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@article{DBLP:journals/bmcbi/AbbyTGD10,
author = {Sophie S. Abby and
Eric Tannier and
Manolo Gouy and
Vincent Daubin},
title = {Detecting lateral gene transfers by statistical reconciliation of
phylogenetic forests},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {324},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-324},
doi = {10.1186/1471-2105-11-324},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AbbyTGD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AboWTC10,
author = {Ryan Abo and
Jathine Wong and
Alun Thomas and
Nicola J. Camp},
title = {Haplotype association analyses in resources of mixed structure using
Monte Carlo testing},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {592},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-592},
doi = {10.1186/1471-2105-11-592},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AboWTC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AbrahamKLHZ10,
author = {Gad Abraham and
Adam Kowalczyk and
Sherene Loi and
Izhak Haviv and
Justin Zobel},
title = {Prediction of breast cancer prognosis using gene set statistics provides
signature stability and biological context},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {277},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-277},
doi = {10.1186/1471-2105-11-277},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AbrahamKLHZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AhmadSPMSM10,
author = {Shandar Ahmad and
Yumlembam Hemjit Singh and
Yogesh Paudel and
Takaharu Mori and
Yuji Sugita and
Kenji Mizuguchi},
title = {Integrated prediction of one-dimensional structural features and their
relationships with conformational flexibility in helical membrane
proteins},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {533},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-533},
doi = {10.1186/1471-2105-11-533},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AhmadSPMSM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AiSD10,
author = {Jiye Ai and
Barry Smith and
Wong T. David},
title = {Saliva Ontology: An ontology-based framework for a Salivaomics Knowledge
Base},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {302},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-302},
doi = {10.1186/1471-2105-11-302},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AiSD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Al-ShahibMAFSG10,
author = {Ali Al{-}Shahib and
Raju Misra and
Nadia Ahmod and
Min Fang and
Haroun Shah and
Saheer Gharbia},
title = {Coherent pipeline for biomarker discovery using mass spectrometry
and bioinformatics},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {437},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-437},
doi = {10.1186/1471-2105-11-437},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Al-ShahibMAFSG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AlamanovaSK10,
author = {Denitsa Alamanova and
Philip Stegmaier and
Alexander E. Kel},
title = {Creating PWMs of transcription factors using 3D structure-based computation
of protein-DNA free binding energies},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {225},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-225},
doi = {10.1186/1471-2105-11-225},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AlamanovaSK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AlbayrakOS10,
author = {Aydin Albayrak and
Hasan H. Otu and
Osman Ugur Sezerman},
title = {Clustering of protein families into functional subtypes using Relative
Complexity Measure with reduced amino acid alphabets},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {428},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-428},
doi = {10.1186/1471-2105-11-428},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/AlbayrakOS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AlbertsS10,
author = {Rudi Alberts and
Klaus Schughart},
title = {QTLminer: identifying genes regulating quantitative traits},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {516},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-516},
doi = {10.1186/1471-2105-11-516},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AlbertsS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AldenVB10,
author = {Kieran Alden and
Stella Veretnik and
Philip E. Bourne},
title = {dConsensus: a tool for displaying domain assignments by multiple structure-based
algorithms and for construction of a consensus assignment},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {310},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-310},
doi = {10.1186/1471-2105-11-310},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AldenVB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AllredWWFHTW10,
author = {Adam F. Allred and
Guang Wu and
Tuya Wulan and
Kael F. Fischer and
Michael R. Holbrook and
Robert B. Tesh and
David Wang},
title = {{VIPR:} {A} probabilistic algorithm for analysis of microbial detection
microarrays},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {384},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-384},
doi = {10.1186/1471-2105-11-384},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AllredWWFHTW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AlmeidaDM10,
author = {Jonas S. Almeida and
Helena F. Deus and
Wolfgang Maass},
title = {{S3DB} core: a framework for {RDF} generation and management in bioinformatics
infrastructures},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {387},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-387},
doi = {10.1186/1471-2105-11-387},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AlmeidaDM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AlonsoJTCCBBTM10,
author = {Arnald Alonso and
Antonio Juli{\`{a}} and
Ra{\"{u}}l Tortosa and
Cristina Canaleta and
Juan D. Ca{\~{n}}ete and
Javier Ballina and
Alejandro Balsa and
Jes{\'{u}}s Tornero and
Sara Marsal},
title = {CNstream: {A} method for the identification and genotyping of copy
number polymorphisms using Illumina microarrays},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {264},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-264},
doi = {10.1186/1471-2105-11-264},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AlonsoJTCCBBTM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AlstonSHL10,
author = {Mark J. Alston and
John Seers and
Jay C. D. Hinton and
Sacha Lucchini},
title = {{BABAR:} an {R} package to simplify the normalisation of common reference
design microarray-based transcriptomic datasets},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {73},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-73},
doi = {10.1186/1471-2105-11-73},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AlstonSHL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AlthausCEEKMMTZ10,
author = {Ernst Althaus and
Stefan Canzar and
Carsten Ehrler and
Mark R. Emmett and
Andreas Karrenbauer and
Alan G. Marshall and
Anke Meyer{-}B{\"{a}}se and
Jeremiah D. Tipton and
Huimin Zhang},
title = {Computing H/D-Exchange rates of single residues from data of proteolytic
fragments},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {424},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-424},
doi = {10.1186/1471-2105-11-424},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/AlthausCEEKMMTZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AlvoLWY10,
author = {Mayer Alvo and
Zhongzhu Liu and
Andrew Williams and
Carole L. Yauk},
title = {Testing for mean and correlation changes in microarray experiments:
an application for pathway analysis},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {60},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-60},
doi = {10.1186/1471-2105-11-60},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/AlvoLWY10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AmatoPDMNRC10,
author = {Roberto Amato and
Michele Pinelli and
Daniel D'Andrea and
Gennaro Miele and
Mario Nicodemi and
Giancarlo Raiconi and
Sergio Cocozza},
title = {A novel approach to simulate gene-environment interactions in complex
diseases},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {8},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-8},
doi = {10.1186/1471-2105-11-8},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/AmatoPDMNRC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AnsariR10,
author = {Hifzur Rahman Ansari and
Gajendra P. S. Raghava},
title = {Identification of {NAD} interacting residues in proteins},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {160},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-160},
doi = {10.1186/1471-2105-11-160},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AnsariR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AntonAR10,
author = {Miguel {\'{A}}ngel Ant{\'{o}}n and
Ander Aramburu and
Angel Rubio},
title = {Improvements to previous algorithms to predict gene structure and
isoform concentrations using Affymetrix Exon arrays},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {578},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-578},
doi = {10.1186/1471-2105-11-578},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AntonAR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AnvarHT10,
author = {Seyed Yahya Anvar and
Peter A. C. 't Hoen and
Allan Tucker},
title = {The identification of informative genes from multiple datasets with
increasing complexity},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {32},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-32},
doi = {10.1186/1471-2105-11-32},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AnvarHT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ArabSEPS10,
author = {Shahriar Arab and
Mehdi Sadeghi and
Changiz Eslahchi and
Hamid Pezeshk and
Armita Sheari},
title = {A pairwise residue contact area-based mean force potential for discrimination
of native protein structure},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {16},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-16},
doi = {10.1186/1471-2105-11-16},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ArabSEPS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ArcuriZMBSMAP10,
author = {Helen A. Arcuri and
Geraldo F. D. Zafalon and
Evandro A. Marucci and
Carlos E. Bonalumi and
Nelson Jos{\'{e}} Freitas da Silveira and
Jos{\'{e}} Marcio Machado and
Walter F. de Azevedo Jr. and
M{\'{a}}rio S. Palma},
title = {{SKPDB:} a structural database of shikimate pathway enzymes},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {12},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-12},
doi = {10.1186/1471-2105-11-12},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ArcuriZMBSMAP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ArenasPPV10,
author = {Miguel Arenas and
Mateus Patricio and
David Posada and
Gabriel Valiente},
title = {Characterization of phylogenetic networks with NetTest},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {268},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-268},
doi = {10.1186/1471-2105-11-268},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ArenasPPV10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ArraisFPO10,
author = {Joel Arrais and
Jo{\~{a}}o Fernandes and
Jo{\~{a}}o E. Pereira and
Jos{\'{e}} Lu{\'{\i}}s Oliveira},
title = {GeneBrowser 2: an application to explore and identify common biological
traits in a set of genes},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {389},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-389},
doi = {10.1186/1471-2105-11-389},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ArraisFPO10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AsburyMTZ10,
author = {Thomas M. Asbury and
Matt Mitman and
Jijun Tang and
W. Jim Zheng},
title = {Genome3D: {A} viewer-model framework for integrating and visualizing
multi-scale epigenomic information within a three-dimensional genome},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {444},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-444},
doi = {10.1186/1471-2105-11-444},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AsburyMTZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AswaniKBFKBBT10,
author = {Anil Aswani and
Soile V. E. Ker{\"{a}}nen and
James Brown and
Charless C. Fowlkes and
David W. Knowles and
Mark D. Biggin and
Peter J. Bickel and
Claire J. Tomlin},
title = {Nonparametric identification of regulatory interactions from spatial
and temporal gene expression data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {413},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-413},
doi = {10.1186/1471-2105-11-413},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/AswaniKBFKBBT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AulchenkoSD10,
author = {Yurii S. Aulchenko and
Maksim V. Struchalin and
Cornelia M. van Duijn},
title = {ProbABEL package for genome-wide association analysis of imputed data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {134},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-134},
doi = {10.1186/1471-2105-11-134},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/AulchenkoSD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AussemTMR10,
author = {Alex Aussem and
Andr{\'{e}} Tchernof and
Sergio Rodrigues de Morais and
Sophie Rome},
title = {Analysis of lifestyle and metabolic predictors of visceral obesity
with Bayesian Networks},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {487},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-487},
doi = {10.1186/1471-2105-11-487},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/AussemTMR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AydinMWN10,
author = {Zafer Aydin and
John I. Murray and
Robert H. Waterston and
William Stafford Noble},
title = {Using machine learning to speed up manual image annotation: application
to a 3D imaging protocol for measuring single cell gene expression
in the developing \emph{C. elegans} embryo},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {84},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-84},
doi = {10.1186/1471-2105-11-84},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AydinMWN10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AzulayNO10,
author = {David{-}Olivier D. Azulay and
Hendrik Neubert and
Mireia Fern{\'{a}}ndez Oca{\~{n}}a},
title = {Visualisation tool for peptide fractionation data in proteomics: application
to {OFFGEL} isoelectric focussing},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {371},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-371},
doi = {10.1186/1471-2105-11-371},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AzulayNO10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BaiLLZJWL10,
author = {Fang Bai and
Xiaofeng Liu and
Jiabo Li and
Haoyun Zhang and
Hualiang Jiang and
Xicheng Wang and
Honglin Li},
title = {Bioactive Conformational Generation of Small Molecules: {A} Comparative
Analysis between Force-Field and Multiple Empirical Criteria Based
Methods},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {545},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-545},
doi = {10.1186/1471-2105-11-545},
timestamp = {Tue, 16 Jul 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BaiLLZJWL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BaileyBWM10,
author = {Timothy L. Bailey and
Mikael Bod{\'{e}}n and
Tom Whitington and
Philip Machanick},
title = {The value of position-specific priors in motif discovery using {MEME}},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {179},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-179},
doi = {10.1186/1471-2105-11-179},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BaileyBWM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Bailly-BechetBPWZ10,
author = {Marc Bailly{-}Bechet and
Alfredo Braunstein and
Andrea Pagnani and
Martin Weigt and
Riccardo Zecchina},
title = {Inference of sparse combinatorial-control networks from gene-expression
data: a message passing approach},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {355},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-355},
doi = {10.1186/1471-2105-11-355},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Bailly-BechetBPWZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Baker10,
author = {Stuart G. Baker},
title = {Simple and flexible classification of gene expression microarrays
via Swirls and Ripples},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {452},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-452},
doi = {10.1186/1471-2105-11-452},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Baker10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BakheetD10,
author = {Tala Bakheet and
Andrew J. Doig},
title = {Properties and identification of antibiotic drug targets},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {195},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-195},
doi = {10.1186/1471-2105-11-195},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BakheetD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BandyopadhyayB10,
author = {Sanghamitra Bandyopadhyay and
Malay Bhattacharyya},
title = {PuTmiR: {A} database for extracting neighboring transcription factors
of human microRNAs},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {190},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-190},
doi = {10.1186/1471-2105-11-190},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BandyopadhyayB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BannertWSS10,
author = {Constantin Bannert and
A. Welfle and
C. aus dem Spring and
Dietmar Schomburg},
title = {BrEPS: a flexible and automatic protocol to compute enzyme-specific
sequence profiles for functional annotation},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {589},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-589},
doi = {10.1186/1471-2105-11-589},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BannertWSS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BarbariniM10,
author = {Nicola Barbarini and
Paolo Magni},
title = {Accurate peak list extraction from proteomic mass spectra for identification
and profiling studies},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {518},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-518},
doi = {10.1186/1471-2105-11-518},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BarbariniM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Barbosa-SilvaSMPFASO10,
author = {Adriano Barbosa{-}Silva and
Theodoros G. Soldatos and
Ivan L. F. Magalh{\~{a}}es and
Georgios A. Pavlopoulos and
Jean{-}Fred Fontaine and
Miguel A. Andrade{-}Navarro and
Reinhard Schneider and
Jos{\'{e}} Miguel Ortega},
title = {{LAITOR} - Literature Assistant for Identification of Terms co-Occurrences
and Relationships},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {70},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-70},
doi = {10.1186/1471-2105-11-70},
timestamp = {Wed, 14 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Barbosa-SilvaSMPFASO10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BareKRTB10,
author = {J. Christopher Bare and
Tie Koide and
David J. Reiss and
Dan Tenenbaum and
Nitin S. Baliga},
title = {Integration and visualization of systems biology data in context of
the genome},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {382},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-382},
doi = {10.1186/1471-2105-11-382},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BareKRTB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BarekePGMDBHD10,
author = {Eric Bareke and
Michael Pierre and
Anthoula Gaigneaux and
Bertrand De Meulder and
Sophie Depiereux and
Fabrice Berger and
Naji Habra and
Eric Depiereux},
title = {Correction: PathEx: {A} novel multi factors based datasets selector
web tool},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {541},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-541},
doi = {10.1186/1471-2105-11-541},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BarekePGMDBHD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BarekePGMDHD10,
author = {Eric Bareke and
Michael Pierre and
Anthoula Gaigneaux and
Bertrand De Meulder and
Sophie Depiereux and
Naji Habra and
Eric Depiereux},
title = {PathEx: a novel multi factors based datasets selector web tool},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {528},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-528},
doi = {10.1186/1471-2105-11-528},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BarekePGMDHD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BariamisIM10,
author = {Dimitris G. Bariamis and
Dimitrios K. Iakovidis and
Dimitris Maroulis},
title = {M\({}^{\mbox{3}}\)G: Maximum Margin Microarray Gridding},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {49},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-49},
doi = {10.1186/1471-2105-11-49},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BariamisIM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BarsnesCEM10,
author = {Harald Barsnes and
Richard G. C{\^{o}}t{\'{e}} and
Ingvar Eidhammer and
Lennart Martens},
title = {{OLS} Dialog: An open-source front end to the Ontology Lookup Service},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {34},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-34},
doi = {10.1186/1471-2105-11-34},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BarsnesCEM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BartenhagenKRJD10,
author = {Christoph Bartenhagen and
Hans{-}Ulrich Klein and
Christian Ruckert and
Xiaoyi Jiang and
Martin Dugas},
title = {Comparative study of unsupervised dimension reduction techniques for
the visualization of microarray gene expression data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {567},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-567},
doi = {10.1186/1471-2105-11-567},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BartenhagenKRJD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BasuP10,
author = {Subhadip Basu and
Dariusz Plewczynski},
title = {{AMS} 3.0: prediction of post-translational modifications},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {210},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-210},
doi = {10.1186/1471-2105-11-210},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BasuP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BattkeSN10,
author = {Florian Battke and
Stephan Symons and
Kay Nieselt},
title = {Mayday - integrative analytics for expression data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {121},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-121},
doi = {10.1186/1471-2105-11-121},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BattkeSN10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BauerBB10,
author = {Denis C. Bauer and
Fabian A. Buske and
Timothy L. Bailey},
title = {Dual-functioning transcription factors in the developmental gene network
of \emph{Drosophila melanogaster}},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {366},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-366},
doi = {10.1186/1471-2105-11-366},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BauerBB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BebekPC10,
author = {G{\"{u}}rkan Bebek and
Vishal N. Patel and
Mark R. Chance},
title = {{PETALS:} Proteomic Evaluation and Topological Analysis of a mutated
Locus' Signaling},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {596},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-596},
doi = {10.1186/1471-2105-11-596},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BebekPC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BenabderrahmaneSPND10,
author = {Sidahmed Benabderrahmane and
Malika Sma{\"{\i}}l{-}Tabbone and
Olivier Poch and
Amedeo Napoli and
Marie{-}Dominique Devignes},
title = {IntelliGO: a new vector-based semantic similarity measure including
annotation origin},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {588},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-588},
doi = {10.1186/1471-2105-11-588},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BenabderrahmaneSPND10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BengtssonNS10,
author = {Henrik Bengtsson and
Pierre Neuvial and
Terence P. Speed},
title = {TumorBoost: Normalization of allele-specific tumor copy numbers from
a single pair of tumor-normal genotyping microarrays},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {245},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-245},
doi = {10.1186/1471-2105-11-245},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BengtssonNS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BerettaSRCS10,
author = {Lorenzo Beretta and
Alessandro Santaniello and
Piet L. C. M. van Riel and
Marieke J. H. Coenen and
Raffaella Scorza},
title = {Survival dimensionality reduction {(SDR):} development and clinical
application of an innovative approach to detect epistasis in presence
of right-censored data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {416},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-416},
doi = {10.1186/1471-2105-11-416},
timestamp = {Thu, 25 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BerettaSRCS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BergerMGDBPHDD10,
author = {Fabrice Berger and
Bertrand De Meulder and
Anthoula Gaigneaux and
Sophie Depiereux and
Eric Bareke and
Michael Pierre and
Beno{\^{\i}}t De Hertogh and
Mauro Delorenzi and
Eric Depiereux},
title = {Functional Analysis: Evaluation of Response Intensities - Tailoring
{ANOVA} for Lists of Expression Subsets},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {510},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-510},
doi = {10.1186/1471-2105-11-510},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BergerMGDBPHDD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BertolazziGL10,
author = {Paola Bertolazzi and
Concettina Guerra and
Giampaolo Liuzzi},
title = {A global optimization algorithm for protein surface alignment},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {488},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-488},
doi = {10.1186/1471-2105-11-488},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BertolazziGL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BhattacharjeeB10,
author = {Nicholus Bhattacharjee and
Parbati Biswas},
title = {Statistical analysis and molecular dynamics simulations of ambivalent
\emph{alpha }-helices},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {519},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-519},
doi = {10.1186/1471-2105-11-519},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BhattacharjeeB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BinderKB10,
author = {Hans Binder and
Knut Krohn and
Conrad J. Burden},
title = {Washing scaling of GeneChip microarray expression},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {291},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-291},
doi = {10.1186/1471-2105-11-291},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BinderKB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BiswasNS10,
author = {Ashis Kumer Biswas and
Nasimul Noman and
Abdur Rahman Sikder},
title = {Machine learning approach to predict protein phosphorylation sites
by incorporating evolutionary information},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {273},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-273},
doi = {10.1186/1471-2105-11-273},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BiswasNS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BlagusL10,
author = {Rok Blagus and
Lara Lusa},
