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@article{DBLP:journals/bmcsb/BelorkarVW18,
author = {Abha Belorkar and
Rajanikanth Vadigepalli and
Limsoon Wong},
title = {SPSNet: subpopulation-sensitive network-based analysis of heterogeneous
gene expression data},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {{S-2}},
pages = {93--108},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0538-1},
doi = {10.1186/S12918-018-0538-1},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BelorkarVW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BuigaETS18,
author = {Petronela Buiga and
Ari Elson and
Lydia Tabernero and
Jean{-}Marc Schwartz},
title = {Regulation of dual specificity phosphatases in breast cancer during
initial treatment with Herceptin: a Boolean model analysis},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {13--24},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0534-5},
doi = {10.1186/S12918-018-0534-5},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BuigaETS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CogillSYW18,
author = {Steven B. Cogill and
Anand K. Srivastava and
Mary Qu Yang and
Liangjiang Wang},
title = {Co-expression of long non-coding RNAs and autism risk genes in the
developing human brain},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {7},
pages = {65--73},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0639-x},
doi = {10.1186/S12918-018-0639-X},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CogillSYW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CuiY18,
author = {Fangshu Cui and
Bo Yuan},
title = {Fixation probability of a beneficial mutation conferring decreased
generation time in changing environments},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {4},
pages = {157--166},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0575-9},
doi = {10.1186/S12918-018-0575-9},
timestamp = {Sat, 06 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CuiY18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DaiLLLL18,
author = {Wentao Dai and
Quanxue Li and
Bing{-}Ya Liu and
Yi{-}Xue Li and
Yuan{-}Yuan Li},
title = {Differential networking meta-analysis of gastric cancer across Asian
and American racial groups},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {4},
pages = {17--28},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0564-z},
doi = {10.1186/S12918-018-0564-Z},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/DaiLLLL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FuWHLJOZG18,
author = {Min Fu and
Wenming Wu and
Xiafei Hong and
Qiuhua Liu and
Jialin Jiang and
Yaobin Ou and
Yupei Zhao and
Xinqi Gong},
title = {Hierarchical combinatorial deep learning architecture for pancreas
segmentation of medical computed tomography cancer images},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {4},
pages = {119--127},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0572-z},
doi = {10.1186/S12918-018-0572-Z},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/FuWHLJOZG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GongDMWHWBGG18,
author = {Ping Gong and
Keri B. Donohue and
Anne M. Mayo and
Yuping Wang and
Huixiao Hong and
Mitchell S. Wilbanks and
Natalie D. Barker and
Xin Guan and
Kurt A. Gust},
title = {Comparative toxicogenomics of three insensitive munitions constituents
2, 4-dinitroanisole, nitroguanidine and nitrotriazolone in the soil
nematode Caenorhabditis elegans},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {7},
pages = {31--46},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0636-0},
doi = {10.1186/S12918-018-0636-0},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/GongDMWHWBGG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Gonzalez-Menendez18,
author = {V{\'{\i}}ctor Gonz{\'{a}}lez{-}Men{\'{e}}ndez and
Germ{\'{a}}n Mart{\'{\i}}nez and
Rachel Serrano and
Francisca Mu{\~{n}}oz and
Jes{\'{u}}s Mart{\'{\i}}n and
Olga Genilloud and
Jos{\'{e}} R. Tormo},
title = {Ultraviolet {(IUV)} and mass spectrometry {(IMS)} imaging for the
deconvolution of microbial interactions},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {5},
pages = {91--97},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0617-3},
doi = {10.1186/S12918-018-0617-3},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Gonzalez-Menendez18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GuoLHWYYFJD18,
author = {Mengjie Guo and
Sicheng Lu and
Hongming Huang and
Yaohui Wang and
Mary Qu Yang and
Ye Yang and
Zhimin Fan and
Bin Jiang and
Youping Deng},
title = {Increased {AURKA} promotes cell proliferation and predicts poor prognosis
in bladder cancer},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {7},
pages = {11--17},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0634-2},
doi = {10.1186/S12918-018-0634-2},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GuoLHWYYFJD18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GuyeuxAACS18,
author = {Christophe Guyeux and
Bashar Al{-}Nuaimi and
Bassam AlKindy and
Jean{-}Fran{\c{c}}ois Couchot and
