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@article{DBLP:journals/fbinf/AzumaOO23,
  author       = {Yusuke Azuma and
                  Hatsumi Okada and
                  Shuichi Onami},
  title        = {Systematic analysis of cell morphodynamics in C. elegans early embryogenesis},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1082531},
  doi          = {10.3389/FBINF.2023.1082531},
  timestamp    = {Fri, 18 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/AzumaOO23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/BaltoumasKPVAOFOPKP23,
  author       = {Fotis A. Baltoumas and
                  Evangelos Karatzas and
                  David P{\'{a}}ez{-}Espino and
                  Nefeli K. Venetsianou and
                  Eleni Aplakidou and
                  Anastasis Oulas and
                  Robert D. Finn and
                  Sergey Ovchinnikov and
                  Evangelos Pafilis and
                  Nikos Kyrpides and
                  Georgios A. Pavlopoulos},
  title        = {Exploring microbial functional biodiversity at the protein family
                  level - From metagenomic sequence reads to annotated protein clusters},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1157956},
  doi          = {10.3389/FBINF.2023.1157956},
  timestamp    = {Sat, 19 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/BaltoumasKPVAOFOPKP23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/BarbaMontoyaSK23,
  author       = {Jose Barba{-}Montoya and
                  Sudip Sharma and
                  Sudhir Kumar},
  title        = {Molecular timetrees using relaxed clocks and uncertain phylogenies},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1225807},
  doi          = {10.3389/FBINF.2023.1225807},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/BarbaMontoyaSK23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/BertolineLKT23,
  author       = {Let{\'{\i}}cia M. F. Bertoline and
                  Ang{\'{e}}lica Nakagawa Lima and
                  Jos{\'{e}} Eduardo Krieger and
                  Samantha K. Teixeira},
  title        = {Before and after AlphaFold2: An overview of protein structure prediction},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1120370},
  doi          = {10.3389/FBINF.2023.1120370},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/BertolineLKT23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/BueckleQLKPB23,
  author       = {Andreas Bueckle and
                  Catherine Qing and
                  Shefali Luley and
                  Yash Kumar and
                  Naval Pandey and
                  Katy B{\"{o}}rner},
  title        = {The {HRA} Organ Gallery affords immersive superpowers for building
                  and exploring the Human Reference Atlas with virtual reality},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1162723},
  doi          = {10.3389/FBINF.2023.1162723},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/BueckleQLKPB23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/CannerSG23,
  author       = {Samuel W. Canner and
                  Sudhanshu Shanker and
                  Jeffrey J. Gray},
  title        = {Structure-based neural network protein-carbohydrate interaction predictions
                  at the residue level},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1186531},
  doi          = {10.3389/FBINF.2023.1186531},
  timestamp    = {Tue, 12 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/CannerSG23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/ChoudharyKJT23,
  author       = {Sumita Choudhary and
                  Anup Kumar Kesavan and
                  Vijay Juneja and
                  Sheetal Thakur},
  title        = {Molecular modeling, simulation and docking of Rv1250 protein from
                  Mycobacterium tuberculosis},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1125479},
  doi          = {10.3389/FBINF.2023.1125479},
  timestamp    = {Fri, 18 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/ChoudharyKJT23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/CorcuffGDGGCMSB23,
  author       = {M{\'{e}}lanie Corcuff and
                  Marc Garibal and
                  Jean{-}Pierre Desvignes and
                  C{\'{e}}line Guien and
                  Coralie Grattepanche and
                  Gwena{\"{e}}lle Collod{-}B{\'{e}}roud and
                  Estelle M{\'{e}}noret and
                  David Salgado and
                  Christophe B{\'{e}}roud},
  title        = {Protein domains provide a new layer of information for classifying
                  human variations in rare diseases},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1127341},
  doi          = {10.3389/FBINF.2023.1127341},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/CorcuffGDGGCMSB23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/CoreyBC23,
  author       = {Robin A. Corey and
                  Marc Baaden and
                  Matthieu Chavent},
  title        = {A brief history of visualizing membrane systems in molecular dynamics
                  simulations},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1149744},
  doi          = {10.3389/FBINF.2023.1149744},
  timestamp    = {Tue, 12 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/CoreyBC23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/CvijovicP23,