title = {Class prediction for high-dimensional class-imbalanced data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {523},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-523},
doi = {10.1186/1471-2105-11-523},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BlagusL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BlangiardoCR10,
author = {Marta Blangiardo and
Alberto Cassese and
Sylvia Richardson},
title = {sdef: an {R} package to synthesize lists of significant features in
related experiments},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {270},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-270},
doi = {10.1186/1471-2105-11-270},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BlangiardoCR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BlumMLC10,
author = {Yuna Blum and
Guillaume Le Mignon and
Sandrine Lagarrigue and
David Causeur},
title = {A factor model to analyze heterogeneity in gene expression},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {368},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-368},
doi = {10.1186/1471-2105-11-368},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BlumMLC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Bordner10,
author = {Andrew J. Bordner},
title = {Orientation-dependent backbone-only residue pair scoring functions
for fixed backbone protein design},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {192},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-192},
doi = {10.1186/1471-2105-11-192},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Bordner10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BordnerM10,
author = {Andrew J. Bordner and
Hans D. Mittelmann},
title = {Prediction of the binding affinities of peptides to class {II} {MHC}
using a regularized thermodynamic model},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {41},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-41},
doi = {10.1186/1471-2105-11-41},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BordnerM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BordnerM10a,
author = {Andrew J. Bordner and
Hans D. Mittelmann},
title = {MultiRTA: {A} simple yet reliable method for predicting peptide binding
affinities for multiple class {II} {MHC} allotypes},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {482},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-482},
doi = {10.1186/1471-2105-11-482},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BordnerM10a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BoulesteixH10,
author = {Anne{-}Laure Boulesteix and
Torsten Hothorn},
title = {Testing the additional predictive value of high-dimensional molecular
data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {78},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-78},
doi = {10.1186/1471-2105-11-78},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BoulesteixH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BremgesSG10,
author = {Andreas Bremges and
Stefanie Schirmer and
Robert Giegerich},
title = {Fine-tuning structural {RNA} alignments in the twilight zone},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {222},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-222},
doi = {10.1186/1471-2105-11-222},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BremgesSG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BremmSBHH10,
author = {Sebastian Bremm and
Tobias Schreck and
Patrick Boba and
Stephanie Held and
Kay Hamacher},
title = {Computing and visually analyzing mutual information in molecular co-evolution},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {330},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-330},
doi = {10.1186/1471-2105-11-330},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BremmSBHH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BruckskottenLCKHKB10,
author = {Marc Bruckskotten and
Mario Looso and
Franz Cemic and
Anne Konzer and
J{\"{u}}rgen Hemberger and
Markus Kruger and
Thomas Braun},
title = {{PCA2GO:} a new multivariate statistics based method to identify highly
expressed GO-Terms},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {336},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-336},
doi = {10.1186/1471-2105-11-336},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BruckskottenLCKHKB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BryantMCFK10,
author = {Drew H. Bryant and
Mark Moll and
Brian Y. Chen and
Viacheslav Fofanov and
Lydia E. Kavraki},
title = {Analysis of substructural variation in families of enzymatic proteins
with applications to protein function prediction},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {242},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-242},
doi = {10.1186/1471-2105-11-242},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BryantMCFK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BuiNBS10,
author = {Quoc{-}Chinh Bui and
Breannd{\'{a}}n {\'{O}} Nuall{\'{a}}in and
Charles A. Boucher and
Peter M. A. Sloot},
title = {Extracting causal relations on {HIV} drug resistance from literature},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {101},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-101},
doi = {10.1186/1471-2105-11-101},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BuiNBS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BulashevskaBE10,
author = {Svetlana Bulashevska and
Alla Bulashevska and
Roland Eils},
title = {Bayesian statistical modelling of human protein interaction network
incorporating protein disorder information},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {46},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-46},
doi = {10.1186/1471-2105-11-46},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BulashevskaBE10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BullardPHD10,
author = {James H. Bullard and
Elizabeth Purdom and
Kasper D. Hansen and
Sandrine Dudoit},
title = {Evaluation of statistical methods for normalization and differential
expression in mRNA-Seq experiments},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {94},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-94},
doi = {10.1186/1471-2105-11-94},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BullardPHD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BurdickCHKLMRRBSB10,
author = {David B. Burdick and
Christopher C. Cavnor and
Jeremy Handcock and
Sarah A. Killcoyne and
Jake Lin and
Bruz Marzolf and
Stephen A. Ramsey and
Hector Rovira and
Ryan Bressler and
Ilya Shmulevich and
John Boyle},
title = {{SEQADAPT:} an adaptable system for the tracking, storage and analysis
of high throughput sequencing experiments},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {377},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-377},
doi = {10.1186/1471-2105-11-377},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BurdickCHKLMRRBSB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CampainY10,
author = {Anna Campain and
Yee Hwa Yang},
title = {Comparison study of microarray meta-analysis methods},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {408},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-408},
doi = {10.1186/1471-2105-11-408},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/CampainY10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CaoDA10,
author = {Minh Duc Cao and
Trevor I. Dix and
Lloyd Allison},
title = {A genome alignment algorithm based on compression},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {599},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-599},
doi = {10.1186/1471-2105-11-599},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CaoDA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CaoFQ10,
author = {Ricardo Cao and
Mario Francisco{-}Fern{\'{a}}ndez and
Emiliano J. Quinto},
title = {A random effect multiplicative heteroscedastic model for bacterial
growth},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {77},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-77},
doi = {10.1186/1471-2105-11-77},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CaoFQ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CaponeNFTBKK10,
author = {Giovanni Capone and
Giuseppe Novello and
Candida Fasano and
Brett Trost and
Mikelis G. Bickis and
Anthony J. Kusalik and
Darja Kanduc},
title = {The oligodeoxynucleotide sequences corresponding to never-expressed
peptide motifs are mainly located in the non-coding strand},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {383},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-383},
doi = {10.1186/1471-2105-11-383},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CaponeNFTBKK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CapriottiM10,
author = {Emidio Capriotti and
Marc A. Mart{\'{\i}}{-}Renom},
title = {Quantifying the relationship between sequence and three-dimensional
structure conservation in {RNA}},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {322},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-322},
doi = {10.1186/1471-2105-11-322},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CapriottiM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CardelliNBF10,
author = {Maurizio Cardelli and
Matteo Nicoli and
Armando Bazzani and
Claudio Franceschi},
title = {Application of Wavelet Packet Transform to detect genetic polymorphisms
by the analysis of inter-Alu {PCR} patterns},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {593},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-593},
doi = {10.1186/1471-2105-11-593},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/CardelliNBF10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CarlssonSAGB10,
author = {Lars Carlsson and
Ola Spjuth and
Samuel E. Adams and
Robert C. Glen and
Scott Boyer},
title = {Use of historic metabolic biotransformation data as a means of anticipating
metabolic sites using MetaPrint2D and Bioclipse},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {362},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-362},
doi = {10.1186/1471-2105-11-362},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CarlssonSAGB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CarrollBM10,
author = {Adam J. Carroll and
Murray R. Badger and
A. Harvey Millar},
title = {The MetabolomeExpress Project: enabling web-based processing, analysis
and transparent dissemination of {GC/MS} metabolomics datasets},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {376},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-376},
doi = {10.1186/1471-2105-11-376},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CarrollBM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CarstensenSWH10,
author = {Lisbeth Carstensen and
Albin Sandelin and
Ole Winther and
Niels Richard Hansen},
title = {Multivariate Hawkes process models of the occurrence of regulatory
elements},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {456},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-456},
doi = {10.1186/1471-2105-11-456},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CarstensenSWH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CeruloEC10,
author = {Luigi Cerulo and
Charles Elkan and
Michele Ceccarelli},
title = {Learning gene regulatory networks from only positive and unlabeled
data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {228},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-228},
doi = {10.1186/1471-2105-11-228},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CeruloEC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChaiTBK10,
author = {High{-}Seng Chai and
Terry M. Therneau and
Kent R. Bailey and
Jean{-}Pierre A. Kocher},
title = {Spatial normalization improves the quality of genotype calling for
Affymetrix {SNP} 6.0 arrays},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {356},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-356},
doi = {10.1186/1471-2105-11-356},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChaiTBK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChainBHPRTN10,
author = {Benjamin Chain and
Helen Bowen and
John Hammond and
Wilfried Posch and
Jane Rasaiyaah and
Jhen Tsang and
Mahdad Noursadeghi},
title = {Error, reproducibility and sensitivity : a pipeline for data processing
of Agilent oligonucleotide expression arrays},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {344},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-344},
doi = {10.1186/1471-2105-11-344},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChainBHPRTN10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChakrabartiLPPTB10,
author = {Saikat Chakrabarti and
Christopher J. Lanczycki and
Anna R. Panchenko and
Teresa M. Przytycka and
Paul A. Thiessen and
Stephen H. Bryant},
title = {State of the art: refinement of multiple sequence alignments},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {3},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-3},
doi = {10.1186/1471-2105-11-3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChakrabartiLPPTB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChanTHZH10,
author = {Yung{-}Kuan Chan and
Meng{-}Hsiun Tsai and
Der{-}Chen Huang and
Zong{-}Han Zheng and
Kun{-}Ding Hung},
title = {Leukocyte Nucleus Segmentation and Nucleus Lobe Counting},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {558},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-558},
doi = {10.1186/1471-2105-11-558},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChanTHZH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChangCCY10,
author = {Hsueh{-}Wei Chang and
Yu{-}Huei Cheng and
Li{-}Yeh Chuang and
Cheng{-}Hong Yang},
title = {SNP-RFLPing 2: an updated and integrated {PCR-RFLP} tool for {SNP}
genotyping},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {173},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-173},
doi = {10.1186/1471-2105-11-173},
timestamp = {Thu, 15 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChangCCY10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChaudharyBWFE10,
author = {Ruchi Chaudhary and
Mukul S. Bansal and
Andr{\'{e}} Wehe and
David Fern{\'{a}}ndez{-}Baca and
Oliver Eulenstein},
title = {iGTP: {A} software package for large-scale gene tree parsimony analysis},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {574},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-574},
doi = {10.1186/1471-2105-11-574},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChaudharyBWFE10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChauhanMR10,
author = {Jagat Singh Chauhan and
Nitish K. Mishra and
Gajendra P. S. Raghava},
title = {Prediction of {GTP} interacting residues, dipeptides and tripeptides
in a protein from its evolutionary information},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {301},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-301},
doi = {10.1186/1471-2105-11-301},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChauhanMR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChenCP10,
author = {Pao{-}Yang Chen and
Shawn Cokus and
Matteo Pellegrini},
title = {{BS} Seeker: precise mapping for bisulfite sequencing},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {203},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-203},
doi = {10.1186/1471-2105-11-203},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChenCP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChenCPZWGHLDC10,
author = {Bo Chen and
Minhua Chen and
John W. Paisley and
Aimee K. Zaas and
Christopher W. Woods and
Geoffrey S. Ginsburg and
Alfred O. Hero III and
Joseph E. Lucas and
David B. Dunson and
Lawrence Carin},
title = {Bayesian Inference of the Number of Factors in Gene-Expression Analysis:
Application to Human Virus Challenge Studies},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {552},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-552},
doi = {10.1186/1471-2105-11-552},
timestamp = {Fri, 02 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChenCPZWGHLDC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChenDJWZDW10,
author = {Bin Chen and
Xiao Dong and
Dazhi Jiao and
Huijun Wang and
Qian Zhu and
Ying Ding and
David J. Wild},
title = {Chem2Bio2RDF: a semantic framework for linking and data mining chemogenomic
and systems chemical biology data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {255},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-255},
doi = {10.1186/1471-2105-11-255},
timestamp = {Mon, 21 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChenDJWZDW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChenFCCL10,
author = {Lei Chen and
Kai{-}Yan Feng and
Yu{-}Dong Cai and
Kuo{-}Chen Chou and
Hai{-}Peng Li},
title = {Predicting the network of substrate-enzyme-product triads by combining
compound similarity and functional domain composition},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {293},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-293},
doi = {10.1186/1471-2105-11-293},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChenFCCL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChenL10,
author = {Peng Chen and
Jinyan Li},
title = {Sequence-based identification of interface residues by an integrative
profile combining hydrophobic and evolutionary information},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {402},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-402},
doi = {10.1186/1471-2105-11-402},
timestamp = {Fri, 16 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChenL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChenLO10,
author = {Shu{-}An Chen and
Tzong{-}Yi Lee and
Yu{-}Yen Ou},
title = {Incorporating significant amino acid pairs to identify O-linked glycosylation
sites on transmembrane proteins and non-transmembrane proteins},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {536},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-536},
doi = {10.1186/1471-2105-11-536},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChenLO10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChenWZLWSHHLTL10,
author = {Lina Chen and
Hong Wang and
Liangcai Zhang and
Wan Li and
Qian Wang and
Yukui Shang and
Yuehan He and
Weiming He and
Xu Li and
Jingxie Tai and
Xia Li},
title = {Uncovering packaging features of co-regulated modules based on human
protein interaction and transcriptional regulatory networks},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {392},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-392},
doi = {10.1186/1471-2105-11-392},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChenWZLWSHHLTL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChengH10,
author = {Chia{-}Ying Cheng and
Yuh{-}Jyh Hu},
title = {Extracting the abstraction pyramid from complex networks},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {411},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-411},
doi = {10.1186/1471-2105-11-411},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChengH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChengLW10,
author = {Tiejun Cheng and
Zhihai Liu and
Renxiao Wang},
title = {A knowledge-guided strategy for improving the accuracy of scoring
functions in binding affinity prediction},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {193},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-193},
doi = {10.1186/1471-2105-11-193},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChengLW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChengTCHCSLWHLH10,
author = {Wei{-}Chung Cheng and
Min{-}Lung Tsai and
Cheng{-}Wei Chang and
Ching{-}Lung Huang and
Chaang{-}Ray Chen and
Wun{-}Yi Shu and
Yun{-}Shien Lee and
Tzu{-}Hao Wang and
Ji{-}Hong Hong and
Chia{-}Yang Li and
Ian C. Hsu},
title = {Microarray meta-analysis database (M\({}^{\mbox{2}}\)DB): a uniformly
pre-processed, quality controlled, and manually curated human clinical
microarray database},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {421},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-421},
doi = {10.1186/1471-2105-11-421},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChengTCHCSLWHLH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChengYCL10,
author = {Chih{-}Hsien Cheng and
Chung{-}Han Yang and
Hsien{-}Tai Chiu and
Chin Lung Lu},
title = {Reconstructing genome trees of prokaryotes using overlapping genes},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {102},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-102},
doi = {10.1186/1471-2105-11-102},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChengYCL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChervonevaLSCWWH10,
author = {Inna Chervoneva and
Yanyan Li and
Stephanie Schulz and
Sean Croker and
Chantell Wilson and
Scott A. Waldman and
Terry Hyslop},
title = {Selection of optimal reference genes for normalization in quantitative
{RT-PCR}},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {253},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-253},
doi = {10.1186/1471-2105-11-253},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChervonevaLSCWWH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChikayamaKTYMYK10,
author = {Eisuke Chikayama and
Atsushi Kurotani and
Takanori Tanaka and
Takashi Yabuki and
Satoshi Miyazaki and
Shigeyuki Yokoyama and
Yutaka Kuroda},
title = {Mathematical model for empirically optimizing large scale production
of soluble protein domains},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {113},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-113},
doi = {10.1186/1471-2105-11-113},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChikayamaKTYMYK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Chou10,
author = {Hui{-}Hsien Chou},
title = {Shared probe design and existing microarray reanalysis using {PICKY}},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {196},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-196},
doi = {10.1186/1471-2105-11-196},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Chou10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChouRC10,
author = {Chun{-}Chi Chou and
M. Rajasekaran and
Chinpan Chen},
title = {An effective approach for generating a three-Cys2His2 zinc-finger-DNA
complex model by docking},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {334},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-334},
doi = {10.1186/1471-2105-11-334},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChouRC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChowZLK10,
author = {Chi Kin Chow and
Hai Long Zhu and
Jessica Lacy and
Winston Patrick Kuo},
title = {Error margin analysis for feature gene extraction},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {241},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-241},
doi = {10.1186/1471-2105-11-241},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChowZLK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChurbanovVH10,
author = {Alexander G. Churbanov and
Igor Vorechovsky and
Chindo Hicks},
title = {A method of predicting changes in human gene splicing induced by genetic
variants in context of cis-acting elements},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {22},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-22},
doi = {10.1186/1471-2105-11-22},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChurbanovVH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CiliaP10,
author = {Elisa Cilia and
Andrea Passerini},
title = {Automatic prediction of catalytic residues by modeling residue structural
neighborhood},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {115},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-115},
doi = {10.1186/1471-2105-11-115},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CiliaP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ClarkDM10,
author = {Jennifer I. Deegan and
Emily C. Dimmer and
Christopher J. Mungall},
title = {Formalization of taxon-based constraints to detect inconsistencies
in annotation and ontology development},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {530},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-530},
doi = {10.1186/1471-2105-11-530},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ClarkDM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CoarfaYMCHM10,
author = {Cristian Coarfa and
Fuli Yu and
Christopher A. Miller and
Zuozhou Chen and
R. Alan Harris and
Aleksandar Milosavljevic},
title = {Pash 3.0: {A} versatile software package for read mapping and integrative
analysis of genomic and epigenomic variation using massively parallel
{DNA} sequencing},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {572},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-572},
doi = {10.1186/1471-2105-11-572},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/CoarfaYMCHM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CohenJVRH10,
author = {K. Bretonnel Cohen and
Helen L. Johnson and
Karin Verspoor and
Christophe Roeder and
Lawrence Hunter},
title = {The structural and content aspects of abstracts versus bodies of full
text journal articles are different},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {492},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-492},
doi = {10.1186/1471-2105-11-492},
timestamp = {Thu, 17 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CohenJVRH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CollinsSV10,
author = {Stuart Collins and
Michail Stamatakis and
Dionisios G. Vlachos},
title = {Adaptive coarse-grained Monte Carlo simulation of reaction and diffusion
dynamics in heterogeneous plasma membranes},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {218},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-218},
doi = {10.1186/1471-2105-11-218},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CollinsSV10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ColvinMGHHP10,
author = {Joshua Colvin and
Michael I. Monine and
Ryan N. Gutenkunst and
William S. Hlavacek and
Daniel D. Von Hoff and
Richard G. Posner},
title = {RuleMonkey: software for stochastic simulation of rule-based models},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {404},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-404},
doi = {10.1186/1471-2105-11-404},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ColvinMGHHP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CorblinFT10,
author = {Fabien Corblin and
Eric Fanchon and
Laurent Trilling},
title = {Applications of a formal approach to decipher discrete genetic networks},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {385},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-385},
doi = {10.1186/1471-2105-11-385},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CorblinFT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CorelPLGDD10,
author = {Eduardo Corel and
Florian Pitschi and
Ivan Laprevotte and
Gilles Grasseau and
Gilles Didier and
Claudine Devauchelle},
title = {{MS4} - Multi-Scale Selector of Sequence Signatures: An alignment-free
method for classification of biological sequences},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {406},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-406},
doi = {10.1186/1471-2105-11-406},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CorelPLGDD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CornuetRE10,
author = {Jean{-}Marie Cornuet and
Virgine Ravign{\'{e}} and
Arnaud Estoup},
title = {Inference on population history and model checking using {DNA} sequence
and microsatellite data with the software {DIYABC} (v1.0)},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {401},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-401},