Michel Salomon},
title = {On the reconstruction of the ancestral bacterial genomes in genus
Mycobacterium and Brucella},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {5},
pages = {99--121},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0618-2},
doi = {10.1186/S12918-018-0618-2},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GuyeuxAACS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HeJDZ18,
author = {Wenying He and
Cangzhi Jia and
Yucong Duan and
Quan Zou},
title = {70ProPred: a predictor for discovering sigma70 promoters based on
combining multiple features},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {4},
pages = {99--107},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0570-1},
doi = {10.1186/S12918-018-0570-1},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HeJDZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HeLCYLYG18,
author = {Guannan He and
Yanchun Liang and
Yan Chen and
William Yang and
Jun S. Liu and
Mary Qu Yang and
Renchu Guan},
title = {A hotspots analysis-relation discovery representation model for revealing
diabetes mellitus and obesity},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {7},
pages = {75--85},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0640-4},
doi = {10.1186/S12918-018-0640-4},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HeLCYLYG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HidalgoEAG18,
author = {Jos{\'{e}} F. Hidalgo and
Jose A. Egea and
Francisco De As{\'{\i}}s Guil Asensio and
Jos{\'{e}} M. Garc{\'{\i}}a},
title = {Improving the EFMs quality by augmenting their representativeness
in {LP} methods},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {5},
pages = {123--131},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0619-1},
doi = {10.1186/S12918-018-0619-1},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HidalgoEAG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HongPKCMKJY18,
author = {Yourae Hong and
Choa Park and
Nayoung Kim and
Juyeon Cho and
Sung Ung Moon and
Jongmin Kim and
Euna Jeong and
Sukjoon Yoon},
title = {QSurface: fast identification of surface expression markers in cancers},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {{S-2}},
pages = {1--8},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0541-6},
doi = {10.1186/S12918-018-0541-6},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HongPKCMKJY18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HuGZS18,
author = {Jialu Hu and
Yiqun Gao and
Yan Zheng and
Xuequn Shang},
title = {KF-finder: identification of key factors from host-microbial networks
in cervical cancer},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {4},
pages = {41--48},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0566-x},
doi = {10.1186/S12918-018-0566-X},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/HuGZS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HuZYGYZHSYYMCDH18,
author = {Ling Hu and
Rong Zhang and
Qiong Yuan and
Yinping Gao and
Mary Qu Yang and
Chunxiang Zhang and
Jiankun Huang and
Yufei Sun and
William Yang and
Jack Y. Yang and
Zhen{-}li Min and
Jing Cheng and
Youping Deng and
Xiamin Hu},
title = {The emerging role of microRNA-4487/6845-3p in Alzheimer's disease
pathologies is induced by A{\(\beta\)}25-35 triggered in {SH-SY5Y}
cell},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {7},
pages = {119:1--119:10},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0633-3},
doi = {10.1186/S12918-018-0633-3},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HuZYGYZHSYYMCDH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HuangLLTY18,
author = {Sing{-}Han Huang and
Yu{-}Shu Lo and
Yong{-}Chun Luo and
Yu{-}Yao Tseng and
Jinn{-}Moon Yang},
title = {A homologous mapping method for three-dimensional reconstruction of
protein networks reveals disease-associated mutations},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {{S-2}},
pages = {79--91},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0537-2},
doi = {10.1186/S12918-018-0537-2},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/HuangLLTY18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HungHPHTWC18,
author = {Kuo{-}Sheng Hung and
Chung{-}Chi Hsiao and
Tun{-}Wen Pai and
Chin{-}Hwa Hu and
Wen{-}Shyong Tzou and
Wen{-}Der Wang and
Yet{-}Ran Chen},
title = {Functional enrichment analysis based on long noncoding {RNA} associations},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {4},
pages = {109--118},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0571-0},
doi = {10.1186/S12918-018-0571-0},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HungHPHTWC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JeonKPLK18,
author = {Minji Jeon and
Sunkyu Kim and
Sungjoon Park and
Heewon Lee and
Jaewoo Kang},
title = {In silico drug combination discovery for personalized cancer therapy},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {{S-2}},
pages = {59--67},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0546-1},