  author       = {Marija Cvijovic and
                  Annikka Polster},
  title        = {Network medicine: facilitating a new view on complex diseases},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1163445},
  doi          = {10.3389/FBINF.2023.1163445},
  timestamp    = {Tue, 12 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/CvijovicP23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/DeschampsNJ23,
  author       = {Joran Deschamps and
                  Damian Dalle Nogare and
                  Florian Jug},
  title        = {Better research software tools to elevate the rate of scientific discovery
                  or why we need to invest in research software engineering},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1255159},
  doi          = {10.3389/FBINF.2023.1255159},
  timestamp    = {Tue, 12 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/DeschampsNJ23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/FanousPO23,
  author       = {Michael John Fanous and
                  Nir Pillar and
                  Aydogan Ozcan},
  title        = {Digital staining facilitates biomedical microscopy},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1243663},
  doi          = {10.3389/FBINF.2023.1243663},
  timestamp    = {Tue, 12 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/FanousPO23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/Fatoki23,
  author       = {Toluwase Hezekiah Fatoki},
  title        = {Human adenovirus {DNA} polymerase is evolutionarily and functionally
                  associated with human telomerase reverse transcriptase based on in
                  silico molecular characterization that implicate abacavir and zidovudine},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1123307},
  doi          = {10.3389/FBINF.2023.1123307},
  timestamp    = {Tue, 12 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/Fatoki23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/FernandesCGLSMFF23,
  author       = {Fabiano C. Fernandes and
                  Marlon H. Cardoso and
                  Abel Gil{-}Ley and
                  L{\'{\i}}via V. Luchi and
                  Maria G. L. da Silva and
                  Maria L. R. Macedo and
                  Cesar de la Fuente{-}Nunez and
                  Octavio L. Franco},
  title        = {Geometric deep learning as a potential tool for antimicrobial peptide
                  prediction},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1216362},
  doi          = {10.3389/FBINF.2023.1216362},
  timestamp    = {Tue, 12 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/FernandesCGLSMFF23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/FerreiraNRL23,
  author       = {Marcos Vinicius Ferreira and
                  Tatiane Nogueira Rios and
                  Ricardo Ara{\'{u}}jo Rios and
                  Tiago J. S. Lopes},
  title        = {A graph-based machine learning framework identifies critical properties
                  of {FVIII} that lead to hemophilia {A}},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1152039},
  doi          = {10.3389/FBINF.2023.1152039},
  timestamp    = {Tue, 12 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/FerreiraNRL23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/FoucheAFK23,
  author       = {Gwendal Fouch{\'{e}} and
                  Ferran Argelaguet and
                  Emmanuel Faure and
                  Charles Kervrann},
  title        = {Immersive and interactive visualization of 3D spatio-temporal data
                  using a space time hypercube: Application to cell division and morphogenesis
                  analysis},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.998991},
  doi          = {10.3389/FBINF.2023.998991},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/fbinf/FoucheAFK23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/FoucheZ23,
  author       = {Aziz Fouch{\'{e}} and
                  Andrei Yu. Zinovyev},
  title        = {Omics data integration in computational biology viewed through the
                  prism of machine learning paradigms},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1191961},
  doi          = {10.3389/FBINF.2023.1191961},
  timestamp    = {Tue, 12 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/FoucheZ23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/GawronHPPEFCSHAGSSDFO23,
  author       = {Piotr Gawron and
                  David Hoksza and
                  Janet Pi{\~{n}}ero and
                  Mar{\'{\i}}a Pe{\~{n}}a{-}Chilet and
                  Marina Esteban{-}Medina and
                  Jose Luis Fernandez{-}Rueda and
                  Vincenza Colonna and
                  Ewa Smula and
                  Laurent Heirendt and
                  Fran{\c{c}}ois Ancien and
                  Valentin Grou{\`{e}}s and
                  Venkata P. Satagopam and
                  Reinhard Schneider and
                  Joaqu{\'{\i}}n Dopazo and
                  Laura I. Furlong and
                  Marek Ostaszewski},
  title        = {Visualization of automatically combined disease maps and pathway diagrams
                  for rare diseases},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1101505},
  doi          = {10.3389/FBINF.2023.1101505},
  timestamp    = {Tue, 12 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/GawronHPPEFCSHAGSSDFO23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/GromihaKMVL23,