doi = {10.1186/1471-2105-11-401},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CornuetRE10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CosgroveGK10,
author = {Elissa J. Cosgrove and
Timothy S. Gardner and
Eric D. Kolaczyk},
title = {On the Choice and Number of Microarrays for Transcriptional Regulatory
Network Inference},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {454},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-454},
doi = {10.1186/1471-2105-11-454},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CosgroveGK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CoxPB10,
author = {Murray P. Cox and
Daniel A. Peterson and
Patrick J. Biggs},
title = {SolexaQA: At-a-glance quality assessment of Illumina second-generation
sequencing data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {485},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-485},
doi = {10.1186/1471-2105-11-485},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CoxPB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Cui10,
author = {Hong Cui},
title = {Semantic annotation of morphological descriptions: an overall strategy},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {278},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-278},
doi = {10.1186/1471-2105-11-278},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Cui10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CuiWCBW10,
author = {Xiaoqi Cui and
Tong Wang and
Huann{-}Sheng Chen and
Victor Busov and
Hairong Wei},
title = {TF-finder: {A} software package for identifying transcription factors
involved in biological processes using microarray data and existing
knowledge base},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {425},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-425},
doi = {10.1186/1471-2105-11-425},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CuiWCBW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CzwanBK10,
author = {Esteban Czwan and
Benedikt Brors and
David Kipling},
title = {Modelling p-value distributions to improve theme-driven survival analysis
of cancer transcriptome datasets},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {19},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-19},
doi = {10.1186/1471-2105-11-19},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CzwanBK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DailyRCXB10,
author = {Kenny Daily and
Paul Rigor and
Scott Christley and
Xiaohui Xie and
Pierre Baldi},
title = {Data structures and compression algorithms for high-throughput sequencing
technologies},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {514},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-514},
doi = {10.1186/1471-2105-11-514},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DailyRCXB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DaknaHKCKSHVMG10,
author = {Mohammed Dakna and
Keith Harris and
Alexandros Kalousis and
Sebastien Carpentier and
Walter Kolch and
Joost P. Schanstra and
Marion Haubitz and
Antonia Vlahou and
Harald Mischak and
Mark A. Girolami},
title = {Addressing the Challenge of Defining Valid Proteomic Biomarkers and
Classifiers},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {594},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-594},
doi = {10.1186/1471-2105-11-594},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DaknaHKCKSHVMG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DalePK10,
author = {Joseph M. Dale and
Liviu Popescu and
Peter D. Karp},
title = {Machine learning methods for metabolic pathway prediction},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {15},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-15},
doi = {10.1186/1471-2105-11-15},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DalePK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DattaPD10,
author = {Susmita Datta and
Vasyl Pihur and
Somnath Datta},
title = {An adaptive optimal ensemble classifier via bagging and rank aggregation
with applications to high dimensional data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {427},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-427},
doi = {10.1186/1471-2105-11-427},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DattaPD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DaveyES10,
author = {Norman E. Davey and
Richard J. Edwards and
Denis C. Shields},
title = {Estimation and efficient computation of the true probability of recurrence
of short linear protein sequence motifs in unrelated proteins},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {14},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-14},
doi = {10.1186/1471-2105-11-14},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DaveyES10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DavidCP10,
author = {Maria Pamela C. David and
Gisela P. Concepcion and
Eduardo A. Padlan},
title = {Using simple artificial intelligence methods for predicting amyloidogenesis
in antibodies},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {79},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-79},
doi = {10.1186/1471-2105-11-79},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DavidCP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DavisSR10,
author = {Melissa J. Davis and
Muhammad Shoaib B. Sehgal and
Mark A. Ragan},
title = {Automatic, context-specific generation of Gene Ontology slims},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {498},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-498},
doi = {10.1186/1471-2105-11-498},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DavisSR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DawanyT10,
author = {Noor B. Dawany and
Aydin T{\"{o}}zeren},
title = {Asymmetric microarray data produces gene lists highly predictive of
research literature on multiple cancer types},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {483},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-483},
doi = {10.1186/1471-2105-11-483},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DawanyT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DayarianMS10,
author = {Adel Dayarian and
Todd P. Michael and
Anirvan M. Sengupta},
title = {{SOPRA:} Scaffolding algorithm for paired reads via statistical optimization},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {345},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-345},
doi = {10.1186/1471-2105-11-345},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DayarianMS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DeianaG10,
author = {Antonio Deiana and
Andrea Giansanti},
title = {Predictors of natively unfolded proteins: unanimous consensus score
to detect a twilight zone between order and disorder in generic datasets},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {198},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-198},
doi = {10.1186/1471-2105-11-198},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DeianaG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Diez-RiveroLR10,
author = {Carmen M. Diez{-}Rivero and
Esther M. Lafuente and
Pedro A. Reche},
title = {Computational analysis and modeling of cleavage by the immunoproteasome
and the constitutive proteasome},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {479},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-479},
doi = {10.1186/1471-2105-11-479},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Diez-RiveroLR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DiszACOOVSE10,
author = {Terry Disz and
Sajia Akhter and
Daniel Cuevas and
Robert Olson and
Ross A. Overbeek and
Veronika Vonstein and
Rick Stevens and
Robert A. Edwards},
title = {Accessing the {SEED} genome databases via Web services {API:} tools
for programmers},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {319},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-319},
doi = {10.1186/1471-2105-11-319},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DiszACOOVSE10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DittmarRR10,
author = {John C. Dittmar and
Robert J. D. Reid and
Rodney Rothstein},
title = {ScreenMill: {A} freely available software suite for growth measurement,
analysis and visualization of high-throughput screen data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {353},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-353},
doi = {10.1186/1471-2105-11-353},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DittmarRR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DoEKB10,
author = {Long H. Do and
Francisco F. Esteves and
Harvey J. Karten and
Ethan Bier},
title = {Booly: a new data integration platform},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {513},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-513},
doi = {10.1186/1471-2105-11-513},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DoEKB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DodererYR10,
author = {Mark Doderer and
Kihoon Yoon and
Kay A. Robbins},
title = {{SIDEKICK:} Genomic data driven analysis and decision-making framework},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {611},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-611},
doi = {10.1186/1471-2105-11-611},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DodererYR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DuZHJKHL10,
author = {Pan Du and
Xiao Zhang and
Chiang{-}Ching Huang and
Nadereh Jafari and
Warren A. Kibbe and
Lifang Hou and
Simon M. Lin},
title = {Comparison of Beta-value and M-value methods for quantifying methylation
levels by microarray analysis},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {587},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-587},
doi = {10.1186/1471-2105-11-587},
timestamp = {Tue, 09 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/DuZHJKHL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DuarteSSFL10,
author = {Jose M. Duarte and
Rajagopal Sathyapriya and
Henning Stehr and
Ioannis Filippis and
Michael Lappe},
title = {Optimal contact definition for reconstruction of Contact Maps},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {283},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-283},
doi = {10.1186/1471-2105-11-283},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/DuarteSSFL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DuncanSMP10,
author = {Stacy Duncan and
Ruchita Sirkanungo and
Leslie Miller and
Gregory J. Phillips},
title = {DraGnET: Software for storing, managing and analyzing annotated draft
genome sequence data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {100},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-100},
doi = {10.1186/1471-2105-11-100},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DuncanSMP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DurandHC10,
author = {Pierre M. Durand and
Scott Hazelhurst and
Theresa L. Coetzer},
title = {Evolutionary rates at codon sites may be used to align sequences and
infer protein domain function},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {151},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-151},
doi = {10.1186/1471-2105-11-151},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/DurandHC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/EdwardsAL10,
author = {David Edwards and
Gabriel C. G. de Abreu and
Rodrigo Labouriau},
title = {Selecting high-dimensional mixed graphical models using minimal {AIC}
or {BIC} forests},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {18},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-18},
doi = {10.1186/1471-2105-11-18},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/EdwardsAL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/EijkENCMWO10,
author = {Ronald van Eijk and
Paul H. C. Eilers and
Remco Natt{\'{e}} and
Anne{-}Marie Cleton{-}Jansen and
Hans Morreau and
Tom van Wezel and
Jan Oosting},
title = {\emph{MLPAinter for {MLPA} interpretation: }an integrated approach
for the analysis, visualisation and data management of Multiplex Ligation-dependent
Probe Amplification},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {67},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-67},
doi = {10.1186/1471-2105-11-67},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/EijkENCMWO10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/EklundSW10,
author = {Martin Eklund and
Ola Spjuth and
Jarl E. S. Wikberg},
title = {An eScience-Bayes strategy for analyzing omics data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {282},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-282},
doi = {10.1186/1471-2105-11-282},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/EklundSW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/EllisHDSW10,
author = {Jonathan J. Ellis and
Fabien P. E. Huard and
Charlotte M. Deane and
Sheenal Srivastava and
Graham R. Wood},
title = {Directionality in protein fold prediction},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {172},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-172},
doi = {10.1186/1471-2105-11-172},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/EllisHDSW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/EmanueleG10,
author = {Vincent A. Emanuele II and
Brian M. Gurbaxani},
title = {Quadratic variance models for adaptively preprocessing {SELDI-TOF}
mass spectrometry data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {512},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-512},
doi = {10.1186/1471-2105-11-512},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/EmanueleG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/EngreitzMDCTAB10,
author = {Jesse M. Engreitz and
Alexander A. Morgan and
Joel Dudley and
Rong Chen and
Rahul Thathoo and
Russ B. Altman and
Atul J. Butte},
title = {Content-based microarray search using differential expression profiles},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {603},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-603},
doi = {10.1186/1471-2105-11-603},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/EngreitzMDCTAB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/EnsteroALWFOL10,
author = {Mats Enster{\"{o}} and
{\"{O}}rjan {\AA}kerborg and
Daniel Lundin and
Bei Wang and
Terrence S. Furey and
Marie {\"{O}}hman and
Jens Lagergren},
title = {A computational screen for site selective A-to-I editing detects novel
sites in neuron specific Hu proteins},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {6},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-6},
doi = {10.1186/1471-2105-11-6},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/EnsteroALWFOL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/EvansHP10,
author = {Steven N. Evans and
Valerie Hower and
Lior Pachter},
title = {Coverage statistics for sequence census methods},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {430},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-430},
doi = {10.1186/1471-2105-11-430},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/EvansHP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FalguerasLFCPC10,
author = {Juan Falgueras and
Antonio J. Lara and
No{\'{e}} Fern{\'{a}}ndez{-}Pozo and
Francisco R. Cant{\'{o}}n and
Guillermo P{\'{e}}rez{-}Trabado and
M. Gonzalo Claros},
title = {SeqTrim: a high-throughput pipeline for pre-processing any type of
sequence read},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {38},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-38},
doi = {10.1186/1471-2105-11-38},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FalguerasLFCPC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FasoldSB10,
author = {Mario Fasold and
Peter F. Stadler and
Hans Binder},
title = {G-stack modulated probe intensities on expression arrays - sequence
corrections and signal calibration},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {207},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-207},
doi = {10.1186/1471-2105-11-207},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FasoldSB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FengKJ10,
author = {Yaping Feng and
Andrzej Kloczkowski and
Robert L. Jernigan},
title = {Potentials 'R'Us web-server for protein energy estimations with coarse-grained
knowledge-based potentials},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {92},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-92},
doi = {10.1186/1471-2105-11-92},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FengKJ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FerrerDK10,
author = {Luciana Ferrer and
Joseph M. Dale and
Peter D. Karp},
title = {A systematic study of genome context methods: calibration, normalization
and combination},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {493},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-493},
doi = {10.1186/1471-2105-11-493},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FerrerDK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FinakPWG10,
author = {Greg Finak and
Juan{-}Manuel Perez and
Andrew Weng and
Raphael Gottardo},
title = {Optimizing Transformations for Automated, High Throughput Analysis
of Flow Cytometry Data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {546},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-546},
doi = {10.1186/1471-2105-11-546},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FinakPWG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FinkFCPWNQB10,
author = {J. Lynn Fink and
Pablo Fernicola and
Rahul Chandran and
Savas Parastatidis and
Alex D. Wade and
Oscar Naim and
Greg B. Quinn and
Philip E. Bourne},
title = {Word add-in for ontology recognition: semantic enrichment of scientific
literature},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {103},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-103},
doi = {10.1186/1471-2105-11-103},
timestamp = {Thu, 19 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FinkFCPWNQB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FlorezPBKKMEM10,
author = {Andr{\'{e}}s F. Fl{\'{o}}rez and
Daeui Park and
Jong Bhak and
Byoung{-}Chul Kim and
Allan Kuchinsky and
John H. Morris and
Jairo Espinosa and
Carlos Muskus},
title = {Protein network prediction and topological analysis in \emph{Leishmania
major }as a tool for drug target selection},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {484},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-484},
doi = {10.1186/1471-2105-11-484},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FlorezPBKKMEM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FokkensBBS10,
author = {Like Fokkens and
Sandra M. C. Botelho and
Jos Boekhorst and
Berend Snel},
title = {Enrichment of homologs in insignificant {BLAST} hits by co-complex
network alignment},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {86},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-86},
doi = {10.1186/1471-2105-11-86},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/FokkensBBS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ForerSWHKGWSKK10,
author = {Lukas Forer and
Sebastian Sch{\"{o}}nherr and
Hansi Wei{\ss}ensteiner and
Florian Haider and
Thomas Kluckner and
Christian Gieger and
Heinz{-}Erich Wichmann and
G{\"{u}}nther Specht and
Florian Kronenberg and
Anita Kloss{-}Brandst{\"{a}}tter},
title = {{CONAN:} copy number variation analysis software for genome-wide association
studies},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {318},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-318},
doi = {10.1186/1471-2105-11-318},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ForerSWHKGWSKK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Francis-LyonGHAK10,
author = {Patricia Francis{-}Lyon and
Shengyin Gu and
Joel Hass and
Nina Amenta and
Patrice Koehl},
title = {Sampling the conformation of protein surface residues for flexible
protein docking},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {575},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-575},
doi = {10.1186/1471-2105-11-575},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Francis-LyonGHAK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FrenkelPMFK10,
author = {Zeev Frenkel and
Etienne Paux and
David I. Mester and
Catherine Feuillet and
Abraham B. Korol},
title = {{LTC:} a novel algorithm to improve the efficiency of contig assembly
for physical mapping in complex genomes},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {584},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-584},
doi = {10.1186/1471-2105-11-584},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/FrenkelPMFK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FreudenbergSWM10,
author = {Johannes M. Freudenberg and
Siva Sivaganesan and
Michael Wagner and
Mario Medvedovic},
title = {A semi-parametric Bayesian model for unsupervised differential co-expression
analysis},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {234},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-234},
doi = {10.1186/1471-2105-11-234},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FreudenbergSWM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FreyhultLOHR10,
author = {Eva Freyhult and
Mattias Landfors and
Jenny {\"{O}}nskog and
Torgeir R. Hvidsten and
Patrik Ryd{\'{e}}n},
title = {Challenges in microarray class discovery: a comprehensive examination
of normalization, gene selection and clustering},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {503},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-503},
doi = {10.1186/1471-2105-11-503},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FreyhultLOHR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FriardRTBC10,
author = {Olivier Friard and
Angela Re and
Daniela Taverna and
Michele De Bortoli and
Davide Cor{\`{a}}},
title = {CircuitsDB: a database of mixed microRNA/transcription factor feed-forward
regulatory circuits in human and mouse},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {435},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-435},
doi = {10.1186/1471-2105-11-435},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/FriardRTBC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FrithHH10,
author = {Martin C. Frith and
Michiaki Hamada and
Paul Horton},
title = {Parameters for accurate genome alignment},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {80},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-80},
doi = {10.1186/1471-2105-11-80},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FrithHH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GaiPMODWXRSW10,
author = {Xiaowu Gai and
Juan C. Perin and
Kevin Murphy and
Ryan O'Hara and
Monica D'arcy and
Adam Wenocur and
Hongbo M. Xie and
Eric F. Rappaport and
Tamim H. Shaikh and
Peter S. White},
title = {{CNV} Workshop: an integrated platform for high-throughput copy number
variation discovery and clinical diagnostics},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {74},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-74},
doi = {10.1186/1471-2105-11-74},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GaiPMODWXRSW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GanguliMBRMD10,
title = {Retraction: In silico screening of herbal and nanoparticle lead compounds
for effectivity against H5N1, {H1N1} neuraminidase and telomerase},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {258},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-258},
doi = {10.1186/1471-2105-11-258},
timestamp = {Tue, 08 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GanguliMBRMD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Garcia-AlcaldeBS10,
author = {Fernando Garc{\'{\i}}a{-}Alcalde and
Armando Blanco and
Adrian J. Shepherd},
title = {An intuitionistic approach to scoring {DNA} sequences against transcription
factor binding site motifs},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {551},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-551},
doi = {10.1186/1471-2105-11-551},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Garcia-AlcaldeBS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Garcia-GarciaGAPO10,
author = {Javier Garc{\'{\i}}a{-}Garc{\'{\i}}a and
Emre Guney and
Ramon Aragues and
Joan Planas{-}Iglesias and
Baldo Oliva},
title = {Biana: a software framework for compiling biological interactions
and analyzing networks},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {56},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-56},
doi = {10.1186/1471-2105-11-56},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Garcia-GarciaGAPO10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Garcia-RemesalCLLCIPCMM10,
author = {Miguel Garc{\'{\i}}a{-}Remesal and
Alejandro Cuevas and
Victoria L{\'{o}}pez{-}Alonso and
Guillermo L{\'{o}}pez{-}Campos and
Guillermo de la Calle and
Diana de la Iglesia and
David P{\'{e}}rez{-}Rey and
Jos{\'{e}} Crespo and
Fernando Mart{\'{\i}}n{-}S{\'{a}}nchez and
Victor Maojo},
title = {A method for automatically extracting infectious disease-related primers
and probes from the literature},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {410},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-410},
doi = {10.1186/1471-2105-11-410},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Garcia-RemesalCLLCIPCMM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GargTR10,
author = {Aarti Garg and
Rupinder Tewari and
Gajendra P. S. Raghava},
title = {K\emph{i}DoQ: using docking based energy scores to develop ligand
based model for predicting antibacterials},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {125},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-125},
doi = {10.1186/1471-2105-11-125},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GargTR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GaujouxS10,
author = {Renaud Gaujoux and
Cathal Seoighe},
title = {A flexible {R} package for nonnegative matrix factorization},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {367},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-367},
doi = {10.1186/1471-2105-11-367},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GaujouxS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GeifmanMR10,
author = {Nophar Geifman and
Alon Monsonego and
Eitan Rubin},
title = {The Neural/Immune Gene Ontology: clipping the Gene Ontology for neurological
and immunological systems},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {458},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-458},
doi = {10.1186/1471-2105-11-458},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GeifmanMR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GeorgeLTCDW10,
author = {Nysia I. George and
Joanne R. Lupton and
Nancy D. Turner and
Robert S. Chapkin and
Laurie A. Davidson and
Naisyin Wang},
title = {Evaluation of fecal mRNA reproducibility via a marginal transformed
mixture modeling approach},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {13},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-13},
doi = {10.1186/1471-2105-11-13},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GeorgeLTCDW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GeorgiCS10,
author = {Benjamin Georgi and
Ivan Gesteira Costa and
Alexander Schliep},
title = {PyMix - The Python mixture package - a tool for clustering of heterogeneous
biological data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {9},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-9},
doi = {10.1186/1471-2105-11-9},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GeorgiCS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GernerNB10,
author = {Martin Gerner and
Goran Nenadic and
Casey M. Bergman},
title = {{LINNAEUS:} {A} species name identification system for biomedical
