo Liu and
Yadong Wang and
Junyi Li},
title = {Prot2GO: Predicting {GO} Annotations From Protein Sequences and Interactions},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2772--2780},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3139841},
doi = {10.1109/TCBB.2021.3139841},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangWLZLWL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangXJQCQLW23,
author = {Yuanpeng Zhang and
Kaijian Xia and
Yizhang Jiang and
Pengjiang Qian and
Weiwei Cai and
Chengyu Qiu and
Khin Wee Lai and
Dongrui Wu},
title = {Multi-Modality Fusion {\&} Inductive Knowledge Transfer Underlying
Non-Sparse Multi-Kernel Learning and Distribution Adaption},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2387--2397},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3142748},
doi = {10.1109/TCBB.2022.3142748},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangXJQCQLW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangXWWYYGFH23,
author = {Qinhu Zhang and
Youhong Xu and
Siguo Wang and
Yong Wu and
Yuannong Ye and
Chang{-}An Yuan and
Valeriya V. Gribova and
Vladimir Fedorovich Filaretov and
De{-}Shuang Huang},
title = {Using Fully Convolutional Network to Locate Transcription Factor Binding
Sites Based on {DNA} Sequence and Conservation Information},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2690--2699},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3219831},
doi = {10.1109/TCBB.2022.3219831},
timestamp = {Sat, 28 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangXWWYYGFH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangYXGZ23,
author = {Hao Zhang and
Chuanxu Yan and
Yewei Xia and
Jihong Guan and
Shuigeng Zhou},
title = {Causal Gene Identification Using Non-Linear Regression-Based Independence
Tests},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {185--195},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3149864},
doi = {10.1109/TCBB.2022.3149864},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangYXGZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangZLH23,
author = {Han Zhang and
Zexuan Zhu and
Hui Li and
Shan He},
title = {Network Biomarker Detection From Gene Co-Expression Network Using
Gaussian Mixture Model Clustering},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3523--3534},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3297388},
doi = {10.1109/TCBB.2023.3297388},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangZLH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangZLY23,
author = {Jian Zhang and
Feng Zhou and
Xingchen Liang and
Guifu Yang},
title = {{SCAMPER:} Accurate Type-Specific Prediction of Calcium-Binding Residues
Using Sequence-Derived Features},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1406--1416},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3173437},
doi = {10.1109/TCBB.2022.3173437},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangZLY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangZZCLZ23,
author = {Fan Zhang and
Yawei Zhang and
Xiaoke Zhu and
Xiaopan Chen and
Fuhao Lu and
Xinhong Zhang},
title = {DeepSG2PPI: {A} Protein-Protein Interaction Prediction Method Based
on Deep Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2907--2919},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3268661},
doi = {10.1109/TCBB.2023.3268661},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangZZCLZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhaoBLZROX23,
author = {Bo Zhao and
Jun Bai and
Chen Li and
Jianfei Zhang and
Wenge Rong and
Yuanxin Ouyang and
Zhang Xiong},
title = {Enhancing Biomedical ReQA With Adversarial Hard In-Batch Negative
Samples},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2933--2944},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3261315},
doi = {10.1109/TCBB.2023.3261315},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhaoBLZROX23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhaoDNYLW23,
author = {Haochen Zhao and
Guihua Duan and
Peng Ni and
Cheng Yan and
Yaohang Li and
Jianxin Wang},
title = {RNPredATC: {A} Deep Residual Learning-Based Model With Applications
to the Prediction of Drug-ATC Code Association},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2712--2723},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3088256},
doi = {10.1109/TCBB.2021.3088256},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhaoDNYLW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhaoDYCLW23,
author = {Qichang Zhao and
Guihua Duan and
Mengyun Yang and
Zhongjian Cheng and
Yaohang Li and
Jianxin Wang},
title = {AttentionDTA: Drug-Target Binding Affinity Prediction by Sequence-Based
Deep Learning With Attention Mechanism},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {852--863},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3170365},
doi = {10.1109/TCBB.2022.3170365},
timestamp = {Mon, 01 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhaoDYCLW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhaoDZLDW23,
author = {Haochen Zhao and
Ruihong Du and
Ruikang Zhou and
Suning Li and
Guihua Duan and
Jianxin Wang},
title = {{SCN-MLTPP:} {A} Multi-Label Classifier for Predicting Therapeutic
Properties of Peptides Using the Stacked Capsule Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3715--3724},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3315330},
doi = {10.1109/TCBB.2023.3315330},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/ZhaoDZLDW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhaoDZZL023,
author = {Qichang Zhao and
Guihua Duan and
Haochen Zhao and
Kai Zheng and
Yaohang Li and
Jianxin Wang},
title = {{GIFDTI:} Prediction of Drug-Target Interactions Based on Global Molecular