  author       = {M. Michael Gromiha and
                  Petras Kundrotas and
                  Marcelo Adrian Marti and
                  Ceslovas Venclovas and
                  Minghui Li},
  title        = {Editorial: Protein recognition and associated diseases},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1215141},
  doi          = {10.3389/FBINF.2023.1215141},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/fbinf/GromihaKMVL23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/HemedanSO23,
  author       = {Ahmed Abdelmonem Hemedan and
                  Reinhard Schneider and
                  Marek Ostaszewski},
  title        = {Applications of Boolean modeling to study the dynamics of a complex
                  disease and therapeutics responses},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1189723},
  doi          = {10.3389/FBINF.2023.1189723},
  timestamp    = {Tue, 12 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/HemedanSO23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/HjaltelinCJB23,
  author       = {Jessica Xin Hjaltelin and
                  Hannah Currant and
                  Isabella Friis J{\o}rgensen and
                  S{\o}ren Brunak},
  title        = {Visualising disease trajectories from population-wide data},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1112113},
  doi          = {10.3389/FBINF.2023.1112113},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/HjaltelinCJB23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/HoellingerMAGFFD23,
  author       = {Tristan Hoellinger and
                  Camille Mestre and
                  Hugues Aschard and
                  Wilfried Le Goff and
                  Sylvain Foissac and
                  Thomas Faraut and
                  Sarah Djebali},
  title        = {Enhancer/gene relationships: Need for more reliable genome-wide reference
                  sets},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1092853},
  doi          = {10.3389/FBINF.2023.1092853},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/HoellingerMAGFFD23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/HuHSZW23,
  author       = {Linghao Hu and
                  Blanche Ter Hofstede and
                  Dhavan Sharma and
                  Feng Zhao and
                  Alex J. Walsh},
  title        = {Comparison of phasor analysis and biexponential decay curve fitting
                  of autofluorescence lifetime imaging data for machine learning prediction
                  of cellular phenotypes},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1210157},
  doi          = {10.3389/FBINF.2023.1210157},
  timestamp    = {Tue, 12 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/HuHSZW23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/HusonC23,
  author       = {Daniel H. Huson and
                  Banu Cetinkaya},
  title        = {Visualizing incompatibilities in phylogenetic trees using consensus
                  outlines},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1155286},
  doi          = {10.3389/FBINF.2023.1155286},
  timestamp    = {Tue, 12 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/HusonC23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/HuzarSSKM23,
  author       = {Jared Huzar and
                  Madelyn Shenoy and
                  Maxwell D. Sanderford and
                  Sudhir Kumar and
                  Sayaka Miura},
  title        = {Bootstrap confidence for molecular evolutionary estimates from tumor
                  bulk sequencing data},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1090730},
  doi          = {10.3389/FBINF.2023.1090730},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/HuzarSSKM23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/Jeffery23,
  author       = {Constance J. Jeffery},
  title        = {Current successes and remaining challenges in protein function prediction},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1222182},
  doi          = {10.3389/FBINF.2023.1222182},
  timestamp    = {Tue, 12 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/Jeffery23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/KressPLT23,
  author       = {Arnaud Kress and
                  Olivier Poch and
                  Odile Lecompte and
                  Julie Dawn Thompson},
  title        = {Real or fake? Measuring the impact of protein annotation errors on
                  estimates of domain gain and loss events},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1178926},
  doi          = {10.3389/FBINF.2023.1178926},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/KressPLT23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/Lecca23,
  author       = {Paola Lecca},
  title        = {Editorial: Expert Opinions in Network bioinformatics: 2022},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1254668},
  doi          = {10.3389/FBINF.2023.1254668},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/Lecca23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/LeeHBSNBH23,
  author       = {Jover Lee and
                  James Hadfield and
                  Allison Black and
                  Thomas R. Sibley and
                  Richard A. Neher and
                  Trevor Bedford and
                  John Huddleston},