literature},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {85},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-85},
doi = {10.1186/1471-2105-11-85},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GernerNB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GiangrecoNCCGB10,
author = {Ilenia Giangreco and
Orazio Nicolotti and
Angelo Carotti and
Francesco De Carlo and
Gianfranco Gargano and
Roberto Bellotti},
title = {Analysis of X-ray Structures of Matrix Metalloproteinases via Chaotic
Map Clustering},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {500},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-500},
doi = {10.1186/1471-2105-11-500},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GiangrecoNCCGB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GillDD10,
author = {Ryan Gill and
Somnath Datta and
Susmita Datta},
title = {A statistical framework for differential network analysis from microarray
data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {95},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-95},
doi = {10.1186/1471-2105-11-95},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GillDD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GiombiniOCT10,
author = {Emanuela Giombini and
Massimiliano Orsini and
Danilo Carrabino and
Anna Tramontano},
title = {An automatic method for identifying surface proteins in bacteria:
{SLEP}},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {39},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-39},
doi = {10.1186/1471-2105-11-39},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GiombiniOCT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GiorgiBLU10,
author = {Federico M. Giorgi and
Anthony M. Bolger and
Marc Lohse and
Bj{\"{o}}rn Usadel},
title = {Algorithm-driven Artifacts in median polish summarization of Microarray
data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {553},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-553},
doi = {10.1186/1471-2105-11-553},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GiorgiBLU10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GiorgiFAPKB10,
author = {Elena E. Giorgi and
Bob Funkhouser and
Gayathri Athreya and
Alan S. Perelson and
Bette T. Korber and
Tanmoy Bhattacharya},
title = {Estimating time since infection in early homogeneous {HIV-1} samples
using a poisson model},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {532},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-532},
doi = {10.1186/1471-2105-11-532},
timestamp = {Fri, 23 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GiorgiFAPKB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GlaabBKV10,
author = {Enrico Glaab and
Ana{\"{\i}}s Baudot and
Natalio Krasnogor and
Alfonso Valencia},
title = {Extending pathways and processes using molecular interaction networks
to analyse cancer genome data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {597},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-597},
doi = {10.1186/1471-2105-11-597},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GlaabBKV10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GongWZZCGZWZG10,
author = {Xue Gong and
Ruihong Wu and
Yuannv Zhang and
Wenyuan Zhao and
Lixin Cheng and
Yunyan Gu and
Lin Zhang and
Jing Wang and
Jing Zhu and
Zheng Guo},
title = {Extracting consistent knowledge from highly inconsistent cancer gene
data sources},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {76},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-76},
doi = {10.1186/1471-2105-11-76},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GongWZZCGZWZG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GonzalezL10,
author = {Alvaro J. Gonz{\'{a}}lez and
Li Liao},
title = {Predicting domain-domain interaction based on domain profiles with
feature selection and support vector machines},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {537},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-537},
doi = {10.1186/1471-2105-11-537},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GonzalezL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GoodswenGWK10,
author = {Stephen J. Goodswen and
Cedric Gondro and
Nathan S. Watson{-}Haigh and
Haja N. Kadarmideen},
title = {FunctSNP: an {R} package to link SNPs to functional knowledge and
dbAutoMaker: a suite of Perl scripts to build {SNP} databases},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {311},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-311},
doi = {10.1186/1471-2105-11-311},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GoodswenGWK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GornerupJ10,
author = {Olof G{\"{o}}rnerup and
Martin Nilsson Jacobi},
title = {A model-independent approach to infer hierarchical codon substitution
dynamics},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {201},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-201},
doi = {10.1186/1471-2105-11-201},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GornerupJ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GottliebVLH10,
author = {Assaf Gottlieb and
Roy Varshavsky and
Michal Linial and
David Horn},
title = {UFFizi: a generic platform for ranking informative features},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {300},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-300},
doi = {10.1186/1471-2105-11-300},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GottliebVLH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GracyC10,
author = {J{\'{e}}r{\^{o}}me Gracy and
Laurent Chiche},
title = {Optimizing structural modeling for a specific protein scaffold: knottins
or inhibitor cystine knots},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {535},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-535},
doi = {10.1186/1471-2105-11-535},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GracyC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GrayGYL10,
author = {Donald M. Gray and
Carla W. Gray and
Byong{-}Hoon Yoo and
Tzu{-}Fang Lou},
title = {Antisense {DNA} parameters derived from next-nearest-neighbor analysis
of experimental data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {252},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-252},
doi = {10.1186/1471-2105-11-252},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GrayGYL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GruenertILLHD10,
author = {Gerd Gruenert and
Bashar Ibrahim and
Thorsten Lenser and
Maiko Lohel and
Thomas Hinze and
Peter Dittrich},
title = {Rule-based spatial modeling with diffusing, geometrically constrained
molecules},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {307},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-307},
doi = {10.1186/1471-2105-11-307},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GruenertILLHD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GudmundssonT10,
author = {Steinn Gudmundsson and
Ines Thiele},
title = {Computationally efficient flux variability analysis},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {489},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-489},
doi = {10.1186/1471-2105-11-489},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GudmundssonT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Guerra-AssuncaoE10,
author = {Jos{\'{e}} Afonso Guerra{-}Assun{\c{c}}{\~{a}}o and
Anton J. Enright},
title = {MapMi: automated mapping of microRNA loci},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {133},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-133},
doi = {10.1186/1471-2105-11-133},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Guerra-AssuncaoE10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GuharoyC10,
author = {Mainak Guharoy and
Pinak Chakrabarti},
title = {Conserved residue clusters at protein-protein interfaces and their
use in binding site identification},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {286},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-286},
doi = {10.1186/1471-2105-11-286},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GuharoyC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GuoGMB10,
author = {Yu Guo and
Armin Graber and
Robert N. McBurney and
Raji Balasubramanian},
title = {Sample size and statistical power considerations in high-dimensionality
data settings: a comparative study of classification algorithms},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {447},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-447},
doi = {10.1186/1471-2105-11-447},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GuoGMB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GuptaGAA10,
author = {Rashi Gupta and
Dario Greco and
Petri Auvinen and
Elja Arjas},
title = {Bayesian integrated modeling of expression data: a case study on RhoG},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {295},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-295},
doi = {10.1186/1471-2105-11-295},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GuptaGAA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GurtowskiCSLGHS10,
author = {James Gurtowski and
Anthony Cancio and
Hardik Shah and
Chaya Levovitz and
Ajish George and
Robert Homann and
Ravi Sachidanandam},
title = {Geoseq: a tool for dissecting deep-sequencing datasets},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {506},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-506},
doi = {10.1186/1471-2105-11-506},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GurtowskiCSLGHS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GuzziC10,
author = {Pietro Hiram Guzzi and
Mario Cannataro},
title = {mu-CS: An extension of the {TM4} platform to manage Affymetrix binary
data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {315},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-315},
doi = {10.1186/1471-2105-11-315},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GuzziC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HaanPSVBBW10,
author = {Jorn R. de Haan and
Ester Piek and
Ren{\'{e}} C. van Schaik and
Jacob de Vlieg and
Susanne Bauerschmidt and
Lutgarde M. C. Buydens and
Ron Wehrens},
title = {Integrating gene expression and {GO} classification for {PCA} by preclustering},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {158},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-158},
doi = {10.1186/1471-2105-11-158},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HaanPSVBBW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HamadaSA10,
author = {Michiaki Hamada and
Kengo Sato and
Kiyoshi Asai},
title = {Prediction of {RNA} secondary structure by maximizing pseudo-expected
accuracy},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {586},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-586},
doi = {10.1186/1471-2105-11-586},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HamadaSA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HanSWB10,
author = {Lianyi Han and
Tugba O. Suzek and
Yanli Wang and
Steve H. Bryant},
title = {The Text-mining based PubChem Bioassay neighboring analysis},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {549},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-549},
doi = {10.1186/1471-2105-11-549},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HanSWB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HankelnBFKYG10,
author = {Wolfgang Hankeln and
Pier Luigi Buttigieg and
Dennis Fink and
Renzo Kottmann and
Pelin Yilmaz and
Frank Oliver Gl{\"{o}}ckner},
title = {MetaBar - a tool for consistent contextual data acquisition and standards
compliant submission},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {358},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-358},
doi = {10.1186/1471-2105-11-358},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HankelnBFKYG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Hao10,
author = {Weilong Hao},
title = {OrgConv: detection of gene conversion using consensus sequences and
its application in plant mitochondrial and chloroplast homologs},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {114},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-114},
doi = {10.1186/1471-2105-11-114},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Hao10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HaoMZG10,
author = {Tong Hao and
Hongwu Ma and
Xue{-}Ming Zhao and
Igor Goryanin},
title = {Compartmentalization of the Edinburgh Human Metabolic Network},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {393},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-393},
doi = {10.1186/1471-2105-11-393},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HaoMZG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HappelMKD10,
author = {Patrick Happel and
Kerstin Moller and
Ralf Kunz and
Irmgard D. Dietzel},
title = {A boundary delimitation algorithm to approximate cell soma volumes
of bipolar cells from topographical data obtained by scanning probe
microscopy},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {323},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-323},
doi = {10.1186/1471-2105-11-323},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HappelMKD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HaraSO10,
author = {Toshihide Hara and
Keiko Sato and
Masanori Ohya},
title = {{MTRAP:} Pairwise sequence alignment algorithm by a new measure based
on transition probability between two consecutive pairs of residues},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {235},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-235},
doi = {10.1186/1471-2105-11-235},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HaraSO10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HardcastleK10,
author = {Thomas J. Hardcastle and
Krystyna A. Kelly},
title = {baySeq: Empirical Bayesian methods for identifying differential expression
in sequence count data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {422},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-422},
doi = {10.1186/1471-2105-11-422},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HardcastleK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HarderBPFJH10,
author = {Tim Harder and
Wouter Boomsma and
Martin Paluszewski and
Jes Frellsen and
Kristoffer E. Johansson and
Thomas Hamelryck},
title = {Beyond rotamers: a generative, probabilistic model of side chains
in proteins},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {306},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-306},
doi = {10.1186/1471-2105-11-306},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HarderBPFJH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HartmanRMLE10,
author = {Amber L. Hartman and
Sean Riddle and
Timothy M. McPhillips and
Bertram Lud{\"{a}}scher and
Jonathan A. Eisen},
title = {{WATERS:} a Workflow for the Alignment, Taxonomy, and Ecology of Ribosomal
Sequences},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {317},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-317},
doi = {10.1186/1471-2105-11-317},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HartmanRMLE10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HartspergerBST10,
author = {Mara L. Hartsperger and
Florian Bl{\"{o}}chl and
Volker St{\"{u}}mpflen and
Fabian J. Theis},
title = {Structuring heterogeneous biological information using fuzzy clustering
of k-partite graphs},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {522},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-522},
doi = {10.1186/1471-2105-11-522},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HartspergerBST10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HawariM10,
author = {Aliah Hazmah Hawari and
Zeti{-}Azura Mohamed{-}Hussein},
title = {Simulation of a Petri net-based Model of the Terpenoid Biosynthesis
Pathway},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {83},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-83},
doi = {10.1186/1471-2105-11-83},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HawariM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HawkinsCK10,
author = {Troy Hawkins and
Meghana Chitale and
Daisuke Kihara},
title = {Functional enrichment analyses and construction of functional similarity
networks with high confidence function prediction by {PFP}},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {265},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-265},
doi = {10.1186/1471-2105-11-265},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HawkinsCK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HeMSWL10,
author = {Sheng He and
Juan Mei and
Guiyang Shi and
Zhengxiang Wang and
Weijiang Li},
title = {LucidDraw: Efficiently visualizing complex biochemical networks within
{MATLAB}},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {31},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-31},
doi = {10.1186/1471-2105-11-31},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HeMSWL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HeSLCZS10,
author = {Xin He and
Moushumi Sen Sarma and
Xu Ling and
Brant W. Chee and
Chengxiang Zhai and
Bruce R. Schatz},
title = {Identifying overrepresented concepts in gene lists from literature:
a statistical approach based on Poisson mixture model},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {272},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-272},
doi = {10.1186/1471-2105-11-272},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HeSLCZS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HedlundJP10,
author = {Joel Hedlund and
Hans J{\"{o}}rnvall and
Bengt Persson},
title = {Subdivision of the {MDR} superfamily of medium-chain dehydrogenases/reductases
through iterative hidden Markov model refinement},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {534},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-534},
doi = {10.1186/1471-2105-11-534},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HedlundJP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HeiderVH10,
author = {Dominik Heider and
Jens Verheyen and
Daniel Hoffmann},
title = {Predicting Bevirimat resistance of {HIV-1} from genotype},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {37},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-37},
doi = {10.1186/1471-2105-11-37},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HeiderVH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HeinenTS10,
author = {Stephanie Heinen and
Bernhard Thielen and
Dietmar Schomburg},
title = {{KID} - an algorithm for fast and efficient text mining used to automatically
generate a database containing kinetic information of enzymes},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {375},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-375},
doi = {10.1186/1471-2105-11-375},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HeinenTS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HelaersM10,
author = {Rapha{\"{e}}l Helaers and
Michel C. Milinkovitch},
title = {MetaPIGA v2.0: maximum likelihood large phylogeny estimation using
the metapopulation genetic algorithm and other stochastic heuristics},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {379},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-379},
doi = {10.1186/1471-2105-11-379},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HelaersM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HellwigHSGSR10,
author = {Birte Hellwig and
Jan G. Hengstler and
Marcus Schmidt and
Mathias C. Gehrmann and
Wiebke Schormann and
J{\"{o}}rg Rahnenf{\"{u}}hrer},
title = {Comparison of scores for bimodality of gene expression distributions
and genome-wide evaluation of the prognostic relevance of high-scoring
genes},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {276},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-276},
doi = {10.1186/1471-2105-11-276},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HellwigHSGSR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HelmuthPS10,
author = {Jo A. Helmuth and
Gr{\'{e}}gory Paul and
Ivo F. Sbalzarini},
title = {Beyond co-localization: inferring spatial interactions between sub-cellular
structures from microscopy images},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {372},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-372},
doi = {10.1186/1471-2105-11-372},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HelmuthPS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HenkelEPNW10,
author = {Ron Henkel and
Lukas Endler and
Andr{\'{e}} Peters and
Nicolas Le Nov{\`{e}}re and
Dagmar Waltemath},
title = {Ranked retrieval of Computational Biology models},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {423},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-423},
doi = {10.1186/1471-2105-11-423},
timestamp = {Mon, 13 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HenkelEPNW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HennegesLDBKZ10,
author = {Carsten Henneges and
Pavel Laskov and
Endang Darmawan and
Juergen Backhaus and
Bernd Kammerer and
Andreas Zell},
title = {A factorization method for the classification of infrared spectra},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {561},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-561},
doi = {10.1186/1471-2105-11-561},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HennegesLDBKZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HertoghMBPBGD10,
author = {Beno{\^{\i}}t De Hertogh and
Bertrand De Meulder and
Fabrice Berger and
Michael Pierre and
Eric Bareke and
Anthoula Gaigneaux and
Eric Depiereux},
title = {A benchmark for statistical microarray data analysis that preserves
actual biological and technical variance},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {17},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-17},
doi = {10.1186/1471-2105-11-17},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HertoghMBPBGD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HildebrandtDRBSTMSNMLK10,
author = {Andreas Hildebrandt and
Anna Katharina Dehof and
Alexander Rurainski and
Andreas Bertsch and
Marcel Schumann and
Nora C. Toussaint and
Andreas Moll and
Daniel St{\"{o}}ckel and
Stefan Nickels and
Sabine C. Mueller and
Hans{-}Peter Lenhof and
Oliver Kohlbacher},
title = {{BALL} - biochemical algorithms library 1.3},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {531},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-531},
doi = {10.1186/1471-2105-11-531},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HildebrandtDRBSTMSNMLK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HoehndorfODKRH10,
author = {Robert Hoehndorf and
Anika Oellrich and
Michel Dumontier and
Janet Kelso and
Dietrich Rebholz{-}Schuhmann and
Heinrich Herre},
title = {Relations as patterns: bridging the gap between {OBO} and {OWL}},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {441},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-441},
doi = {10.1186/1471-2105-11-441},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HoehndorfODKRH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HoffgaardWH10,
author = {Franziska Hoffgaard and
Philipp Weil and
Kay Hamacher},
title = {BioPhysConnectoR: Connecting Sequence Information and Biophysical
Models},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {199},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-199},
doi = {10.1186/1471-2105-11-199},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HoffgaardWH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HoffmannZVS10,
author = {Brice Hoffmann and
Mikhail Zaslavskiy and
Jean{-}Philippe Vert and
V{\'{e}}ronique Stoven},
title = {A new protein binding pocket similarity measure based on comparison
of clouds of atoms in 3D: application to ligand prediction},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {99},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-99},
doi = {10.1186/1471-2105-11-99},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HoffmannZVS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HolmMFK10,
author = {Kristian Holm and
Espen Melum and
Andre Franke and
Tom H. Karlsen},
title = {SNPexp - {A} web tool for calculating and visualizing correlation
between HapMap genotypes and gene expression levels},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {600},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-600},
doi = {10.1186/1471-2105-11-600},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HolmMFK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HomerNM10,
author = {Nils Homer and
Stanley F. Nelson and
Barry Merriman},
title = {Local alignment of generalized k-base encoded {DNA} sequence},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {347},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-347},
doi = {10.1186/1471-2105-11-347},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HomerNM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HoranSG10,
author = {Kevin Horan and
Christian R. Shelton and
Thomas Girke},
title = {Predicting conserved protein motifs with Sub-HMMs},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {205},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-205},
doi = {10.1186/1471-2105-11-205},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HoranSG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HorstPIBLVEOB10,
author = {Eelke van der Horst and
Julio E. Peironcely and
Adriaan P. IJzerman and
Margot W. Beukers and
Jonathan Robert Lane and
Herman W. T. van Vlijmen and
Michael T. M. Emmerich and
Yasushi Okuno and
Andreas Bender},
title = {A novel chemogenomics analysis of {G} protein-coupled receptors (GPCRs)
and their ligands: a potential strategy for receptor de-orphanization},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {316},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-316},
doi = {10.1186/1471-2105-11-316},
timestamp = {Tue, 31 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HorstPIBLVEOB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HovikC10,
author = {Hedda H{\o}vik and
Tsute Chen},
title = {Dynamic probe selection for studying microbial transcriptome with
high-density genomic tiling microarrays},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {82},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-82},
doi = {10.1186/1471-2105-11-82},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HovikC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HsiaoLHF10,
author = {Ching{-}Lin Hsiao and
Ie{-}Bin Lian and
Ai{-}Ru Hsieh and
Cathy S. J. Fann},
title = {Modeling expression quantitative trait loci in data combining ethnic
populations},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {111},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-111},
doi = {10.1186/1471-2105-11-111},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HsiaoLHF10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HueRVN10,
author = {Martial Hue and
Michael Riffle and
Jean{-}Philippe Vert and
William Stafford Noble},
title = {Large-scale prediction of protein-protein interactions from structures},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {144},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-144},
doi = {10.1186/1471-2105-11-144},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HueRVN10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuenR10,
author = {David S. Huen and
Steven Russell},
title = {On the use of resampling tests for evaluating statistical significance
of binding-site co-occurrence},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {359},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-359},
doi = {10.1186/1471-2105-11-359},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HuenR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Huerta-CepasDG10,
