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@article{DBLP:journals/bmcbi/AbbasiRK11, author = {Omid Abbasi and Ali Rostami and Ghader Karimian}, title = {Identification of exonic regions in {DNA} sequences using cross-correlation and noise suppression by discrete wavelet transform}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {430}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-430}, doi = {10.1186/1471-2105-12-430}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/AbbasiRK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/AdamusiakBKVAAKPS11, author = {Tomasz Adamusiak and Tony Burdett and Natalja Kurbatova and K. Joeri van der Velde and Niran Abeygunawardena and Despoina Antonakaki and Misha Kapushesky and Helen E. Parkinson and Morris A. Swertz}, title = {OntoCAT - simple ontology search and integration in Java, {R} and REST/JavaScript}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {218}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-218}, doi = {10.1186/1471-2105-12-218}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/AdamusiakBKVAAKPS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/AfzalHAC11, author = {Vackar Afzal and Jeffrey T.{-}J. Huang and Abdel Atrih and Daniel J. Crowther}, title = {PChopper: High Throughput Peptide Prediction For {MRM/SRM} Transition Design}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {338}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-338}, doi = {10.1186/1471-2105-12-338}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/AfzalHAC11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/AgarwalYK11, author = {Shashank Agarwal and Hong Yu and Isaac S. Kohane}, title = {BioNOT: {A} searchable database of biomedical negated sentences}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {420}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-420}, doi = {10.1186/1471-2105-12-420}, timestamp = {Sun, 22 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/AgarwalYK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/AgopianM11, author = {A. J. Agopian and Laura E. Mitchell}, title = {{MI-GWAS:} a {SAS} platform for the analysis of inherited and maternal genetic effects in genome-wide association studies using log-linear models}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {117}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-117}, doi = {10.1186/1471-2105-12-117}, timestamp = {Mon, 14 Nov 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/AgopianM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/AlexanderL11, author = {David H. Alexander and Kenneth Lange}, title = {Enhancements to the {ADMIXTURE} Algorithm for Individual Ancestry Estimation}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {246}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-246}, doi = {10.1186/1471-2105-12-246}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/AlexanderL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/AltayAMN11, author = {Gokmen Altay and Mohammad Asim and Florian Markowetz and David E. Neal}, title = {Differential {C3NET} reveals disease networks of direct physical interactions}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {296}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-296}, doi = {10.1186/1471-2105-12-296}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/AltayAMN11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/AlvarezW11, author = {Angel Alvarez and Peter J. Woolf}, title = {RegNetB: Predicting Relevant Regulator-Gene Relationships in Localized Prostate Tumor Samples}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {243}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-243}, doi = {10.1186/1471-2105-12-243}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/AlvarezW11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/AlvarssonASLW11, author = {Jonathan Alvarsson and Claes R. Andersson and Ola Spjuth and Rolf Larsson and Jarl E. S. Wikberg}, title = {Brunn: An open source laboratory information system for microplates with a graphical plate layout design process}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {179}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-179}, doi = {10.1186/1471-2105-12-179}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/AlvarssonASLW11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/AmbroiseBRGMG11, author = {J{\'{e}}r{\^{o}}me Ambroise and Bertrand Bearzatto and Annie Robert and Bernadette Govaerts and Beno{\^{\i}}t Macq and Jean{-}Luc Gala}, title = {Impact of the spotted microarray preprocessing method on fold-change compression and variance stability}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {413}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-413}, doi = {10.1186/1471-2105-12-413}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/AmbroiseBRGMG11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/AmigoSP11, author = {Jorge Amigo and Antonio Salas and Christopher Phillips}, title = {{ENGINES:} exploring single nucleotide variation in entire human genomes}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {105}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-105}, doi = {10.1186/1471-2105-12-105}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/AmigoSP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/AminSYAMAML11, author = {Samir B. Amin and Parantu K. Shah and Aimin Yan and Sophia Adamia and St{\'{e}}phane Minvielle and Herve Avet{-}Loiseau and Nikhil C. Munshi and Cheng Li}, title = {The dChip survival analysis module for microarray data}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {72}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-72}, doi = {10.1186/1471-2105-12-72}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/AminSYAMAML11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Amos-BinksPPSGGGD11, author = {Adam Amos{-}Binks and Catalin Patulea and Sylvain Pitre and Andrew Schoenrock and Yuan Gui and James R. Green and Ashkan Golshani and Frank K. H. A. Dehne}, title = {Binding Site Prediction for Protein-Protein Interactions and Novel Motif Discovery using Re-occurring Polypeptide Sequences}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {225}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-225}, doi = {10.1186/1471-2105-12-225}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/Amos-BinksPPSGGGD11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/AndersonSM11, author = {Catherine L. Anderson and Cory L. Strope and Etsuko N. Moriyama}, title = {SuiteMSA: Visual Tools for Multiple Sequence Alignment Comparison and Molecular Sequence Simulation}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {184}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-184}, doi = {10.1186/1471-2105-12-184}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/AndersonSM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/AngiuoliHST11, author = {Samuel V. Angiuoli and Julie C. Dunning Hotopp and Steven L. Salzberg and Herv{\'{e}} Tettelin}, title = {Improving pan-genome annotation using whole genome multiple alignment}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {272}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-272}, doi = {10.1186/1471-2105-12-272}, timestamp = {Fri, 29 Jul 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/AngiuoliHST11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/AngiuoliMGGVRAWWF11, author = {Samuel V. Angiuoli and Malcolm Matalka and Aaron Gussman and Kevin Galens and Mahesh Vangala and David R. Riley and Cesar Arze and James Robert White and Owen White and W. Florian Fricke}, title = {CloVR: {A} virtual machine for automated and portable sequence analysis from the desktop using cloud computing}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {356}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-356}, doi = {10.1186/1471-2105-12-356}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/AngiuoliMGGVRAWWF11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/AntoniwBBURH11, author = {John Antoniw and Andrew M. Beacham and Thomas K. Baldwin and Martin Urban and Jason J. Rudd and Kim E. Hammond{-}Kosack}, title = {OmniMapFree: {A} unified tool to visualise and explore sequenced genomes}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {447}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-447}, doi = {10.1186/1471-2105-12-447}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/AntoniwBBURH11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ArellanoAABCGRA11, author = {Gustavo Arellano and Juli{\'{a}}n Argil and Eugenio Azpeitia and Mariana Ben{\'{\i}}tez and Miguel Carrillo and Pedro Arturo G{\'{o}}ngora and David A. Rosenblueth and Elena R. {\'{A}}lvarez{-}Buylla}, title = {"Antelope": a hybrid-logic model checker for branching-time Boolean {GRN} analysis}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {490}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-490}, doi = {10.1186/1471-2105-12-490}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ArellanoAABCGRA11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/AvihooCB11, author = {Assaf Avihoo and Alexander Churkin and Danny Barash}, title = {RNAexinv: An Extended Inverse {RNA} Folding from Shape and Physical Attributes to Sequences}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {319}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-319}, doi = {10.1186/1471-2105-12-319}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/AvihooCB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/AxelssonSHBHF11, author = {Elin Axelsson and Thomas Sandmann and Thomas Horn and Michael Boutros and Wolfgang Huber and Bernd Fischer}, title = {Extracting quantitative genetic interaction phenotypes from matrix combinatorial RNAi}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {342}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-342}, doi = {10.1186/1471-2105-12-342}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/AxelssonSHBHF11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/AydinSBN11, author = {Zafer Aydin and Ajit P. Singh and Jeff A. Bilmes and William Stafford Noble}, title = {Learning sparse models for a dynamic Bayesian network classifier of protein secondary structure}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {154}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-154}, doi = {10.1186/1471-2105-12-154}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/AydinSBN11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BaeS11, author = {Se{-}Eun Bae and Hyeon Seok Son}, title = {Classification of viral zoonosis through receptor pattern analysis}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {96}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-96}, doi = {10.1186/1471-2105-12-96}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BaeS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BaghdadiZSSBHL11, author = {Leila Baghdadi and Mojdeh Zamyadi and John G. Sled and J{\"{u}}rgen E. Schneider and Shuomo Bhattacharya and R. Mark Henkelman and Jason P. Lerch}, title = {Semi-Automatic Segmentation of Multiple Mouse Embryos in {MR} Images}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {237}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-237}, doi = {10.1186/1471-2105-12-237}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BaghdadiZSSBHL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Barbosa-SilvaFDSOA11, author = {Adriano Barbosa{-}Silva and Jean{-}Fred Fontaine and Elisa R. Donnard and Fernanda Stussi and Jos{\'{e}} Miguel Ortega and Miguel A. Andrade{-}Navarro}, title = {PESCADOR, a web-based tool to assist text-mining of biointeractions extracted from PubMed queries}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {435}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-435}, doi = {10.1186/1471-2105-12-435}, timestamp = {Wed, 14 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/Barbosa-SilvaFDSOA11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BarriusoVM11, author = {Jorge Barriuso and Jos{\'{e}} R. Valverde and Rafael P. Mellado}, title = {Estimation of bacterial diversity using next generation sequencing of 16S rDNA: a comparison of different workflows}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {473}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-473}, doi = {10.1186/1471-2105-12-473}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BarriusoVM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BarsnesVCHSBM11, author = {Harald Barsnes and Marc Vaudel and Niklaas Colaert and Kenny Helsens and Albert Sickmann and Frode S. Berven and Lennart Martens}, title = {compomics-utilities: an open-source Java library for computational proteomics}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {70}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-70}, doi = {10.1186/1471-2105-12-70}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/BarsnesVCHSBM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BasuBB11, author = {Sankar Basu and Dhananjay Bhattacharyya and Rahul Banerjee}, title = {Mapping the distribution of packing topologies within protein interiors shows predominant preference for specific packing motifs}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {195}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-195}, doi = {10.1186/1471-2105-12-195}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BasuBB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BasuSH11, author = {Malay Kumar Basu and Jeremy D. Selengut and Daniel H. Haft}, title = {ProPhylo: Partial Phylogenetic Profiling to guide protein family construction and assignment of biological process}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {434}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-434}, doi = {10.1186/1471-2105-12-434}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BasuSH11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BauchABEEGKPQRBMAR11, author = {Angela Bauch and Izabela Adamczyk and Piotr Buczek and Franz{-}Josef Elmer and Kaloyan Enimanev and Pawel Glyzewski and Manuel Kohler and Tomasz Pylak and Andreas Quandt and Chandrasekhar Ramakrishnan and Christian Beisel and Lars Malmstr{\"{o}}m and Ruedi Aebersold and Bernd Rinn}, title = {openBIS: a flexible framework for managing and analyzing complex data in biology research}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {468}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-468}, doi = {10.1186/1471-2105-12-468}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/BauchABEEGKPQRBMAR11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BauerKSTTCDBARSC11, author = {Chris Bauer and Frank Kleinjung and Celia J. Smith and Mark W. Towers and Ali Tiss and Alexandra Chadt and Tanja Dreja and Dieter Beule and Hadi Al{-}Hasani and Knut Reinert and Johannes Schuchhardt and Rainer Cramer}, title = {Biomarker Discovery and Redundancy Reduction towards Classification using a Multi-factorial {MALDI-TOF} {MS} {T2DM} Mouse Model Dataset}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {140}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-140}, doi = {10.1186/1471-2105-12-140}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BauerKSTTCDBARSC11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BayaG11, author = {Ariel E. Bay{\'{a}} and Pablo M. Granitto}, title = {Clustering gene expression data with a penalized graph-based metric}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {2}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-2}, doi = {10.1186/1471-2105-12-2}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BayaG11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BechecPVMZSATWLF11, author = {Antony Le B{\'{e}}chec and Elodie Portales{-}Casamar and Guillaume Vetter and Mich{\`{e}}le Moes and Pierre{-}Joachim Zindy and Anne Saumet and David J. Arenillas and Charles Theillet and Wyeth W. Wasserman and Charles{-}Henri Lecellier and Evelyne Friederich}, title = {MIR@NT@N: a framework integrating transcription factors, microRNAs and their targets to identify sub-network motifs in a meta-regulation network model}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {67}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-67}, doi = {10.1186/1471-2105-12-67}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BechecPVMZSATWLF11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BeckerTLB11, author = {Natalia Becker and Grischa Toedt and Peter Lichter and Axel Benner}, title = {Elastic {SCAD} as a novel penalization method for {SVM} classification tasks in high-dimensional data}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {138}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-138}, doi = {10.1186/1471-2105-12-138}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BeckerTLB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BenderHHWKB11, author = {Christian Bender and Silvia von der Heyde and Frauke Henjes and Stefan Wiemann and Ulrike Korf and Tim Bei{\ss}barth}, title = {Inferring signalling networks from longitudinal data using sampling based approaches in the R-package 'ddepn'}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {291}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-291}, doi = {10.1186/1471-2105-12-291}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BenderHHWKB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BergemannW11, author = {Tracy L. Bergemann and Jason Wilson}, title = {Proportion statistics to detect differentially expressed genes: a comparison with log-ratio statistics}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {228}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-228}, doi = {10.1186/1471-2105-12-228}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BergemannW11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BergerC11, author = {Fabrice Berger and Enrico Carlon}, title = {From hybridization theory to microarray data analysis: performance evaluation}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {464}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-464}, doi = {10.1186/1471-2105-12-464}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BergerC11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BernardesCZ11, author = {Juliana S. Bernardes and Alessandra Carbone and Gerson Zaverucha}, title = {A discriminative method for family-based protein remote homology detection that combines inductive logic programming and propositional models}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {83}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-83}, doi = {10.1186/1471-2105-12-83}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BernardesCZ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BickertonHB11, author = {George R. Bickerton and Alicia P. Higueruelo and Tom L. Blundell}, title = {Comprehensive, atomic-level characterization of structurally characterized protein-protein interactions: the {PICCOLO} database}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {313}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-313}, doi = {10.1186/1471-2105-12-313}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BickertonHB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BieriG11, author = {Michael Bieri and Paul R. Gooley}, title = {Automated {NMR} relaxation dispersion data analysis using {NESSY}}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {421}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-421}, doi = {10.1186/1471-2105-12-421}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BieriG11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BinR11, author = {Riccardo De Bin and Davide Risso}, title = {A novel approach to the clustering of microarray data via nonparametric density estimation}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {49}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-49}, doi = {10.1186/1471-2105-12-49}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BinR11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BlanchetSASAASTWLB11, author = {Lionel Blanchet and Agnieszka Smolinska and Amos Attali and Marcel P. Stoop and Kirsten A. M. Ampt and Hans van Aken and Ernst Suidgeest and Tinka Tuinstra and Sybren S. Wijmenga and Theo Luider and Lutgarde M. C. Buydens}, title = {Fusion of metabolomics and proteomics data for biomarkers discovery: case study on the experimental autoimmune encephalomyelitis}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {254}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-254}, doi = {10.1186/1471-2105-12-254}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BlanchetSASAASTWLB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BlancoMMR11, author = {Roberto Blanco and Elvira Mayordomo and Julio Montoya and Eduardo Ruiz{-}Pesini}, title = {Rebooting the human mitochondrial phylogeny: an automated and scalable methodology with expert knowledge}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {174}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-174}, doi = {10.1186/1471-2105-12-174}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BlancoMMR11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BlazewiczFKPW11, author = {Jacek Blazewicz and Wojciech Frohmberg and Michal Kierzynka and Erwin Pesch and Pawel Wojciechowski}, title = {Protein alignment algorithms with an efficient backtracking routine on multiple GPUs}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {181}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-181}, doi = {10.1186/1471-2105-12-181}, timestamp = {Tue, 21 Sep 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/BlazewiczFKPW11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BoekerTHSS11, author = {Martin Boeker and Ilinca Tudose and Janna Hastings and Daniel Schober and Stefan Schulz}, title = {Unintended consequences of existential quantifications in biomedical ontologies}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {456}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-456}, doi = {10.1186/1471-2105-12-456}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BoekerTHSS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BolenUK11, author = {Christopher R. Bolen and Mohamed Uduman and Steven H. Kleinstein}, title = {Cell Subset Prediction for Blood Genomic Studies}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {258}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-258}, doi = {10.1186/1471-2105-12-258}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BolenUK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BontempiHDSQ11, author = {Gianluca Bontempi and Benjamin Haibe{-}Kains and Christine Desmedt and Christos P. Sotiriou and John Quackenbush}, title = {Multiple-input multiple-output causal strategies for gene selection}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {458}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-458}, doi = {10.1186/1471-2105-12-458}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/BontempiHDSQ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BorghtCLHKBVV11, author = {Koen Van der Borght and Elke Van Craenenbroeck and Pierre Lecocq and Margriet Van Houtte and Barbara Van Kerckhove and Lee Bacheler and Geert Verbeke and Herman van Vlijmen}, title = {Cross-validated stepwise regression for identification of novel non-nucleoside reverse transcriptase inhibitor resistance associated mutations}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {386}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-386}, doi = {10.1186/1471-2105-12-386}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BorghtCLHKBVV11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BorileLFSR11, author = {Claudio Borile and Mathieu Labarre and Silvio Franz and Christophe Sola and Guislaine Refregier}, title = {Using affinity propagation for identifying subspecies among clonal organisms: lessons from M. tuberculosis}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {224}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-224}, doi = {10.1186/1471-2105-12-224}, timestamp = {Sun, 12 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BorileLFSR11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BraunLPR11, author = {Rosemary Braun and Gregory Leibon and Scott D. Pauls and Daniel N. Rockmore}, title = {Partition decoupling for multi-gene analysis of gene expression profiling data}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {497}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-497}, doi = {10.1186/1471-2105-12-497}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BraunLPR11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BristowHD11, author = {Franklin Bristow and Runtao He and Gary H. Van Domselaar}, title = {GOmotif: {A} web server for investigating the biological role of protein sequence motifs}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {379}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-379}, doi = {10.1186/1471-2105-12-379}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BristowHD11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BrownSJD11, author = {Justin R. Brown and Phillip Stafford and Stephen A. Johnston and Valentin Dinu}, title = {Statistical Methods for Analyzing Immunosignatures}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {349}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-349}, doi = {10.1186/1471-2105-12-349}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BrownSJD11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BrumbaughKGP11, author = {Christopher D. Brumbaugh and Hyunsung John Kim and Mario Giovacchini and Nader Pourmand}, title = {NanoStriDE: normalization and differential expression analysis of NanoString nCounter data}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {479}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-479}, doi = {10.1186/1471-2105-12-479}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BrumbaughKGP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BrusniakKCCRPKRDCMA11, author = {Mi{-}Youn K. Brusniak and Sung{-}Tat Kwok and Mark Christiansen and David S. Campbell and Lukas Reiter and Paola Picotti and Ulrike Kusebauch and Hector Ramos and Eric W. Deutsch and Jingchun Chen and Robert L. Moritz and Ruedi Aebersold}, title = {{ATAQS:} {A} computational software tool for high throughput transition optimization and validation for selected reaction monitoring mass spectrometry}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {78}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-78}, doi = {10.1186/1471-2105-12-78}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BrusniakKCCRPKRDCMA11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BultDENARRDSBW11, author = {Carol J. Bult and Harold J. Drabkin and Alexei V. Evsikov and Darren A. Natale and Cecilia N. Arighi and Natalia V. Roberts and Alan Ruttenberg and Peter D'Eustachio and Barry Smith and Judith A. Blake and Cathy H. Wu}, title = {The Representation of Protein Complexes in the Protein Ontology {(PRO)}}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {371}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-371}, doi = {10.1186/1471-2105-12-371}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/BultDENARRDSBW11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BuskeHPRN11, author = {Orion J. Buske and Michael M. Hoffman and Nadia Ponts and Karine G. Le Roch and William Stafford Noble}, title = {Exploratory analysis of genomic segmentations with Segtools}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {415}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-415}, doi = {10.1186/1471-2105-12-415}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/BuskeHPRN11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/CaceresAVG11, author = {Alejandro C{\'{a}}ceres and Llu{\'{\i}}s Armengol and Sergi Villatoro and Juan R. Gonz{\'{a}}lez}, title = {MLPAstats: An {R} {GUI} package for the integrated analysis of copy number alterations using {MLPA} data}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {147}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-147}, doi = {10.1186/1471-2105-12-147}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/CaceresAVG11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/CaiHX11, author = {Xiaodong Cai and Anhui Huang and Shizhong Xu}, title = {Fast Empirical Bayesian {LASSO} for Multiple Quantitative Trait Locus Mapping}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {211}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-211}, doi = {10.1186/1471-2105-12-211}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/CaiHX11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/CaiYTC11, author = {Bin Cai and Xiaohan Yang and Gerald A. Tuskan and (Max) Zong{-}Ming Cheng}, title = {MicroSyn: {A} user friendly tool for detection of microsynteny in a gene family}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {79}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-79}, doi = {10.1186/1471-2105-12-79}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/CaiYTC11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/CaoBB11, author = {Kim{-}Anh L{\^{e}} Cao and Simon Boitard and Philippe Besse}, title = {Sparse {PLS} Discriminant Analysis: biologically relevant feature selection and graphical displays for multiclass problems}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {253}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-253}, doi = {10.1186/1471-2105-12-253}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/CaoBB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/CarreiraCPRRFL11, author = {Rafael Carreira and S{\'{o}}nia Carneiro and Rui Pereira and Miguel Rocha and Isabel Rocha and Eug{\'{e}}nio