doi = {10.1186/S12918-018-0546-1},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JeonKPLK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JiaoLW18,
author = {Jianfeng Jiao and
Min Luo and
Ruiqi Wang},
title = {Feedback regulation in a stem cell model with acute myeloid leukaemia},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {4},
pages = {75--83},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0561-2},
doi = {10.1186/S12918-018-0561-2},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JiaoLW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JungKKCKJ18,
author = {Inuk Jung and
Hyejin Kang and
Jang Uk Kim and
Hyeonsook Chang and
Sun Kim and
Woosuk Jung},
title = {The mRNA and miRNA transcriptomic landscape of Panax ginseng under
the high ambient temperature},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {{S-2}},
pages = {117--130},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0548-z},
doi = {10.1186/S12918-018-0548-Z},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JungKKCKJ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KhanAJLKCW18,
author = {Abbas Khan and
Arif Ali and
Muhammad Junaid and
Chang Liu and
Aman Chandra Kaushik and
William C. S. Cho and
Dong{-}Qing Wei},
title = {Identification of novel drug targets for diamond-blackfan anemia based
on {RPS19} gene mutation using protein-protein interaction network},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {4},
pages = {5--16},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0563-0},
doi = {10.1186/S12918-018-0563-0},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KhanAJLKCW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KwonLYP18,
author = {Min{-}Seok Kwon and
Sangseob Leem and
Joon Yoon and
Taesung Park},
title = {GxGrare: gene-gene interaction analysis method for rare variants from
high-throughput sequencing data},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {{S-2}},
pages = {21--31},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0543-4},
doi = {10.1186/S12918-018-0543-4},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KwonLYP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LegeayARD18,
author = {Marc Legeay and
S{\'{e}}bastien Aubourg and
Jean{-}Pierre Renou and
B{\'{e}}atrice Duval},
title = {Large scale study of anti-sense regulation by differential network
analysis},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {5},
pages = {27--41},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0613-7},
doi = {10.1186/S12918-018-0613-7},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LegeayARD18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LeiFWC18,
author = {Xiujuan Lei and
Ming Fang and
Fang{-}Xiang Wu and
Luonan Chen},
title = {Improved flower pollination algorithm for identifying essential proteins},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {4},
pages = {129--140},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0573-y},
doi = {10.1186/S12918-018-0573-Y},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LeiFWC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiHB18,
author = {Limin Li and
Xiao He and
Karsten M. Borgwardt},
title = {Multi-target drug repositioning by bipartite block-wise sparse multi-task
learning},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {4},
pages = {85--97},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0569-7},
doi = {10.1186/S12918-018-0569-7},
timestamp = {Wed, 25 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiHB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiYALCY18,
author = {Dan Li and
William Yang and
Carolyn Arthur and
Jun S. Liu and
Carolina Cruz{-}Niera and
Mary Qu Yang},
title = {Systems biology analysis reveals new insights into invasive lung cancer},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {7},
pages = {47--53},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0637-z},
doi = {10.1186/S12918-018-0637-Z},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiYALCY18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiuCHS18,
author = {Fei Liu and
Siyuan Chen and
Monika Heiner and
Hengjie Song},
title = {Modeling biological systems with uncertain kinetic data using fuzzy
continuous Petri nets},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {4},
pages = {63--74},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0568-8},
doi = {10.1186/S12918-018-0568-8},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/LiuCHS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiuCWZL18,
author = {Quanya Liu and
Peng Chen and
Bing Wang and
Jun Zhang and
Jinyan Li},
title = {Hot spot prediction in protein-protein interactions by an ensemble
system},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {9},
pages = {132},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0665-8},
doi = {10.1186/S12918-018-0665-8},
timestamp = {Sat, 12 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/LiuCWZL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiuHCLCCL18,
author = {Fang{-}Yu Liu and
Te{-}Cheng Hsu and
Patrick Choong and
Min{-}Hsuan Lin and
Yung{-}Jen Chuang and
Bor{-}Sen Chen and