author = {Jaime Huerta{-}Cepas and
Joaqu{\'{\i}}n Dopazo and
Toni Gabald{\'{o}}n},
title = {{ETE:} a python Environment for Tree Exploration},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {24},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-24},
doi = {10.1186/1471-2105-11-24},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Huerta-CepasDG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuiB10,
author = {Shirley Hui and
Gary D. Bader},
title = {Proteome scanning to predict {PDZ} domain interactions using support
vector machines},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {507},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-507},
doi = {10.1186/1471-2105-11-507},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HuiB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HulsmanMSDBR10,
author = {Marc Hulsman and
Anouk Mentink and
Eugene P. van Someren and
Koen J. Dechering and
Jan de Boer and
Marcel J. T. Reinders},
title = {Delineation of amplification, hybridization and location effects in
microarray data yields better-quality normalization},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {156},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-156},
doi = {10.1186/1471-2105-11-156},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HulsmanMSDBR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HussinNLL10,
author = {Julie Hussin and
Philippe Nadeau and
Jean{-}Fran{\c{c}}ois Lefebvre and
Damian Labuda},
title = {Haplotype allelic classes for detecting ongoing positive selection},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {65},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-65},
doi = {10.1186/1471-2105-11-65},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HussinNLL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HwangSYY10,
author = {Taeho Hwang and
Choong{-}Hyun Sun and
Taegyun Yun and
Gwan{-}Su Yi},
title = {FiGS: a filter-based gene selection workbench for microarray data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {50},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-50},
doi = {10.1186/1471-2105-11-50},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HwangSYY10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HyattCLLLH10,
author = {Doug Hyatt and
Gwo{-}Liang Chen and
Philip F. LoCascio and
Miriam L. Land and
Frank W. Larimer and
Loren J. Hauser},
title = {Prodigal: prokaryotic gene recognition and translation initiation
site identification},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {119},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-119},
doi = {10.1186/1471-2105-11-119},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HyattCLLLH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/IerselPKGHHCE10,
author = {Martijn P. van Iersel and
Alexander R. Pico and
Thomas Kelder and
Jianjiong Gao and
Isaac Ho and
Kristina Hanspers and
Bruce R. Conklin and
Chris T. A. Evelo},
title = {The BridgeDb framework: standardized access to gene, protein and metabolite
identifier mapping services},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {5},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-5},
doi = {10.1186/1471-2105-11-5},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/IerselPKGHHCE10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/IlinkinYJ10,
author = {Ivaylo Ilinkin and
Jieping Ye and
Ravi Janardan},
title = {Multiple structure alignment and consensus identification for proteins},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {71},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-71},
doi = {10.1186/1471-2105-11-71},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/IlinkinYJ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/IllergardCE10,
author = {Kristoffer Illerg{\aa}rd and
Simone Callegari and
Arne Elofsson},
title = {{MPRAP:} An accessibility predictor for alpha-helical transmembrane
proteins that performs well inside and outside the membrane},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {333},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-333},
doi = {10.1186/1471-2105-11-333},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/IllergardCE10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ImamuraYSIT10,
author = {Haruna Imamura and
Nozomu Yachie and
Rintaro Saito and
Yasushi Ishihama and
Masaru Tomita},
title = {Towards the systematic discovery of signal transduction networks using
phosphorylation dynamics data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {232},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-232},
doi = {10.1186/1471-2105-11-232},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ImamuraYSIT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ItersonBM10,
author = {Maarten van Iterson and
Judith M. Boer and
Ren{\'{e}}e X. de Menezes},
title = {Filtering, {FDR} and power},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {450},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-450},
doi = {10.1186/1471-2105-11-450},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ItersonBM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/IvanovskaSHDDDHL10,
author = {Tetyana Ivanovska and
Andrea Schenk and
Andr{\'{e}} Homeyer and
Meihong Deng and
Uta Dahmen and
Olaf Dirsch and
Horst K. Hahn and
Lars Linsen},
title = {A fast and robust hepatocyte quantification algorithm including vein
processing},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {124},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-124},
doi = {10.1186/1471-2105-11-124},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/IvanovskaSHDDDHL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JabadoCQHPHBL10,
author = {Omar J. Jabado and
Sean Conlan and
Phenix{-}Lan Quan and
Jeffrey Hui and
Gustavo F. Palacios and
Mady Hornig and
Thomas Briese and
W. Ian Lipkin},
title = {Nonparametric methods for the analysis of single-color pathogen microarrays},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {354},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-354},
doi = {10.1186/1471-2105-11-354},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JabadoCQHPHBL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JacobsenKKL10,
author = {Anders Jacobsen Skanderup and
Anders Krogh and
Sakari Kauppinen and
Morten Lindow},
title = {miRMaid: a unified programming interface for microRNA data resources},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {29},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-29},
doi = {10.1186/1471-2105-11-29},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JacobsenKKL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JainB10,
author = {Shobhit Jain and
Gary D. Bader},
title = {An improved method for scoring protein-protein interactions using
semantic similarity within the Gene Ontology},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {562},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-562},
doi = {10.1186/1471-2105-11-562},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JainB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JainH10,
author = {Pooja Jain and
Jonathan D. Hirst},
title = {Automatic structure classification of small proteins using random
forest},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {364},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-364},
doi = {10.1186/1471-2105-11-364},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JainH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JaniABA10,
author = {Saurin D. Jani and
Gary L. Argraves and
Jeremy L. Barth and
W. Scott Argraves},
title = {GeneMesh: a web-based microarray analysis tool for relating differentially
expressed genes to MeSH terms},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {166},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-166},
doi = {10.1186/1471-2105-11-166},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JaniABA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JayaramanS10,
author = {Gayathri Jayaraman and
Rahul Siddharthan},
title = {Sigma-2: Multiple sequence alignment of non-coding {DNA} via an evolutionary
model},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {464},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-464},
doi = {10.1186/1471-2105-11-464},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JayaramanS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JeffriesPG10,
author = {Clark D. Jeffries and
Diana O. Perkins and
Xiaojun Guan},
title = {Gene processing control loops suggested by sequencing, splicing, and
{RNA} folding},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {602},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-602},
doi = {10.1186/1471-2105-11-602},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/JeffriesPG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JenkinsonZG10,
author = {W. Garrett Jenkinson and
Xiaogang Zhong and
John Goutsias},
title = {Thermodynamically consistent Bayesian analysis of closed biochemical
reaction systems},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {547},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-547},
doi = {10.1186/1471-2105-11-547},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JenkinsonZG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JiaCRWD10,
author = {Ming Jia and
Suh{-}Yeon Choi and
Dirk Reiners and
Eve Syrkin Wurtele and
Julie A. Dickerson},
title = {MetNetGE: interactive views of biological networks and ontologies},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {469},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-469},
doi = {10.1186/1471-2105-11-469},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JiaCRWD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JohanssonT10,
author = {Fredrik Johansson and
Hiroyuki Toh},
title = {A comparative study of conservation and variation scores},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {388},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-388},
doi = {10.1186/1471-2105-11-388},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JohanssonT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JohnsonEP10,
author = {L. Steven Johnson and
Sean R. Eddy and
Elon Portugaly},
title = {Hidden Markov model speed heuristic and iterative {HMM} search procedure},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {431},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-431},
doi = {10.1186/1471-2105-11-431},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JohnsonEP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JolleyM10,
author = {Keith A. Jolley and
Martin C. J. Maiden},
title = {BIGSdb: Scalable analysis of bacterial genome variation at the population
level},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {595},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-595},
doi = {10.1186/1471-2105-11-595},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JolleyM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JungYST10,
author = {Jaehee Jung and
Gangman Yi and
Serenella A. Sukno and
Michael R. Thon},
title = {PoGO: Prediction of Gene Ontology terms for fungal proteins},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {215},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-215},
doi = {10.1186/1471-2105-11-215},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/JungYST10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KainkaryamBGSW10,
author = {Raghunandan M. Kainkaryam and
Angela Bruex and
Anna C. Gilbert and
John Schiefelbein and
Peter J. Woolf},
title = {poolMC: Smart pooling of mRNA samples in microarray experiments},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {299},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-299},
doi = {10.1186/1471-2105-11-299},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KainkaryamBGSW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KallbergL10,
author = {Morten K{\"{a}}llberg and
Hui Lu},
title = {An improved machine learning protocol for the identification of correct
Sequest search results},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {591},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-591},
doi = {10.1186/1471-2105-11-591},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KallbergL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KalyoncuKG10,
author = {Sibel Kalyoncu and
Ozlem Keskin and
Attila G{\"{u}}rsoy},
title = {Interaction prediction and classification of {PDZ} domains},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {357},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-357},
doi = {10.1186/1471-2105-11-357},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KalyoncuKG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KantorovitzRGU10,
author = {Miriam R. Kantorovitz and
Zoi Rapti and
Vladimir Gelev and
Anny Usheva},
title = {Computing {DNA} duplex instability profiles efficiently with a two-state
model: trends of promoters and binding sites},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {604},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-604},
doi = {10.1186/1471-2105-11-604},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KantorovitzRGU10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KeilwagenGPG10,
author = {Jens Keilwagen and
Jan Grau and
Stefan Posch and
Ivo Grosse},
title = {Apples and oranges: avoiding different priors in Bayesian {DNA} sequence
analysis},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {149},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-149},
doi = {10.1186/1471-2105-11-149},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KeilwagenGPG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KeilwagenGPSG10,
author = {Jens Keilwagen and
Jan Grau and
Stefan Posch and
Marc Strickert and
Ivo Grosse},
title = {Unifying generative and discriminative learning principles},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {98},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-98},
doi = {10.1186/1471-2105-11-98},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KeilwagenGPSG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KelleyS10,
author = {David R. Kelley and
Steven L. Salzberg},
title = {Clustering metagenomic sequences with interpolated Markov models},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {544},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-544},
doi = {10.1186/1471-2105-11-544},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KelleyS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KellyS10,
author = {William P. Kelly and
Michael P. H. Stumpf},
title = {Trees on networks: resolving statistical patterns of phylogenetic
similarities among interacting proteins},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {470},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-470},
doi = {10.1186/1471-2105-11-470},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KellyS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KhatkarHNSNR10,
author = {Mehar S. Khatkar and
Matthew Hobbs and
Markus Neuditschko and
Johann S{\"{o}}lkner and
Frank W. Nicholas and
Herman W. Raadsma},
title = {Assignment of chromosomal locations for unassigned SNPs/scaffolds
based on pair-wise linkage disequilibrium estimates},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {171},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-171},
doi = {10.1186/1471-2105-11-171},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KhatkarHNSNR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KhuranaGM10,
author = {Pankaj Khurana and
Rajesh S. Gokhale and
Debasisa Mohanty},
title = {Genome scale prediction of substrate specificity for acyl adenylate
superfamily of enzymes based on active site residue profiles},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {57},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-57},
doi = {10.1186/1471-2105-11-57},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KhuranaGM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimALPK10,
author = {Ji Woong Kim and
Yongju Ahn and
Kichan Lee and
Sung{-}Hee Park and
Sangsoo Kim},
title = {A classification approach for genotyping viral sequences based on
multidimensional scaling and linear discriminant analysis},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {434},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-434},
doi = {10.1186/1471-2105-11-434},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KimALPK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimBL10,
author = {Changhoon Kim and
Jodi Basner and
Byungkook Lee},
title = {Detecting internally symmetric protein structures},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {303},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-303},
doi = {10.1186/1471-2105-11-303},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KimBL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimJ10,
author = {Taeho Kim and
Hyun Joo},
title = {\emph{ClustalXeed}: a GUI-based grid computation version for high
performance and terabyte size multiple sequence alignment},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {467},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-467},
doi = {10.1186/1471-2105-11-467},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KimJ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimLXP10,
author = {Tae{-}Min Kim and
Lovelace J. Luquette and
Ruibin Xi and
Peter J. Park},
title = {rSW-seq: Algorithm for detection of copy number alterations in deep
sequencing data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {432},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-432},
doi = {10.1186/1471-2105-11-432},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KimLXP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimS10,
author = {Jaebum Kim and
Saurabh Sinha},
title = {Towards realistic benchmarks for multiple alignments of non-coding
sequences},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {54},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-54},
doi = {10.1186/1471-2105-11-54},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KimS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimSABSGK10,
author = {Kyoung Ae Kim and
Sabrina L. Spencer and
John G. Albeck and
John M. Burke and
Peter K. Sorger and
Suzanne Gaudet and
Do Hyun Kim},
title = {Systematic calibration of a cell signaling network model},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {202},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-202},
doi = {10.1186/1471-2105-11-202},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KimSABSGK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimT10,
author = {Jongkwang Kim and
Kai Tan},
title = {Discover Protein Complexes in Protein-Protein Interaction Networks
Using Parametric Local Modularity},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {521},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-521},
doi = {10.1186/1471-2105-11-521},
timestamp = {Wed, 09 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KimT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimYYP10,
author = {Seonho Kim and
Juntae Yoon and
Jihoon Yang and
Seog Park},
title = {Walk-weighted subsequence kernels for protein-protein interaction
extraction},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {107},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-107},
doi = {10.1186/1471-2105-11-107},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KimYYP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimoriBM10,
author = {Yoshitaka Kimori and
Norio Baba and
Nobuhiro Morone},
title = {Extended morphological processing: a practical method for automatic
spot detection of biological markers from microscopic images},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {373},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-373},
doi = {10.1186/1471-2105-11-373},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KimoriBM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KingsfordSP10,
author = {Carl Kingsford and
Michael C. Schatz and
Mihai Pop},
title = {Assembly complexity of prokaryotic genomes using short reads},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {21},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-21},
doi = {10.1186/1471-2105-11-21},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KingsfordSP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KirillovaTC10,
author = {Svetlana Kirillova and
Silvio C. E. Tosatto and
Oliviero Carugo},
title = {{FRASS:} the web-server for {RNA} structural comparison},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {327},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-327},
doi = {10.1186/1471-2105-11-327},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KirillovaTC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KlammerGTS10,
author = {Martin Klammer and
Klaus Godl and
Andreas Tebbe and
Christoph Schaab},
title = {Identifying differentially regulated subnetworks from phosphoproteomic
data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {351},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-351},
doi = {10.1186/1471-2105-11-351},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KlammerGTS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KoestlerHE10,
author = {Tina Koestler and
Arndt von Haeseler and
Ingo Ebersberger},
title = {{FACT:} Functional annotation transfer between proteins with similar
feature architectures},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {417},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-417},
doi = {10.1186/1471-2105-11-417},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KoestlerHE10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KohlD10,
author = {Matthias Kohl and
Hans{-}Peter Deigner},
title = {Preprocessing of gene expression data by optimally robust estimators},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {583},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-583},
doi = {10.1186/1471-2105-11-583},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KohlD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KojimaNM10,
author = {Kaname Kojima and
Masao Nagasaki and
Satoru Miyano},
title = {An efficient biological pathway layout algorithm combining grid-layout
and spring embedder for complicated cellular location information},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {335},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-335},
doi = {10.1186/1471-2105-11-335},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KojimaNM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KomoriE10,
author = {Osamu Komori and
Shinto Eguchi},
title = {A boosting method for maximizing the partial area under the {ROC}
curve},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {314},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-314},
doi = {10.1186/1471-2105-11-314},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KomoriE10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KorenMWS10,
author = {Sergey Koren and
Jason R. Miller and
Brian Walenz and
Granger G. Sutton},
title = {An algorithm for automated closure during assembly},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {457},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-457},
doi = {10.1186/1471-2105-11-457},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KorenMWS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KountourisH10,
author = {Petros Kountouris and
Jonathan D. Hirst},
title = {Predicting \emph{beta}-turns and their types using predicted backbone
dihedral angles and secondary structures},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {407},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-407},
doi = {10.1186/1471-2105-11-407},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KountourisH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KowarschBBSGKT10,
author = {Andreas Kowarsch and
Florian Bl{\"{o}}chl and
Sebastian Bohl and
Maria Saile and
Norbert Gretz and
Ursula Klingm{\"{u}}ller and
Fabian J. Theis},
title = {Knowledge-based matrix factorization temporally resolves the cellular
responses to {IL-6} stimulation},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {585},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-585},
doi = {10.1186/1471-2105-11-585},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KowarschBBSGKT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KozhenkovDSGPB10,
author = {Sergey Kozhenkov and
Yulia Dubinina and
Mayya Sedova and
Amarnath Gupta and
Julia V. Ponomarenko and
Michael Baitaluk},
title = {BiologicalNetworks 2.0 - an integrative view of genome biology data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {610},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-610},
doi = {10.1186/1471-2105-11-610},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KozhenkovDSGPB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KrausK10,
author = {Johann M. Kraus and
Hans A. Kestler},
title = {A highly efficient multi-core algorithm for clustering extremely large
datasets},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {169},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-169},
doi = {10.1186/1471-2105-11-169},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KrausK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KrishnaLB10,
author = {Ritesh Krishna and
Chang{-}Tsun Li and
Vicky Buchanan{-}Wollaston},
title = {A temporal precedence based clustering method for gene expression
microarray data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {68},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-68},
doi = {10.1186/1471-2105-11-68},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KrishnaLB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KrumsiekPWT10,
author = {Jan Krumsiek and
Sebastian P{\"{o}}lsterl and
Dominik M. Wittmann and
Fabian J. Theis},
title = {Odefy -- From discrete to continuous models},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {233},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-233},
doi = {10.1186/1471-2105-11-233},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KrumsiekPWT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KryukovS10,
author = {Kirill Kryukov and
Naruya Saitou},
title = {{MISHIMA} - a new method for high speed multiple alignment of nucleotide
sequences of bacterial genome scale data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {142},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-142},
doi = {10.1186/1471-2105-11-142},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KryukovS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KrzeminskiLBB10,
author = {Micka{\"{e}}l Krzeminski and
Karine Loth and
Rolf Boelens and
Alexandre M. J. J. Bonvin},
title = {{SAMPLEX:} Automatic mapping of perturbed and unperturbed regions
of proteins and complexes},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {51},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-51},
doi = {10.1186/1471-2105-11-51},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KrzeminskiLBB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KuhnWZS10,
author = {Thomas Kuhn and
Egon L. Willighagen and
Achim Zielesny and
Christoph Steinbeck},
title = {CDK-Taverna: an open workflow environment for cheminformatics},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {159},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-159},
doi = {10.1186/1471-2105-11-159},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KuhnWZS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KundetiRDVT10,
author = {Vamsi Kundeti and
Sanguthevar Rajasekaran and
Hieu Dinh and
Matthew Vaughn and
Vishal Thapar},
title = {Efficient parallel and out of core algorithms for constructing large