  title        = {Joint visualization of seasonal influenza serology and phylogeny to
                  inform vaccine composition},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1069487},
  doi          = {10.3389/FBINF.2023.1069487},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/fbinf/LeeHBSNBH23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/Levet23,
  author       = {Florian Levet},
  title        = {Optimizing Voronoi-based quantifications for reaching interactive
                  analysis of 3D localizations in the million range},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1249291},
  doi          = {10.3389/FBINF.2023.1249291},
  timestamp    = {Tue, 12 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/Levet23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/LiDZZPCZH23,
  author       = {Xueguang Li and
                  Mingyue Du and
                  Shanru Zuo and
                  Mingqing Zhou and
                  Qiyao Peng and
                  Ziyao Chen and
                  Junhua Zhou and
                  Quan{-}Yuan He},
  title        = {Deep convolutional neural networks using an active learning strategy
                  for cervical cancer screening and diagnosis},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1101667},
  doi          = {10.3389/FBINF.2023.1101667},
  timestamp    = {Wed, 17 Jan 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/fbinf/LiDZZPCZH23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/LiGQ23,
  author       = {Xinling Li and
                  Greg Gibson and
                  Peng Qiu},
  title        = {Gene representation in scRNA-seq is correlated with common motifs
                  at the 3{\({'}\)} end of transcripts},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1120290},
  doi          = {10.3389/FBINF.2023.1120290},
  timestamp    = {Tue, 12 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/LiGQ23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/LiHMWBL23,
  author       = {Chang Li and
                  Ian Hou and
                  Mingjia Ma and
                  Grace Wang and
                  Yongsheng Bai and
                  Xiaoming Liu},
  title        = {Orthogonal analysis of variants in {APOE} gene using in-silico approaches
                  reveals novel disrupting variants},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1122559},
  doi          = {10.3389/FBINF.2023.1122559},
  timestamp    = {Fri, 18 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/LiHMWBL23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/LiMPMLD23,
  author       = {Wanxin Li and
                  Jules Mirone and
                  Ashok Prasad and
                  Nina Miolane and
                  Carine Legrand and
                  Khanh Dao Duc},
  title        = {Orthogonal outlier detection and dimension estimation for improved
                  {MDS} embedding of biological datasets},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1211819},
  doi          = {10.3389/FBINF.2023.1211819},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/LiMPMLD23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/LiuLZ23,
  author       = {Yuexing Liu and
                  Yixue Li and
                  Tao Zeng},
  title        = {Multi-omics of extracellular vesicles: An integrative representation
                  of functional mediators and perspectives on lung disease study},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1117271},
  doi          = {10.3389/FBINF.2023.1117271},
  timestamp    = {Fri, 18 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/LiuLZ23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/LiuLZLSGGT23,
  author       = {Yi Liu and
                  Xiaoyan Liu and
                  Hantao Zhang and
                  Junlin Liu and
                  Chaofan Shan and
                  Yinglu Guo and
                  Xun Gong and
                  Min Tang},
  title        = {Editorial: Artificial intelligence in digital pathology image analysis},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1007986},
  doi          = {10.3389/FBINF.2023.1007986},
  timestamp    = {Fri, 18 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/LiuLZLSGGT23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/LucieriDA23,
  author       = {Adriano Lucieri and
                  Andreas Dengel and
                  Sheraz Ahmed},
  title        = {Translating theory into practice: assessing the privacy implications
                  of concept-based explanations for biomedical {AI}},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1194993},
  doi          = {10.3389/FBINF.2023.1194993},
  timestamp    = {Tue, 12 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/LucieriDA23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/MallikSSBZ23,
  author       = {Saurav Mallik and
                  Soumita Seth and
                  Amalendu Si and
                  Tapas Bhadra and
                  Zhongming Zhao},
  title        = {Optimal ranking and directional signature classification using the
                  integral strategy of multi-objective optimization-based association
                  rule mining of multi-omics data},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1182176},
  doi          = {10.3389/FBINF.2023.1182176},