Che Lin},
title = {Uncovering the regeneration strategies of zebrafish organs: a comprehensive
systems biology study on heart, cerebellum, fin, and retina regeneration},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {{S-2}},
pages = {33--46},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0544-3},
doi = {10.1186/S12918-018-0544-3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiuHCLCCL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LyuCJDFL18,
author = {Mengxuan Lyu and
Jiaxing Chen and
Yiqi Jiang and
Wei Dong and
Zhou Fang and
Shuai Cheng Li},
title = {KDiamend: a package for detecting key drivers in a molecular ecological
network of disease},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {89--99},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0531-8},
doi = {10.1186/S12918-018-0531-8},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/LyuCJDFL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MessinaFPRU18,
author = {Antonio Messina and
Antonino Fiannaca and
Laura La Paglia and
Massimo La Rosa and
Alfonso Urso},
title = {BioGraph: a web application and a graph database for querying and
analyzing bioinformatics resources},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {5},
pages = {75--89},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0616-4},
doi = {10.1186/S12918-018-0616-4},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MessinaFPRU18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MiannayMMG18,
author = {Bertrand Miannay and
St{\'{e}}phane Minvielle and
Florence Magrangeas and
Carito Guziolowski},
title = {Constraints on signaling network logic reveal functional subgraphs
on Multiple Myeloma {OMIC} data},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {3},
pages = {25--37},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0551-4},
doi = {10.1186/S12918-018-0551-4},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MiannayMMG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MishraLLKKL18,
author = {Pranjul Mishra and
Na{-}Rae Lee and
Meiyappan Lakshmanan and
Minsuk Kim and
Byung{-}Gee Kim and
Dong{-}Yup Lee},
title = {Genome-scale model-driven strain design for dicarboxylic acid production
in Yarrowia lipolytica},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {{S-2}},
pages = {9--20},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0542-5},
doi = {10.1186/S12918-018-0542-5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MishraLLKKL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MoriMYYK18,
author = {Hiroshi Mori and
Takayuki Maruyama and
Masahiro Yano and
Takuji Yamada and
Ken Kurokawa},
title = {{VITCOMIC2:} visualization tool for the phylogenetic composition of
microbial communities based on 16S rRNA gene amplicons and metagenomic
shotgun sequencing},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {{S-2}},
pages = {47--58},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0545-2},
doi = {10.1186/S12918-018-0545-2},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MoriMYYK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MoriNHAN18,
author = {Takuya Mori and
Hayliang Ngouv and
Morihiro Hayashida and
Tatsuya Akutsu and
Jose C. Nacher},
title = {ncRNA-disease association prediction based on sequence information
and tripartite network},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {41--51},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0527-4},
doi = {10.1186/S12918-018-0527-4},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MoriNHAN18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MukherjeeHBK18,
author = {Kingshuk Mukherjee and
Md Mahmudul Hasan and
Christina Boucher and
Tamer Kahveci},
title = {Counting motifs in dynamic networks},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {1--12},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0533-6},
doi = {10.1186/S12918-018-0533-6},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MukherjeeHBK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PapacekJP18,
author = {Step{\'{a}}n Pap{\'{a}}cek and
Jiri Jablonsky and
Karel Petera},
title = {Advanced integration of fluid dynamics and photosynthetic reaction
kinetics for microalgae culture systems},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {5},
pages = {93:1--93:12},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0611-9},
doi = {10.1186/S12918-018-0611-9},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PapacekJP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ParkKSHJJJK18,
author = {Sungjoon Park and
Jung Min Kim and
Won{-}Ho Shin and
Sung Won Han and
Minji Jeon and
Hyun Jin Jang and
Ik{-}Soon Jang and
Jaewoo Kang},
title = {{BTNET} : boosted tree based gene regulatory network inference algorithm
using time-course measurement data},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {{S-2}},
pages = {69--77},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0547-0},
doi = {10.1186/S12918-018-0547-0},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/ParkKSHJJJK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PengZHLLLS18,