bi-directed de Bruijn graphs},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {560},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-560},
doi = {10.1186/1471-2105-11-560},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KundetiRDVT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KuschnerMCCST10,
author = {Karl W. Kuschner and
Dariya I. Malyarenko and
William E. Cooke and
Lisa H. Cazares and
O. John Semmes and
Eugene R. Tracy},
title = {A Bayesian network approach to feature selection in mass spectrometry
data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {177},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-177},
doi = {10.1186/1471-2105-11-177},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KuschnerMCCST10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LachmannM10,
author = {Alexander Lachmann and
Avi Ma'ayan},
title = {Lists2Networks: Integrated analysis of gene/protein lists},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {87},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-87},
doi = {10.1186/1471-2105-11-87},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LachmannM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LaingBTZKVTG10,
author = {Chad Laing and
Cody Buchanan and
Eduardo N. Taboada and
Yongxiang Zhang and
Andrew Kropinski and
Andre Villegas and
James E. Thomas and
Victor P. J. Gannon},
title = {Pan-genome sequence analysis using Panseq: an online tool for the
rapid analysis of core and accessory genomic regions},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {461},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-461},
doi = {10.1186/1471-2105-11-461},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LaingBTZKVTG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LamKMTSTSG10,
author = {Hugo Y. K. Lam and
Philip M. Kim and
Janine Mok and
Raffi Tonikian and
Sachdev S. Sidhu and
Benjamin E. Turk and
Michael Snyder and
Mark B. Gerstein},
title = {{MOTIPS:} Automated Motif Analysis for Predicting Targets of Modular
Protein Domains},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {243},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-243},
doi = {10.1186/1471-2105-11-243},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LamKMTSTSG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LaneDL10,
author = {J{\'{e}}r{\^{o}}me Lane and
Patrice Duroux and
Marie{-}Paule Lefranc},
title = {From {IMGT-ONTOLOGY} to IMGT/LIGMotif: the IMGT\({}^{\mbox{{\textregistered}
}}\)standardized approach for immunoglobulin and {T} cell receptor
gene identification and description in large genomic sequences},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {223},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-223},
doi = {10.1186/1471-2105-11-223},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LaneDL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LapinshW10,
author = {Maris Lapins and
Jarl E. S. Wikberg},
title = {Kinome-wide interaction modelling using alignment-based and alignment-independent
approaches for kinase description and linear and non-linear data analysis
techniques},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {339},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-339},
doi = {10.1186/1471-2105-11-339},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LapinshW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LarsonY10,
author = {Jessica L. Larson and
Guo{-}Cheng Yuan},
title = {Epigenetic domains found in mouse embryonic stem cells via a hidden
Markov model},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {557},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-557},
doi = {10.1186/1471-2105-11-557},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LarsonY10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LaukensHDJKWVL10,
author = {Kris Laukens and
Jens Hollunder and
Thanh Hai Dang and
Geert De Jaeger and
Martin Kuiper and
Erwin Witters and
Alain Verschoren and
Koenraad Van Leemput},
title = {Flexible network reconstruction from relational databases with Cytoscape
and CytoSQL},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {360},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-360},
doi = {10.1186/1471-2105-11-360},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LaukensHDJKWVL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LawlessWYAL10,
author = {Conor Lawless and
Darren J. Wilkinson and
Alexander Young and
Stephen G. Addinall and
David A. Lydall},
title = {Colonyzer: automated quantification of micro-organism growth characteristics
on solid agar},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {287},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-287},
doi = {10.1186/1471-2105-11-287},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LawlessWYAL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LawrenceDEMZ10,
author = {Robert Lawrence and
Aaron G. Day{-}Williams and
Katherine S. Elliott and
Andrew P. Morris and
Eleftheria Zeggini},
title = {CCRaVAT and QuTie - enabling analysis of rare variants in large-scale
case control and quantitative trait association studies},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {527},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-527},
doi = {10.1186/1471-2105-11-527},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LawrenceDEMZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LeeLLP10,
author = {Donghwan Lee and
Woojoo Lee and
Youngjo Lee and
Yudi Pawitan},
title = {Super-sparse principal component analyses for high-throughput genomic
data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {296},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-296},
doi = {10.1186/1471-2105-11-296},
timestamp = {Thu, 04 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LeeLLP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LeeRNSAT10,
author = {Daren Lee and
Seth Ruffins and
Queenie Ng and
Nikhil Sane and
Steve Anderson and
Arthur W. Toga},
title = {{MBAT:} {A} scalable informatics system for unifying digital atlasing
workflows},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {608},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-608},
doi = {10.1186/1471-2105-11-608},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LeeRNSAT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LeeST10,
author = {Hsiao Ping Lee and
Tzu{-}Fang Sheu and
Chuan Yi Tang},
title = {A parallel and incremental algorithm for efficient unique signature
discovery on {DNA} databases},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {132},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-132},
doi = {10.1186/1471-2105-11-132},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LeeST10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiDJSSCDKMMSWWWBGGKWMP10,
author = {Peter Li and
Joseph O. Dada and
Daniel Jameson and
Irena Spasic and
Neil Swainston and
Kathleen Carroll and
Warwick B. Dunn and
Farid Khan and
Naglis Malys and
Hanan L. Messiha and
Evangelos Simeonidis and
Dieter Weichart and
Catherine Winder and
Jill Wishart and
David S. Broomhead and
Carole A. Goble and
Simon J. Gaskell and
Douglas B. Kell and
Hans V. Westerhoff and
Pedro Mendes and
Norman W. Paton},
title = {Systematic integration of experimental data and models in systems
biology},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {582},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-582},
doi = {10.1186/1471-2105-11-582},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LiDJSSCDKMMSWWWBGGKWMP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiH10,
author = {Gong{-}Hua Li and
Jing{-}Fei Huang},
title = {{CMASA:} an accurate algorithm for detecting local protein structural
similarity and its application to enzyme catalytic site annotation},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {439},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-439},
doi = {10.1186/1471-2105-11-439},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiLBCJGZ10,
author = {Yong Li and
Lili Liu and
Xi Bai and
Hua Cai and
Wei Ji and
Dianjing Guo and
Yanming Zhu},
title = {Comparative study of discretization methods of microarray data for
inferring transcriptional regulatory networks},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {520},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-520},
doi = {10.1186/1471-2105-11-520},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiLBCJGZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiMF10,
author = {Yunqi Li and
C. Russell Middaugh and
Jianwen Fang},
title = {A novel scoring function for discriminating hyperthermophilic and
mesophilic proteins with application to predicting relative thermostability
of protein mutants},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {62},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-62},
doi = {10.1186/1471-2105-11-62},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiMF10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiN10,
author = {Shuai Cheng Li and
Yen Kaow Ng},
title = {Calibur: a tool for clustering large numbers of protein decoys},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {25},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-25},
doi = {10.1186/1471-2105-11-25},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiN10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiZCW10,
author = {Limin Li and
Xiaobo Zhou and
Wai{-}Ki Ching and
Ping Wang},
title = {Predicting enzyme targets for cancer drugs by profiling human Metabolic
reactions in {NCI-60} cell lines},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {501},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-501},
doi = {10.1186/1471-2105-11-501},
timestamp = {Fri, 01 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LiZCW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiZDZ10,
author = {Zhanchao Li and
Xuan Zhou and
Zong Dai and
Xiaoyong Zou},
title = {Classification of G-protein coupled receptors based on support vector
machine with maximum relevance minimum redundancy and genetic algorithm},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {325},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-325},
doi = {10.1186/1471-2105-11-325},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiZDZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiZHCW10,
author = {Fuhai Li and
Xiaobo Zhou and
Wanting Huang and
Chung{-}Che Chang and
Stephen T. C. Wong},
title = {Conditional random pattern model for copy number aberration detection},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {200},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-200},
doi = {10.1186/1471-2105-11-200},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiZHCW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiangZSYZZ10,
author = {Shide Liang and
Dandan Zheng and
Daron M. Standley and
Bo Yao and
Martin Zacharias and
Chi Zhang},
title = {{EPSVR} and EPMeta: prediction of antigenic epitopes using support
vector regression and multiple server results},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {381},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-381},
doi = {10.1186/1471-2105-11-381},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiangZSYZZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LicameleG10,
author = {Louis Licamele and
Lise Getoor},
title = {Indirect two-sided relative ranking: a robust similarity measure for
gene expression data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {137},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-137},
doi = {10.1186/1471-2105-11-137},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LicameleG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LinHC10,
author = {Wei{-}Jiun Lin and
Huey{-}miin Hsueh and
James J. Chen},
title = {Power and sample size estimation in microarray studies},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {48},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-48},
doi = {10.1186/1471-2105-11-48},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LinHC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LinWTL10,
author = {Yi{-}Ruen Lin and
Hsin{-}Yuan Wei and
Tsung{-}Lin Tsai and
Thy{-}Hou Lin},
title = {{HDAPD:} a web tool for searching the disease-associated protein structures},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {88},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-88},
doi = {10.1186/1471-2105-11-88},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LinWTL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LingnerMGNM10,
author = {Thomas Lingner and
Stefanie M{\"{u}}hlhausen and
Toni Gabald{\'{o}}n and
C{\'{e}}dric Notredame and
Peter Meinicke},
title = {Predicting phenotypic traits of prokaryotes from protein domain frequencies},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {481},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-481},
doi = {10.1186/1471-2105-11-481},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LingnerMGNM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuCTJG10,
author = {Zhenqiu Liu and
Dechang Chen and
Ming Tan and
Feng Jiang and
Ronald B. Gartenhaus},
title = {Kernel based methods for accelerated failure time model with ultra-high
dimensional data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {606},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-606},
doi = {10.1186/1471-2105-11-606},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuCTJG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuCYX10,
author = {Qi Liu and
Juan Cui and
Qiang Yang and
Ying Xu},
title = {\emph{In-silico }prediction of blood-secretory human proteins using
a ranking algorithm},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {250},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-250},
doi = {10.1186/1471-2105-11-250},
timestamp = {Wed, 18 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuCYX10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuL10,
author = {Qian Liu and
Jinyan Li},
title = {Protein binding hot spots and the residue-residue pairing preference:
a water exclusion perspective},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {244},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-244},
doi = {10.1186/1471-2105-11-244},
timestamp = {Thu, 22 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuLZRB10,
author = {Yu{-}Shen Liu and
Qi Li and
Guo{-}Qin Zheng and
Karthik Ramani and
William Benjamin},
title = {Using diffusion distances for flexible molecular shape comparison},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {480},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-480},
doi = {10.1186/1471-2105-11-480},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuLZRB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuT10,
author = {Yichuan Liu and
Aydin T{\"{o}}zeren},
title = {Modular composition predicts kinase/substrate interactions},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {349},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-349},
doi = {10.1186/1471-2105-11-349},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuWW10,
author = {Guimei Liu and
Yue Wang and
Limsoon Wong},
title = {FastTagger: an efficient algorithm for genome-wide tag {SNP} selection
using multi-marker linkage disequilibrium},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {66},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-66},
doi = {10.1186/1471-2105-11-66},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuWW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuXZXCY10,
author = {Qi Liu and
Qian Xu and
Vincent Wenchen Zheng and
Hong Xue and
Zhi{-}Wei Cao and
Qiang Yang},
title = {Multi-task learning for cross-platform siRNA efficacy prediction:
an in-silico study},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {181},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-181},
doi = {10.1186/1471-2105-11-181},
timestamp = {Wed, 18 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuXZXCY10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuYCGH10,
author = {Hui Liu and
Dong Yue and
Yidong Chen and
Shou{-}Jiang Gao and
Yufei Huang},
title = {Improving performance of mammalian microRNA target prediction},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {476},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-476},
doi = {10.1186/1471-2105-11-476},
timestamp = {Mon, 27 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuYCGH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LockZMD10,
author = {Eric F. Lock and
Ryan Ziemiecki and
J. S. Marron and
Dirk P. Dittmer},
title = {Efficiency clustering for low-density microarrays and its application
to {QPCR}},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {386},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-386},
doi = {10.1186/1471-2105-11-386},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LockZMD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LogsdonHM10,
author = {Benjamin A. Logsdon and
Gabriel E. Hoffman and
Jason G. Mezey},
title = {A variational Bayes algorithm for fast and accurate multiple locus
genome-wide association analysis},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {58},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-58},
doi = {10.1186/1471-2105-11-58},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LogsdonHM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LossSDNFCMLGFSP10,
author = {Leandro A. Loss and
Anguraj Sadanandam and
Steffen Durinck and
Shivani Nautiya and
Diane Flaucher and
Victoria E. H. Carlton and
Martin Moorhead and
Yontao Lu and
Joe W. Gray and
Malek Faham and
Paul T. Spellman and
Bahram Parvin},
title = {Prediction of epigenetically regulated genes in breast cancer cell
lines},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {305},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-305},
doi = {10.1186/1471-2105-11-305},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LossSDNFCMLGFSP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LoytynojaG10,
author = {Ari L{\"{o}}ytynoja and
Nick Goldman},
title = {webPRANK: a phylogeny-aware multiple sequence aligner with interactive
alignment browser},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {579},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-579},
doi = {10.1186/1471-2105-11-579},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LoytynojaG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LuSWCC10,
author = {Ming Lu and
Bing Shi and
Juan Wang and
Qun Cao and
Qinghua Cui},
title = {{TAM:} {A} method for enrichment and depletion analysis of a microRNA
category in a list of microRNAs},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {419},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-419},
doi = {10.1186/1471-2105-11-419},
timestamp = {Mon, 01 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LuSWCC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LuoLELK10,
author = {Huaien Luo and
Juntao Li and
Majid Eshaghi and
Jianhua Liu and
R. Krishna Murthy Karuturi},
title = {Genome-wide estimation of firing efficiencies of origins of {DNA}
replication from time-course copy number variation data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {247},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-247},
doi = {10.1186/1471-2105-11-247},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LuoLELK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LuyfSVBKO10,
author = {Angela C. M. Luyf and
Barbera D. C. van Schaik and
Michel de Vries and
Frank Baas and
Antoine H. C. van Kampen and
S{\'{\i}}lvia D. Olabarriaga},
title = {Initial steps towards a production platform for {DNA} sequence analysis
on the grid},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {598},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-598},
doi = {10.1186/1471-2105-11-598},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LuyfSVBKO10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MaDWHDW10,
author = {Jingming Ma and
Carrie Dykes and
Tao Wu and
Yangxin Huang and
Lisa M. Demeter and
Hulin Wu},
title = {vFitness: a web-based computing tool for improving estimation of \emph{in
vitro }HIV-1 fitness experiments},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {261},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-261},
doi = {10.1186/1471-2105-11-261},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MaDWHDW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MaK10,
author = {Shuangge Ma and
Michael R. Kosorok},
title = {Detection of gene pathways with predictive power for breast cancer
prognosis},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {1},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-1},
doi = {10.1186/1471-2105-11-1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MaK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MaSLYS10,
author = {Shuangge Ma and
Mingyu Shi and
Yang Li and
Danhui Yi and
Ben{-}Chang Shia},
title = {Incorporating gene co-expression network in identification of cancer
prognosis markers},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {271},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-271},
doi = {10.1186/1471-2105-11-271},
timestamp = {Wed, 22 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/MaSLYS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MacLeanMS10,
author = {Daniel MacLean and
Vincent Moulton and
David J. Studholme},
title = {Finding sRNA generative locales from high-throughput sequencing data
with NiBLS},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {93},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-93},
doi = {10.1186/1471-2105-11-93},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MacLeanMS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MaddenCJBFOH10,
author = {Stephen F. Madden and
Susan B. Carpenter and
Ian B. Jeffery and
Harry Bj{\"{o}}rkbacka and
Katherine A. Fitzgerald and
Luke A. O'Neill and
Desmond G. Higgins},
title = {Detecting microRNA activity from gene expression data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {257},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-257},
doi = {10.1186/1471-2105-11-257},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MaddenCJBFOH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MagiM10,
author = {Reedik M{\"{a}}gi and
Andrew P. Morris},
title = {{GWAMA:} software for genome-wide association meta-analysis},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {288},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-288},
doi = {10.1186/1471-2105-11-288},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MagiM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MaraziotisDT10,
author = {Ioannis A. Maraziotis and
Andrei Dragomir and
Dimitris Thanos},
title = {Gene regulatory networks modelling using a dynamic evolutionary hybrid},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {140},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-140},
doi = {10.1186/1471-2105-11-140},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MaraziotisDT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MargeleviciusV10,
author = {Mindaugas Margelevicius and
Ceslovas Venclovas},
title = {Detection of distant evolutionary relationships between protein families
using theory of sequence profile-profile comparison},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {89},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-89},
doi = {10.1186/1471-2105-11-89},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MargeleviciusV10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MarsicoHWTVSS10,
author = {Annalisa Marsico and
Andreas Henschel and
Christof Winter and
Anne Tuukkanen and
Boris Vassilev and
Kerstin Scheubert and
Michael Schroeder},
title = {Structural fragment clustering reveals novel structural and functional
motifs in \emph{alpha}-helical transmembrane proteins},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {204},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-204},
doi = {10.1186/1471-2105-11-204},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/MarsicoHWTVSS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MartinORMFB10,
author = {Alexander Martin and
Maria Elena Ochagav{\'{\i}}a and
Laya C. Rabasa and
Jamilet Miranda and
Jorge Fernandez{-}de{-}Coss{\'{\i}}o and
Ricardo Bringas},
title = {BisoGenet: a new tool for gene network building, visualization and
analysis},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {91},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-91},
doi = {10.1186/1471-2105-11-91},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/MartinORMFB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MarttinenC10,
author = {Pekka Marttinen and
Jukka Corander},
title = {Efficient Bayesian approach for multilocus association mapping including
gene-gene interactions},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {443},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-443},
doi = {10.1186/1471-2105-11-443},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/MarttinenC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MassoV10,
author = {Majid Masso and
Iosif I. Vaisman},
title = {Accurate and efficient gp120 {V3} loop structure based models for
the determination of {HIV-1} co-receptor usage},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {494},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-494},
doi = {10.1186/1471-2105-11-494},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MassoV10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MatosAMO10,
author = {S{\'{e}}rgio Matos and
Joel Arrais and
Jo{\~{a}}o Maia{-}Rodrigues and
Jos{\'{e}} Lu{\'{\i}}s Oliveira},
title = {Concept-based query expansion for retrieving gene related publications
from {MEDLINE}},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {212},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-212},
doi = {10.1186/1471-2105-11-212},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MatosAMO10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MatsenKA10,
author = {Frederick A. Matsen IV and
Robin B. Kodner and
E. Virginia Armbrust},
title = {pplacer: linear time maximum-likelihood and Bayesian phylogenetic
placement of sequences onto a fixed reference tree},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {538},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-538},
doi = {10.1186/1471-2105-11-538},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MatsenKA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/McHughA10,
author = {Leo C. McHugh and
Jonathan W. Arthur},
title = {Harvest: an open-source tool for the validation and improvement of
peptide identification metrics and fragmentation exploration},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {448},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-448},
doi = {10.1186/1471-2105-11-448},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/McHughA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/McLeayB10,
author = {Robert C. McLeay and
Timothy L. Bailey},
title = {Motif Enrichment Analysis: a unified framework and an evaluation on
ChIP data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {165},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-165},
doi = {10.1186/1471-2105-11-165},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/McLeayB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MechelkeH10,
author = {Martin Mechelke and
Michael Habeck},
title = {Robust probabilistic superposition and comparison of protein structures},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {363},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-363},
doi = {10.1186/1471-2105-11-363},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MechelkeH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MeiSCSSP10,