  timestamp    = {Tue, 12 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/MallikSSBZ23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/MariaWC23,
  author       = {John P. Santa Maria and
                  Yuan Wang and
                  Luiz Miguel Camargo},
  title        = {Perspective on the challenges and opportunities of accelerating drug
                  discovery with artificial intelligence},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1121591},
  doi          = {10.3389/FBINF.2023.1121591},
  timestamp    = {Fri, 18 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/MariaWC23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/MarianoFSM23,
  author       = {Diego C. B. Mariano and
                  N{\'{e}}li Jos{\'{e}} da Fonseca Jr. and
                  Lucianna Helene Santos and
                  Raquel Cardoso de Melo Minardi},
  title        = {Editorial: Bioinformatics in the age of data science: algorithms,
                  methods, and tools applied from Omics to structural data},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1246859},
  doi          = {10.3389/FBINF.2023.1246859},
  timestamp    = {Tue, 12 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/MarianoFSM23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/MartinsMCBMPM23,
  author       = {Pedro Martins and
                  Diego C. B. Mariano and
                  Frederico Chaves Carvalho and
                  Luana Luiza Bastos and
                  Lucas Moraes and
                  Vivian Morais Paix{\~{a}}o and
                  Raquel Cardoso de Melo Minardi},
  title        = {Propedia v2.3: {A} novel representation approach for the peptide-protein
                  interaction database using graph-based structural signatures},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1103103},
  doi          = {10.3389/FBINF.2023.1103103},
  timestamp    = {Fri, 18 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/MartinsMCBMPM23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/MazeinABRWNADGSGKSO23,
  author       = {Alexander Mazein and
                  Marcio Luis Acencio and
                  Irina Balaur and
                  Adrien Rougny and
                  Danielle Welter and
                  Anna Niarakis and
                  Diana Ramirez Ardila and
                  Ugur Dogrusoz and
                  Piotr Gawron and
                  Venkata P. Satagopam and
                  Wei Gu and
                  Andreas Kremer and
                  Reinhard Schneider and
                  Marek Ostaszewski},
  title        = {A guide for developing comprehensive systems biology maps of disease
                  mechanisms: planning, construction and maintenance},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1197310},
  doi          = {10.3389/FBINF.2023.1197310},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/fbinf/MazeinABRWNADGSGKSO23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/McClureRWT23,
  author       = {Ryan S. McClure and
                  Yvonne Rericha and
                  Katrina M. Waters and
                  Robyn L. Tanguay},
  title        = {3{\({'}\)} RNA-seq is superior to standard RNA-seq in cases of
                  sparse data but inferior at identifying toxicity pathways in a model
                  organism},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1234218},
  doi          = {10.3389/FBINF.2023.1234218},
  timestamp    = {Tue, 12 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/McClureRWT23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/MolbertH23,
  author       = {Carla M{\"{o}}lbert and
                  Laleh Haghverdi},
  title        = {Adjustments to the reference dataset design improve cell type label
                  transfer},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1150099},
  doi          = {10.3389/FBINF.2023.1150099},
  timestamp    = {Fri, 18 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/MolbertH23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/MunarkoRN23,
  author       = {Yuda Munarko and
                  Anand K. Rampadarath and
                  David P. Nickerson},
  title        = {{CASBERT:} BERT-based retrieval for compositely annotated biosimulation
                  model entities},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1107467},
  doi          = {10.3389/FBINF.2023.1107467},
  timestamp    = {Sat, 19 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/MunarkoRN23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/MuthamilselvanP23,
  author       = {Sangeetha Muthamilselvan and
                  Ashok Palaniappan},
  title        = {BrcaDx: precise identification of breast cancer from expression data
                  using a minimal set of features},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1103493},
  doi          = {10.3389/FBINF.2023.1103493},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/MuthamilselvanP23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/NgRK23,
  author       = {Teng Ann Ng and
                  Shamima Rashid and
                  Chee Keong Kwoh},
  title        = {Virulence network of interacting domains of influenza a and mouse
                  proteins},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1123993},
  doi          = {10.3389/FBINF.2023.1123993},