C. Ferreira and An{\'{a}}lia Louren{\c{c}}o}, title = {Semantic annotation of biological concepts interplaying microbial cellular responses}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {460}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-460}, doi = {10.1186/1471-2105-12-460}, timestamp = {Wed, 12 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/CarreiraCPRRFL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/CeruttiBGG11, author = {Francesco Cerutti and Luigi Bertolotti and Tony L. Goldberg and Mario Giacobini}, title = {Taxon ordering in phylogenetic trees: a workbench test}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {58}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-58}, doi = {10.1186/1471-2105-12-58}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/CeruttiBGG11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChangFHCBGSP11, author = {Hang Chang and Gerald Fontenay and Ju Han and Ge Cong and Frederick L. Baehner and Joe W. Gray and Paul T. Spellman and Bahram Parvin}, title = {Morphometic analysis of {TCGA} glioblastoma multiforme}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {484}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-484}, doi = {10.1186/1471-2105-12-484}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ChangFHCBGSP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChangGLBVN11, author = {Jeffrey T. Chang and Michael L. Gatza and Joseph E. Lucas and William T. Barry and Peyton Vaughn and Joseph Nevins}, title = {{SIGNATURE:} {A} workbench for gene expression signature analysis}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {443}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-443}, doi = {10.1186/1471-2105-12-443}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ChangGLBVN11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChangLS11, author = {Qin Chang and Yihui Luan and Fengzhu Sun}, title = {Variance adjusted weighted UniFrac: a powerful beta diversity measure for comparing communities based on phylogeny}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {118}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-118}, doi = {10.1186/1471-2105-12-118}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ChangLS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChangSHRNCBS11, author = {Wenling E. Chang and Keri Sarver and Brandon W. Higgs and Timothy D. Read and Nichole M. E. Nolan and Carol E. Chapman and Kimberly A. Bishop{-}Lilly and Shanmuga Sozhamannan}, title = {PheMaDB: {A} solution for storage, retrieval, and analysis of high throughput phenotype data}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {109}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-109}, doi = {10.1186/1471-2105-12-109}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ChangSHRNCBS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChenB11, author = {Hanbo Chen and Paul C. Boutros}, title = {VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in {R}}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {35}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-35}, doi = {10.1186/1471-2105-12-35}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ChenB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChenCYWWTS11, author = {Ruoying Chen and Wenjing Chen and Sixiao Yang and Di Wu and Yong Wang and Yingjie Tian and Yong Shi}, title = {Rigorous assessment and integration of the sequence and structure based features to predict hot spots}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {311}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-311}, doi = {10.1186/1471-2105-12-311}, timestamp = {Mon, 08 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ChenCYWWTS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChenRL11, author = {Shu{-}Chuan Chen and Michael S. Rosenberg and Bruce G. Lindsay}, title = {MixtureTree: a program for constructing phylogeny}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {111}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-111}, doi = {10.1186/1471-2105-12-111}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ChenRL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChenSLGHM11, author = {Wen Han Chen and Ping Ping Sun and Yang Lu and William W. Guo and Yan Xin Huang and Zhi Qiang Ma}, title = {MimoPro: a more efficient Web-based tool for epitope prediction using phage display libraries}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {199}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-199}, doi = {10.1186/1471-2105-12-199}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ChenSLGHM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChengCASC11, author = {Lu Cheng and Thomas R. Connor and David M. Aanensen and Brian G. Spratt and Jukka Corander}, title = {Bayesian semi-supervised classification of bacterial samples using {MLST} databases}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {302}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-302}, doi = {10.1186/1471-2105-12-302}, timestamp = {Mon, 03 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ChengCASC11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChengZZLZ11, author = {Feng Cheng and Xianglong Zhang and Yinan Zhang and Chaohua Li and Changqing Zeng}, title = {Haplo2Ped: a tool using haplotypes as markers for linkage analysis}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {350}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-350}, doi = {10.1186/1471-2105-12-350}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ChengZZLZ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChepelevRKLDB11, author = {Leonid L. Chepelev and Alexandre Riazanov and Alexandre Kouznetsov and Hong Sang Low and Michel Dumontier and Christopher J. O. Baker}, title = {Prototype Semantic Infrastructure for Automated Small Molecule Classification and Annotation in Lipidomics}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {303}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-303}, doi = {10.1186/1471-2105-12-303}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ChepelevRKLDB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChiH11, author = {Xiaoxiao Chi and Jingyu Hou}, title = {An Iterative Approach of Protein Function Prediction}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {437}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-437}, doi = {10.1186/1471-2105-12-437}, timestamp = {Wed, 29 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ChiH11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChiangCQSC11, author = {Gen{-}Tao Chiang and Peter Clapham and Guoying Qi and Kevin Sale and Guy Coates}, title = {Implementing a genomic data management system using iRODS in Wellcome Trust Sanger Institute}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {361}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-361}, doi = {10.1186/1471-2105-12-361}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ChiangCQSC11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChipmanS11, author = {Kyle C. Chipman and Ambuj K. Singh}, title = {Using Stochastic Causal Trees to Augment Bayesian Networks for Modeling eQTL Datasets}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {7}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-7}, doi = {10.1186/1471-2105-12-7}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ChipmanS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChishamWLSP11, author = {Brandon Chisham and Ben Wright and Trung Le and Tran Cao Son and Enrico Pontelli}, title = {CDAO-Store: Ontology-driven Data Integration for Phylogenetic Analysis}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {98}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-98}, doi = {10.1186/1471-2105-12-98}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ChishamWLSP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChitalePK11, author = {Meghana Chitale and Shriphani Palakodety and Daisuke Kihara}, title = {Quantification of Protein Group Coherence and Pathway Assignment Using Functional Association}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {373}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-373}, doi = {10.1186/1471-2105-12-373}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ChitalePK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChungSM11, author = {Ren{-}Hua Chung and Michael A. Schmidt and Eden R. Martin}, title = {{CAPL:} an efficient association software package using family and case-control data and accounting for population stratification}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {201}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-201}, doi = {10.1186/1471-2105-12-201}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ChungSM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/CieslikM11, author = {Marcin Cieslik and Cameron Mura}, title = {A lightweight, flow-based toolkit for parallel and distributed bioinformatics pipelines}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {61}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-61}, doi = {10.1186/1471-2105-12-61}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/CieslikM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ClarkV11, author = {Sangaalofa T. Clark and Wynand S. Verwoerd}, title = {A systems approach to identifying correlated gene targets for the loss of colour pigmentation in plants}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {343}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-343}, doi = {10.1186/1471-2105-12-343}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ClarkV11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ClementeJV11, author = {Jos{\'{e}} Carlos Clemente and Jesper Jansson and Gabriel Valiente}, title = {Flexible taxonomic assignment of ambiguous sequencing reads}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {8}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-8}, doi = {10.1186/1471-2105-12-8}, timestamp = {Tue, 17 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ClementeJV11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/CohenGEB11, author = {Raphael Cohen and Avitan Gefen and Michael Elhadad and Ohad S. Birk}, title = {Clinical Synopsis Search in {OMIM}}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {65}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-65}, doi = {10.1186/1471-2105-12-65}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/CohenGEB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/CookeSKDW11, author = {Emma J. Cooke and Richard S. Savage and Paul D. W. Kirk and Robert Darkins and David L. Wild}, title = {Bayesian hierarchical clustering for microarray time series data with replicates and outlier measurements}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {399}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-399}, doi = {10.1186/1471-2105-12-399}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/CookeSKDW11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/CorreaG11, author = {Elon Santos Correa and Royston Goodacre}, title = {A genetic algorithm-Bayesian network approach for the analysis of metabolomics and spectroscopic data: application to the rapid detection of Bacillus spores and identification of Bacillus species}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {33}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-33}, doi = {10.1186/1471-2105-12-33}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/CorreaG11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/CradickAIBM11, author = {Thomas J. Cradick and Giovanna Ambrosini and Christian Iseli and Philipp Bucher and Anton P. McCaffrey}, title = {ZFN-Site searches genomes for zinc finger nuclease target sites and off-target sites}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {152}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-152}, doi = {10.1186/1471-2105-12-152}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/CradickAIBM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/CresawnBDJHH11, author = {Steven G. Cresawn and Matt Bogel and Nathan Day and Deborah Jacobs{-}Sera and Roger W. Hendrix and Graham F. Hatfull}, title = {Phamerator: a bioinformatic tool for comparative bacteriophage genomics}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {395}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-395}, doi = {10.1186/1471-2105-12-395}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/CresawnBDJHH11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/CuiDJW11, author = {Jike Cui and Todd F. DeLuca and Jae{-}Yoon Jung and Dennis P. Wall}, title = {Phylogenetically informed logic relationships improve detection of biological network organization}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {476}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-476}, doi = {10.1186/1471-2105-12-476}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/CuiDJW11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/CuiMCZ11, author = {Jian Cui and Xuepo Ma and Long Chen and Jianqiu Zhang}, title = {{SCFIA:} {A} Statistical Corresponding Feature Identification Algorithm for {LC/MS}}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {439}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-439}, doi = {10.1186/1471-2105-12-439}, timestamp = {Mon, 17 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/CuiMCZ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/CuleVI11, author = {Erika Cule and Paolo Vineis and Maria De Iorio}, title = {Significance testing in ridge regression for genetic data}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {372}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-372}, doi = {10.1186/1471-2105-12-372}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/CuleVI11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DabdoubRJ11, author = {Shareef Dabdoub and William C. Ray and Sheryl S. Justice}, title = {{FIND:} {A} new software tool and development platform for enhanced multicolor flow analysis}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {145}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-145}, doi = {10.1186/1471-2105-12-145}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/DabdoubRJ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DailyPRXB11, author = {Kenneth Daily and Vishal R. Patel and Paul Rigor and Xiaohui Xie and Pierre Baldi}, title = {MotifMap: integrative genome-wide maps of regulatory motif sites for model species}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {495}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-495}, doi = {10.1186/1471-2105-12-495}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/DailyPRXB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DanilukL11, author = {Pawel Daniluk and Bogdan Lesyng}, title = {A novel method to compare protein structures using local descriptors}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {344}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-344}, doi = {10.1186/1471-2105-12-344}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/DanilukL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DarbyJWH11, author = {Brian J. Darby and Kenneth L. Jones and David Wheeler and Michael A. Herman}, title = {Normalization and centering of array-based heterologous genome hybridization between species of unknown or unequal divergence}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {183}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-183}, doi = {10.1186/1471-2105-12-183}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/DarbyJWH11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DavidMLMB11, author = {L{\'{a}}szl{\'{o}} D{\'{a}}vid and Sayed{-}Amir Marashi and Abdelhalim Larhlimi and Bettina Mieth and Alexander Bockmayr}, title = {{FFCA:} a feasibility-based method for flux coupling analysis of metabolic networks}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {236}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-236}, doi = {10.1186/1471-2105-12-236}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/DavidMLMB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DayMCLCHKKLM11, author = {Roger S. Day and Kevin K. McDade and Uma R. Chandran and Alex Lisovich and Thomas P. Conrads and Brian L. Hood and Vs Kumar Kolli and David Kirchner and Tracy Litzi and G. Larry Maxwell}, title = {Identifier mapping performance for integrating transcriptomics and proteomics experimental results}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {213}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-213}, doi = {10.1186/1471-2105-12-213}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/DayMCLCHKKLM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Defoin-PlatelHLPHRS11, author = {Michael Defoin{-}Platel and Matthew Morritt Hindle and Artem Lysenko and Stephen J. Powers and Dimah Z. Habash and Christopher J. Rawlings and Mansoor A. S. Saqi}, title = {{AIGO:} Towards a unified framework for the Analysis and the Inter-comparison of {GO} functional annotations}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {431}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-431}, doi = {10.1186/1471-2105-12-431}, timestamp = {Tue, 21 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Defoin-PlatelHLPHRS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DehouckKGR11, author = {Yves Dehouck and Jean Marc Kwasigroch and Dimitri Gilis and Marianne Rooman}, title = {PoPMuSiC 2.1 : a web server for the estimation of protein stability changes upon mutation and sequence optimality}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {151}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-151}, doi = {10.1186/1471-2105-12-151}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/DehouckKGR11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Demir-KavukKAK11, author = {Ozgur Demir{-}Kavuk and Mayumi Kamada and Tatsuya Akutsu and Ernst{-}Walter Knapp}, title = {Prediction using step-wise L1, {L2} regularization and feature selection for small data sets with large number of features}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {412}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-412}, doi = {10.1186/1471-2105-12-412}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/Demir-KavukKAK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Deng11, author = {Xutao Deng}, title = {SeqGene: a comprehensive software solution for mining exome- and transcriptome- sequencing data}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {267}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-267}, doi = {10.1186/1471-2105-12-267}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Deng11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DengC11, author = {Xin Deng and Jianlin Cheng}, title = {MSACompro: protein multiple sequence alignment using predicted secondary structure, solvent accessibility, and residue-residue contacts}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {472}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-472}, doi = {10.1186/1471-2105-12-472}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/DengC11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DenielouSBV11, author = {Yves{-}Pol Deni{\'{e}}lou and Marie{-}France Sagot and Fr{\'{e}}d{\'{e}}ric Boyer and Alain Viari}, title = {Bacterial syntenies: an exact approach with gene quorum}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {193}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-193}, doi = {10.1186/1471-2105-12-193}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/DenielouSBV11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DereeperNCBDPRT11, author = {Alexis Dereeper and St{\'{e}}phane Nicolas and Loic Le Cunff and Roberto Bacilieri and Agnes Doligez and Jean{-}Pierre Peros and Manuel Ruiz and Patrice This}, title = {SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine diversity projects}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {134}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-134}, doi = {10.1186/1471-2105-12-134}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/DereeperNCBDPRT11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DeunWBAM11, author = {Katrijn Van Deun and Tom F. Wilderjans and Robert A. van den Berg and Anestis Antoniadis and Iven Van Mechelen}, title = {A flexible framework for sparse simultaneous component based data integration}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {448}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-448}, doi = {10.1186/1471-2105-12-448}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/DeunWBAM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DeusCSMMLFA11, author = {Helena F. Deus and Miria C. Correa and Romesh Stanislaus and Maria Miragaia and Wolfgang Maass and Herm{\'{\i}}nia de Lencastre and Ronan Fox and Jonas S. Almeida}, title = {{S3QL:} {A} distributed domain specific language for controlled semantic integration of life sciences data}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {285}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-285}, doi = {10.1186/1471-2105-12-285}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/DeusCSMMLFA11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Diaz-DiazA11, author = {Norberto D{\'{\i}}az{-}D{\'{\i}}az and Jes{\'{u}}s S. Aguilar{-}Ruiz}, title = {GO-based Functional Dissimilarity of Gene Sets}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {360}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-360}, doi = {10.1186/1471-2105-12-360}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Diaz-DiazA11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DingZG11, author = {Jiandong Ding and Shuigeng Zhou and Jihong Guan}, title = {miRFam: an effective automatic miRNA classification method based on n-grams and a multiclass {SVM}}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {216}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-216}, doi = {10.1186/1471-2105-12-216}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/DingZG11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DinhRK11, author = {Hieu Dinh and Sanguthevar Rajasekaran and Vamsi Kundeti}, title = {{PMS5:} an efficient exact algorithm for the (l, d)-motif finding problem}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {410}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-410}, doi = {10.1186/1471-2105-12-410}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/DinhRK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DinovTMPLZEPGKCHAKT11, author = {Ivo D. Dinov and Federica Torri and Fabio Macciardi and Petros Petrosyan and Zhizhong Liu and Alen Zamanyan and Paul R. Eggert and Jonathan Pierce and Alex Genco and James A. Knowles and Andrew P. Clark and John D. Van Horn and Joseph Ames and Carl Kesselman and Arthur W. Toga}, title = {Applications of the Pipeline Environment for Visual Informatics and Genomics Computations}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {304}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-304}, doi = {10.1186/1471-2105-12-304}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/DinovTMPLZEPGKCHAKT11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DohertyNKRHSR11, author = {Kathleen M. Doherty and Priyanka Nakka and Bracken M. King and Soo{-}Yon Rhee and Susan P. Holmes and Robert W. Shafer and Mala L. Radhakrishnan}, title = {A multifaceted analysis of {HIV-1} protease multidrug resistance phenotypes}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {477}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-477}, doi = {10.1186/1471-2105-12-477}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/DohertyNKRHSR11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DomanovaBMBKHB11, author = {Olga Domanova and Stefan Borbe and Stefanie Muhlfeld and Martin Becker and Ralf Kubitz and Dieter H{\"{a}}ussinger and Thomas Berlage}, title = {Toponomics method for the automated quantification of membrane protein translocation}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {370}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-370}, doi = {10.1186/1471-2105-12-370}, timestamp = {Tue, 22 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/DomanovaBMBKHB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DottoriniSMMC11, author = {Tania Dottorini and Nicola Senin and Giorgio Mazzoleni and Kalle Magnusson and Andrea Crisanti}, title = {Gepoclu: a software tool for identifying and analyzing gene positional clusters in large-scale gene expression analysis}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {34}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-34}, doi = {10.1186/1471-2105-12-34}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/DottoriniSMMC11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DoyleMFTM11, author = {Scott Doyle and James Monaco and Michael D. Feldman and John Tomaszewski and Anant Madabhushi}, title = {An Active Learning Based Classification Strategy for the Minority Class Problem: Application to Histopathology Annotation}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {424}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-424}, doi = {10.1186/1471-2105-12-424}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/DoyleMFTM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DragievNM11, author = {Plamen Dragiev and Robert Nadon and Vladimir Makarenkov}, title = {Systematic error detection in experimental high-throughput screening}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {25}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-25}, doi = {10.1186/1471-2105-12-25}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/DragievNM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Eckel-PassowAMKA11, author = {Jeanette E. Eckel{-}Passow and Elizabeth J. Atkinson and Sooraj Maharjan and Sharon L. R. Kardia and Mariza de Andrade}, title = {Software comparison for evaluating genomic copy number variation for Affymetrix 6.0 {SNP} array platform}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {220}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-220}, doi = {10.1186/1471-2105-12-220}, timestamp = {Mon, 26 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/Eckel-PassowAMKA11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/EichnerZLR11, author = {Johannes Eichner and Georg Zeller and Sascha Laubinger and Gunnar R{\"{a}}tsch}, title = {Support vector machines-based identification of alternative splicing in Arabidopsis thaliana from whole-genome tiling arrays}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {55}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-55}, doi = {10.1186/1471-2105-12-55}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/EichnerZLR11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/EickholtDC11, author = {Jesse Eickholt and Xin Deng and Jianlin Cheng}, title = {DoBo: Protein domain boundary prediction by integrating evolutionary signals and machine learning}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {43}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-43}, doi = {10.1186/1471-2105-12-43}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/EickholtDC11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ExarchosERPF11, author = {Costas P. Exarchos and Themis P. Exarchos and Georgios Rigas and Costas Papaloukas and Dimitrios I. Fotiadis}, title = {Extraction of consensus protein patterns in regions containing non-proline \emph{cis }peptide bonds and their functional assessment}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {142}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-142}, doi = {10.1186/1471-2105-12-142}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ExarchosERPF11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/FaheyBMJPKSRCCFK11, author = {Marie E. Fahey and Melanie J. Bennett and Cathal Mahon and Stefanie J{\"{a}}ger and Lars Pache and Dhiraj Kumar and Alex Shapiro and Kanury Rao and Sumit K. Chanda and Charles S. Craik and Alan D. Frankel and Nevan J. Krogan}, title = {GPS-Prot: a web-based visualization platform for integrating host-pathogen interaction data}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {298}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-298}, doi = {10.1186/1471-2105-12-298}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/FaheyBMJPKSRCCFK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/FangLDH11, author = {Yu{-}Ching Fang and Po{-}Ting Lai and Hong{-}Jie Dai and Wen{-}Lian Hsu}, title = {MeInfoText 2.0: gene methylation and cancer relation extraction from biomedical literature}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {471}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-471}, doi = {10.1186/1471-2105-12-471}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/FangLDH11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/FaureSM11, author = {Andre J. Faure and Cathal Seoighe and Nicola J. Mulder}, title = {Investigating the effect of paralogs on microarray gene-set analysis}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {29}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-29}, doi = {10.1186/1471-2105-12-29}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/FaureSM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/FengGS11, author = {Xin Feng and Robert Grossman and Lincoln Stein}, title = {PeakRanger: {A} cloud-enabled peak caller for ChIP-seq data}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {139}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-139}, doi = {10.1186/1471-2105-12-139}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/FengGS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/FernandesFROF11, author = {Francisco Fernandes and Paulo