author = {Teo Shu Mei and
Agus Salim and
Stefano Calza and
Ku Chee Seng and
Kee Seng Chia and
Yudi Pawitan},
title = {Identification of recurrent regions of copy-number variants across
multiple individuals},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {147},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-147},
doi = {10.1186/1471-2105-11-147},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MeiSCSSP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MengJABJLSZMO10,
author = {Hailong Meng and
Andrew R. Joyce and
Daniel E. Adkins and
Priyadarshi Basu and
Yankai Jia and
Guoya Li and
Tapas K. Sengupta and
Barbara K. Zedler and
Edward Lenn Murrelle and
Edwin J. C. G. van den Oord},
title = {A statistical method for excluding non-variable CpG sites in high-throughput
{DNA} methylation profiling},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {227},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-227},
doi = {10.1186/1471-2105-11-227},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MengJABJLSZMO10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MengMV10,
author = {Guofeng Meng and
Axel Mosig and
Martin Vingron},
title = {A computational evaluation of over-representation of regulatory motifs
in the promoter regions of differentially expressed genes},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {267},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-267},
doi = {10.1186/1471-2105-11-267},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MengMV10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MieczkowskiTDP10,
author = {Jakub Mieczkowski and
Magdalena E. Tyburczy and
Michal Dabrowski and
Piotr Pokarowski},
title = {Probe set filtering increases correlation between Affymetrix GeneChip
and qRT-PCR expression measurements},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {104},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-104},
doi = {10.1186/1471-2105-11-104},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MieczkowskiTDP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MillerMRGBHCNN10,
author = {Andrew K. Miller and
Justin Marsh and
Adam Reeve and
Alan Garny and
Randall Britten and
Matt D. B. Halstead and
Jonathan Cooper and
David P. Nickerson and
Poul M. F. Nielsen},
title = {An overview of the CellML {API} and its implementation},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {178},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-178},
doi = {10.1186/1471-2105-11-178},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MillerMRGBHCNN10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MiloneSKLLGC10,
author = {Diego H. Milone and
Georgina Stegmayer and
Laura Kamenetzky and
Mariana G. Lopez and
Je Min Lee and
James J. Giovannoni and
Fernando Carrari},
title = {*omeSOM: a software for clustering and visualization of transcriptional
and metabolite data mined from interspecific crosses of crop plants},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {438},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-438},
doi = {10.1186/1471-2105-11-438},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/MiloneSKLLGC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MisselwitzSPSRHKH10,
author = {Benjamin Misselwitz and
Gerhard Strittmatter and
Balamurugan Periaswamy and
Markus C. Schlumberger and
Samuel Rout and
P{\'{e}}ter Horv{\'{a}}th and
Karol Kozak and
Wolf{-}Dietrich Hardt},
title = {Enhanced CellClassifier: a multi-class classification tool for microscopy
images},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {30},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-30},
doi = {10.1186/1471-2105-11-30},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MisselwitzSPSRHKH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MoMCGHOLL10,
author = {Fan Mo and
Qun Mo and
Yuanyuan Chen and
David R. Goodlett and
Leroy Hood and
Gilbert S. Omenn and
Song Li and
Biaoyang Lin},
title = {WaveletQuant, an improved quantification software based on wavelet
signal threshold de-noising for labeled quantitative proteomic analysis},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {219},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-219},
doi = {10.1186/1471-2105-11-219},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MoMCGHOLL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MollBK10,
author = {Mark Moll and
Drew H. Bryant and
Lydia E. Kavraki},
title = {The LabelHash Algorithm for Substructure Matching},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {555},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-555},
doi = {10.1186/1471-2105-11-555},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MollBK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MoriMK10,
author = {Hiroshi Mori and
Fumito Maruyama and
Ken Kurokawa},
title = {{VITCOMIC:} visualization tool for taxonomic compositions of microbial
communities based on 16S rRNA gene sequences},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {332},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-332},
doi = {10.1186/1471-2105-11-332},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MoriMK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MorineMTRMGGR10,
author = {Melissa J. Morine and
Jolene McMonagle and
Sinead Toomey and
Clare M. Reynolds and
Aidan P. Moloney and
Isobel Claire Gormley and
Peadar {\'{O}} Gaora and
Helen M. Roche},
title = {Bi-directional gene set enrichment and canonical correlation analysis
identify key diet-sensitive pathways and biomarkers of metabolic syndrome},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {499},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-499},
doi = {10.1186/1471-2105-11-499},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MorineMTRMGGR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Moseley10,
author = {Hunter N. B. Moseley},
title = {Correcting for the effects of natural abundance in stable isotope
resolved metabolomics experiments involving ultra-high resolution
mass spectrometry},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {139},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-139},
doi = {10.1186/1471-2105-11-139},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Moseley10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MuecksteinLPHK10,
author = {Ulrike M{\"{u}}ckstein and
Germ{\'{a}}n G. Leparc and
Alexandra Posekany and
Ivo L. Hofacker and
David P. Kreil},
title = {Hybridization thermodynamics of NimbleGen Microarrays},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {35},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-35},
doi = {10.1186/1471-2105-11-35},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MuecksteinLPHK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MunceyJIE10,
author = {Harriet J. Muncey and
Rebecca Jones and
Maria De Iorio and
Timothy M. D. Ebbels},
title = {MetAssimulo: Simulation of Realistic {NMR} Metabolic Profiles},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {496},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-496},
doi = {10.1186/1471-2105-11-496},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/MunceyJIE10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MunozZZARS10,
author = {Adriana Mu{\~{n}}oz and
Chunfang Zheng and
Qian Zhu and
Victor A. Albert and
Steve Rounsley and
David Sankoff},
title = {Scaffold filling, contig fusion and comparative gene order inference},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {304},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-304},
doi = {10.1186/1471-2105-11-304},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/MunozZZARS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MunzLHB10,
author = {M{\'{a}}rton M{\"{u}}nz and
Rune B. Lyngs{\o} and
Jotun Hein and
Philip C. Biggin},
title = {Dynamics based alignment of proteins: an alternative approach to quantify
dynamic similarity},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {188},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-188},
doi = {10.1186/1471-2105-11-188},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MunzLHB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NaeemKCZ10,
author = {Haroon Naeem and
Robert K{\"{u}}ffner and
Gergely Csaba and
Ralf Zimmer},
title = {miRSel: Automated extraction of associations between microRNAs and
genes from the biomedical literature},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {135},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-135},
doi = {10.1186/1471-2105-11-135},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/NaeemKCZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NakamuraKFGA10,
author = {Yoji Nakamura and
Tomoyoshi Komiyama and
Motoki Furue and
Takashi Gojobori and
Yasuto Akiyama},
title = {{CIG-DB:} the database for human or mouse immunoglobulin and {T} cell
receptor genes available for cancer studies},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {398},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-398},
doi = {10.1186/1471-2105-11-398},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NakamuraKFGA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NakatoG10,
author = {Ryuichiro Nakato and
Osamu Gotoh},
title = {Cgaln: fast and space-efficient whole-genome alignment},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {224},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-224},
doi = {10.1186/1471-2105-11-224},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NakatoG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NataleFGMPS10,
author = {Raffaele Di Natale and
Alfredo Ferro and
Rosalba Giugno and
Misael Mongiov{\`{\i}} and
Alfredo Pulvirenti and
Dennis E. Shasha},
title = {{SING:} Subgraph search In Non-homogeneous Graphs},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {96},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-96},
doi = {10.1186/1471-2105-11-96},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NataleFGMPS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NaumannLW10,
author = {Ulrike Naumann and
George Luta and
Matthew P. Wand},
title = {The curvHDR method for gating flow cytometry samples},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {44},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-44},
doi = {10.1186/1471-2105-11-44},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NaumannLW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Nepomuceno-ChamorroAR10,
author = {Isabel A. Nepomuceno{-}Chamorro and
Jes{\'{u}}s S. Aguilar{-}Ruiz and
Jos{\'{e}} C. Riquelme},
title = {Inferring gene regression networks with model trees},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {517},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-517},
doi = {10.1186/1471-2105-11-517},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Nepomuceno-ChamorroAR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NepuszSP10,
author = {Tam{\'{a}}s Nepusz and
Rajkumar Sasidharan and
Alberto Paccanaro},
title = {{SCPS:} a fast implementation of a spectral method for detecting protein
families on a genome-wide scale},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {120},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-120},
doi = {10.1186/1471-2105-11-120},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NepuszSP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NevarezDFQB10,
author = {P. Andrew Nevarez and
Christopher M. DeBoever and
Benjamin J. Freeland and
Marissa A. Quitt and
Eliot C. Bush},
title = {Context dependent substitution biases vary within the human genome},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {462},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-462},
doi = {10.1186/1471-2105-11-462},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NevarezDFQB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NevesCP10,
author = {Mariana L. Neves and
Jos{\'{e}} Mar{\'{\i}}a Carazo and
Alberto D. Pascual{-}Montano},
title = {Moara: a Java library for extracting and normalizing gene and protein
mentions},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {157},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-157},
doi = {10.1186/1471-2105-11-157},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NevesCP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NewmanC10,
author = {Aaron M. Newman and
James B. Cooper},
title = {AutoSOME: a clustering method for identifying gene expression modules
without prior knowledge of cluster number},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {117},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-117},
doi = {10.1186/1471-2105-11-117},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NewmanC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NguyenADJA10,
author = {Tung T. Nguyen and
Richard R. Almon and
Debra C. DuBois and
William J. Jusko and
Ioannis P. Androulakis},
title = {Importance of replication in analyzing time-series gene expression
data: Corticosteroid dynamics and circadian patterns in rat liver},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {279},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-279},
doi = {10.1186/1471-2105-11-279},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NguyenADJA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NguyenADJA10a,
author = {Tung T. Nguyen and
Richard R. Almon and
Debra C. DuBois and
William J. Jusko and
Ioannis P. Androulakis},
title = {Comparative analysis of acute and chronic corticosteroid pharmacogenomic
effects in rat liver: Transcriptional dynamics and regulatory structures},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {515},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-515},
doi = {10.1186/1471-2105-11-515},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NguyenADJA10a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NicodemusMSZ10,
author = {Kristin K. Nicodemus and
James D. Malley and
Carolin Strobl and
Andreas Ziegler},
title = {The behaviour of random forest permutation-based variable importance
measures under predictor correlation},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {110},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-110},
doi = {10.1186/1471-2105-11-110},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/NicodemusMSZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NingNSLN10,
author = {Kang Ning and
Hoong Kee Ng and
Sriganesh Srihari and
Hon Wai Leong and
Alexey I. Nesvizhskii},
title = {Examination of the relationship between essential genes in {PPI} network
and hub proteins in reverse nearest neighbor topology},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {505},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-505},
doi = {10.1186/1471-2105-11-505},
timestamp = {Fri, 03 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/NingNSLN10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NitschGOMM10,
author = {Daniela Nitsch and
Joana P. Gon{\c{c}}alves and
Fabian Ojeda and
Bart De Moor and
Yves Moreau},
title = {Candidate gene prioritization by network analysis of differential
expression using machine learning approaches},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {460},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-460},
doi = {10.1186/1471-2105-11-460},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/NitschGOMM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NiuFSL10,
author = {Beifang Niu and
Limin Fu and
Shulei Sun and
Weizhong Li},
title = {Artificial and natural duplicates in pyrosequencing reads of metagenomic
data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {187},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-187},
doi = {10.1186/1471-2105-11-187},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NiuFSL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NixSDMCQC10,
author = {David A. Nix and
Tonya L. Di Sera and
Brian K. Dalley and
Brett A. Milash and
Robert M. Cundick and
Kevin S. Quinn and
Samir J. Courdy},
title = {Next generation tools for genomic data generation, distribution, and
visualization},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {455},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-455},
doi = {10.1186/1471-2105-11-455},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NixSDMCQC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NorambuenaM10,
author = {Tom{\'{a}}s Norambuena and
Francisco Melo},
title = {The Protein-DNA Interface database},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {262},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-262},
doi = {10.1186/1471-2105-11-262},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NorambuenaM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NovakNM10,
author = {Petr Nov{\'{a}}k and
Pavel Neumann and
Jir{\'{\i}} Macas},
title = {Graph-based clustering and characterization of repetitive sequences
in next-generation sequencing data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {378},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-378},
doi = {10.1186/1471-2105-11-378},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NovakNM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NyamundandaBG10,
author = {Gift Nyamundanda and
Lorraine Brennan and
Isobel Claire Gormley},
title = {Probabilistic Principal Component Analysis for Metabolomic Data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {571},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-571},
doi = {10.1186/1471-2105-11-571},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NyamundandaBG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Oberto10,
author = {Jacques Oberto},
title = {{FITBAR:} a web tool for the robust prediction of prokaryotic regulons},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {554},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-554},
doi = {10.1186/1471-2105-11-554},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Oberto10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/OhtakiOHKSH10,
author = {Megu Ohtaki and
Keiko Otani and
Keiko Hiyama and
Naomi Kamei and
Kenichi Satoh and
Eiso Hiyama},
title = {A robust method for estimating gene expression states using Affymetrix
microarray probe level data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {183},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-183},
doi = {10.1186/1471-2105-11-183},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/OhtakiOHKSH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/OlsenMK10,
author = {Brady Olsen and
Christopher J. Murakami and
Matt Kaeberlein},
title = {{YODA:} Software to facilitate high-throughput analysis of chronological
life span, growth rate, and survival in budding yeast},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {141},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-141},
doi = {10.1186/1471-2105-11-141},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/OlsenMK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Ortega-MartorellOJA10,
author = {Sandra Ortega{-}Martorell and
Iv{\'{a}}n Olier and
Margarida Juli{\`{a}}{-}Sap{\'{e}} and
Carles Ar{\'{u}}s},
title = {SpectraClassifier 1.0: a user friendly, automated MRS-based classifier-development
system},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {106},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-106},
doi = {10.1186/1471-2105-11-106},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Ortega-MartorellOJA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/OstrovnayaNO10,
author = {Irina Ostrovnaya and
Gouri Nanjangud and
Adam B. Olshen},
title = {A classification model for distinguishing copy number variants from
cancer-related alterations},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {297},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-297},
doi = {10.1186/1471-2105-11-297},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/OstrovnayaNO10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/OvacikSADJA10,
author = {Meric A. Ovacik and
Siddharth Sukumaran and
Richard R. Almon and
Debra C. DuBois and
William J. Jusko and
Ioannis P. Androulakis},
title = {Circadian signatures in rat liver: from gene expression to pathways},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {540},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-540},
doi = {10.1186/1471-2105-11-540},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/OvacikSADJA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/OzawaSFKIYMT10,
author = {Yosuke Ozawa and
Rintaro Saito and
Shigeo Fujimori and
Hisashi Kashima and
Masamichi Ishizaka and
Hiroshi Yanagawa and
Etsuko Miyamoto{-}Sato and
Masaru Tomita},
title = {Protein complex prediction via verifying and reconstructing the topology
of domain-domain interactions},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {350},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-350},
doi = {10.1186/1471-2105-11-350},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/OzawaSFKIYMT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PalmerDBF10,
author = {Lance E. Palmer and
Math{\"{a}}us Dejori and
Randall A. Bolanos and
Daniel P. Fasulo},
title = {Improving de novo sequence assembly using machine learning and comparative
genomics for overlap correction},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {33},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-33},
doi = {10.1186/1471-2105-11-33},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PalmerDBF10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PaluszewskiH10,
author = {Martin Paluszewski and
Thomas Hamelryck},
title = {Mocapy++ - {A} toolkit for inference and learning in dynamic Bayesian
networks},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {126},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-126},
doi = {10.1186/1471-2105-11-126},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PaluszewskiH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PanPMCBVHS10,
author = {Chongle Pan and
Byung{-}Hoon Park and
William H. McDonald and
Patricia A. Carey and
Jillian F. Banfield and
Nathan Verberkmoes and
Robert L. Hettich and
Nagiza F. Samatova},
title = {A high-throughput \emph{de novo }sequencing approach for shotgun proteomics
using high-resolution tandem mass spectrometry},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {118},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-118},
doi = {10.1186/1471-2105-11-118},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PanPMCBVHS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PandiniFK10,
author = {Alessandro Pandini and
Arianna Fornili and
Jens Kleinjung},
title = {Structural alphabets derived from attractors in conformational space},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {97},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-97},
doi = {10.1186/1471-2105-11-97},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PandiniFK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ParikhHDZKSS10,
author = {Anup Parikh and
Eryong Huang and
Christopher Dinh and
Blaz Zupan and
Adam Kuspa and
Devika Subramanian and
Gad Shaulsky},
title = {New components of the \emph{Dictyostelium }PKA pathway revealed by
Bayesian analysis of expression data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {163},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-163},
doi = {10.1186/1471-2105-11-163},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ParikhHDZKSS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ParkerBBPST10,
author = {Anne Parker and
Eugene Bragin and
Simon Brent and
Bethan Pritchard and
James A. Smith and
Stephen J. Trevanion},
title = {Using caching and optimization techniques to improve performance of
the Ensembl website},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {239},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-239},
doi = {10.1186/1471-2105-11-239},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ParkerBBPST10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ParkerZGB10,
author = {Andrew S. Parker and
Wei Zheng and
Karl E. Griswold and
Chris Bailey{-}Kellogg},
title = {Optimization algorithms for functional deimmunization of therapeutic
proteins},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {180},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-180},
doi = {10.1186/1471-2105-11-180},
timestamp = {Thu, 17 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ParkerZGB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Paszkowski-RogaczSPB10,
author = {Maciej Paszkowski{-}Rogacz and
Mikolaj Slabicki and
M. Teresa Pisabarro and
Frank Buchholz},
title = {PhenoFam-gene set enrichment analysis through protein structural information},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {254},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-254},
doi = {10.1186/1471-2105-11-254},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Paszkowski-RogaczSPB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PelzGB10,
author = {Oliver Pelz and
Moritz Gilsdorf and
Michael Boutros},
title = {web cellHTS2: {A} web-application for the analysis of high-throughput
screening data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {185},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-185},
doi = {10.1186/1471-2105-11-185},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PelzGB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PengA10,
author = {Bo Peng and
Christopher I. Amos},
title = {Forward-time simulation of realistic samples for genome-wide association
studies},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {442},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-442},
doi = {10.1186/1471-2105-11-442},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PengA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PengKP10,
author = {Shouyong Peng and
Mitzi I. Kuroda and
Peter J. Park},
title = {Quantized correlation coefficient for measuring reproducibility of
ChIP-chip data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {399},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-399},
doi = {10.1186/1471-2105-11-399},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PengKP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PengWTCCPCT10,
author = {Shih Chi Peng and
David Shan{-}Hill Wong and
Kai Che Tung and
Yan Yu Chen and
Chun Cheih Chao and
Chien Hua Peng and
Yung{-}Jen Chuang and
Chuan Yi Tang},
title = {Computational modeling with forward and reverse engineering links
signaling network and genomic regulatory responses: NF-kappaB signaling-induced
gene expression responses in inflammation},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {308},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-308},
doi = {10.1186/1471-2105-11-308},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PengWTCCPCT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PengYC10,
author = {Zhen{-}Ling Peng and
Jianyi Yang and
Xin Chen},
title = {An improved classification of G-protein-coupled receptors using sequence-derived
features},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {420},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-420},
doi = {10.1186/1471-2105-11-420},
timestamp = {Mon, 25 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PengYC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Perez-RuizJMOMA10,
author = {Alexander P{\'{e}}rez{-}Ruiz and
Margarida Juli{\`{a}}{-}Sap{\'{e}} and
Guillem Mercadal and
Iv{\'{a}}n Olier and
Carles Maj{\'{o}}s and
Carles Ar{\'{u}}s},
title = {The {INTERPRET} Decision-Support System version 3.0 for evaluation
of Magnetic Resonance Spectroscopy data from human brain tumours and
other abnormal brain masses},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {581},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-581},