  timestamp    = {Fri, 18 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/NgRK23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/NielsenMJ23,
  author       = {Flemming Damgaard Nielsen and
                  Jakob M{\o}ller{-}Jensen and
                  Mikkel Girke J{\o}rgensen},
  title        = {Adding context to the pneumococcal core genes using bioinformatic
                  analysis of the intergenic pangenome of Streptococcus pneumoniae},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1074212},
  doi          = {10.3389/FBINF.2023.1074212},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/NielsenMJ23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/NissanHADGMCGS23,
  author       = {Nour Nissan and
                  Julia Hooker and
                  Eric Arezza and
                  Kevin Dick and
                  Ashkan Golshani and
                  Benjamin Mimee and
                  Elroy Cober and
                  James R. Green and
                  Bahram Samanfar},
  title        = {Large-scale data mining pipeline for identifying novel soybean genes
                  involved in resistance against the soybean cyst nematode},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1199675},
  doi          = {10.3389/FBINF.2023.1199675},
  timestamp    = {Tue, 12 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/NissanHADGMCGS23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/OchoaM23,
  author       = {Juan G. D{\'{\i}}az Ochoa and
                  Andr{\'{e}} Marquardt},
  title        = {Editorial: Transparent machine learning in bio-medicine},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1264803},
  doi          = {10.3389/FBINF.2023.1264803},
  timestamp    = {Tue, 12 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/OchoaM23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/OchoaMC23,
  author       = {Juan G. D{\'{\i}}az Ochoa and
                  Lukas Maier and
                  Orsolya Csisz{\'{a}}r},
  title        = {Bayesian logical neural networks for human-centered applications in
                  medicine},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1082941},
  doi          = {10.3389/FBINF.2023.1082941},
  timestamp    = {Fri, 18 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/OchoaMC23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/OlatunjiC23,
  author       = {Isaac Olatunji and
                  Feng Cui},
  title        = {Multimodal {AI} for prediction of distant metastasis in carcinoma
                  patients},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1131021},
  doi          = {10.3389/FBINF.2023.1131021},
  timestamp    = {Tue, 12 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/OlatunjiC23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/OuyangEC23,
  author       = {Wei Ouyang and
                  Kevin W. Eliceiri and
                  Beth A. Cimini},
  title        = {Moving beyond the desktop: prospects for practical bioimage analysis
                  via the web},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1233748},
  doi          = {10.3389/FBINF.2023.1233748},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/fbinf/OuyangEC23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/PapettiSNTLCBVPCN23,
  author       = {Daniele M. Papetti and
                  Simone Spolaor and
                  Iman Nazari and
                  Andrea Tirelli and
                  Tommaso Leonardi and
                  Chiara Caprioli and
                  Daniela Besozzi and
                  Thalia Vlachou and
                  Pier Giuseppe Pelicci and
                  Paolo Cazzaniga and
                  Marco S. Nobile},
  title        = {Barcode demultiplexing of nanopore sequencing raw signals by unsupervised
                  machine learning},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1067113},
  doi          = {10.3389/FBINF.2023.1067113},
  timestamp    = {Tue, 12 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/PapettiSNTLCBVPCN23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/PavanDET23,
  author       = {Ricardo R. Pavan and
                  Fabiola Diniz and
                  Samir El{-}Dahr and
                  Giovane G. Tortelote},
  title        = {Gene length is a pivotal feature to explain disparities in transcript
                  capture between single transcriptome techniques},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1144266},
  doi          = {10.3389/FBINF.2023.1144266},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/PavanDET23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/PrattPM23,
  author       = {Dexter Pratt and
                  Rudolf T. Pillich and
                  John H. Morris},
  title        = {Translating desktop success to the web in the cytoscape project},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1125949},
  doi          = {10.3389/FBINF.2023.1125949},
  timestamp    = {Fri, 18 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/PrattPM23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/RodriguesACBBAA23,
  author       = {Diego Lucas Neres Rodrigues and
                  Juan Carlos Ariute and
                  Francielly Morais Rodrigues da Costa and
                  Ana Maria Benko{-}Iseppon and
                  Debmalya Barh and
                  Vasco Ariston de Carvalho Azevedo and
                  Fl{\'{a}}via Figueira Aburjaile},