G. S. da Fonseca and Lu{\'{\i}}s M. S. Russo and Arlindo L. Oliveira and Ana T. Freitas}, title = {Efficient alignment of pyrosequencing reads for re-sequencing applications}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {163}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-163}, doi = {10.1186/1471-2105-12-163}, timestamp = {Mon, 16 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/FernandesFROF11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/FloresG11, author = {Samuel Flores and Mark B. Gerstein}, title = {Predicting protein ligand binding motions with the Conformation Explorer}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {417}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-417}, doi = {10.1186/1471-2105-12-417}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/FloresG11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/FontesS11, author = {Magnus Fontes and Charlotte Soneson}, title = {The projection score - an evaluation criterion for variable subset selection in {PCA} visualization}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {307}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-307}, doi = {10.1186/1471-2105-12-307}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/FontesS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ForslundPS11, author = {Kristoffer Forslund and Isabella Pekkari and Erik L. L. Sonnhammer}, title = {Domain architecture conservation in orthologs}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {326}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-326}, doi = {10.1186/1471-2105-12-326}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ForslundPS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/FozardKBKJB11, author = {John A. Fozard and Glen R. Kirkham and Lee D. K. Buttery and John R. King and Oliver E. Jensen and Helen M. Byrne}, title = {Techniques for analysing pattern formation in populations of stem cells and their progeny}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {396}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-396}, doi = {10.1186/1471-2105-12-396}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/FozardKBKJB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/FraccalvieriPSB11, author = {Domenico Fraccalvieri and Alessandro Pandini and Fabio Stella and Laura Bonati}, title = {Conformational and functional analysis of molecular dynamics trajectories by Self-Organising Maps}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {158}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-158}, doi = {10.1186/1471-2105-12-158}, timestamp = {Sun, 17 Dec 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/FraccalvieriPSB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/FrazeeLL11, author = {Alyssa C. Frazee and Ben Langmead and Jeffrey T. Leek}, title = {ReCount: {A} multi-experiment resource of analysis-ready RNA-seq gene count datasets}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {449}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-449}, doi = {10.1186/1471-2105-12-449}, timestamp = {Fri, 27 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/FrazeeLL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/FronzaTAN11, author = {Raffaele Fronza and Michele Tramonti and William R. Atchley and Christine Nardini}, title = {Joint Analysis of Transcriptional and post- Transcriptional Data: Searching Emergent Properties in Brain Tumor Samples}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {86}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-86}, doi = {10.1186/1471-2105-12-86}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/FronzaTAN11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/FruehwirthMP11, author = {Rudolf Fr{\"{u}}hwirth and Deepak R. Mani and Saumyadipta Pyne}, title = {Clustering with position-specific constraints on variance: Applying redescending M-estimators to label-free {LC-MS} data analysis}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {358}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-358}, doi = {10.1186/1471-2105-12-358}, timestamp = {Fri, 09 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/FruehwirthMP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/FuJD11, author = {Yao Fu and Laura R. Jarboe and Julie A. Dickerson}, title = {Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {233}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-233}, doi = {10.1186/1471-2105-12-233}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/FuJD11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GadePFBWKBSB11, author = {Stephan Gade and Christine Porzelius and Maria F{\"{a}}lth and Jan C. Brase and Daniela Wuttig and Ruprecht Kuner and Harald Binder and Holger S{\"{u}}ltmann and Tim Bei{\ss}barth}, title = {Graph based fusion of miRNA and mRNA expression data improves clinical outcome prediction in prostate cancer}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {488}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-488}, doi = {10.1186/1471-2105-12-488}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GadePFBWKBSB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GagneurET11, author = {Julien Gagneur and Markus C. Elze and Achim Tresch}, title = {Selective Phenotyping, Entropy Reduction and the Mastermind Game}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {406}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-406}, doi = {10.1186/1471-2105-12-406}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GagneurET11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GalloCP11, author = {Cristian Andr{\'{e}}s Gallo and Jessica Andrea Carballido and Ignacio Ponzoni}, title = {Discovering Time-Lagged Rules from Microarray Data using Gene Profile Classifiers}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {123}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-123}, doi = {10.1186/1471-2105-12-123}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/GalloCP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GalloneSAJ11, author = {Giuseppe Gallone and T. Ian Simpson and J. Douglas Armstrong and Andrew P. Jarman}, title = {Bio: : Homology: : InterologWalk - {A} Perl module to build putative protein-protein interaction networks through interolog mapping}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {289}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-289}, doi = {10.1186/1471-2105-12-289}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/GalloneSAJ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GaoDYW11, author = {Hongyun Gao and Yongchao Dou and Jialiang Yang and Jun Wang}, title = {New methods to measure residues coevolution in proteins}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {206}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-206}, doi = {10.1186/1471-2105-12-206}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GaoDYW11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GaoW11, author = {Shouguo Gao and Xujing Wang}, title = {Quantitative utilization of prior biological knowledge in the Bayesian network modeling of gene expression data}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {359}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-359}, doi = {10.1186/1471-2105-12-359}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GaoW11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GauthierMF11, author = {Franck Gauthier and Olivier C. Martin and Matthieu Falque}, title = {{CODA} (CrossOver Distribution Analyzer): quantitative characterization of crossover position patterns along chromosomes}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {27}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-27}, doi = {10.1186/1471-2105-12-27}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/GauthierMF11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GeifmanR11, author = {Nophar Geifman and Eitan Rubin}, title = {Towards an Age-Phenome Knowledge-base}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {229}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-229}, doi = {10.1186/1471-2105-12-229}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GeifmanR11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GelJJPH11, author = {Bernat Gel and Andrew M. Jenkinson and Rafael C. Jim{\'{e}}nez and Xavier Messeguer Peypoch and Henning Hermjakob}, title = {easyDAS: Automatic creation of {DAS} servers}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {23}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-23}, doi = {10.1186/1471-2105-12-23}, timestamp = {Thu, 25 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/GelJJPH11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GhodsiLP11, author = {Mohammadreza Ghodsi and Bo Liu and Mihai Pop}, title = {{DNACLUST:} accurate and efficient clustering of phylogenetic marker genes}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {271}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-271}, doi = {10.1186/1471-2105-12-271}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GhodsiLP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GiannopoulouE11, author = {Eugenia G. Giannopoulou and Olivier Elemento}, title = {An integrated ChIP-seq analysis platform with customizable workflows}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {277}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-277}, doi = {10.1186/1471-2105-12-277}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GiannopoulouE11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GiannopoulouLM11, author = {Eugenia G. Giannopoulou and George Lepouras and Elias S. Manolakos}, title = {Visualizing Meta-Features in Proteomic Maps}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {308}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-308}, doi = {10.1186/1471-2105-12-308}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GiannopoulouLM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Glez-PenaGRFP11, author = {Daniel Glez{-}Pe{\~{n}}a and Gonzalo G{\'{o}}mez{-}L{\'{o}}pez and Miguel Reboiro{-}Jato and Florentino Fdez{-}Riverola and David G. Pisano}, title = {PileLine: a toolbox to handle genome position information in next-generation sequencing studies}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {31}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-31}, doi = {10.1186/1471-2105-12-31}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Glez-PenaGRFP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GolugulaLMFTSM11, author = {Abhishek Golugula and George Lee and Stephen R. Master and Michael D. Feldman and John Tomaszewski and David W. Speicher and Anant Madabhushi}, title = {Supervised Regularized Canonical Correlation Analysis: integrating histologic and proteomic measurements for predicting biochemical recurrence following prostate surgery}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {483}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-483}, doi = {10.1186/1471-2105-12-483}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/GolugulaLMFTSM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GongXCRLHCW11, author = {Ting Gong and Jianhua Xuan and Li Chen and Rebecca B. Riggins and Huai Li and Eric P. Hoffman and Robert Clarke and Yue Joseph Wang}, title = {Motif-guided sparse decomposition of gene expression data for regulatory module identification}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {82}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-82}, doi = {10.1186/1471-2105-12-82}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GongXCRLHCW11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GonzalezRCPRCAP11, author = {Juan R. Gonz{\'{a}}lez and Benjamin Rodriguez{-}Santiago and Alejandro C{\'{a}}ceres and Roger Pique{-}Regi and Nathaniel Rothman and Stephen J. Chanock and Llu{\'{\i}}s Armengol and Luis A. P{\'{e}}rez{-}Jurado}, title = {A fast and accurate method to detect allelic genomic imbalances underlying mosaic rearrangements using {SNP} array data}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {166}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-166}, doi = {10.1186/1471-2105-12-166}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/GonzalezRCPRCAP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GowerSL11, author = {Adam C. Gower and Avrum Spira and Marc E. Lenburg}, title = {Discovering biological connections between experimental conditions based on common patterns of differential gene expression}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {381}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-381}, doi = {10.1186/1471-2105-12-381}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/GowerSL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GreenblumESB11, author = {Sharon I. Greenblum and Sol Efroni and Carl F. Schaefer and Kenneth H. Buetow}, title = {The PathOlogist: An Automated Tool for Pathway-Centric Analysis}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {133}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-133}, doi = {10.1186/1471-2105-12-133}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GreenblumESB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GruelLLT11, author = {Jeremy Gruel and Michel Le Borgne and Nolwenn LeMeur and Nathalie Th{\'{e}}ret}, title = {Simple Shared Motifs {(SSM)} in conserved region of promoters: a new approach to identify co-regulation patterns}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {365}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-365}, doi = {10.1186/1471-2105-12-365}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GruelLLT11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GuZJMC11, author = {Haibin Gu and Pengcheng Zhu and Yinming Jiao and Yijun Meng and Ming Chen}, title = {PRIN, a predicted rice interactome network}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {161}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-161}, doi = {10.1186/1471-2105-12-161}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GuZJMC11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GundersenKAFHS11, author = {Sveinung Gundersen and Mat{\'{u}}s Kalas and Osman Abul and Arnoldo Frigessi and Eivind Hovig and Geir Kjetil Sandve}, title = {Identifying elemental genomic track types and representing them uniformly}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {494}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-494}, doi = {10.1186/1471-2105-12-494}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GundersenKAFHS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GuntherGS11, author = {Torsten Gunther and Inka Gawenda and Karl J. Schmid}, title = {phenosim - {A} software to simulate phenotypes for testing in genome-wide association studies}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {265}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-265}, doi = {10.1186/1471-2105-12-265}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GuntherGS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GuoKLSHS11, author = {Yufan Guo and Anna Korhonen and Maria Liakata and Ilona Silins and Johan H{\"{o}}gberg and Ulla Stenius}, title = {A comparison and user-based evaluation of models of textual information structure in the context of cancer risk assessment}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {69}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-69}, doi = {10.1186/1471-2105-12-69}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GuoKLSHS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HabierFKG11, author = {David Habier and Rohan L. Fernando and Kadir Kizilkaya and Dorian Garrick}, title = {Extension of the Bayesian Alphabet for Genomic Selection}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {186}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-186}, doi = {10.1186/1471-2105-12-186}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HabierFKG11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HarmanciSM11, author = {Arif Ozgun Harmanci and Gaurav Sharma and David H. Mathews}, title = {TurboFold: Iterative probabilistic estimation of secondary structures for multiple {RNA} sequences}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {108}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-108}, doi = {10.1186/1471-2105-12-108}, timestamp = {Wed, 14 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/HarmanciSM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HarnsomburanaGBSVS11, author = {Jaturon Harnsomburana and Jason M. Green and Adrian S. Barb and Mary L. Schaeffer and Leszek Vincent and Chi{-}Ren Shyu}, title = {Computable visually observed phenotype ontological framework for plants}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {260}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-260}, doi = {10.1186/1471-2105-12-260}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HarnsomburanaGBSVS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HartmannCHSS11, author = {Anja Hartmann and Tobias Czauderna and Roberto Hoffmann and Nils Stein and Falk Schreiber}, title = {HTPheno: An Image Analysis Pipeline for High-Throughput Plant Phenotyping}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {148}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-148}, doi = {10.1186/1471-2105-12-148}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/HartmannCHSS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HasenauerWDRSA11, author = {Jan Hasenauer and Steffen Waldherr and Malgorzata Doszczak and Nicole Radde and Peter Scheurich and Frank Allg{\"{o}}wer}, title = {Identification of models of heterogeneous cell populations from population snapshot data}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {125}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-125}, doi = {10.1186/1471-2105-12-125}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HasenauerWDRSA11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HaskinsPZ11, author = {William H. Haskins and Konstantinos Petritis and Jianqiu Zhang}, title = {MRCQuant- an accurate {LC/MS} relative isotopic quantification algorithm on {TOF} instruments}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {74}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-74}, doi = {10.1186/1471-2105-12-74}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HaskinsPZ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HeckmannSKS11, author = {Lars{-}Henrik Heckmann and Peter B. S{\o}rensen and Paul Henning Krogh and Jesper G. Sorensen}, title = {NORMA-Gene: {A} simple and robust method for qPCR normalization based on target gene data}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {250}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-250}, doi = {10.1186/1471-2105-12-250}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HeckmannSKS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HeineLE11, author = {John J. Heine and Walker H. Land Jr. and Kathleen M. Egan}, title = {Statistical learning techniques applied to epidemiology: a simulated case-control comparison study with logistic regression}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {37}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-37}, doi = {10.1186/1471-2105-12-37}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HeineLE11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HempelKNK11, author = {Sabrina Hempel and Aneta Koseska and Zoran Nikoloski and J{\"{u}}rgen Kurths}, title = {Unraveling gene regulatory networks from time-resolved gene expression data - a measures comparison study}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {292}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-292}, doi = {10.1186/1471-2105-12-292}, timestamp = {Mon, 03 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HempelKNK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HerbigN11, author = {Alexander Herbig and Kay Nieselt}, title = {nocoRNAc: Characterization of non-coding RNAs in prokaryotes}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {40}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-40}, doi = {10.1186/1471-2105-12-40}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HerbigN11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HermanOJLVP11, author = {Dorota Herman and David Ochoa and David de Juan and Daniel Lopez and Alfonso Valencia and Florencio Pazos}, title = {Selection of organisms for the co-evolution-based study of protein interactions}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {363}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-363}, doi = {10.1186/1471-2105-12-363}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/HermanOJLVP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HessWQISP11, author = {Kenneth R. Hess and Caimiao Wei and Yuan Qi and Takayuki Iwamoto and W. Fraser Symmans and Lajos Pusztai}, title = {Lack of sufficiently strong informative features limits the potential of gene expression analysis as predictive tool for many clinical classification problems}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {463}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-463}, doi = {10.1186/1471-2105-12-463}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HessWQISP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HillAMKS11, author = {Jonathon T. Hill and Keith R. Anderson and Teresa L. Mastracci and Klaus H. Kaestner and Lori Sussel}, title = {Novel computational analysis of protein binding microarray data identifies direct targets of Nkx2.2 in the pancreas}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {62}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-62}, doi = {10.1186/1471-2105-12-62}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/HillAMKS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HinkelmannBGMBVL11, author = {Franziska Hinkelmann and Madison Brandon and Bonny Guang and Rustin McNeill and Grigoriy Blekherman and Alan Veliz{-}Cuba and Reinhard C. Laubenbacher}, title = {{ADAM:} Analysis of Discrete Models of Biological Systems Using Computer Algebra}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {295}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-295}, doi = {10.1186/1471-2105-12-295}, timestamp = {Sun, 04 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/HinkelmannBGMBVL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HoCHCCH11, author = {Shinn{-}Ying Ho and Chih{-}Yuan Chao and Hui{-}Ling Huang and Tzai{-}Wen Chiu and Phasit Charoenkwan and Eric Hwang}, title = {NeurphologyJ: an automatic neuronal morphology quantification method and its application in pharmacological discovery}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {230}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-230}, doi = {10.1186/1471-2105-12-230}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/HoCHCCH11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HoltY11, author = {Carson Holt and Mark Yandell}, title = {{MAKER2:} an annotation pipeline and genome-database management tool for second-generation genome projects}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {491}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-491}, doi = {10.1186/1471-2105-12-491}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HoltY11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HoltgreweEWR11, author = {Manuel Holtgrewe and Anne{-}Katrin Emde and David Weese and Knut Reinert}, title = {A Novel And Well-Defined Benchmarking Method For Second Generation Read Mapping}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {210}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-210}, doi = {10.1186/1471-2105-12-210}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HoltgreweEWR11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HoppeHGGH11, author = {Andreas Hoppe and Sabrina Hoffmann and Andreas Gerasch and Christoph Gille and Hermann{-}Georg Holzh{\"{u}}tter}, title = {{FASIMU:} flexible software for flux-balance computation series in large metabolic networks}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {28}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-28}, doi = {10.1186/1471-2105-12-28}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/HoppeHGGH11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HowerEP11, author = {Valerie Hower and Steven N. Evans and Lior Pachter}, title = {Shape-based peak identification for ChIP-Seq}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {15}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-15}, doi = {10.1186/1471-2105-12-15}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/HowerEP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HsiehCLW11, author = {Wen{-}Ping Hsieh and Tzu{-}Ming Chu and Yu{-}Min Lin and Russell D. Wolfinger}, title = {Kernel density weighted loess normalization improves the performance of detection within asymmetrical data}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {222}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-222}, doi = {10.1186/1471-2105-12-222}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HsiehCLW11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HsuCHHCLH11, author = {Justin Bo{-}Kai Hsu and Chih{-}Min Chiu and Sheng{-}Da Hsu and Wei{-}Yun Huang and Chia{-}Hung Chien and Tzong{-}Yi Lee and Hsien{-}Da Huang}, title = {miRTar: an integrated system for identifying miRNA-target interactions in Human}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {300}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-300}, doi = {10.1186/1471-2105-12-300}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HsuCHHCLH11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HsuPHLT11, author = {Jeh{-}Ting Hsu and Chien Hua Peng and Wen{-}Ping Hsieh and Chung{-}Yu Lan and Chuan Yi Tang}, title = {A novel method to identify cooperative functional modules: study of module coordination in the \emph{Saccharomyces cerevisiae }cell cycle}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {281}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-281}, doi = {10.1186/1471-2105-12-281}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/HsuPHLT11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HuFVBBPM11, author = {Yanhui Hu and Ian Flockhart and Arunachalam Vinayagam and Clemens Bergwitz and Bonnie Berger and Norbert Perrimon and Stephanie E. Mohr}, title = {An Integrative Approach to Ortholog Prediction for Disease-Focused and Other Functional Studies}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {357}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-357}, doi = {10.1186/1471-2105-12-357}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HuFVBBPM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HuSKAKM11, author = {Ting Hu and Nicholas A. Sinnott{-}Armstrong and Jeff Kiralis and Angeline S. Andrew and Margaret R. Karagas and Jason H. Moore}, title = {Characterizing Genetic Interactions in Human Disease Association Studies Using Statistical Epistasis Networks}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {364}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-364}, doi = {10.1186/1471-2105-12-364}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HuSKAKM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HuangTQH11, author = {Wen Huang and Naoki Takebayashi and Yan Qi and Michael J. Hickerson}, title = {MTML-msBayes: Approximate Bayesian comparative phylogeographic inference from multiple taxa and multiple loci with rate heterogeneity}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {1}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-1}, doi = {10.1186/1471-2105-12-1}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HuangTQH11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HuangW11, author = {Yao{-}Ting Huang and Min{-}Han Wu}, title = {Inference of Chromosome-Specific Copy Numbers Using Population Haplotypes}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {194}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-194}, doi = {10.1186/1471-2105-12-194}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/HuangW11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HufskyKJSB11, author = {Franziska Hufsky and L{\'{e}}on Kuchenbecker and Katharina Jahn and Jens Stoye and Sebastian B{\"{o}}cker}, title = {Swiftly Computing Center Strings}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {106}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-106}, doi = {10.1186/1471-2105-12-106}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HufskyKJSB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Hughes11, author = {Joseph Hughes}, title = {TreeRipper web application: towards a fully automated optical tree recognition software}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {178}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-178}, doi = {10.1186/1471-2105-12-178}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Hughes11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HumburgHBS11, author = {Peter Humburg and Chris A. Helliwell and David W. Bulger and Glenn Stone}, title = {ChIPseqR: Analysis of ChIP-seq Experiments}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {39}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-39}, doi = {10.1186/1471-2105-12-39}, timestamp = {Tue, 05 Jan 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HumburgHBS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HurL11, author = {Youngmi Hur and Hyunju Lee}, title = {Wavelet-based identification of {DNA} focal genomic aberrations from single nucleotide polymorphism arrays}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {146}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-146}, doi = {10.1186/1471-2105-12-146}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HurL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HwangKSL11, author = {Sohyun Hwang and Sangwoo Kim and Heesung Shin and Doheon Lee}, title = {Context-dependent transcriptional regulations between signal transduction pathways}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {19}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-19}, doi = {10.1186/1471-2105-12-19}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HwangKSL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/IacucciOMM11, author = {Ernesto Iacucci and Fabian Ojeda and Bart De Moor and Yves Moreau}, title = {Predicting Receptor-Ligand Pairs through Kernel Learning}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {336}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-336}, doi = {10.1186/1471-2105-12-336}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/IacucciOMM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/IntosalmiMRL11, author = {Jukka Intosalmi and Tiina Manninen and Keijo Ruohonen and Marja{-}Leena Linne}, title = {Computational study of noise in a large signal transduction network}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {252}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-252}, doi = {10.1186/1471-2105-12-252}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/IntosalmiMRL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/IsellaRCM11, author = {Claudio Isella and Tommaso Renzulli and Davide Cor{\`{a}} and Enzo Medico}, title = {Mulcom: a multiple comparison statistical test for microarray data in Bioconductor}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {382}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-382}, doi = {10.1186/1471-2105-12-382}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/IsellaRCM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Izquierdo-CarrascoSS11, author = {Fernando Izquierdo{-}Carrasco and Stephen A. Smith and Alexandros Stamatakis}, title = {Algorithms, data structures, and numerics for likelihood-based phylogenetic inference of huge trees}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {470}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-470}, doi = {10.1186/1471-2105-12-470}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Izquierdo-CarrascoSS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/IzzoKES11, author = {Joseph A. Izzo and Namhee Kim and Shereef Elmetwaly and Tamar Schlick}, title = {{RAG:} An Update to the RNA-As-Graphs Resource}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {219}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-219}, doi = {10.1186/1471-2105-12-219}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/IzzoKES11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/JanssenSSG11, author = {Stefan Janssen and Christian Schudoma and Gerhard Steger and Robert Giegerich}, title = {Lost in folding space? Comparing four variants of the thermodynamic model for {RNA} secondary structure prediction}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {429}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-429}, doi = {10.1186/1471-2105-12-429}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/JanssenSSG11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/JeongSZKS11, author = {Jaesik Jeong and Xue Shi and Xiang Zhang and Seongho Kim and Changyu Shen}, title = {An empirical Bayes model using a competition score for metabolite identification in gas chromatography mass spectrometry}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {392}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-392}, doi = {10.1186/1471-2105-12-392}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/JeongSZKS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/JethavaBDV11, author = {Vinay Jethava and Chiranjib Bhattacharyya and Devdatt P. Dubhashi and Goutham N. Vemuri}, title = {{NETGEM:} Network Embedded Temporal GEnerative Model for gene expression data}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {327}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-327}, doi = {10.1186/1471-2105-12-327}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/JethavaBDV11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/JhambRMSCSP11, author = {Deepali Jhamb and Nandini Rao and Derek J. Milner and Fengyu Song and Jo Ann Cameron and David L. Stocum and Mathew J. Palakal}, title = {Network based transcription factor analysis of regenerating axolotl limbs}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {80}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-80}, doi = {10.1186/1471-2105-12-80}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/JhambRMSCSP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/JiSDL11, author = {Yan Ji and Yixiang Shi and Guohui Ding and Yixue Li}, title = {A new strategy for better genome assembly from very short reads}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {493}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-493}, doi = {10.1186/1471-2105-12-493}, timestamp = {Wed, 13 Jan 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/JiSDL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/JiangNBV11, author = {Xia Jiang and Richard E. Neapolitan and M. Michael Barmada and Shyam Visweswaran}, title = {Learning genetic epistasis using Bayesian network scoring criteria}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {89}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-89}, doi = {10.1186/1471-2105-12-89}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/JiangNBV11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/JiaoLPPJGTNT11, author = {Yan Jiao and Katherine Lawler and Gargi S. Patel and Arnie Purushotham and Annete F. Jones and Anita Grigoriadis and Andrew Tutt and Tony C. Ng and Andrew E. Teschendorff}, title = {{DART:} Denoising Algorithm based on Relevance network Topology improves molecular pathway activity inference}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {403}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-403}, doi = {10.1186/1471-2105-12-403}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/JiaoLPPJGTNT11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Jimeno-YepesMA11, author = {Antonio Jos{\'{e}} Jimeno{-}Yepes and Bridget T. McInnes and Alan R. Aronson}, title = {Exploiting MeSH indexing in {MEDLINE} to generate a data set for word sense disambiguation}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {223}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-223}, doi = {10.1186/1471-2105-12-223}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Jimeno-YepesMA11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/JonesKB11, author = {Martin O. Jones and Georgios D. Koutsovoulos and Mark L. Blaxter}, title = {iPhy: an integrated phylogenetic workbench for supermatrix analyses}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {30}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-30}, doi = {10.1186/1471-2105-12-30}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/JonesKB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/JungFB11, author = {Klaus Jung and Tim Friede and Tim Bei{\ss}barth}, title = {Reporting {FDR} analogous confidence intervals for the log fold change of differentially expressed genes}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {288}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-288}, doi = {10.1186/1471-2105-12-288}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/JungFB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/JungM11, author = {Sang{-}Kyu Jung and Karen McDonald}, title = {Visual Gene Developer: a fully programmable bioinformatics software for synthetic gene optimization}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {340}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-340}, doi = {10.1186/1471-2105-12-340}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/JungM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KadotaS11, author = {Koji Kadota and Kentaro Shimizu}, title = {Evaluating methods for ranking differentially expressed genes applied to MicroArray Quality Control data}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {227}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-227}, doi = {10.1186/1471-2105-12-227}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KadotaS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KalaitzisL11, author = {Alfredo A. Kalaitzis and Neil D. Lawrence}, title = {A Simple Approach to Ranking Differentially Expressed Gene Expression Time Courses through Gaussian Process Regression}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {180}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-180}, doi = {10.1186/1471-2105-12-180}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KalaitzisL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KallioVOHM11, author = {Aleksi Kallio and Niko Vuokko and Markus Ojala and Niina Haiminen and Heikki Mannila}, title = {Randomization techniques for assessing the significance of gene periodicity results}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {330}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-330}, doi = {10.1186/1471-2105-12-330}, timestamp = {Fri, 27 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KallioVOHM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KammersLHSR11, author = {Kai Kammers and Michel Lang and Jan G. Hengstler and Marcus Schmidt and J{\"{o}}rg Rahnenf{\"{u}}hrer}, title = {Survival models with preclustered gene groups as covariates}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {478}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-478}, doi = {10.1186/1471-2105-12-478}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KammersLHSR11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KandaswamyPHKM11, author = {Krishna Kumar Kandaswamy and Ganesan Pugalenthi and Mehrnaz Khodam Hazrati and Kai{-}Uwe Kalies and Thomas Martinetz}, title = {BLProt: Prediction of bioluminescent proteins based on Support Vector Machine and ReliefF feature selection}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {345}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-345}, doi = {10.1186/1471-2105-12-345}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KandaswamyPHKM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KanoBGSBHCVRHKBLPPMANPORRSCKPOT11, author = {Yoshinobu Kano and Jari Bj{\"{o}}rne and Filip Ginter and Tapio Salakoski and Ekaterina Buyko and Udo Hahn and K. Bretonnel Cohen and Karin Verspoor and Christophe Roeder and Lawrence E. Hunter and Halil Kilicoglu and Sabine Bergler and Sofie Van Landeghem and Thomas Van Parys and Yves Van de Peer and Makoto Miwa and Sophia Ananiadou and Mariana L. Neves and Alberto D. Pascual{-}Montano and Arzucan {\"{O}}zg{\"{u}}r and Dragomir R. Radev and Sebastian Riedel and Rune S{\ae}tre and Hong{-}Woo Chun and Jin{-}Dong Kim and Sampo Pyysalo and Tomoko Ohta and Jun'ichi Tsujii}, title = {U-Compare bio-event meta-service: compatible BioNLP event extraction services}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {481}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-481}, doi = {10.1186/1471-2105-12-481}, timestamp = {Sun, 04 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/KanoBGSBHCVRHKBLPPMANPORRSCKPOT11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KarpikovRG11, author = {Alexander Karpikov and Joel S. Rozowsky and Mark Gerstein}, title = {Tiling array data analysis: a multiscale approach using wavelets}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {57}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-57}, doi = {10.1186/1471-2105-12-57}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KarpikovRG11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KennedyUCCM11, author = {Ryan C. Kennedy and Maria F. Unger and Scott Christley and Frank H. Collins and Gregory R. Madey}, title = {An automated homology-based approach for identifying transposable elements}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {130}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-130}, doi = {10.1186/1471-2105-12-130}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KennedyUCCM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Kiiveri11, author = {Harri T. Kiiveri}, title = {Multivariate analysis of microarray data: differential expression and differential connection}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {42}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-42}, doi = {10.1186/1471-2105-12-42}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Kiiveri11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KilicogluRFR11, author = {Halil Kilicoglu and Graciela Rosemblat and Marcelo Fiszman and Thomas C. Rindflesch}, title = {Constructing a semantic predication gold standard from the biomedical literature}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {486}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-486}, doi = {10.1186/1471-2105-12-486}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KilicogluRFR11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KimBPGD11, author = {Hyunsoo Kim and Yingtao Bi and Sharmistha Pal and Ravi Gupta and Ramana V. Davuluri}, title = {IsoformEx: Isoform level gene expression estimation using weighted non-negative least squares from mRNA-Seq data}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {305}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-305}, doi = {10.1186/1471-2105-12-305}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/KimBPGD11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KimKFZ11, author = {Seongho Kim and Imhoi Koo and Aiqin Fang and Xiang Zhang}, title = {Smith-Waterman Peak Alignment for Comprehensive Two-dimensional Gas Chromatography Mass Spectrometry}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {235}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-235}, doi = {10.1186/1471-2105-12-235}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KimKFZ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KimLALKTGJAWJHPWN11, author = {Su Yeon Kim and Kirk E. Lohmueller and Anders Albrechtsen and Yingrui Li and Thorfinn Korneliussen and Geng Tian and Niels Grarup and Tao Jiang and Gitte Andersen and Daniel Witte and Torben J{\o}rgensen and Torben Hansen and Oluf Pedersen and Jun Wang and Rasmus Nielsen}, title = {Estimation of allele frequency and association mapping using next-generation sequencing data}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {231}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-231}, doi = {10.1186/1471-2105-12-231}, timestamp = {Sat, 27 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/KimLALKTGJAWJHPWN11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KimPJKO11, author = {Jihoon Kim and Kiltesh Patel and Hyunchul Jung and Winston Patrick Kuo and Lucila Ohno{-}Machado}, title = {AnyExpress: Integrated toolkit for analysis of cross-platform gene expression data using a fast interval matching algorithm}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {75}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-75}, doi = {10.1186/1471-2105-12-75}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KimPJKO11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KirchnerG11, author = {Donata K. Kirchner and Peter G{\"{u}}ntert}, title = {Objective identification of residue ranges for the superposition of protein structures}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {170}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-170}, doi = {10.1186/1471-2105-12-170}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KirchnerG11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KnappGRS11, author = {Bernhard Knapp and Verena Giczi and Reiner Ribarics and Wolfgang Schreiner}, title = {PeptX: Using Genetic Algorithms to optimize peptides for {MHC} binding}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {241}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-241}, doi = {10.1186/1471-2105-12-241}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KnappGRS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KnappRKMKBEREBK11, author = {Bettina Knapp and Ilka Rebhan and Anil Kumar and Petr Matula and Narsis Aftab Kiani and Marco Binder and Holger Erfle and Karl Rohr and Roland Eils and Ralf Bartenschlager and Lars Kaderali}, title = {Normalizing for individual cell population context in the analysis of high-content cellular screens}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {485}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-485}, doi = {10.1186/1471-2105-12-485}, timestamp = {Thu, 06 May 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/KnappRKMKBEREBK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KnijnenburgLRBS11, author = {Theo A. Knijnenburg and Jake Lin and Hector Rovira and John Boyle and Ilya Shmulevich}, title = {{EPEPT:} {A} web service for enhanced P-value estimation in permutation tests}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {411}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-411}, doi = {10.1186/1471-2105-12-411}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KnijnenburgLRBS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KoW11, author = {Daijin Ko and Brad Windle}, title = {Enriching for Correct Prediction of Biological Processes Using a Combination of Diverse Classifiers}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {189}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-189}, doi = {10.1186/1471-2105-12-189}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KoW11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KohlerBMCSSGR11, author = {Sebastian K{\"{o}}hler and Sebastian Bauer and Chris Mungall and Gabriele Carletti and Cynthia L. Smith and Paul N. Schofield and Georgios V. Gkoutos and Peter N. Robinson}, title = {Improving ontologies by automatic reasoning and evaluation of logical definitions}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {418}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-418}, doi = {10.1186/1471-2105-12-418}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KohlerBMCSSGR11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KonietznyDM11, author = {Sebastian G. A. Konietzny and Laura Dietz and Alice Carolyn McHardy}, title = {Inferring functional modules of protein families with probabilistic topic models}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {141}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-141}, doi = {10.1186/1471-2105-12-141}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KonietznyDM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KoperwasW11, author = {Jakub Koperwas and Krzysztof Walczak}, title = {Tree Edit Distance for Leaf-labelled trees on free leafset and its comparison with Frequent Subsplit dissimilarity and popular distance measures}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {204}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-204}, doi = {10.1186/1471-2105-12-204}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KoperwasW11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KoprivaF11, author = {Ivica Kopriva and Marko Filipovic}, title = {A mixture model with a reference-based automatic selection of components for disease classification from protein and/or gene expression levels}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {496}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-496}, doi = {10.1186/1471-2105-12-496}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KoprivaF11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KrishnadevS11, author = {Oruganty Krishnadev and Narayanaswamy Srinivasan}, title = {AlignHUSH : Alignment of HMMs Using Structure and Hydrophobicity information}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {275}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-275}, doi = {10.1186/1471-2105-12-275}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KrishnadevS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KrishnamoorthyPDDGM11, author = {Mohan Krishnamoorthy and Pragneshkumar Patel and Mira Dimitrijevic and Jonathan Dietrich and Margaret Green and Catherine Macken}, title = {Tree Pruner: An efficient tool for selecting data from a biased genetic database}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {51}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-51}, doi = {10.1186/1471-2105-12-51}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KrishnamoorthyPDDGM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Kriston-ViziTPYLKW11, author = {Janos Kriston{-}Vizi and Ng Wee Thong and Cheok Leong Poh and Kwo Chia Yee and Joan Sim Poh Ling and Rachel Kraut and Martin Wasser}, title = {Gebiss: An ImageJ Plugin for the Specification of Ground Truth and the Performance Evaluation of 3D Segmentation Algorithms}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {232}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-232}, doi = {10.1186/1471-2105-12-232}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Kriston-ViziTPYLKW11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KritikosMVK11, author = {George D. Kritikos and Charalampos N. Moschopoulos and Michalis Vazirgiannis and Sophia Kossida}, title = {Noise reduction in protein-protein interaction graphs by the implementation of a novel weighting scheme}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {239}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-239}, doi = {10.1186/1471-2105-12-239}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KritikosMVK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KuchaievSHP11, author = {Oleksii Kuchaiev and Aleksandar Stevanovic and Wayne B. Hayes and Natasa Przulj}, title = {GraphCruch 2: Software tool for network modeling, alignment and clustering}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {24}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-24}, doi = {10.1186/1471-2105-12-24}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/KuchaievSHP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KumarCMEBSK11, author = {Surendra Kumar and Tor Carlsen and Bj{\o}rn{-}Helge Mevik and P{\aa}l Enger and Rakel Blaalid and Kamran Shalchian{-}Tabrizi and Havard Kauserud}, title = {{CLOTU:} An online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {182}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-182}, doi = {10.1186/1471-2105-12-182}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/KumarCMEBSK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KurkiPSYJFWP11, author = {Mitja I. Kurki and Jussi Paananen and Markus Storvik and Seppo Yl{\"{a}}{-}Herttuala and Juha E. J{\"{a}}{\"{a}}skel{\"{a}}inen and Mikael von und zu Fraunberg and Garry Wong and Petri Pehkonen}, title = {{TAFFEL:} Independent Enrichment Analysis of gene sets}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {171}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-171}, doi = {10.1186/1471-2105-12-171}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/KurkiPSYJFWP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LabajSK11, author = {Pawel P. Labaj and Peter Sykacek and David P. Kreil}, title = {An analysis of single amino acid repeats as use case for application specific background models}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {173}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-173}, doi = {10.1186/1471-2105-12-173}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/LabajSK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LancasterPPCMSJTKATSTA11, author = {W. Andrew Lancaster and Jeremy L. Praissman and Farris L. Poole II and Aleksandar Cvetkovic and Angeli L. Menon and Joseph W. Scott and Francis E. Jenney Jr. and Michael P. Thorgersen and Ewa Kalisiak and Junefredo V. Apon and Sunia A. Trauger and Gary Siuzdak and John A. Tainer and Michael W. W. Adams}, title = {A Computational Framework for Proteome-Wide Pursuit and Prediction of Metalloproteins using {ICP-MS} and {MS/MS} Data}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {64}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-64}, doi = {10.1186/1471-2105-12-64}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/LancasterPPCMSJTKATSTA11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LatendresseK11, author = {Mario Latendresse and Peter D. Karp}, title = {Web-Based Metabolic Network Visualization with a Zooming User Interface}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {176}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-176}, doi = {10.1186/1471-2105-12-176}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LatendresseK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LaurilaOALOYW11, author = {Kirsti Laurila and Bodil Oster and Claus L. Andersen and Philippe Lamy and Torben F. {\O}rntoft and Olli Yli{-}Harja and Carsten Wiuf}, title = {A Beta-Mixture Model for Dimensionality Reduction, Sample Classification and Analysis}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {215}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-215}, doi = {10.1186/1471-2105-12-215}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LaurilaOALOYW11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LechnerFSMSP11, author = {Marcus Lechner and Sven Findei{\ss} and Lydia Steiner and Manja Marz and Peter F. Stadler and Sonja J. Prohaska}, title = {Proteinortho: Detection of (Co-)Orthologs in Large-Scale Analysis}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {124}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-124}, doi = {10.1186/1471-2105-12-124}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/LechnerFSMSP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LeeBL11, author = {Tzong{-}Yi Lee and Neil Arvin Breta{\~{n}}a and Cheng{-}Tsung Lu}, title = {PlantPhos: using Maximal Dependence Decomposition to Identify Plant Phosphorylation Sites with Substrate Site Specificity}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {261}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-261}, doi = {10.1186/1471-2105-12-261}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/LeeBL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LeeKL11, author = {Seungyeoun Lee and Jinheum Kim and Sunho Lee}, title = {A comparative study on gene-set analysis methods for assessing differential expression associated with the survival phenotype}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {377}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-377}, doi = {10.1186/1471-2105-12-377}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LeeKL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LeeKLPTLP11, author = {Seungmook Lee and Min{-}Seok Kwon and Hyoung{-}Joo Lee and Young{-}Ki Paik and Haixu Tang and Jae K. Lee and Taesung Park}, title = {Enhanced peptide quantification using spectral count clustering and cluster abundance}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {423}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-423}, doi = {10.1186/1471-2105-12-423}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LeeKLPTLP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LehaBJ11, author = {Andreas Leha and Tim Bei{\ss}barth and Klaus Jung}, title = {Sequential Interim Analyses of Survival Data in {DNA} Microarray Experiments}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {127}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-127}, doi = {10.1186/1471-2105-12-127}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LehaBJ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LemaitreBCTTST11, author = {Claire Lemaitre and Aur{\'{e}}lien Barr{\'{e}} and Christine Citti and Florence Tardy and Francois Thiaucourt and Pascal Sirand{-}Pugnet and Patricia Th{\'{e}}bault}, title = {A novel substitution matrix fitted to the compositional bias in Mollicutes improves the prediction of homologous relationships}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {457}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-457}, doi = {10.1186/1471-2105-12-457}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/LemaitreBCTTST11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LemonsHH11, author = {Nathan W. Lemons and Bin Hu and William S. Hlavacek}, title = {Hierarchical graphs for rule-based modeling of biochemical systems}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {45}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-45}, doi = {10.1186/1471-2105-12-45}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LemonsHH11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LeonelliDCHL11, author = {Sabina Leonelli and Alexander D. Diehl and Karen R. Christie and Midori A. Harris and Jane Lomax}, title = {How the Gene Ontology Evolves}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {325}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-325}, doi = {10.1186/1471-2105-12-325}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LeonelliDCHL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LesniewskaO11, author = {Anna Lesniewska and Michal J. Okoniewski}, title = {rnaSeqMap: a Bioconductor package for {RNA} sequencing data exploration}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {200}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-200}, doi = {10.1186/1471-2105-12-200}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LesniewskaO11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LevenstienK11, author = {Mark A. Levenstien and Robert J. Klein}, title = {Predicting functionally important {SNP} classes based on negative selection}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {26}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-26}, doi = {10.1186/1471-2105-12-26}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LevenstienK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LiBGSE11, author = {Qiyuan Li and Nicolai J. Birkbak and Balazs Gy{\"{o}}rffy and Zoltan Szallasi and Aron C. Eklund}, title = {Jetset: selecting the optimal microarray probe set to represent a gene}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {474}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-474}, doi = {10.1186/1471-2105-12-474}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LiBGSE11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LiD11, author = {Bo Li and Colin N. Dewey}, title = {{RSEM:} accurate transcript quantification from RNA-Seq data with or without a reference genome}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {323}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-323}, doi = {10.1186/1471-2105-12-323}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/LiD11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LiEBDHSSPBRS11, author = {Qiyuan Li and Aron C. Eklund and Nicolai J. Birkbak and Christine Desmedt and Benjamin Haibe{-}Kains and Christos P. Sotiriou and W. Fraser Symmans and Lajos Pusztai and S{\o}ren Brunak and Andrea L. Richardson and Zoltan Szallasi}, title = {Consistent metagenes from cancer expression profiles yield agent specific predictors of chemotherapy response}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {310}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-310}, doi = {10.1186/1471-2105-12-310}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/LiEBDHSSPBRS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LiGCLWZLLRL11, author = {Jiang Li and Bingsheng Gong and Xi Chen and Tao Liu and Chao Wu and Fan Zhang and Chunquan Li and Xiang Li and Shaoqi Rao and Xia Li}, title = {DOSim: An {R} package for similarity between diseases based on Disease Ontology}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {266}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-266}, doi = {10.1186/1471-2105-12-266}, timestamp = {Fri, 05 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LiGCLWZLLRL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LiGHLX11, author = {Lin Li and Dachuan Guo and Yangyu Huang and Shiyong Liu and Yi Xiao}, title = {ASPDock: protein-protein docking algorithm using atomic solvation parameters model}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {36}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-36}, doi = {10.1186/1471-2105-12-36}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LiGHLX11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LiHA11, author = {Shengqiao Li and E. James Harner and Donald A. Adjeroh}, title = {Random {KNN} feature selection - a fast and stable alternative to Random Forests}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {450}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-450}, doi = {10.1186/1471-2105-12-450}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LiHA11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LiS11, author = {Feng Li and Fran{\c{c}}oise Seillier{-}Moiseiwitsch}, title = {Analyzing 2D Gel Images using a Two-Component Empirical Bayes Model}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {433}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-433}, doi = {10.1186/1471-2105-12-433}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LiS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LiWXYYYL11, author = {Yizhou Li and Zhining Wen and Jiamin Xiao and Hui Yin and Lezheng Yu and Li Yang and Menglong Li}, title = {Predicting disease-associated substitution of a single amino acid by analyzing residue interactions}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {14}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-14}, doi = {10.1186/1471-2105-12-14}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LiWXYYYL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LimpitiIASWPNT11, author = {Tulaya Limpiti and Apichart Intarapanich and Anunchai Assawamakin and Philip James Shaw and Pongsakorn Wangkumhang and Jittima Piriyapongsa and Chumpol Ngamphiw and Sissades Tongsima}, title = {Study of large and highly stratified population datasets by combining iterative pruning principal component analysis and {STRUCTURE}}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {255}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-255}, doi = {10.1186/1471-2105-12-255}, timestamp = {Mon, 28 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LimpitiIASWPNT11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LinAPTD11, author = {Frank P. Y. Lin and Stephen Anthony and Thomas M. Polasek and Guy Tsafnat and Matthew P. Doogue}, title = {{BICEPP:} an example-based statistical text mining method for predicting the binary characteristics of drugs}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {112}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-112}, doi = {10.1186/1471-2105-12-112}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LinAPTD11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LinardTPL11, author = {Benjamin Linard and Julie Dawn Thompson and Olivier Poch and Odile Lecompte}, title = {OrthoInspector: comprehensive orthology analysis and visual exploration}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {11}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-11}, doi = {10.1186/1471-2105-12-11}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/LinardTPL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LippincottSK11, author = {Thomas Lippincott and Diarmuid {\'{O}} S{\'{e}}aghdha and Anna Korhonen}, title = {Exploring subdomain variation in biomedical language}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {212}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-212}, doi = {10.1186/1471-2105-12-212}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LippincottSK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LiuH11, author = {Rong Liu and Jianjun Hu}, title = {HemeBIND: a novel method for heme binding residue prediction by combining structural and sequence information}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {207}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-207}, doi = {10.1186/1471-2105-12-207}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LiuH11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LiuSM11, author = {Yongchao Liu and Bertil Schmidt and Douglas L. Maskell}, title = {DecGPU: distributed error correction on massively parallel graphics processing units using {CUDA} and {MPI}}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {85}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-85}, doi = {10.1186/1471-2105-12-85}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/LiuSM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LiuSM11a, author = {Yongchao Liu and Bertil Schmidt and Douglas L. Maskell}, title = {Parallelized short read assembly of large genomes using de Bruijn graphs}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {354}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-354}, doi = {10.1186/1471-2105-12-354}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/LiuSM11a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LiuSO11, author = {Zhe Liu and Yuanyuan Shen and Jurg Ott}, title = {Multilocus association mapping using generalized ridge logistic regression}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {384}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-384}, doi = {10.1186/1471-2105-12-384}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LiuSO11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LiuV11, author = {Shiyong Liu and Ilya A. Vakser}, title = {{DECK:} Distance and environment-dependent, coarse-grained, knowledge-based potentials for protein-protein docking}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {280}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-280}, doi = {10.1186/1471-2105-12-280}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LiuV11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LiuWAQ11, author = {Fenglong Liu and Joseph White and Corina Antonescu and John Quackenbush}, title = {{GCOD} - GeneChip Oncology Database}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {46}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-46}, doi = {10.1186/1471-2105-12-46}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LiuWAQ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LiuYKL11, author = {Liang Liu and Lili Yu and Venugopal Kalavacharla and Zhanji Liu}, title = {A Bayesian model for gene family evolution}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {426}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-426}, doi = {10.1186/1471-2105-12-426}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LiuYKL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LiuZLCZC11, author = {Qi Liu and Han Zhou and Lin Liu and Xi Chen and Ruixin Zhu and Zhi{-}Wei Cao}, title = {Multi-target {QSAR} Modelling in the Analysis and Design of {HIV-HCV} Co-Inhibitors : An In-silico Study}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {294}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-294}, doi = {10.1186/1471-2105-12-294}, timestamp = {Wed, 18 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/LiuZLCZC11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LloydS11, author = {Scott Lloyd and Quinn O. Snell}, title = {Accelerated large-scale multiple sequence alignment}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {466}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-466}, doi = {10.1186/1471-2105-12-466}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LloydS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LopezCCMP11, author = {David L{\'{o}}pez and David Casero and Shawn Cokus and Sabeeha S. Merchant and Matteo Pellegrini}, title = {Algal Functional Annotation Tool: a web-based analysis suite to functionally interpret large gene lists using integrated annotation and expression data}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {282}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-282}, doi = {10.1186/1471-2105-12-282}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LopezCCMP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LoyekRKN11, author = {Christian Loyek and Nasir M. Rajpoot and Michael Khan and Tim W. Nattkemper}, title = {BioIMAX: {A} Web 2.0 approach for easy exploratory and collaborative access to multivariate bioimage data}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {297}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-297}, doi = {10.1186/1471-2105-12-297}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LoyekRKN11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LuccioK11, author = {Eric di Luccio and Patrice Koehl}, title = {A quality metric for homology modeling: the H-factor}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {48}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-48}, doi = {10.1186/1471-2105-12-48}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LuccioK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LudwigG11, author = {Christian Ludwig and Ulrich L. G{\"{u}}nther}, title = {MetaboLab - advanced {NMR} data processing and analysis for metabolomics}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {366}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-366}, doi = {10.1186/1471-2105-12-366}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/LudwigG11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LueckingHSC11, author = {Robert K. Luecking and Brendan P. Hodkinson and Alexandros Stamatakis and Reed A. Cartwright}, title = {PICS-Ord: Unlimited Coding of Ambiguous Regions by Pairwise Identity and Cost Scores Ordination}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {10}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-10}, doi = {10.1186/1471-2105-12-10}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/LueckingHSC11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LunaKSCNAK11, author = {Augustin Luna and Evrim I. Karac and Margot Sunshine and Lucas Chang and Ruth Nussinov and Mirit I. Aladjem and Kurt W. Kohn}, title = {A Formal {MIM} Specification and Tools for the Common Exchange of {MIM} Diagrams: an XML-Based Format, an API, and a Validation Method}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {167}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-167}, doi = {10.1186/1471-2105-12-167}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LunaKSCNAK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LustgartenVGC11, author = {Jonathan L. Lustgarten and Shyam Visweswaran and Vanathi Gopalakrishnan and Gregory F. Cooper}, title = {Application of an efficient Bayesian discretization method to biomedical data}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {309}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-309}, doi = {10.1186/1471-2105-12-309}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LustgartenVGC11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LysenkoDHTHRS11, author = {Artem Lysenko and Michael Defoin{-}Platel and Keywan Hassani{-}Pak and Jan Taubert and Charlie Hodgman and Christopher J. Rawlings and Mansoor A. S. Saqi}, title = {Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {203}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-203}, doi = {10.1186/1471-2105-12-203}, timestamp = {Tue, 21 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LysenkoDHTHRS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LysholmAP11, author = {Fredrik Lysholm and Bj{\"{o}}rn Andersson and Bengt Persson}, title = {{FAAST:} Flow-space Assisted Alignment Search Tool}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {293}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-293}, doi = {10.1186/1471-2105-12-293}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LysholmAP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MaSJ11, author = {Jun Ma and Maureen A. Sartor and H. V. Jagadish}, title = {Appearance frequency modulated gene set enrichment testing}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {81}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-81}, doi = {10.1186/1471-2105-12-81}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MaSJ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MahmudS11, author = {Md Pavel Mahmud and Alexander Schliep}, title = {Fast {MCMC} Sampling for Hidden Markov Models to Determine Copy Number Variations}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {428}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-428}, doi = {10.1186/1471-2105-12-428}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MahmudS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MakelaLYR11, author = {Jarno M{\"{a}}kel{\"{a}} and Jason Lloyd{-}Price and Olli Yli{-}Harja and Andre S. Ribeiro}, title = {Stochastic sequence-level model of coupled transcription and translation in prokaryotes}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {121}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-121}, doi = {10.1186/1471-2105-12-121}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/MakelaLYR11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MallonaWE11, author = {Izaskun Mallona and Julia Weiss and Marcos Egea{-}Cortines}, title = {pcrEfficiency: a Web tool for {PCR} amplification efficiency prediction}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {404}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-404}, doi = {10.1186/1471-2105-12-404}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MallonaWE11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Martin11, author = {Florian Martin}, title = {An application of kernel methods to variety identification based on {SSR} markers genetic fingerprinting}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {177}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-177}, doi = {10.1186/1471-2105-12-177}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Martin11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MartiniRSRLC11, author = {Paolo G. V. Martini and Davide Risso and Gabriele Sales and Chiara Romualdi and Gerolamo Lanfranchi and Stefano Cagnin}, title = {Statistical Test of Expression Pattern (STEPath): a new strategy to integrate gene expression data with genomic information in individual and meta-analysis studies}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {92}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-92}, doi = {10.1186/1471-2105-12-92}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/MartiniRSRLC11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/McCallI11, author = {Matthew N. McCall and Rafael A. Irizarry}, title = {Thawing Frozen Robust Multi-array Analysis (fRMA)}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {369}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-369}, doi = {10.1186/1471-2105-12-369}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/McCallI11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/McCallMLHI11, author = {Matthew N. McCall and Peter N. Murakami and Margus Lukk and Wolfgang Huber and Rafael A. Irizarry}, title = {Assessments of Affymetrix GeneChip Microarray Quality for Laboratories and Single Samples}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {137}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-137}, doi = {10.1186/1471-2105-12-137}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/McCallMLHI11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MeachamBDMSP11, author = {Frazer Meacham and Dario Boffelli and Joseph Dhahbi and David I. K. Martin and Meromit Singer and Lior Pachter}, title = {Identification and correction of systematic error in high-throughput sequence data}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {451}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-451}, doi = {10.1186/1471-2105-12-451}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/MeachamBDMSP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MeehanMACBMD11, author = {Terrence F. Meehan and Anna Maria Masci and Amina Abdulla and Lindsay G. Cowell and Judith A. Blake and Christopher J. Mungall and Alexander D. Diehl}, title = {Logical Development of the Cell Ontology}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {6}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-6}, doi = {10.1186/1471-2105-12-6}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MeehanMACBMD11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MehmoodMSWS11, author = {Tahir Mehmood and Harald Martens and Solve Saebo and Jonas Warringer and Lars Snipen}, title = {Mining for Genotype-Phenotype Relations in Saccharomyces using Partial Least Squares}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {318}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-318}, doi = {10.1186/1471-2105-12-318}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/MehmoodMSWS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MeiWZ11, author = {Suyu Mei and Wang Fei and Shuigeng Zhou}, title = {Gene ontology based transfer learning for protein subcellular localization}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {44}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-44}, doi = {10.1186/1471-2105-12-44}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MeiWZ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MelstedP11, author = {P{\'{a}}ll Melsted and Jonathan K. Pritchard}, title = {Efficient counting of k-mers in {DNA} sequences using a Bloom Filter}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {333}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-333}, doi = {10.1186/1471-2105-12-333}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MelstedP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MeyerKBWB11, author = {Fernando Meyer and Stefan Kurtz and Rolf Backofen and Sebastian Will and Michael Beckstette}, title = {Structator: fast index-based search for {RNA} sequence-structure patterns}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {214}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-214}, doi = {10.1186/1471-2105-12-214}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MeyerKBWB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MielePD11, author = {Vincent Miele and Simon Penel and Laurent Duret}, title = {Ultra-fast sequence clustering from similarity networks with SiLiX}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {116}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-116}, doi = {10.1186/1471-2105-12-116}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MielePD11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MillerCLGKSH11, author = {Jeremy A. Miller and Chaochao Cai and Peter Langfelder and Daniel H. Geschwind and Sunil M. Kurian and Daniel R. Salomon and Steve Horvath}, title = {Strategies for aggregating gene expression data: The collapseRows {R} function}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {322}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-322}, doi = {10.1186/1471-2105-12-322}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MillerCLGKSH11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MillerYBCLCGHHNNWN11, author = {Andrew K. Miller and Tommy Yu and Randall Britten and Mike T. Cooling and James R. Lawson and Dougal Cowan and Alan Garny and Matt D. B. Halstead and Peter J. Hunter and David P. Nickerson and Geoff Nunns and Sarala M. Wimalaratne and Poul M. F. Nielsen}, title = {Revision history aware repositories of computational models of biological systems}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {22}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-22}, doi = {10.1186/1471-2105-12-22}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MillerYBCLCGHHNNWN11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MilnthorpeS11, author = {Andrew T. Milnthorpe and Mikhail Soloviev}, title = {Errors in {CGAP} xProfiler and cDNA {DGED:} the importance of library parsing and gene selection algorithms}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {97}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-97}, doi = {10.1186/1471-2105-12-97}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/MilnthorpeS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MissirianCF11, author = {Victor Missirian and Luca Comai and Vladimir Filkov}, title = {Statistical Mutation Calling from Sequenced Overlapping {DNA} Pools in {TILLING} Experiments}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {287}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-287}, doi = {10.1186/1471-2105-12-287}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MissirianCF11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MiziantyZXZDUK11, author = {Marcin J. Mizianty and Tuo Zhang and Bin Xue and Yaoqi Zhou and A. Keith Dunker and Vladimir N. Uversky and Lukasz A. Kurgan}, title = {In-silico prediction of disorder content using hybrid sequence representation}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {245}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-245}, doi = {10.1186/1471-2105-12-245}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MiziantyZXZDUK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MoffittYSPTPYW11, author = {Richard A. Moffitt and Qiqin Yin{-}Goen and Todd H. Stokes and R. Mitchell Parry and James H. Torrance and John H. Phan and Andrew N. Young and May D. Wang}, title = {caCORRECT2: Improving the accuracy and reliability of microarray data in the presence of artifacts}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {383}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-383}, doi = {10.1186/1471-2105-12-383}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/MoffittYSPTPYW11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MohtashemiWPSSD11, author = {Mojdeh Mohtashemi and David K. Walburger and Matthew W. Peterson and Felicia N. Sutton and Haley B. Skaer and James C. Diggans}, title = {Open-Target Sparse Sensing of Biological Agents using {DNA} Microarray}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {314}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-314}, doi = {10.1186/1471-2105-12-314}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MohtashemiWPSSD11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MoraD11, author = {Antonio Mora and Ian M. Donaldson}, title = {iRefR: an {R} package to manipulate the iRefIndex consolidated protein interaction database}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {455}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-455}, doi = {10.1186/1471-2105-12-455}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MoraD11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MordeletV11, author = {Fantine Mordelet and Jean{-}Philippe Vert}, title = {ProDiGe: PRioritization Of Disease Genes with multitask machine learning from positive and unlabeled examples}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {389}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-389}, doi = {10.1186/1471-2105-12-389}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MordeletV11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MorrisANBWSBF11, author = {John H. Morris and Leonard Apeltsin and Aaron M. Newman and Jan Baumbach and Tobias Wittkop and Gang Su and Gary D. Bader and Thomas E. Ferrin}, title = {clusterMaker: a multi-algorithm clustering plugin for Cytoscape}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {436}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-436}, doi = {10.1186/1471-2105-12-436}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MorrisANBWSBF11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MoughonS11, author = {Stewart E. Moughon and Ram Samudrala}, title = {LoCo: a novel main chain scoring function for protein structure prediction based on local coordinates}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {368}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-368}, doi = {10.1186/1471-2105-12-368}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MoughonS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MouradSL11, author = {Rapha{\"{e}}l Mourad and Christine Sinoquet and Philippe Leray}, title = {A hierarchical Bayesian network approach for linkage disequilibrium modeling and data-dimensionality reduction prior to genome-wide association studies}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {16}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-16}, doi = {10.1186/1471-2105-12-16}, timestamp = {Tue, 30 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/MouradSL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MuellerKGED11, author = {Laurin A. J. Mueller and Karl G. Kugler and Armin Graber and Frank Emmert{-}Streib and Matthias Dehmer}, title = {Structural Measures for Network Biology Using QuACN}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {492}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-492}, doi = {10.1186/1471-2105-12-492}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MuellerKGED11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MuppiralaHD11, author = {Usha Muppirala and Vasant G. Honavar and Drena Dobbs}, title = {Predicting RNA-Protein Interactions Using Only Sequence Information}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {489}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-489}, doi = {10.1186/1471-2105-12-489}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MuppiralaHD11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MyasnikovaSSPS11, author = {Ekaterina M. Myasnikova and Svetlana Surkova and Grigory Stein and Andrei Pisarev and Maria Samsonova}, title = {A regression system for estimation of errors introduced by confocal imaging into gene expression data in situ}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {320}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-320}, doi = {10.1186/1471-2105-12-320}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MyasnikovaSSPS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/NalbantogluWHS11, author = {{\"{O}}zkan U. Nalbantoglu and Samuel F. Way and Steven H. Hinrichs and Khalid Sayood}, title = {RAIphy: Phylogenetic classification of metagenomics samples using iterative refinement of relative abundance index profiles}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {41}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-41}, doi = {10.1186/1471-2105-12-41}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/NalbantogluWHS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/NazninSE11, author = {Farhana Naznin and Ruhul A. Sarker and Daryl Essam}, title = {Vertical Decomposition with Genetic Algorithm for Multiple Sequence Alignment}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {353}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-353}, doi = {10.1186/1471-2105-12-353}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/NazninSE11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/NeedhamHDQ11, author = {Mark Needham and Rui Hu and Sandhya Dwarkadas and Xing Qiu}, title = {Hierarchical Parallelization of Gene Differential Association Analysis}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {374}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-374}, doi = {10.1186/1471-2105-12-374}, timestamp = {Sun, 12 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/NeedhamHDQ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/NefedovS11, author = {Alexey V. Nefedov and Rovshan G. Sadygov}, title = {A parallel method for enumerating amino acid compositions and masses of all theoretical peptides}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {432}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-432}, doi = {10.1186/1471-2105-12-432}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/NefedovS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/NelsonPERBHRNLKSCSI11, author = {Elizabeth K. Nelson and Britt Piehler and Josh Eckels and Adam Rauch and Matthew Bellew and Peter Hussey and Sarah Ramsay and Cory Nathe and Karl Lum and Kevin Krouse and David Stearns and Brian Connolly and Tom Skillman and Mark Igra}, title = {LabKey Server: An open source platform for scientific data integration, analysis and collaboration}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {71}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-71}, doi = {10.1186/1471-2105-12-71}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/NelsonPERBHRNLKSCSI11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/NewtonHW11, author = {Richard Newton and Jason Hinds and Lorenz Wernisch}, title = {Empirical Bayesian models for analysing molecular serotyping microarrays}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {88}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-88}, doi = {10.1186/1471-2105-12-88}, timestamp = {Wed, 06 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/NewtonHW11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/NishiyamaTTPSTK11, author = {Takeshi Nishiyama and Kunihiko Takahashi and Toshiro Tango and Dalila Pinto and Stephen W. Scherer and Satoshi Takami and Hirohisa Kishino}, title = {A Scan Statistic to Extract Causal Gene Clusters from Case-Control Genome-wide Rare {CNV} Data}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {205}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-205}, doi = {10.1186/1471-2105-12-205}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/NishiyamaTTPSTK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ObulkasimMW11, author = {Askar Obulkasim and Gerrit Meijer and Mark A. van de Wiel}, title = {Stepwise classification of cancer samples using clinical and molecular Data}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {422}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-422}, doi = {10.1186/1471-2105-12-422}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ObulkasimMW11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/OchoaLS11, author = {Alejandro Ochoa and Manuel Llin{\'{a}}s and Mona Singh}, title = {Using context to improve protein domain identification}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {90}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-90}, doi = {10.1186/1471-2105-12-90}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/OchoaLS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Olivera-NappaAA11, author = {Alvaro Olivera{-}Nappa and Barbara A. Andrews and Juan A. Asenjo}, title = {Mutagenesis Objective Search and Selection Tool {(MOSST):} an algorithm to predict structure-function related mutations in proteins}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {122}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-122}, doi = {10.1186/1471-2105-12-122}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Olivera-NappaAA11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/OndovBP11, author = {Brian D. Ondov and Nicholas H. Bergman and Adam M. Phillippy}, title = {Interactive metagenomic visualization in a Web browser}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {385}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-385}, doi = {10.1186/1471-2105-12-385}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/OndovBP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/OnogiNM11, author = {Akio Onogi and Masanobu Nurimoto and Mitsuo Morita}, title = {Characterization of a Bayesian genetic clustering algorithm based on a Dirichlet process prior and comparison among Bayesian clustering methods}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {263}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-263}, doi = {10.1186/1471-2105-12-263}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/OnogiNM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/OnskogFLRH11, author = {Jenny {\"{O}}nskog and Eva Freyhult and Mattias Landfors and Patrik Ryd{\'{e}}n and Torgeir R. Hvidsten}, title = {Classification of microarrays; synergistic effects between normalization, gene selection and machine learning}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {390}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-390}, doi = {10.1186/1471-2105-12-390}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/OnskogFLRH11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/OsmanbeyogluG11, author = {Hatice U. Osmanbeyoglu and Madhavi Ganapathiraju}, title = {N-gram analysis of 970 microbial organisms reveals presence of biological language models}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {12}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-12}, doi = {10.1186/1471-2105-12-12}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/OsmanbeyogluG11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/OverallCTTW11, author = {Christopher C. Overall and D. Andrew Carr and Ehsan S. Tabari and Kevin J. Thompson and Jennifer W. Weller}, title = {ArrayInitiative - a tool that simplifies creating custom Affymetrix CDFs}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {136}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-136}, doi = {10.1186/1471-2105-12-136}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/OverallCTTW11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Page11, author = {Roderic D. M. Page}, title = {Extracting scientific articles from a large digital archive: BioStor and the Biodiversity Heritage Library}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {187}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-187}, doi = {10.1186/1471-2105-12-187}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Page11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PanLJLY11, author = {Dong{-}Dong Pan and Qizhai Li and Ningning Jiang and Aiyi Liu and Kai F. Yu}, title = {Robust joint analysis allowing for model uncertainty in two-stage genetic association studies}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {9}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-9}, doi = {10.1186/1471-2105-12-9}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/PanLJLY11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PanchinMASP11, author = {Alexander Y. Panchin and Sergey I. Mitrofanov and Andrei Alexeevski and Sergei A. Spirin and Yuri V. Panchin}, title = {New Words in Human Mutagenesis}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {268}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-268}, doi = {10.1186/1471-2105-12-268}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/PanchinMASP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ParksMB11, author = {Donovan H. Parks and Norman J. MacDonald and Robert G. Beiko}, title = {Classifying short genomic fragments from novel lineages using composition and homology}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {328}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-328}, doi = {10.1186/1471-2105-12-328}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ParksMB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PauletCB11, author = {Damien Paulet and Mireille Claustres and Christophe B{\'{e}}roud}, title = {Hydrophobic pulses predict transmembrane helix irregularities and channel transmembrane units}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {135}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-135}, doi = {10.1186/1471-2105-12-135}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/PauletCB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PauwelsSY11, author = {Edouard Pauwels and V{\'{e}}ronique Stoven and Yoshihiro Yamanishi}, title = {Predicting drug side-effect profiles: a chemical fragment-based approach}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {169}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-169}, doi = {10.1186/1471-2105-12-169}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/PauwelsSY11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Pavlovic-LazeticMKOMB11, author = {Gordana Pavlovic{-}Lazetic and Nenad S. Mitic and Jovana J. Kovacevic and Zoran Obradovic and Sasa N. Malkov and Milos V. Beljanski}, title = {Bioinformatics analysis of disordered proteins in prokaryotes}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {66}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-66}, doi = {10.1186/1471-2105-12-66}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Pavlovic-LazeticMKOMB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Perez-EncisoM11, author = {Miguel P{\'{e}}rez{-}Enciso and Ignacy Misztal}, title = {Qxpak.5: Old mixed model solutions for new genomics problems}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {202}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-202}, doi = {10.1186/1471-2105-12-202}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Perez-EncisoM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PerteaPS11, author = {Mihaela Pertea and Geo Pertea and Steven L. Salzberg}, title = {Detection of Lineage-Specific Evolutionary Changes among Primate Species}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {274}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-274}, doi = {10.1186/1471-2105-12-274}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/PerteaPS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PhilippeSLLCR11, author = {Nicolas Philippe and Mika{\"{e}}l Salson and Thierry Lecroq and Martine L{\'{e}}onard and Therese Commes and Eric Rivals}, title = {Querying large read collections in main memory: a versatile data structure}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {242}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-242}, doi = {10.1186/1471-2105-12-242}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/PhilippeSLLCR11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PhillipsCN11, author = {Joshua L. Phillips and Michael E. Colvin and Shawn D. Newsam}, title = {Validating Clustering of Molecular Dynamics Simulations Using Polymer Models}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {445}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-445}, doi = {10.1186/1471-2105-12-445}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/PhillipsCN11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PillmannHOHK11, author = {Holger Pillmann and Klas Hatje and Florian Odronitz and Bj{\"{o}}rn Hammesfahr and Martin Kollmar}, title = {Predicting mutually exclusive spliced exons based on exon length, splice site and reading frame conservation, and exon sequence homology}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {270}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-270}, doi = {10.1186/1471-2105-12-270}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/PillmannHOHK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PinelloBHY11, author = {Luca Pinello and Giosu{\`{e}} Lo Bosco and Bret M. Hanlon and Guo{-}Cheng Yuan}, title = {A motif-independent metric for {DNA} sequence specificity}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {408}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-408}, doi = {10.1186/1471-2105-12-408}, timestamp = {Sun, 14 Nov 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/PinelloBHY11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PlantEB11, author = {Anne L. Plant and John T. Elliott and Talapady N. Bhat}, title = {New concepts for building vocabulary for cell image ontologies}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {487}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-487}, doi = {10.1186/1471-2105-12-487}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/PlantEB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PlazaJDA11, author = {Laura Plaza and Antonio Jos{\'{e}} Jimeno{-}Yepes and Alberto D{\'{\i}}az and Alan R. Aronson}, title = {Studying the correlation between different word sense disambiguation methods and summarization effectiveness in biomedical texts}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {355}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-355}, doi = {10.1186/1471-2105-12-355}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/PlazaJDA11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PodpecanLMNTLKTPMG11, author = {Vid Podpecan and Nada Lavrac and Igor Mozetic and Petra Kralj Novak and Igor Trajkovski and Laura Langohr and Kimmo Kulovesi and Hannu Toivonen and Marko Petek and Helena Motaln and Kristina Gruden}, title = {SegMine workflows for semantic microarray data analysis in Orange4WS}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {416}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-416}, doi = {10.1186/1471-2105-12-416}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/PodpecanLMNTLKTPMG11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PoissonTG11, author = {Laila M. Poisson and Jeremy M. G. Taylor and Debashis Ghosh}, title = {Integrative set enrichment testing for multiple omics platforms}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {459}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-459}, doi = {10.1186/1471-2105-12-459}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/PoissonTG11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PonsGF11, author = {Carles Pons and Fabian Glaser and Juan Fern{\'{a}}ndez{-}Recio}, title = {Prediction of protein-binding areas by small-world residue networks and application to docking}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {378}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-378}, doi = {10.1186/1471-2105-12-378}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/PonsGF11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PrasadMFJY11, author = {Rashmi Prasad and Susan McRoy and Nadya Frid and Aravind K. Joshi and Hong Yu}, title = {The Biomedical Discourse Relation Bank}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {188}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-188}, doi = {10.1186/1471-2105-12-188}, timestamp = {Mon, 20 Apr 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/PrasadMFJY11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PressonKYCK11, author = {Angela P. Presson and Namshin Kim and Xiaofei Yan and Irvin S. Y. Chen and Sanggu Kim}, title = {Methodology and software to detect viral integration site hot-spots}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {367}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-367}, doi = {10.1186/1471-2105-12-367}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/PressonKYCK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ProsperiPBARVSCU11, author = {Mattia C. F. Prosperi and Luciano Prosperi and Alessandro Bruselles and Isabella Abbate and Gabriella Rozera and Donatella Vincenti and Maria Carmela Solmone and Maria Rosaria Capobianchi and Giovanni Ulivi}, title = {Combinatorial analysis and algorithms for quasispecies reconstruction using next-generation sequencing}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {5}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-5}, doi = {10.1186/1471-2105-12-5}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ProsperiPBARVSCU11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/QiaoZBS11, author = {Yantao Qiao and Hong Zhang and Dongbo Bu and Shiwei Sun}, title = {{PI:} An open-source software package for validation of the {SEQUEST} result and visualization of mass spectrum}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {234}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-234}, doi = {10.1186/1471-2105-12-234}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/QiaoZBS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/QuesterS11, author = {Susanne Quester and Dietmar Schomburg}, title = {EnzymeDetector: an integrated enzyme function prediction tool and database}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {376}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-376}, doi = {10.1186/1471-2105-12-376}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/QuesterS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/QuinceLDT11, author = {Christopher Quince and Anders Lanz{\'{e}}n and Russell J. Davenport and Peter J. Turnbaugh}, title = {Removing Noise From Pyrosequenced Amplicons}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {38}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-38}, doi = {10.1186/1471-2105-12-38}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/QuinceLDT11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RakovskiWMLS11, author = {Cyril Rakovski and Daniel J. Weisenberger and Paul Marjoram and Peter W. Laird and Kimberly D. Siegmund}, title = {Modeling measurement error in tumor characterization studies}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {284}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-284}, doi = {10.1186/1471-2105-12-284}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/RakovskiWMLS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RamirezKT11, author = {Sergio Ram{\'{\i}}rez and Tor Johan Mikael Karlsson and Oswaldo Trelles}, title = {{MAPI:} towards the integrated exploitation of bioinformatics Web Services}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {419}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-419}, doi = {10.1186/1471-2105-12-419}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/RamirezKT11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RangarajanSYCHOFDISCSM11, author = {Arun Rangarajan and Tim Schedl and Karen Yook and Juancarlos Chan and Stephen Haenel and Lolly Otis and Sharon Faelten and Tracey DePellegrin{-}Connelly and Ruth Isaacson and Marek S. Skrzypek and J. Michael Cherry and Paul W. Sternberg and Hans{-}Michael M{\"{u}}ller}, title = {Toward an interactive article: integrating journals and biological databases}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {175}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-175}, doi = {10.1186/1471-2105-12-175}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/RangarajanSYCHOFDISCSM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RazickMMBD11, author = {Sabry Razick and Antonio Mora and Katerina Michalickova and Paul Boddie and Ian M. Donaldson}, title = {iRefScape. {A} Cytoscape plug-in for visualization and data mining of protein interaction data from iRefIndex}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {388}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-388}, doi = {10.1186/1471-2105-12-388}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/RazickMMBD11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RegadMC11, author = {Leslie Regad and Juliette Martin and Anne{-}Claude Camproux}, title = {Dissecting protein loops with a statistical scalpel suggests a functional implication of some structural motifs}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {247}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-247}, doi = {10.1186/1471-2105-12-247}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/RegadMC11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RenWWZD11, author = {Xian{-}Wen Ren and Yong{-}Cui Wang and Yong Wang and Xiang{-}Sun Zhang and Nai{-}Yang Deng}, title = {Improving accuracy of protein-protein interaction prediction by considering the converse problem for sequence representation}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {409}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-409}, doi = {10.1186/1471-2105-12-409}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/RenWWZD11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RenardLKRRTCS11, author = {Bernhard Y. Renard and Martin L{\"{o}}wer and Yvonne Kuhne and Ulf Reimer and Andree Rothermel and {\"{O}}zlem T{\"{u}}reci and John C. Castle and Ugur Sahin}, title = {rapmad: Robust Analysis of Peptide Microarray Data}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {324}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-324}, doi = {10.1186/1471-2105-12-324}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/RenardLKRRTCS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Restrepo-MontoyaPNPP11, author = {Daniel Restrepo{-}Montoya and Camilo Pino and Luis F. Ni{\~{n}}o and Manuel{-}Elkin Patarroyo and Manuel A. Patarroyo}, title = {NClassG+: {A} classifier for non-classically secreted Gram-positive bacterial proteins}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {21}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-21}, doi = {10.1186/1471-2105-12-21}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Restrepo-MontoyaPNPP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RevannaCBD11, author = {Kashi Vishwanath Revanna and Chi{-}Chen Chiu and Ezekiel Bierschank and Qunfeng Dong}, title = {{GSV:} {A} Web-based Genome Synteny Viewer for Customized Data}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {316}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-316}, doi = {10.1186/1471-2105-12-316}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/RevannaCBD11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Reyes-HerreraFAM11, author = {Paula Helena Reyes{-}Herrera and Elisa Ficarra and Andrea Acquaviva and Enrico Macii}, title = {miREE: miRNA Recognition Elements Ensemble}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {454}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-454}, doi = {10.1186/1471-2105-12-454}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Reyes-HerreraFAM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RhrissorrakraiG11, author = {Kahn Rhrissorrakrai and Kristin C. Gunsalus}, title = {{MINE:} Module Identification in NEtworks}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {192}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-192}, doi = {10.1186/1471-2105-12-192}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/RhrissorrakraiG11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RissoSSD11, author = {Davide Risso and Katja Schwartz and Gavin Sherlock and Sandrine Dudoit}, title = {GC-Content Normalization for RNA-Seq Data}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {480}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-480}, doi = {10.1186/1471-2105-12-480}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/RissoSSD11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RitchieLCI11, author = {Matthew E. Ritchie and Ruijie Liu and Benilton S. Carvalho and Rafael A. Irizarry}, title = {Comparing genotyping algorithms for Illumina's Infinium whole-genome {SNP} BeadChips}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {68}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-68}, doi = {10.1186/1471-2105-12-68}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/RitchieLCI11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RitzPICR11, author = {Anna M. Ritz and Pamela L. Paris and Michael Ittmann and Colin C. Collins and Benjamin J. Raphael}, title = {Detection of recurrent rearrangement breakpoints from copy number data}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {114}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-114}, doi = {10.1186/1471-2105-12-114}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/RitzPICR11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RobinTHTLSM11, author = {Xavier Robin and Natacha Turck and Alexandre Hainard and Natalia Tiberti and Fr{\'{e}}d{\'{e}}rique Lisacek and Jean{-}Charles Sanchez and Markus M{\"{u}}ller}, title = {pROC: an open-source package for {R} and {S+} to analyze and compare {ROC} curves}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {77}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-77}, doi = {10.1186/1471-2105-12-77}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/RobinTHTLSM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RocheDR11, author = {Benjamin Roche and John M. Drake and Pejman Rohani}, title = {An Agent-Based Model to study the epidemiological and evolutionary dynamics of Influenza viruses}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {87}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-87}, doi = {10.1186/1471-2105-12-87}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/RocheDR11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RocheTM11, author = {Daniel B. Roche and Stuart J. Tetchner and Liam J. McGuffin}, title = {FunFOLD: an improved automated method for the prediction of ligand binding residues using 3D models of proteins}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {160}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-160}, doi = {10.1186/1471-2105-12-160}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/RocheTM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Rognes11, author = {Torbj{\o}rn Rognes}, title = {Faster Smith-Waterman database searches with inter-sequence {SIMD} parallelisation}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {221}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-221}, doi = {10.1186/1471-2105-12-221}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Rognes11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RolfeG11, author = {P. Alexander Rolfe and David K. Gifford}, title = {ReadDB Provides Efficient Storage for Mapped Short Reads}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {278}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-278}, doi = {10.1186/1471-2105-12-278}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/RolfeG11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RoskinPH11, author = {Krishna M. Roskin and Benedict Paten and David Haussler}, title = {Meta-Alignment with Crumble and Prune: Partitioning very large alignment problems for performance and parallelization}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {144}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-144}, doi = {10.1186/1471-2105-12-144}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/RoskinPH11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RousseauFFDB11, author = {Mathieu Rousseau and James Fraser and Maria A. Ferraiuolo and Josee Dostie and Mathieu Blanchette}, title = {Three-dimensional modeling of chromatin structure from interaction frequency data using Markov chain Monte Carlo sampling}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {414}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-414}, doi = {10.1186/1471-2105-12-414}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/RousseauFFDB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RudyV11, author = {Jason Rudy and Faramarz Valafar}, title = {Empirical comparison of cross-platform normalization methods for gene expression data}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {467}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-467}, doi = {10.1186/1471-2105-12-467}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/RudyV11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RuedaR11, author = {Luis Rueda and Iman Rezaeian}, title = {A Fully Automatic Gridding Method for cDNA Microarray Images}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {113}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-113}, doi = {10.1186/1471-2105-12-113}, timestamp = {Wed, 08 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/RuedaR11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RueggerVJB11, author = {Paul M. Ruegger and Gianluca Della Vedova and Tao Jiang and James Borneman}, title = {Improving Probe Set Selection for Microbial Community Analysis by Leveraging Taxonomic Information of Training Sequences}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {394}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-394}, doi = {10.1186/1471-2105-12-394}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/RueggerVJB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RussRHBB11, author = {Thomas A. Russ and Cartic Ramakrishnan and Eduard H. Hovy and Mihail Bota and Gully A. P. C. Burns}, title = {Knowledge Engineering Tools for Reasoning with Scientific Observations and Interpretations: a Neural Connectivity Use Case}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {351}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-351}, doi = {10.1186/1471-2105-12-351}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/RussRHBB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SahooNBPMS11, author = {Satya Sanket Sahoo and Vinh Nguyen and Olivier Bodenreider and Priti Parikh and Todd Minning and Amit P. Sheth}, title = {A unified framework for managing provenance information in translational research}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {461}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-461}, doi = {10.1186/1471-2105-12-461}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SahooNBPMS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SalazarJCHMB11, author = {Gustavo A. Salazar and Rafael C. Jim{\'{e}}nez and Alexander Garc{\'{\i}}a Castro and Henning Hermjakob and Nicola J. Mulder and Edwin H. Blake}, title = {{DAS} Writeback: {A} Collaborative Annotation System}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {143}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-143}, doi = {10.1186/1471-2105-12-143}, timestamp = {Thu, 25 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/SalazarJCHMB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SalicruOS11, author = {Miquel Salicru and Jordi Ocana and Alex S{\'{a}}nchez{-}Pla}, title = {Comparison of lists of genes based on functional profiles}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {401}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-401}, doi = {10.1186/1471-2105-12-401}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SalicruOS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SalimKSC11, author = {Hannah M. W. Salim and Amanda M. Koire and Nicholas A. Stover and Andre R. O. Cavalcanti}, title = {Detection of Fused Genes in Eukaryotic Genomes using Gene deFuser: Analysis of the \emph{Tetrahymena thermophila }genome}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {279}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-279}, doi = {10.1186/1471-2105-12-279}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SalimKSC11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SandersFVBAVK11, author = {Marijn P. A. Sanders and Wilco W. M. Fleuren and Stefan Verhoeven and Sven van den Beld and Wynand Alkema and Jacob de Vlieg and Jan P. G. Klomp}, title = {ss-TEA: Entropy based identification of receptor specific ligand binding residues from a multiple sequence alignment of class {A} GPCRs}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {332}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-332}, doi = {10.1186/1471-2105-12-332}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SandersFVBAVK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SandersWBMDMNLB11, author = {William S. Sanders and Nan Wang and Susan M. Bridges and Brandon M. Malone and Yoginder S. Dandass and Fiona M. McCarthy and Bindu Nanduri and Mark L. Lawrence and Shane C. Burgess}, title = {The Proteogenomic Mapping Tool}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {115}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-115}, doi = {10.1186/1471-2105-12-115}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SandersWBMDMNLB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SantosM11, author = {Jos{\'{e}} Santos Reyes and {\'{A}}ngel Monteagudo}, title = {Simulated evolution applied to study the genetic code optimality using a model of codon reassignments}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {56}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-56}, doi = {10.1186/1471-2105-12-56}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SantosM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SatoTY11, author = {Yoshiharu Sato and Akiko Takaya and Tomoko Yamamoto}, title = {Meta-analytic approach to the accurate prediction of secreted virulence effectors in Gram-negative bacteria}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {442}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-442}, doi = {10.1186/1471-2105-12-442}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SatoTY11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SchindelmanFBYS11, author = {Gary Schindelman and Jolene Fernandes and Carol Bastiani and Karen Yook and Paul W. Sternberg}, title = {Worm Phenotype Ontology: integrating phenotype data within and beyond the C. elegans community}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {32}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-32}, doi = {10.1186/1471-2105-12-32}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SchindelmanFBYS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SchmidtRPCSMS11, author = {Matthew C. Schmidt and Andrea M. Rocha and Kanchana Padmanabhan and Zhengzhang Chen and Kathleen Scott and James R. Mihelcic and Nagiza F. Samatova}, title = {Efficient alpha, beta-motif Finder for Identification of Phenotype-related Functional Modules}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {440}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-440}, doi = {10.1186/1471-2105-12-440}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SchmidtRPCSMS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SchreinerTFS11, author = {Eduard Schreiner and Leonardo G. Trabuco and Peter L. Freddolino and Klaus Schulten}, title = {Stereochemical errors and their implications to molecular dynamics simulations}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {190}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-190}, doi = {10.1186/1471-2105-12-190}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SchreinerTFS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SchulzKBR11, author = {Marcel H. Schulz and Sebastian K{\"{o}}hler and Sebastian Bauer and Peter N. Robinson}, title = {Exact score distribution computation for ontological similarity searches}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {441}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-441}, doi = {10.1186/1471-2105-12-441}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/SchulzKBR11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ScottTB11, author = {Michelle S. Scott and Peter V. Troshin and Geoffrey J. Barton}, title = {NoD: a Nucleolar localization sequence detector for eukaryotic and viral proteins}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {317}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-317}, doi = {10.1186/1471-2105-12-317}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ScottTB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SeguraJF11, author = {Joan Segura and Pamela F. Jones and Narcis Fernandez{-}Fuentes}, title = {Improving the prediction of protein binding sites by combining heterogeneous data and Voronoi Diagrams}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {352}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-352}, doi = {10.1186/1471-2105-12-352}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SeguraJF11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SeymourDSP11, author = {Emily Seymour and Rohini Damle and Alessandro Sette and Bjoern Peters}, title = {Cost sensitive hierarchical document classification to triage PubMed abstracts for manual curation}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {482}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-482}, doi = {10.1186/1471-2105-12-482}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SeymourDSP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ShangZSLYY11, author = {Junliang Shang and Junying Zhang and Yan Sun and Dan Liu and Daojun Ye and Yaling Yin}, title = {Performance analysis of novel methods for detecting epistasis}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {475}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-475}, doi = {10.1186/1471-2105-12-475}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ShangZSLYY11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SheppardSEGK11, author = {Patrick W. Sheppard and Xiaoyun Sun and John F. Emery and Rona G. Giffard and Mustafa Khammash}, title = {Quantitative characterization and analysis of the dynamic NF-kappaB response in microglia}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {276}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-276}, doi = {10.1186/1471-2105-12-276}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SheppardSEGK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ShiALHK11, author = {Fan Shi and Gad Abraham and Christopher Leckie and Izhak Haviv and Adam Kowalczyk}, title = {Meta-analysis of gene expression microarrays with missing replicates}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {84}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-84}, doi = {10.1186/1471-2105-12-84}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ShiALHK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ShiRZK11, author = {Ping Shi and Surajit Ray and Qifu Zhu and Mark A. Kon}, title = {Top Scoring Pairs for Feature Selection in Machine Learning and Applications to Cancer Outcome Prediction}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {375}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-375}, doi = {10.1186/1471-2105-12-375}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ShiRZK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ShiZ11, author = {Zhiao Shi and Bing Zhang}, title = {Fast network centrality analysis using GPUs}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {149}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-149}, doi = {10.1186/1471-2105-12-149}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ShiZ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SicotteRPDK11, author = {Hugues Sicotte and David N. Rider and Gregory A. Poland and Neelam Dhiman and Jean{-}Pierre A. Kocher}, title = {SNPPicker: High quality tag {SNP} selection across multiple populations}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {129}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-129}, doi = {10.1186/1471-2105-12-129}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SicotteRPDK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SinganJCS11, author = {Vasanth R. Singan and Thouis R. Jones and Kathleen M. Curran and Jeremy C. Simpson}, title = {Dual channel rank-based intensity weighting for quantitative co-localization of microscopy images}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {407}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-407}, doi = {10.1186/1471-2105-12-407}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/SinganJCS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SinhaM11, author = {Anshu Sinha and Marianthi Markatou}, title = {A Platform for Processing Expression of Short Time Series {(PESTS)}}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {13}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-13}, doi = {10.1186/1471-2105-12-13}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SinhaM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SinhaMACD11, author = {Amit U. Sinha and Emily Merrill and Scott A. Armstrong and Timothy W. Clark and Sudeshna Das}, title = {eXframe: reusable framework for storage, analysis and visualization of genomics experiments}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {452}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-452}, doi = {10.1186/1471-2105-12-452}, timestamp = {Tue, 04 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/SinhaMACD11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SiposMJG11, author = {Botond Sipos and Tim Massingham and Gregory E. Jordan and Nick Goldman}, title = {PhyloSim - Monte Carlo simulation of sequence evolution in the {R} statistical computing environment}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {104}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-104}, doi = {10.1186/1471-2105-12-104}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SiposMJG11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SkinnerKVMYSHM11, author = {Jeff Skinner and Yuri Kotliarov and Sudhir Varma and Karina L. Mine and Anatoly Yambartsev and Richard Simon and Yentram Huyen and Andrey Morgun}, title = {Construct and Compare Gene Coexpression Networks with DAPfinder and DAPview}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {286}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-286}, doi = {10.1186/1471-2105-12-286}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SkinnerKVMYSHM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SkogersonWBF11, author = {Kirsten Skogerson and Gert Wohlgemuth and Dinesh K. Barupal and Oliver Fiehn}, title = {The volatile compound BinBase mass spectral database}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {321}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-321}, doi = {10.1186/1471-2105-12-321}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SkogersonWBF11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SohnOLGCJ11, author = {Insuk Sohn and Kouros Owzar and Johan Lim and Stephen L. George and Stephanie MacKey Cushman and Sin{-}Ho Jung}, title = {Multiple Testing for Gene Sets from Microarray Experiments}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {209}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-209}, doi = {10.1186/1471-2105-12-209}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SohnOLGCJ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SohngenCS11, author = {Carola S{\"{o}}hngen and Antje Chang and Dietmar Schomburg}, title = {Development of an automatic Classification Scheme for Disease-related Enzyme Information}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {329}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-329}, doi = {10.1186/1471-2105-12-329}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SohngenCS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SolvangLFBK11, author = {Hiroko K. Solvang and Ole Christian Lingj{\ae}rde and Arnoldo Frigessi and Anne{-}Lise B{\o}rresen{-}Dale and Vessela N. Kristensen}, title = {Linear and non-linear dependencies between copy number aberrations and mRNA expression reveal distinct molecular pathways in Breast Cancer}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {197}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-197}, doi = {10.1186/1471-2105-12-197}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/SolvangLFBK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SongZLYGK11, author = {Xu Song and Bo{-}Li Zhang and Hongmin Liu and Bo{-}Yang Yu and Xiu{-}Mei Gao and Li{-}Yuan Kang}, title = {{IQMNMR:} Open source software using time-domain {NMR} data for automated identification and quantification of metabolites in batches}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {337}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-337}, doi = {10.1186/1471-2105-12-337}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SongZLYGK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SreekumarBHD11, author = {Janrdanan Sreekumar and Cajo J. F. ter Braak and Roeland C. H. J. van Ham and Aalt D. J. van Dijk}, title = {Correlated mutations via regularized multinomial regression}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {444}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-444}, doi = {10.1186/1471-2105-12-444}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SreekumarBHD11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SrokaBGLLMABMK11, author = {Jacek Sroka and Lukasz Bieniasz{-}Krzywiec and Szymon Gwozdz and Dariusz Leniowski and Jakub Lacki and Mateusz Markowski and Claudio Avignone{-}Rossa and Michael E. Bushell and Johnjoe McFadden and Andrzej M. Kierzek}, title = {Acorn: {A} grid computing system for constraint based modeling and visualization of the genome scale metabolic reaction networks via a web interface}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {196}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-196}, doi = {10.1186/1471-2105-12-196}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/SrokaBGLLMABMK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/StackliesSG11, author = {Wolfram Stacklies and Christian Seifert and Frauke Graeter}, title = {Implementation of Force Distribution Analysis for Molecular Dynamics simulations}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {101}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-101}, doi = {10.1186/1471-2105-12-101}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/StackliesSG11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/StamatakisZ11, author = {Michail Stamatakis and Kyriacos Zygourakis}, title = {Deterministic and stochastic population-level simulations of an artificial lac operon genetic network}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {301}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-301}, doi = {10.1186/1471-2105-12-301}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/StamatakisZ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/StomaFGK11, author = {Szymon Stoma and Martina Fr{\"{o}}hlich and Susanne Gerber and Edda Klipp}, title = {{STSE:} Spatio-Temporal Simulation Environment Dedicated to Biology}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {126}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-126}, doi = {10.1186/1471-2105-12-126}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/StomaFGK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SugayaF11, author = {Nobuyoshi Sugaya and Toshio Furuya}, title = {Dr. {PIAS:} an integrative system for assessing the druggability of protein-protein interactions}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {50}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-50}, doi = {10.1186/1471-2105-12-50}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SugayaF11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SukosdKVKA11, author = {Zsuzsanna S{\"{u}}k{\"{o}}sd and Bjarne Knudsen and Morten Vaerum and J{\o}rgen Kjems and Ebbe Sloth Andersen}, title = {Multithreaded comparative {RNA} secondary structure prediction using stochastic context-free grammars}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {103}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-103}, doi = {10.1186/1471-2105-12-103}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/SukosdKVKA11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SunCYHHL11, author = {Shuying Sun and Zhengyi Chen and Pearlly Yan and Yi{-}Wen Huang and Tim Hui{-}Ming Huang and Shili Lin}, title = {Identifying hypermethylated CpG islands using a quantile regression model}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {54}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-54}, doi = {10.1186/1471-2105-12-54}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SunCYHHL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SykacekKMAFRM11, author = {Peter Sykacek and David P. Kreil and Lisa A. Meadows and Richard P. Auburn and Bettina Fischer and Steven Russell and Gos Micklem}, title = {The impact of quantitative optimization of hybridization conditions on gene expression analysis}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {73}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-73}, doi = {10.1186/1471-2105-12-73}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SykacekKMAFRM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SzczurekMGBTV11, author = {Ewa Szczurek and Florian Markowetz and Irit Gat{-}Viks and Przemyslaw Biecek and Jerzy Tiuryn and Martin Vingron}, title = {Deregulation upon {DNA} damage revealed by joint analysis of context-specific perturbation data}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {249}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-249}, doi = {10.1186/1471-2105-12-249}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SzczurekMGBTV11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TakahashiMOK11, author = {Hiroki Takahashi and Takuya Morimoto and Naotake Ogasawara and Shigehiko Kanaya}, title = {{AMDORAP:} Non-targeted metabolic profiling based on high-resolution {LC-MS}}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {259}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-259}, doi = {10.1186/1471-2105-12-259}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/TakahashiMOK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TangLLXSZC11, author = {Zehui Tang and Tonghua Li and Rida Liu and Wenwei Xiong and Jiangming Sun and Yaojuan Zhu and Guanyan Chen}, title = {Improving the performance of beta-turn prediction using predicted shape strings and a two-layer support vector machine model}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {283}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-283}, doi = {10.1186/1471-2105-12-283}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/TangLLXSZC11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TangLPSPF11, author = {Haibao Tang and Eric Lyons and Brent S. Pedersen and James C. Schnable and Andrew H. Paterson and Michael Freeling}, title = {Screening synteny blocks in pairwise genome comparisons through integer programming}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {102}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-102}, doi = {10.1186/1471-2105-12-102}, timestamp = {Sun, 24 Jul 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/TangLPSPF11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TangWLLCP11, author = {Xiwei Tang and Jianxin Wang and Binbin Liu and Min Li and Gang Chen and Yi Pan}, title = {A comparison of the functional modules identified from time course and static {PPI} network data}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {339}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-339}, doi = {10.1186/1471-2105-12-339}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/TangWLLCP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TangZLC11, author = {Kailin Tang and Ruixin Zhu and Yixue Li and Zhi{-}Wei Cao}, title = {Discrimination of Approved Drugs from Experimental Drugs by Learning Methods}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {157}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-157}, doi = {10.1186/1471-2105-12-157}, timestamp = {Sun, 12 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/TangZLC11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TapiaOBA11, author = {Elizabeth Tapia and Leonardo Ornella and Pilar Bulacio and Laura Angelone}, title = {Multiclass classification of microarray data samples with a reduced number of genes}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {59}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-59}, doi = {10.1186/1471-2105-12-59}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/TapiaOBA11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TataruH11, author = {Paula Tataru and Asger Hobolth}, title = {Comparison of methods for calculating conditional expectations of sufficient statistics for continuous time Markov chains}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {465}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-465}, doi = {10.1186/1471-2105-12-465}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/TataruH11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TeyraSSP11, author = {Joan Teyra and Sergey A. Samsonov and Sven Schreiber and M. Teresa Pisabarro}, title = {{SCOWLP} update: 3D classification of protein-protein, -peptide, -saccharide and -nucleic acid interactions, and structure-based binding inferences across folds}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {398}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-398}, doi = {10.1186/1471-2105-12-398}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/TeyraSSP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ThompsonMMCGLMMPQRSVRA11, author = {Paul Thompson and John McNaught and Simonetta Montemagni and Nicoletta Calzolari and Riccardo Del Gratta and Vivian Lee and Simone Marchi and Monica Monachini and Piotr Pezik and Valeria Quochi and C. J. Rupp and Yutaka Sasaki and Giulia Venturi and Dietrich Rebholz{-}Schuhmann and Sophia Ananiadou}, title = {The BioLexicon: a large-scale terminological resource for biomedical text mining}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {397}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-397}, doi = {10.1186/1471-2105-12-397}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ThompsonMMCGLMMPQRSVRA11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ThompsonNMA11, author = {Paul Thompson and Raheel Nawaz and John McNaught and Sophia Ananiadou}, title = {Enriching a biomedical event corpus with meta-knowledge annotation}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {393}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-393}, doi = {10.1186/1471-2105-12-393}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ThompsonNMA11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TianWCDHJ11, author = {Liqing Tian and Aiping Wu and Yang Cao and Xiaoxi Dong and Yun Hu and Taijiao Jiang}, title = {NCACO-score: An effective main-chain dependent scoring function for structure modeling}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {208}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-208}, doi = {10.1186/1471-2105-12-208}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/TianWCDHJ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ToofannySBD11, author = {Rudesh D. Toofanny and Andrew M. Simms and David A. C. Beck and Valerie Daggett}, title = {Implementation of 3D spatial indexing and compression in a large-scale molecular dynamics simulation database for rapid atomic contact detection}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {334}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-334}, doi = {10.1186/1471-2105-12-334}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ToofannySBD11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TorrentoCSHKN11, author = {Josep Rius and Fernando Cores and Francesc Solsona and Jano I. van Hemert and Jos Koetsier and C{\'{e}}dric Notredame}, title = {A user-friendly web portal for T-Coffee on supercomputers}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {150}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-150}, doi = {10.1186/1471-2105-12-150}, timestamp = {Thu, 29 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/TorrentoCSHKN11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TorresVBGTD11, author = {Clinton Torres and Elizabeth A. Vitalis and Brian R. Baker and Shea N. Gardner and Marisa W. Torres and John M. Dzenitis}, title = {{LAVA:} An Open-Source Approach To Designing {LAMP} (Loop-Mediated Isothermal Amplification) {DNA} Signatures}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {240}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-240}, doi = {10.1186/1471-2105-12-240}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/TorresVBGTD11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TruongGMG11, author = {Cong V. C. Truong and Linn F. Groeneveld and Burkhard Morgenstern and Eildert Groeneveld}, title = {MolabIS - An Integrated Information System for Storing and Managing Molecular Genetics Data}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {425}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-425}, doi = {10.1186/1471-2105-12-425}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/TruongGMG11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TruszkowskiB11, author = {Jakub Truszkowski and Daniel Gregory Brown}, title = {More accurate recombination prediction in {HIV-1} using a robust decoding algorithm for HMMs}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {168}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-168}, doi = {10.1186/1471-2105-12-168}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/TruszkowskiB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TsaiL11, author = {Richard Tzong{-}Han Tsai and Po{-}Ting Lai}, title = {Dynamic programming re-ranking for {PPI} interactor and pair extraction in full-text articles}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {60}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-60}, doi = {10.1186/1471-2105-12-60}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/TsaiL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TsoiQSZ11, author = {Lam C. Tsoi and Tingting Qin and Elizabeth H. Slate and W. Jim Zheng}, title = {Consistent Differential Expression Pattern {(CDEP)} on microarray to identify genes related to metastatic behavior}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {438}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-438}, doi = {10.1186/1471-2105-12-438}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/TsoiQSZ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TsugawaTABF11, author = {Hiroshi Tsugawa and Yuki Tsujimot and Masanori Arita and Takeshi Bamba and Eiichiro Fukusaki}, title = {{GC/MS} Based Metabolomics: Development of a Data Mining System for Metabolite Identification by using Soft Independent Modeling of Class Analogy {(SIMCA)}}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {131}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-131}, doi = {10.1186/1471-2105-12-131}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/TsugawaTABF11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TulpanLBCC11, author = {Dan C. Tulpan and Serge L{\'{e}}ger and Luc Belliveau and Adrian Culf and Miroslava Cuperlovic{-}Culf}, title = {MetaboHunter: an automatic approach for identification of metabolites from 1H-NMR spectra of complex mixtures}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {400}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-400}, doi = {10.1186/1471-2105-12-400}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/TulpanLBCC11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TungZKKH11, author = {Chun{-}Wei Tung and Matthias Ziehm and Andreas K{\"{a}}mper and Oliver Kohlbacher and Shinn{-}Ying Ho}, title = {{POPISK:} T-cell reactivity prediction using support vector machines and string kernels}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {446}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-446}, doi = {10.1186/1471-2105-12-446}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/TungZKKH11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TuszynskaB11, author = {Irina Tuszynska and Janusz M. Bujnicki}, title = {{DARS-RNP} and {QUASI-RNP:} New statistical potentials for protein-RNA docking}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {348}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-348}, doi = {10.1186/1471-2105-12-348}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/TuszynskaB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/UitdehaagZ11, author = {Joost C. M. Uitdehaag and Guido J. R. Zaman}, title = {A theoretical entropy score as a single value to express inhibitor selectivity}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {94}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-94}, doi = {10.1186/1471-2105-12-94}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/UitdehaagZ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/UnterthinerSBMSB11, author = {Thomas Unterthiner and Anne{-}Kathrin Schultz and Jan Bulla and Burkhard Morgenstern and Mario Stanke and Ingo Bulla}, title = {Detection of