author = {Jiajie Peng and
Xuanshuo Zhang and
Weiwei Hui and
Junya Lu and
Qianqian Li and
Shuhui Liu and
Xuequn Shang},
title = {Improving the measurement of semantic similarity by combining gene
ontology and co-functional network: a random walk based approach},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {{S-2}},
pages = {109--116},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0539-0},
doi = {10.1186/S12918-018-0539-0},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PengZHLLLS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/QiuJCC18,
author = {Yushan Qiu and
Hao Jiang and
Wai{-}Ki Ching and
Xiaoqing Cheng},
title = {Discovery of Boolean metabolic networks: integer linear programming
based approach},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {53--60},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0528-3},
doi = {10.1186/S12918-018-0528-3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/QiuJCC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RanjanCZ18,
author = {Bobby Ranjan and
Ket Hing Chong and
Jie Zheng},
title = {Composite mathematical modeling of calcium signaling behind neuronal
cell death in Alzheimer's disease},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {61--74},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0529-2},
doi = {10.1186/S12918-018-0529-2},
timestamp = {Thu, 02 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/RanjanCZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RucciGBGNP18,
author = {Enzo Rucci and
Carlos Garc{\'{\i}}a and
Guillermo Botella and
Armando De Giusti and
Marcelo R. Naiouf and
Manuel Prieto},
title = {{SWIFOLD:} Smith-Waterman implementation on {FPGA} with OpenCL for
long {DNA} sequences},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {5},
pages = {43--53},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0614-6},
doi = {10.1186/S12918-018-0614-6},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RucciGBGNP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ShenWSZCQWL18,
author = {Fangzhou Shen and
Xueting Wu and
Luoxi Shi and
Hang Zhang and
Yangmin Chen and
Xiaoquan Qi and
Zhuo Wang and
Xuan Li},
title = {Transcriptomic and metabolic flux analyses reveal shift of metabolic
patterns during rice grain development},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {4},
pages = {141--156},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0574-x},
doi = {10.1186/S12918-018-0574-X},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ShenWSZCQWL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TeraguchiK18,
author = {Shunsuke Teraguchi and
Yutaro Kumagai},
title = {Estimation of diffusion constants from single molecular measurement
without explicit tracking},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {25--39},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0526-5},
doi = {10.1186/S12918-018-0526-5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TeraguchiK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TianTCG18,
author = {Zhen Tian and
Zhixia Teng and
Shuang Cheng and
Maozu Guo},
title = {Computational drug repositioning using meta-path-based semantic network
analysis},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {9},
pages = {134},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0658-7},
doi = {10.1186/S12918-018-0658-7},
timestamp = {Wed, 11 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/TianTCG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/UrdaABFVCJ18,
author = {Daniel Urda and
Francisco Arag{\'{o}}n and
Roc{\'{\i}}o Bautista and
Leonardo Franco and
Francisco J. Veredas and
Manuel Gonzalo Claros and
Jos{\'{e}} Manuel Jerez},
title = {{BLASSO:} integration of biological knowledge into a regularized linear
model},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {5},
pages = {13--26},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0612-8},
doi = {10.1186/S12918-018-0612-8},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/UrdaABFVCJ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ValdesGRDYGRC18,
author = {Mar{\'{\i}}a Gabriela Vald{\'{e}}s and
Iv{\'{a}}n Galv{\'{a}}n{-}Femen{\'{\i}}a and
Vicent J. Ribas Ripoll and
Xavier Duran and
Jun Yokota and
Ricard Gavald{\`{a}} and
Xavier Rafael{-}Palou and
Rafael de Cid},
title = {Pipeline design to identify key features and classify the chemotherapy
response on lung cancer patients using large-scale genetic data},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {5},
pages = {55--74},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0615-5},
doi = {10.1186/S12918-018-0615-5},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/ValdesGRDYGRC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WangYLJCC18,
author = {Yan{-}Bin Wang and
Zhu{-}Hong You and
Xiao Li and
Tong{-}Hai Jiang and
Li Cheng and
Zhan{-}Heng Chen},
title = {Prediction of protein self-interactions using stacked long short-term
memory from protein sequences information},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {8},