  title        = {PanViTa: Pan Virulence and resisTance analysis},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1070406},
  doi          = {10.3389/FBINF.2023.1070406},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/RodriguesACBBAA23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/RoyGK23,
  author       = {Swarup Roy and
                  Pietro Hiram Guzzi and
                  Jugal Kalita},
  title        = {Editorial: Graph representation learning in biological network},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1222711},
  doi          = {10.3389/FBINF.2023.1222711},
  timestamp    = {Tue, 12 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/RoyGK23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/RuedaGSPFS23,
  author       = {Ana Julia Velez Rueda and
                  Luis Alberto Gonano and
                  Agust{\'{\i}}n Garc{\'{\i}}a Smith and
                  Gustavo D. Parisi and
                  Mar{\'{\i}}a Silvina Fornasari and
                  Leandro Mat{\'{\i}}as Sommese},
  title        = {CardIAP: calcium transients confocal image analysis tool},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1137815},
  doi          = {10.3389/FBINF.2023.1137815},
  timestamp    = {Tue, 12 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/RuedaGSPFS23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/SoelistyoUL23,
  author       = {Christopher J. Soelistyo and
                  Kristina Ulicna and
                  Alan R. Lowe},
  title        = {Machine learning enhanced cell tracking},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1228989},
  doi          = {10.3389/FBINF.2023.1228989},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/SoelistyoUL23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/StahlbomMYL23,
  author       = {Emilia St{\aa}hlbom and
                  Jesper Molin and
                  Anders Ynnerman and
                  Claes Lundstr{\"{o}}m},
  title        = {The thorny complexities of visualization research for clinical settings:
                  {A} case study from genomics},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1112649},
  doi          = {10.3389/FBINF.2023.1112649},
  timestamp    = {Fri, 18 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/StahlbomMYL23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/TezcanDCU23,
  author       = {Enes Fahri Tezcan and
                  Yigit Demirtas and
                  Zeynep Petek Cakar and
                  Kutlu {\"{O}}. {\"{U}}lgen},
  title        = {Comprehensive genome-scale metabolic model of the human pathogen Cryptococcus
                  neoformans: {A} platform for understanding pathogen metabolism and
                  identifying new drug targets},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1121409},
  doi          = {10.3389/FBINF.2023.1121409},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/TezcanDCU23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/ThompsonVSH23,
  author       = {Tyler N. Thompson and
                  Anna Vickrey and
                  Michael D. Shapiro and
                  Edward Hsu},
  title        = {A computer vision framework for quantification of feather growth patterns},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1073918},
  doi          = {10.3389/FBINF.2023.1073918},
  timestamp    = {Fri, 18 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/ThompsonVSH23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/TufferyD23,
  author       = {Pierre Tuff{\'{e}}ry and
                  Philippe Derreumaux},
  title        = {A refined pH-dependent coarse-grained model for peptide structure
                  prediction in aqueous solution},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1113928},
  doi          = {10.3389/FBINF.2023.1113928},
  timestamp    = {Fri, 18 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/TufferyD23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/ValdesSRPLN23,
  author       = {Camilo Valdes and
                  Vitalii Stebliankin and
                  Daniel Ruiz{-}Perez and
                  Ji In Park and
                  Hajeong Lee and
                  Giri Narasimhan},
  title        = {Microbiome maps: Hilbert curve visualizations of metagenomic profiles},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1154588},
  doi          = {10.3389/FBINF.2023.1154588},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/ValdesSRPLN23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/VignonClementelJDKLLKSD23,
  author       = {Irene E. Vignon{-}Clementel and
                  Nick Jagiella and
                  Jules Dichamp and
                  J{\'{e}}r{\^{o}}me Kowalski and
                  Wiltrud Lederle and
                  Hendrik Laue and
                  Fabian Kiessling and
                  Oliver Sedlaczek and
                  Dirk Drasdo},
  title        = {A proof-of-concept pipeline to guide evaluation of tumor tissue perfusion
                  by dynamic contrast-agent imaging: Direct simulation and inverse tracer-kinetic
                  procedures},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.977228},
  doi          = {10.3389/FBINF.2023.977228},
  timestamp    = {Sat, 19 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/VignonClementelJDKLLKSD23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/VivianiMTBUG23,