and Intermolecular Interaction Representation Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1943--1952},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3225423},
doi = {10.1109/TCBB.2022.3225423},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhaoDZZL023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhaoLYNZ23,
author = {Huan Zhao and
Zhengwei Li and
Zhu{-}Hong You and
Ru Nie and
Tangbo Zhong},
title = {Predicting Mirna-Disease Associations Based on Neighbor Selection
Graph Attention Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1298--1307},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3204726},
doi = {10.1109/TCBB.2022.3204726},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/ZhaoLYNZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhaoLZZ23,
author = {Qing Zhao and
Jianqiang Li and
Linna Zhao and
Zhichao Zhu},
title = {Knowledge Guided Feature Aggregation for the Prediction of Chronic
Obstructive Pulmonary Disease With Chinese EMRs},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3343--3352},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3198798},
doi = {10.1109/TCBB.2022.3198798},
timestamp = {Tue, 30 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/ZhaoLZZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhaoSSHG23,
author = {Hongfei Zhao and
Cunqi Shao and
Zhiguo Shi and
Shibo He and
Zhefeng Gong},
title = {The Intrinsic Similarity of Topological Structure in Biological Neural
Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3292--3305},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3279443},
doi = {10.1109/TCBB.2023.3279443},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhaoSSHG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhaoYJHSH23,
author = {Weizhong Zhao and
Wenjie Yao and
Xingpeng Jiang and
Tingting He and
Chuan Shi and
Xiaohua Hu},
title = {An Explainable Framework for Predicting Drug-Side Effect Associations
via Meta-Path-Based Feature Learning in Heterogeneous Information
Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3635--3647},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3308094},
doi = {10.1109/TCBB.2023.3308094},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/ZhaoYJHSH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhaoYY023,
author = {Minghua Zhao and
Min Yuan and
Yaning Yang and
Steven X. Xu},
title = {{CPGL:} Prediction of Compound-Protein Interaction by Integrating
Graph Attention Network With Long Short-Term Memory Neural Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1935--1942},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3225296},
doi = {10.1109/TCBB.2022.3225296},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhaoYY023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhengCWWZ23,
author = {Yanfen Zheng and
Ben Cao and
Jieqiong Wu and
Bin Wang and
Qiang Zhang},
title = {High Net Information Density {DNA} Data Storage by the {MOPE} Encoding
Algorithm},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2992--3000},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3263521},
doi = {10.1109/TCBB.2023.3263521},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhengCWWZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhengSZ23,
author = {Vicky Zheng and
Ahmet Erdem Sariy{\"{u}}ce and
Jaroslaw Zola},
title = {Identifying Taxonomic Units in Metagenomic {DNA} Streams on Mobile
Devices},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1092--1103},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3172661},
doi = {10.1109/TCBB.2022.3172661},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/ZhengSZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhouLLTWH23,
author = {Xingxing Zhou and
Ming Ling and
Qingde Lin and
Shidi Tang and
Jiansheng Wu and
Haifeng Hu},
title = {Effectiveness Analysis of Multiple Initial States Simulated Annealing
Algorithm, a Case Study on the Molecular Docking Tool AutoDock Vina},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3830--3841},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3323552},
doi = {10.1109/TCBB.2023.3323552},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/ZhouLLTWH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhouYZSL23,
author = {Feng Zhou and
Meng{-}Meng Yin and
Jing{-}Xiu Zhao and
Junliang Shang and
Jin{-}Xing Liu},
title = {A Method Based On Dual-Network Information Fusion to Predict MiRNA-Disease
Associations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {52--60},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3133006},
doi = {10.1109/TCBB.2021.3133006},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhouYZSL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhuL23,
author = {Xinyu Zhu and
Weiming Lu},
title = {Multi-Label Classification With Dual Tail-Node Augmentation for Drug
Repositioning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3068--3079},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3292883},
doi = {10.1109/TCBB.2023.3292883},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhuL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhuLJLYYHZ23,
author = {Xianyu Zhu and
Jinjiang Li and
Runchang Jia and
Bin Liu and
Zhuohan Yao and
Aihong Yuan and
Yingqiu Huo and
Haixi Zhang},
title = {LAD-Net: {A} Novel Light Weight Model for Early Apple Leaf Pests and
Diseases Classification},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1156--1169},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3191854},
doi = {10.1109/TCBB.2022.3191854},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhuLJLYYHZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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