pages = {129},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0647-x},
doi = {10.1186/S12918-018-0647-X},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/WangYLJCC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WangZC18,
author = {Yong Wang and
Xiang{-}Sun Zhang and
Luonan Chen},
title = {Integrating data- and model-driven strategies in systems biology},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {4},
pages = {38:1--38:3},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0562-1},
doi = {10.1186/S12918-018-0562-1},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WangZC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YangWYZCG18,
author = {Mary Qu Yang and
Sherman Morton Weissman and
William Yang and
Jialing Zhang and
Allon Canaan and
Renchu Guan},
title = {{MISC:} missing imputation for single-cell {RNA} sequencing data},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {7},
pages = {55--63},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0638-y},
doi = {10.1186/S12918-018-0638-Y},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YangWYZCG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YangXMKGZ18,
author = {Bei Yang and
Yaohui Xu and
Andrew S. Maxwell and
Wonryull Koh and
Ping Gong and
Chaoyang Zhang},
title = {{MICRAT:} a novel algorithm for inferring gene regulatory networks
using time series gene expression data},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {7},
pages = {19--29},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0635-1},
doi = {10.1186/S12918-018-0635-1},
timestamp = {Tue, 24 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YangXMKGZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YimYJL18,
author = {Soorin Yim and
Hasun Yu and
Dongjin Jang and
Doheon Lee},
title = {Annotating activation/inhibition relationships to protein-protein
interactions using gene ontology relations},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {111--122},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0535-4},
doi = {10.1186/S12918-018-0535-4},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YimYJL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YuMSHCDY18,
author = {Hui Yu and
Kui{-}Tao Mao and
Jian{-}Yu Shi and
Hua Huang and
Zhi Chen and
Kai Dong and
Siu{-}Ming Yiu},
title = {Predicting and understanding comprehensive drug-drug interactions
via semi-nonnegative matrix factorization},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {101--110},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0532-7},
doi = {10.1186/S12918-018-0532-7},
timestamp = {Thu, 27 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YuMSHCDY18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Zhang18,
author = {Shuqin Zhang},
title = {Comparisons of gene coexpression network modules in breast cancer
and ovarian cancer},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {1},
pages = {75--87},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0530-9},
doi = {10.1186/S12918-018-0530-9},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Zhang18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhangGZ18,
author = {Ke Zhang and
Wei Geng and
Shuqin Zhang},
title = {Network-based logistic regression integration method for biomarker
identification},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {9},
pages = {135},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0657-8},
doi = {10.1186/S12918-018-0657-8},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhangGZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhangSTXG18,
author = {Zehua Zhang and
Jian Song and
Jijun Tang and
Xinying Xu and
Fei Guo},
title = {Detecting complexes from edge-weighted {PPI} networks via genes expression
analysis},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {4},
pages = {29--40},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0565-y},
doi = {10.1186/S12918-018-0565-Y},
timestamp = {Tue, 12 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhangSTXG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZouAWY18,
author = {Xudong Zou and
Ke An and
Yun{-}Dong Wu and
Zhi{-}Qiang Ye},
title = {{PPI} network analyses of human {WD40} protein family systematically
reveal their tendency to assemble complexes and facilitate the complex
predictions},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {4},
pages = {49--62},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0567-9},
doi = {10.1186/S12918-018-0567-9},
timestamp = {Thu, 19 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/ZouAWY18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Hall-SwanCNC18,
title = {Detangling {PPI} networks to uncover functionally meaningful clusters},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {3},
pages = {11--23},
year = {2018},
note = {Withdrawn.},
url = {https://doi.org/10.1186/s12918-018-0550-5},
doi = {10.1186/S12918-018-0550-5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Hall-SwanCNC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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