  author       = {Marco Viviani and
                  Marilisa Montemurro and
                  Livio Trusolino and
                  Andrea Bertotti and
                  Gianvito Urgese and
                  Elena Grassi},
  title        = {EGAsubmitter: {A} software to automate submission of nucleic acid
                  sequencing data to the European Genome-phenome Archive},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1143014},
  doi          = {10.3389/FBINF.2023.1143014},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/VivianiMTBUG23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/WaddellNDETCDB23,
  author       = {T. Waddell and
                  Ana I. L. Namburete and
                  Paul Duckworth and
                  N. Eichert and
                  H. Thomaides{-}Brears and
                  D. J. Cuthbertson and
                  J. P. Despres and
                  Michael Brady},
  title        = {Bayesian networks and imaging-derived phenotypes highlight the role
                  of fat deposition in {COVID-19} hospitalisation risk},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1163430},
  doi          = {10.3389/FBINF.2023.1163430},
  timestamp    = {Fri, 20 Oct 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/WaddellNDETCDB23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/WajnbergARSSMMOGLOC23,
  author       = {Gabriel Wajnberg and
                  Eric P. Allain and
                  Jeremy W. Roy and
                  Shruti Srivastava and
                  Daniel Saucier and
                  Pier Morin and
                  Alier Marrero and
                  Colleen O'connell and
                  Anirban Ghosh and
                  Stephen M. Lewis and
                  Rodney J. Ouellette and
                  Nicolas Crapoulet},
  title        = {Application of annotation-agnostic {RNA} sequencing data analysis
                  tools for biomarker discovery in liquid biopsy},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1127661},
  doi          = {10.3389/FBINF.2023.1127661},
  timestamp    = {Tue, 12 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/WajnbergARSSMMOGLOC23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/WangZZMW23,
  author       = {Zihao Wang and
                  Yun Zhou and
                  Yu Zhang and
                  Yu K. Mo and
                  Yijie Wang},
  title        = {{XMR:} an explainable multimodal neural network for drug response
                  prediction},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1164482},
  doi          = {10.3389/FBINF.2023.1164482},
  timestamp    = {Tue, 12 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/WangZZMW23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/WeiG23,
  author       = {Wenhua Wei and
                  Hui Guo},
  title        = {Leveraging primate-specific genomic information for genetic studies
                  of complex diseases},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1161167},
  doi          = {10.3389/FBINF.2023.1161167},
  timestamp    = {Fri, 22 Dec 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/fbinf/WeiG23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/YamaneI23,
  author       = {Haruki Yamane and
                  Takashi Ishida},
  title        = {Helix encoder: a compound-protein interaction prediction model specifically
                  designed for class {A} GPCRs},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1193025},
  doi          = {10.3389/FBINF.2023.1193025},
  timestamp    = {Tue, 12 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/YamaneI23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/YounesyPMK23,
  author       = {Hamid Younesy and
                  Joseph Pober and
                  Torsten M{\"{o}}ller and
                  Mohammad M. Karimi},
  title        = {ModEx: a general purpose computer model exploration system},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1153800},
  doi          = {10.3389/FBINF.2023.1153800},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/YounesyPMK23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/ZengZ23,
  author       = {Tao Zeng and
                  Chuanchao Zhang},
  title        = {Editorial: Expert opinions in integrative bioinformatics: 2022},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1218466},
  doi          = {10.3389/FBINF.2023.1218466},
  timestamp    = {Tue, 12 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/ZengZ23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/ZidaneMBRBCS23,
  author       = {Mohammed Zidane and
                  Ahmad Makky and
                  Matthias Bruhns and
                  Alexander Rochwarger and
                  Sepideh Babaei and
                  Manfred Claassen and
                  Christian M. Sch{\"{u}}rch},
  title        = {A review on deep learning applications in highly multiplexed tissue
                  imaging data analysis},
  journal      = {Frontiers Bioinform.},
  volume       = {3},
  year         = {2023},
  url          = {https://doi.org/10.3389/fbinf.2023.1159381},
  doi          = {10.3389/FBINF.2023.1159381},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fbinf/ZidaneMBRBCS23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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