viral sequence fragments of {HIV-1} subfamilies yet unknown}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {93}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-93}, doi = {10.1186/1471-2105-12-93}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/UnterthinerSBMSB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/UsieKTVFAS11, author = {Anabel Usie and Hiren Karathia and Ivan Teixido and Joan Valls and Xavier Faus and Rui Alves and Francesc Solsona}, title = {Biblio-MetReS: {A} bibliometric network reconstruction application and server}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {387}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-387}, doi = {10.1186/1471-2105-12-387}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/UsieKTVFAS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/VandeweyerRWRK11, author = {Geert Vandeweyer and Edwin Reyniers and Wim Wuyts and Liesbeth Rooms and R. Frank Kooy}, title = {CNV-WebStore: Online {CNV} Analysis, Storage and Interpretation}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {4}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-4}, doi = {10.1186/1471-2105-12-4}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/VandeweyerRWRK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/VisserAVSLS11, author = {Ubbo Visser and Saminda Abeyruwan and Uma Vempati and Robin P. Smith and Vance P. Lemmon and Stephan C. Sch{\"{u}}rer}, title = {BioAssay Ontology {(BAO):} {A} Semantic Description of Bioassays and High-Throughput Screening Results}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {257}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-257}, doi = {10.1186/1471-2105-12-257}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/VisserAVSLS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/VoorripsGV11, author = {Roeland E. Voorrips and Gerrit Gort and Ben Vosman}, title = {Genotype calling in tetraploid species from bi-allelic marker data using mixture models}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {172}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-172}, doi = {10.1186/1471-2105-12-172}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/VoorripsGV11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/VosCHJM11, author = {Rutger A. Vos and Jason Caravas and Klaas Hartmann and Mark A. Jensen and Chase A. Miller}, title = {Bio: : Phylo - phyloinformatic analysis using Perl}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {63}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-63}, doi = {10.1186/1471-2105-12-63}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/VosCHJM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/VrolingTMAVP11, author = {Bas Vroling and David Thorne and Philip McDermott and Teresa K. Attwood and Gert Vriend and Steve Pettifer}, title = {Integrating GPCR-specific information with full text articles}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {362}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-362}, doi = {10.1186/1471-2105-12-362}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/VrolingTMAVP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/VuVSVDLVGL11, author = {Trung{-}Nghia Vu and Dirk Valkenborg and Koen Smets and Kim A. Verwaest and Roger Dommisse and Filip Lemi{\`{e}}re and Alain Verschoren and Bart Goethals and Kris Laukens}, title = {An integrated workflow for robust alignment and simplified quantitative analysis of {NMR} spectrometry data}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {405}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-405}, doi = {10.1186/1471-2105-12-405}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/VuVSVDLVGL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/WangHXCJFLW11, author = {Kai Wang and Fuyan Hu and Kejia Xu and Hua Cheng and Meng Jiang and Ruili Feng and Jing Li and Tieqiao Wen}, title = {CASCADE{\_}SCAN: mining signal transduction network from high-throughput data based on steepest descent method}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {164}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-164}, doi = {10.1186/1471-2105-12-164}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/WangHXCJFLW11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/WangKBM11, author = {Lili Wang and Pouya Khankhanian and Sergio Baranzini and Parvin Mousavi}, title = {iCTNet: {A} Cytoscape plugin to produce and analyze integrative complex traits networks}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {380}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-380}, doi = {10.1186/1471-2105-12-380}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/WangKBM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/WangL11, author = {Hui Wang and Mark J. van der Laan}, title = {Dimension Reduction with Gene Expression Data Using Targeted Variable Importance Measurement}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {312}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-312}, doi = {10.1186/1471-2105-12-312}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/WangL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/WangS11, author = {Xiaosheng Wang and Richard Simon}, title = {Microarray-based Cancer Prediction Using Single Genes}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {391}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-391}, doi = {10.1186/1471-2105-12-391}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/WangS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/WangTLHH11, author = {Jinlian Wang and Manabu Torii and Hongfang Liu and Gerald W. Hart and Zhang{-}Zhi Hu}, title = {dbOGAP - An Integrated Bioinformatics Resource for Protein O-GlcNAcylation}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {91}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-91}, doi = {10.1186/1471-2105-12-91}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/WangTLHH11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/WangWNWLS11, author = {Yulong Wang and Wenjun Wu and Nicolas N. Negre and Kevin P. White and Cheng Li and Parantu K. Shah}, title = {Determinants of Antigenicity and Specificity in immune response for Protein Sequences}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {251}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-251}, doi = {10.1186/1471-2105-12-251}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/WangWNWLS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/WangZ11, author = {Weichen Wang and Xuegong Zhang}, title = {Network-based group variable selection for detecting expression quantitative trait loci (eQTL)}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {269}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-269}, doi = {10.1186/1471-2105-12-269}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/WangZ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/WeinbergB11, author = {Zasha Weinberg and Ronald R. Breaker}, title = {{R2R} - software to speed the depiction of aesthetic consensus {RNA} secondary structures}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {3}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-3}, doi = {10.1186/1471-2105-12-3}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/WeinbergB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/WengMSGPYX11, author = {Lingjie Weng and Fabio Macciardi and Aravind Subramanian and Guia Guffanti and Steven G. Potkin and Zhaoxia Yu and Xiaohui Xie}, title = {SNP-based pathway enrichment analysis for genome-wide association studies}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {99}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-99}, doi = {10.1186/1471-2105-12-99}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/WengMSGPYX11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/WetzelKP11, author = {Joshua L. Wetzel and Carl Kingsford and Mihai Pop}, title = {Assessing the benefits of using mate-pairs to resolve repeats in de novo short-read prokaryotic assemblies}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {95}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-95}, doi = {10.1186/1471-2105-12-95}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/WetzelKP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/WirthLBB11, author = {Henry Wirth and Markus L{\"{o}}ffler and Martin von Bergen and Hans Binder}, title = {Expression cartography of human tissues using self organizing maps}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {306}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-306}, doi = {10.1186/1471-2105-12-306}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/WirthLBB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/WolfsheimerHRH11, author = {Stefan Wolfsheimer and Inke Herms and Sven Rahmann and Alexander K. Hartmann}, title = {Accurate statistics for local sequence alignment with position-dependent scoring by rare-event sampling}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {47}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-47}, doi = {10.1186/1471-2105-12-47}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/WolfsheimerHRH11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/WorthKKK11, author = {Catherine L. Worth and Annika Kreuchwig and Gunnar Kleinau and Gerd Krause}, title = {{GPCR-SSFE:} {A} comprehensive database of G-protein-coupled receptor template predictions and homology models}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {185}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-185}, doi = {10.1186/1471-2105-12-185}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/WorthKKK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/WuWLLR11, author = {Yonggan Wu and Bo Wei and Haizhou Liu and Tianxian Li and Simon Rayner}, title = {MiRPara: a SVM-based software tool for prediction of most probable microRNA coding regions in genome scale sequences}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {107}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-107}, doi = {10.1186/1471-2105-12-107}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/WuWLLR11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/XiaWCZ11, author = {Zheng Xia and Jianguo Wen and Chung{-}Che Chang and Xiaobo Zhou}, title = {{NSMAP:} {A} Method for Spliced Isoforms Identification and Quantification from RNA-Seq}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {162}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-162}, doi = {10.1186/1471-2105-12-162}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/XiaWCZ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/XiaoTLFMHL11, author = {Jiamin Xiao and Xiaojing Tang and Yizhou Li and Zheng Fang and Daichuan Ma and Yangzhige He and Menglong Li}, title = {Identification of microRNA precursors based on random forest with network-level representation method of stem-loop structure}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {165}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-165}, doi = {10.1186/1471-2105-12-165}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/XiaoTLFMHL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/XiePSDZBKPCGSSAKPHGF11, author = {Hongbo M. Xie and Juan C. Perin and Theodore G. Schurr and Matthew C. Dulik and Sergey I. Zhadanov and Joseph A. Baur and Michael P. King and Emily Place and Colleen Clarke and Michael Grauer and Jonathan Schug and Avni Santani and Anthony Albano and Cecilia Kim and Vincent Procaccio and Hakon Hakonarson and Xiaowu Gai and Marni J. Falk}, title = {Mitochondrial Genome Sequence Analysis: {A} custom bioinformatics pipeline substantially improves Affymetrix MitoChip v2.0 call rate and accuracy}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {402}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-402}, doi = {10.1186/1471-2105-12-402}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/XiePSDZBKPCGSSAKPHGF11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/XuHS11, author = {Cheng{-}Jian Xu and Huub C. J. Hoefsloot and Age K. Smilde}, title = {To aggregate or not to aggregate high-dimensional classifiers}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {153}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-153}, doi = {10.1186/1471-2105-12-153}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/XuHS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/XuPFA11, author = {Yaji Xu and Bo Peng and Yunxin Fu and Christopher I. Amos}, title = {Genome-wide algorithm for detecting {CNV} associations with diseases}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {331}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-331}, doi = {10.1186/1471-2105-12-331}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/XuPFA11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/XueDH11, author = {Li C. Xue and Drena Dobbs and Vasant G. Honavar}, title = {HomPPI: {A} Class of Sequence Homology Based Protein-Protein Interface Prediction Methods}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {244}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-244}, doi = {10.1186/1471-2105-12-244}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/XueDH11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/YakhiniJ11, author = {Zohar Yakhini and Igor Jurisica}, title = {Cancer Computational Biology}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {120}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-120}, doi = {10.1186/1471-2105-12-120}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/YakhiniJ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/YanCZ11, author = {Ren{-}Xiang Yan and Zhen Chen and Ziding Zhang}, title = {Outer membrane proteins can be simply identified using secondary structure element alignment}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {76}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-76}, doi = {10.1186/1471-2105-12-76}, timestamp = {Mon, 04 Jan 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/YanCZ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/YangCM11, author = {Jie Yang and Geroge Casella and Lauren M. McIntyre}, title = {Generalized shrinkage F-like statistics for testing an interaction term in gene expression analysis in the presence of heteroscedasticity}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {427}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-427}, doi = {10.1186/1471-2105-12-427}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/YangCM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/YangLDG11, author = {Jialiang Yang and Jun Li and Liuhuan Dong and Stefan Gr{\"{u}}newald}, title = {Analysis on the reconstruction accuracy of the Fitch method for inferring ancestral states}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {18}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-18}, doi = {10.1186/1471-2105-12-18}, timestamp = {Thu, 24 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/YangLDG11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/YangLKCLLWCP11, author = {Hsin{-}Chou Yang and Hsin{-}Chi Lin and Meijyh Kang and Chun{-}Houh Chen and Chien{-}Wei Lin and Ling{-}Hui Li and Jer{-}Yuarn Wu and Yuan{-}Tsong Chen and Wen{-}Harn Pan}, title = {{SAQC:} {SNP} array quality control}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {100}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-100}, doi = {10.1186/1471-2105-12-100}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/YangLKCLLWCP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/YangSK11, author = {Yan Yang and Phillip Stafford and YoonJoo Kim}, title = {Segmentation and intensity estimation for microarray images with saturated pixels}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {462}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-462}, doi = {10.1186/1471-2105-12-462}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/YangSK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/YangWYXTY11, author = {Can Yang and Xiang Wan and Qiang Yang and Hong Xue and Nelson L. S. Tang and Weichuan Yu}, title = {A hidden two-locus disease association pattern in genome-wide association studies}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {156}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-156}, doi = {10.1186/1471-2105-12-156}, timestamp = {Sun, 04 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/YangWYXTY11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/YaoHC11, author = {Cheng{-}Wei Yao and Ban{-}Dar Hsu and Bor{-}Sen Chen}, title = {Constructing gene regulatory networks for long term photosynthetic light acclimation in Arabidopsis thaliana}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {335}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-335}, doi = {10.1186/1471-2105-12-335}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/YaoHC11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/YeCT11, author = {Yuzhen Ye and Jeong{-}Hyeon Choi and Haixu Tang}, title = {RAPSearch: a Fast Protein Similarity Search Tool for Short Reads}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {159}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-159}, doi = {10.1186/1471-2105-12-159}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/YeCT11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/YokR11, author = {Non G. Yok and Gail L. Rosen}, title = {Combining gene prediction methods to improve metagenomic gene annotation}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {20}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-20}, doi = {10.1186/1471-2105-12-20}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/YokR11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/YoshidaK11, author = {Makiko Yoshida and Asako Koike}, title = {SNPInterForest: {A} new method for detecting epistatic interactions}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {469}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-469}, doi = {10.1186/1471-2105-12-469}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/YoshidaK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/YuLYLLL11, author = {Hui Yu and Bao{-}Hong Liu and Zhi{-}Qiang Ye and Chun Li and Yi{-}Xue Li and Yuan{-}Yuan Li}, title = {Link-based Quantitative Methods to Identify Differentially Coexpressed Genes and Gene Pairs}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {315}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-315}, doi = {10.1186/1471-2105-12-315}, timestamp = {Thu, 27 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/YuLYLLL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/YuanCNXTVSK11, author = {Yuan Yuan and Yi{-}Ping Phoebe Chen and Shengyu Ni and Augix Guohua Xu and Lin Tang and Martin Vingron and Mehmet Somel and Philipp Khaitovich}, title = {Development and application of a modified dynamic time warping algorithm {(DTW-S)} to analyses of primate brain expression time series}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {347}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-347}, doi = {10.1186/1471-2105-12-347}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/YuanCNXTVSK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZagordiBEB11, author = {Osvaldo Zagordi and Arnab Bhattacharya and Nicholas Eriksson and Niko Beerenwinkel}, title = {ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {119}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-119}, doi = {10.1186/1471-2105-12-119}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ZagordiBEB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZakiWNK11, author = {Nazar Zaki and Stefan Wolfsheimer and Gr{\'{e}}gory Nuel and Sawsan Khuri}, title = {Conotoxin Protein Classification Using Free Scores of Words and Support Vector Machines}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {217}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-217}, doi = {10.1186/1471-2105-12-217}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ZakiWNK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZeebergLKERBBBLRWP11, author = {Barry Zeeberg and Hongfang Liu and Ari B. Kahn and Martin Ehler and Vinodh N. Rajapakse and Robert F. Bonner and Jacob D. Brown and Brian P. Brooks and Vladimir L. Larionov and William C. Reinhold and John N. Weinstein and Yves Pommier}, title = {RedundancyMiner: De-replication of redundant {GO} categories in microarray and proteomics analysis}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {52}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-52}, doi = {10.1186/1471-2105-12-52}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ZeebergLKERBBBLRWP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZemlaLKAZ11, author = {Adam T. Zemla and Dorothy M. Lang and Tanya Kostova and Raul Andino and Carol L. Ecale Zhou}, title = {StralSV: assessment of sequence variability within similar 3D structures and application to polio RNA-dependent {RNA} polymerase}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {226}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-226}, doi = {10.1186/1471-2105-12-226}, timestamp = {Wed, 25 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ZemlaLKAZ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhangCWXZC11, author = {Bo Zhang and Beibei Chen and Tao Wu and Zhenyu Xuan and Xiaopeng Zhu and Runsheng Chen}, title = {Estimating developmental states of tumors and normal tissues using a linear time-ordered model}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {53}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-53}, doi = {10.1186/1471-2105-12-53}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhangCWXZC11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhangLNPS11, author = {Shaoqiang Zhang and Shan Li and Meng Niu and Phuc T. Pham and Zhengchang Su}, title = {MotifClick: prediction of cis-regulatory binding sites via merging cliques}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {238}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-238}, doi = {10.1186/1471-2105-12-238}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhangLNPS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhangMMCWH11, author = {Jiajie Zhang and Amir Madany Mamlouk and Thomas Martinetz and Suhua Chang and Jing Wang and Rolf Hilgenfeld}, title = {PhyloMap: an algorithm for visualizing relationships of large sequence data sets and its application to the influenza {A} virus genome}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {248}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-248}, doi = {10.1186/1471-2105-12-248}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhangMMCWH11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhangP11, author = {Bailing Zhang and Tuan D. Pham}, title = {Phenotype Recognition with Combined Features and Random Subspace Classifier Ensemble}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {128}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-128}, doi = {10.1186/1471-2105-12-128}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhangP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhangS11, author = {Yuan Zhang and Yanni Sun}, title = {{HMM-FRAME:} accurate protein domain classification for metagenomic sequences in the presence of frameshift errors}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {198}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-198}, doi = {10.1186/1471-2105-12-198}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhangS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhangWBHPD11, author = {Ke Zhang and Haiyan Wang and Arne C. Bathke and Solomon W. Harrar and Hans{-}Peter Piepho and Youping Deng}, title = {Gene set analysis for longitudinal gene expression data}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {273}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-273}, doi = {10.1186/1471-2105-12-273}, timestamp = {Wed, 10 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhangWBHPD11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhangWBZS11, author = {Shenghui Zhang and Yaojun Wang and Dongbo Bu and Hong Zhang and Shiwei Sun}, title = {ProbPS: {A} new model for peak selection based on quantifying the dependence of the existence of derivative peaks on primary ion intensity}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {346}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-346}, doi = {10.1186/1471-2105-12-346}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhangWBZS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhangWH11, author = {Liqing Zhang and Layne T. Watson and Lenwood S. Heath}, title = {A Network of {SCOP} Hidden Markov Models and Its Analysis}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {191}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-191}, doi = {10.1186/1471-2105-12-191}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhangWH11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhangWHFZG11, author = {Changqing Zhang and Jin Wang and Xu Hua and Jinggui Fang and Huaiqiu Zhu and Xiang Gao}, title = {A mutation degree model for the identification of transcriptional regulatory elements}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {262}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-262}, doi = {10.1186/1471-2105-12-262}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhangWHFZG11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhangXZZYL11, author = {Wen Zhang and Yi Xiong and Meng Zhao and Hua Zou and Xinghuo Ye and Juan Liu}, title = {Prediction of conformational B-cell epitopes from 3D structures by random forest with a distance-based feature}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {341}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-341}, doi = {10.1186/1471-2105-12-341}, timestamp = {Mon, 22 Jul 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhangXZZYL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhangZ11, author = {Shannon Zhang and Yaping Zong}, title = {Was the Scanner Calibration Slide Used for Its Intended Purpose?}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {110}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-110}, doi = {10.1186/1471-2105-12-110}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhangZ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhangZ11a, author = {Zhihua Zhang and Michael Q. Zhang}, title = {Histone modification profiles are predictive for tissue/cell-type specific expression of both protein-coding and microRNA genes}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {155}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-155}, doi = {10.1186/1471-2105-12-155}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhangZ11a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhaoGSLT11, author = {Jingyuan Zhao and Simone Gupta and Mark Seielstad and Jianjun Liu and Anbupalam Thalamuthu}, title = {Pathway-based analysis using reduced gene subsets in genome-wide association studies}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {17}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-17}, doi = {10.1186/1471-2105-12-17}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhaoGSLT11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhengCZ11, author = {Wei Zheng and Lisa M. Chung and Hongyu Zhao}, title = {Bias Detection and Correction in RNA-Sequencing Data}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {290}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-290}, doi = {10.1186/1471-2105-12-290}, timestamp = {Tue, 13 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhengCZ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhengZGF11, author = {Yi Zheng and Liangjun Zhao and Junping Gao and Zhangjun Fei}, title = {iAssembler: a package for de novo assembly of Roche-454/Sanger transcriptome sequences}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {453}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-453}, doi = {10.1186/1471-2105-12-453}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhengZGF11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhouN11, author = {Wanding Zhou and Luay Nakhleh}, title = {Properties of Metabolic Graphs: Biological Organization or Representation Artifacts?}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {132}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-132}, doi = {10.1186/1471-2105-12-132}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhouN11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhuSCDLW11, author = {Qian Zhu and Yuyin Sun and Sashikiran Challa and Ying Ding and Michael S. Lajiness and David J. Wild}, title = {Semantic Inference using Chemogenomics Data for Drug Discovery}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {256}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-256}, doi = {10.1186/1471-2105-12-256}, timestamp = {Mon, 21 Feb 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhuSCDLW11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZiaM11, author = {Amin Zia and Alan M. Moses}, title = {Ranking insertion, deletion and nonsense mutations based on their effect on genetic information}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {299}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-299}, doi = {10.1186/1471-2105-12-299}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ZiaM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZimmermannKJ11, author = {Michael T. Zimmermann and Andrzej Kloczkowski and Robert L. Jernigan}, title = {{MAVEN:} Motion Analysis and Visualization of Elastic Networks and Structural Ensembles}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {264}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-264}, doi = {10.1186/1471-2105-12-264}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ZimmermannKJ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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