doi = {10.1186/1471-2105-11-581},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Perez-RuizJMOMA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PerreaultAAD10,
author = {Louis{-}Philippe Lemieux Perreault and
Gregor U. Andelfinger and
G{\'{e}}raldine Asselin and
Marie{-}Pierre Dub{\'{e}}},
title = {Partitioning of copy-number genotypes in pedigrees},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {226},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-226},
doi = {10.1186/1471-2105-11-226},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PerreaultAAD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PetrotchenkoB10,
author = {Evgeniy V. Petrotchenko and
Christoph H. Borchers},
title = {{ICC-CLASS:} isotopically-coded cleavable crosslinking analysis software
suite},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {64},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-64},
doi = {10.1186/1471-2105-11-64},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PetrotchenkoB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PiipariDH10,
author = {Matias Piipari and
Thomas A. Down and
Tim J. P. Hubbard},
title = {Metamotifs - a generative model for building families of nucleotide
position weight matrices},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {348},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-348},
doi = {10.1186/1471-2105-11-348},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PiipariDH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PiippoLNSN10,
author = {Mirva Piippo and
Niina Lietz{\'{e}}n and
Olli Nevalainen and
Jussi Salmi and
Tuula A. Nyman},
title = {Pripper: prediction of caspase cleavage sites from whole proteomes},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {320},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-320},
doi = {10.1186/1471-2105-11-320},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PiippoLNSN10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Pique-RegiCG10,
author = {Roger Pique{-}Regi and
Alejandro C{\'{a}}ceres and
Juan R. Gonz{\'{a}}lez},
title = {R-Gada: a fast and flexible pipeline for copy number analysis in association
studies},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {380},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-380},
doi = {10.1186/1471-2105-11-380},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Pique-RegiCG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PitschiDC10,
author = {Florian Pitschi and
Claudine Devauchelle and
Eduardo Corel},
title = {Automatic detection of anchor points for multiple sequence alignment},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {445},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-445},
doi = {10.1186/1471-2105-11-445},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PitschiDC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PlazziFP10,
author = {Federico Plazzi and
Ronald R. Ferrucci and
Marco Passamonti},
title = {Phylogenetic representativeness: a new method for evaluating taxon
sampling in evolutionary studies},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {209},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-209},
doi = {10.1186/1471-2105-11-209},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PlazziFP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PluskalCVO10,
author = {Tom{\'{a}}s Pluskal and
Sandra Castillo and
Alejandro Villar{-}Briones and
Matej Oresic},
title = {MZmine 2: Modular framework for processing, visualizing, and analyzing
mass spectrometry-based molecular profile data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {395},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-395},
doi = {10.1186/1471-2105-11-395},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PluskalCVO10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PoovathingalG10,
author = {Suresh Kumar Poovathingal and
Rudiyanto Gunawan},
title = {Global parameter estimation methods for stochastic biochemical systems},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {414},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-414},
doi = {10.1186/1471-2105-11-414},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PoovathingalG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PopendaSBWBBA10,
author = {Mariusz Popenda and
Marta Szachniuk and
Marek Blazewicz and
Szymon Wasik and
Edmund K. Burke and
Jacek Blazewicz and
Ryszard W. Adamiak},
title = {{RNA} {FRABASE} 2.0: an advanced web-accessible database with the
capacity to search the three-dimensional fragments within {RNA} structures},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {231},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-231},
doi = {10.1186/1471-2105-11-231},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PopendaSBWBBA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PotapovCIS10,
author = {Vladimir Potapov and
Mati Cohen and
Yuval Inbar and
Gideon Schreiber},
title = {Protein structure modelling and evaluation based on a 4-distance description
of side-chain interactions},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {374},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-374},
doi = {10.1186/1471-2105-11-374},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PotapovCIS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Pozhitkov10,
author = {Alexander E. Pozhitkov},
title = {Scanner calibration revisited},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {361},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-361},
doi = {10.1186/1471-2105-11-361},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Pozhitkov10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PrlicMDBYRBF10,
author = {Andreas Prlic and
Marco A. Martinez and
Dimitris Dimitropoulos and
Bojan Beran and
Benjamin T. Yukich and
Peter W. Rose and
Philip E. Bourne and
J. Lynn Fink},
title = {Integration of open access literature into the {RCSB} Protein Data
Bank using BioLit},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {220},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-220},
doi = {10.1186/1471-2105-11-220},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PrlicMDBYRBF10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/QinYSMHKYC10,
author = {Zhaohui S. Qin and
Jianjun Yu and
Jincheng Shen and
Christopher A. Maher and
Ming Hu and
Shanker Kalyana{-}Sundaram and
Jindan Yu and
Arul M. Chinnaiyan},
title = {HPeak: an HMM-based algorithm for defining read-enriched regions in
ChIP-Seq data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {369},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-369},
doi = {10.1186/1471-2105-11-369},
timestamp = {Thu, 05 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/QinYSMHKYC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/QiuZZC10,
author = {Yu{-}Qing Qiu and
Shi{-}Hua Zhang and
Xiang{-}Sun Zhang and
Luonan Chen},
title = {Detecting disease associated modules and prioritizing active genes
based on high throughput data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {26},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-26},
doi = {10.1186/1471-2105-11-26},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/QiuZZC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/QuHC10,
author = {Yi Qu and
Fei He and
Yuchen Chen},
title = {Different effects of the probe summarization algorithms {PLIER} and
{RMA} on high-level analysis of Affymetrix exon arrays},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {211},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-211},
doi = {10.1186/1471-2105-11-211},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/QuHC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/QuintalesSA10,
author = {Luis Quintales and
Mar S{\'{a}}nchez and
Francisco Antequera},
title = {Analysis of {DNA} strand-specific differential expression with high
density tiling microarrays},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {136},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-136},
doi = {10.1186/1471-2105-11-136},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/QuintalesSA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RaaschSPVKW10,
author = {Peter Raasch and
Ulf Schmitz and
Nadja Patenge and
Julio Vera and
Bernd Kreikemeyer and
Olaf Wolkenhauer},
title = {Non-coding {RNA} detection methods combined to improve usability,
reproducibility and precision},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {491},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-491},
doi = {10.1186/1471-2105-11-491},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RaaschSPVKW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RajaramO10,
author = {Satwik Rajaram and
Yoshi Oono},
title = {NeatMap - non-clustering heat map alternatives in {R}},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {45},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-45},
doi = {10.1186/1471-2105-11-45},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RajaramO10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RancoitaHBK10,
author = {Paola M. V. Rancoita and
Marcus Hutter and
Francesco Bertoni and
Ivo Kwee},
title = {An integrated Bayesian analysis of {LOH} and copy number data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {321},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-321},
doi = {10.1186/1471-2105-11-321},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RancoitaHBK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RatanZHSM10,
author = {Aakrosh Ratan and
Yu Zhang and
Vanessa M. Hayes and
Stephan C. Schuster and
Webb Miller},
title = {Calling SNPs without a reference sequence},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {130},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-130},
doi = {10.1186/1471-2105-11-130},
timestamp = {Mon, 05 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/RatanZHSM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RedestigKFMSA10,
author = {Henning Redestig and
Miyako Kusano and
Atsushi Fukushima and
Fumio Matsuda and
Kazuki Saito and
Masanori Arita},
title = {Consolidating metabolite identifiers to enable contextual and multi-platform
metabolomics data analysis},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {214},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-214},
doi = {10.1186/1471-2105-11-214},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RedestigKFMSA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RegadMNC10,
author = {Leslie Regad and
Juliette Martin and
Gr{\'{e}}gory Nuel and
Anne{-}Claude Camproux},
title = {Mining protein loops using a structural alphabet and statistical exceptionality},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {75},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-75},
doi = {10.1186/1471-2105-11-75},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/RegadMNC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RepsilberKTWBSPKJ10,
author = {Dirk Repsilber and
Sabine Kern and
Anna Telaar and
Gerhard Walzl and
Gillian F. Black and
Joachim Selbig and
Shreemanta K. Parida and
Stefan H. E. Kaufmann and
Marc Jacobsen},
title = {Biomarker discovery in heterogeneous tissue samples -taking the in-silico
deconfounding approach},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {27},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-27},
doi = {10.1186/1471-2105-11-27},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/RepsilberKTWBSPKJ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ReuterM10,
author = {Jessica S. Reuter and
David H. Mathews},
title = {RNAstructure: software for {RNA} secondary structure prediction and
analysis},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {129},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-129},
doi = {10.1186/1471-2105-11-129},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ReuterM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RiderSCFE10,
author = {Andrew K. Rider and
Geoffrey Siwo and
Nitesh V. Chawla and
Michael T. Ferdig and
Scott J. Emrich},
title = {A statistical approach to finding overlooked genetic associations},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {526},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-526},
doi = {10.1186/1471-2105-11-526},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/RiderSCFE10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RiffleD10,
author = {Michael Riffle and
Trisha N. Davis},
title = {The Yeast Resource Center Public Image Repository: {A} large database
of fluorescence microscopy images},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {263},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-263},
doi = {10.1186/1471-2105-11-263},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RiffleD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RiosMCBSFC10,
author = {Daniel Rios and
William M. McLaren and
Yuan Chen and
Ewan Birney and
Arne Stabenau and
Paul Flicek and
Fiona Cunningham},
title = {A database and {API} for variation, dense genotyping and resequencing
data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {238},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-238},
doi = {10.1186/1471-2105-11-238},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RiosMCBSFC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RisuenoFDR10,
author = {Alberto Risue{\~{n}}o and
Celia Fontanillo and
Marcel E. Dinger and
Javier De Las Rivas},
title = {GATExplorer: Genomic and Transcriptomic Explorer; mapping expression
probes to gene loci, transcripts, exons and ncRNAs},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {221},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-221},
doi = {10.1186/1471-2105-11-221},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RisuenoFDR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RitchieFDDDDT10,
author = {Matthew E. Ritchie and
Matthew S. Forrest and
Antigone S. Dimas and
Caroline Daelemans and
Emmanouil T. Dermitzakis and
Panagiotis Deloukas and
Simon Tavar{\'{e}}},
title = {Data analysis issues for allele-specific expression using Illumina's
GoldenGate assay},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {280},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-280},
doi = {10.1186/1471-2105-11-280},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/RitchieFDDDDT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RobinsonDDGP10,
author = {Timothy J. Robinson and
Michaela A. Dinan and
Mark W. Dewhirst and
Mariano A. Garcia{-}Blanco and
James L. Pearson},
title = {SplicerAV: a tool for mining microarray expression data for changes
in {RNA} processing},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {108},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-108},
doi = {10.1186/1471-2105-11-108},
timestamp = {Fri, 19 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/RobinsonDDGP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RohdeZRJ10,
author = {Christian Rohde and
Yingying Zhang and
Richard Reinhardt and
Albert Jeltsch},
title = {{BISMA} - Fast and accurate bisulfite sequencing data analysis of
individual clones from unique and repetitive sequences},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {230},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-230},
doi = {10.1186/1471-2105-11-230},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RohdeZRJ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RoompAL10,
author = {Kirsten Roomp and
Iris Antes and
Thomas Lengauer},
title = {Predicting {MHC} class {I} epitopes in large datasets},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {90},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-90},
doi = {10.1186/1471-2105-11-90},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RoompAL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RosenbergFALF10,
author = {Lina Hultin Rosenberg and
Bo Franz{\'{e}}n and
Gert Auer and
Janne Lehti{\"{o}} and
Jenny Forshed},
title = {Multivariate meta-analysis of proteomics data from human prostate
and colon tumours},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {468},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-468},
doi = {10.1186/1471-2105-11-468},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/RosenbergFALF10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RouamMB10,
author = {Sigrid Rouam and
Thierry Moreau and
Philippe Bro{\"{e}}t},
title = {Identifying common prognostic factors in genomic cancer studies: {A}
novel index for censored outcomes},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {150},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-150},
doi = {10.1186/1471-2105-11-150},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RouamMB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RussellWBS10,
author = {David J. Russell and
Samuel F. Way and
Andrew K. Benson and
Khalid Sayood},
title = {A grammar-based distance metric enables fast and accurate clustering
of large sets of 16S sequences},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {601},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-601},
doi = {10.1186/1471-2105-11-601},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/RussellWBS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RuusuvuoriACGSBDPY10,
author = {Pekka Ruusuvuori and
Tarmo {\"{A}}ij{\"{o}} and
Sharif Chowdhury and
Cecilia Garmendia{-}Torres and
Jyrki Selinummi and
Mirko Birbaumer and
Aim{\'{e}}e M. Dudley and
Lucas Pelkmans and
Olli Yli{-}Harja},
title = {Evaluation of methods for detection of fluorescence labeled subcellular
objects in microscope images},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {248},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-248},
doi = {10.1186/1471-2105-11-248},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RuusuvuoriACGSBDPY10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RyanGCC10,
author = {Colm J. Ryan and
Derek Greene and
Gerard Cagney and
Padraig Cunningham},
title = {Missing value imputation for epistatic MAPs},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {197},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-197},
doi = {10.1186/1471-2105-11-197},
timestamp = {Tue, 13 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/RyanGCC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RykunovF10,
author = {Dmitry Rykunov and
Andr{\'{a}}s Fiser},
title = {New statistical potential for quality assessment of protein models
and a survey of energy functions},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {128},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-128},
doi = {10.1186/1471-2105-11-128},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RykunovF10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SaidiMN10,
author = {Rabie Saidi and
Mondher Maddouri and
Engelbert Mephu Nguifo},
title = {Protein sequences classification by means of feature extraction with
substitution matrices},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {175},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-175},
doi = {10.1186/1471-2105-11-175},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SaidiMN10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SaitoS10,
author = {Takaya Saito and
P{\aa}l S{\ae}trom},
title = {A two-step site and mRNA-level model for predicting microRNA targets},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {612},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-612},
doi = {10.1186/1471-2105-11-612},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SaitoS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Salmon-DivonDTB10,
author = {Mali Salmon{-}Divon and
Heidi Dvinge and
Kairi Tammoja and
Paul Bertone},
title = {PeakAnalyzer: Genome-wide annotation of chromatin binding and modification
loci},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {415},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-415},
doi = {10.1186/1471-2105-11-415},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Salmon-DivonDTB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SambourgT10,
author = {Laure Sambourg and
Nicolas Thierry{-}Mieg},
title = {New insights into protein-protein interaction data lead to increased
estimates of the S. cerevisiae interactome size},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {605},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-605},
doi = {10.1186/1471-2105-11-605},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SambourgT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Sanchez-GarciaAMP10,
author = {Felix Sanchez{-}Garcia and
Uri David Akavia and
Eyal Mozes and
Dana Pe'er},
title = {{JISTIC:} Identification of Significant Targets in Cancer},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {189},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-189},
doi = {10.1186/1471-2105-11-189},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Sanchez-GarciaAMP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SanderRMFTLRDGFVJD10,
author = {Jeffry D. Sander and
Deepak Reyon and
Morgan L. Maeder and
Jonathan E. Foley and
Stacey Thibodeau{-}Beganny and
Xiaohong Li and
Maureen R. Regan and
Elizabeth Dahlborg and
Mathew J. Goodwin and
Fengli Fu and
Daniel F. Voytas and
J. Keith Joung and
Drena Dobbs},
title = {Predicting success of oligomerized pool engineering {(OPEN)} for zinc
finger target site sequences},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {543},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-543},
doi = {10.1186/1471-2105-11-543},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SanderRMFTLRDGFVJD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SangketMCTA10,
author = {Unitsa Sangket and
Surakameth Mahasirimongkol and
Wasun Chantratita and
Pichaya Tandayya and
Yurii S. Aulchenko},
title = {ParallABEL: an {R} library for generalized parallelization of genome-wide
association studies},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {217},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-217},
doi = {10.1186/1471-2105-11-217},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SangketMCTA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SantellaDNHB10,
author = {Anthony Santella and
Zhuo Du and
Sonja Nowotschin and
Anna{-}Katerina Hadjantonakis and
Zhirong Bao},
title = {A hybrid blob-slice model for accurate and efficient detection of
fluorescence labeled nuclei in 3D},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {580},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-580},
doi = {10.1186/1471-2105-11-580},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SantellaDNHB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SatyaKZR10,
author = {Ravi Vijaya Satya and
Kamal Kumar and
Nela Zavaljevski and
Jaques Reifman},
title = {A high-throughput pipeline for the design of real-time {PCR} signatures},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {340},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-340},
doi = {10.1186/1471-2105-11-340},
timestamp = {Fri, 22 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SatyaKZR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ScharfePS10,
author = {Michael Scharfe and
Rainer Pielot and
Falk Schreiber},
title = {Fast multi-core based multimodal registration of 2D cross-sections
and 3D datasets},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {20},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-20},
doi = {10.1186/1471-2105-11-20},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ScharfePS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ScheininFKMWY10,
author = {Ilari Scheinin and
Jose A. Ferreira and
Sakari Knuutila and
Gerrit Meijer and
Mark A. van de Wiel and
Bauke Ylstra},
title = {CGHpower: exploring sample size calculations for chromosomal copy
number experiments},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {331},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-331},
doi = {10.1186/1471-2105-11-331},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ScheininFKMWY10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SchellenbergerPCP10,
author = {Jan Schellenberger and
Junyoung O. Park and
Tom M. Conrad and
Bernhard O. Palsson},
title = {BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale
metabolic reconstructions},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {213},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-213},
doi = {10.1186/1471-2105-11-213},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SchellenbergerPCP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SchietgatVSBKD10,
author = {Leander Schietgat and
Celine Vens and
Jan Struyf and
Hendrik Blockeel and
Dragi Kocev and
Saso Dzeroski},
title = {Predicting gene function using hierarchical multi-label decision tree
ensembles},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {2},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-2},
doi = {10.1186/1471-2105-11-2},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SchietgatVSBKD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SchmidSCLH10,
author = {Benjamin Schmid and
Johannes E. Schindelin and
Albert Cardona and
Mark Longair and
Martin Heisenberg},
title = {A high-level 3D visualization {API} for Java and ImageJ},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {274},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-274},
doi = {10.1186/1471-2105-11-274},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SchmidSCLH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SchmiederLRE10,
author = {Robert Schmieder and
Yan Wei Lim and
Forest Rohwer and
Robert A. Edwards},
title = {TagCleaner: Identification and removal of tag sequences from genomic
and metagenomic datasets},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {341},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-341},
doi = {10.1186/1471-2105-11-341},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SchmiederLRE10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SchrijverLLSPNCDVBHC10,
author = {Joachim M. De Schrijver and
Kim De Leeneer and
Steve Lefever and
Nick Sabbe and
Filip Pattyn and
Filip Van Nieuwerburgh and
Paul Coucke and
Dieter Deforce and
Jo Vandesompele and
Sofie Bekaert and
Jan Hellemans and
Wim Van Criekinge},
title = {Analysing 454 amplicon resequencing experiments using the modular
and database oriented Variant Identification Pipeline},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {269},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-269},
doi = {10.1186/1471-2105-11-269},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SchrijverLLSPNCDVBHC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SchwartzS10,
author = {Russell Schwartz and
Stanley Shackney},
title = {Applying unmixing to gene expression data for tumor phylogeny inference},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {42},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-42},
doi = {10.1186/1471-2105-11-42},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SchwartzS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SelengutRH10,
author = {Jeremy D. Selengut and
Douglas B. Rusch and
Daniel H. Haft},
title = {Sites Inferred by Metabolic Background Assertion Labeling {(SIMBAL):}
adapting the Partial Phylogenetic Profiling algorithm to scan sequences
for signatures that predict protein function},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {52},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-52},
doi = {10.1186/1471-2105-11-52},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SelengutRH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SeverinBVFSGUFH10,
author = {Jessica Severin and
Kathryn Beal and
Albert J. Vilella and
Stephen Fitzgerald and
Michael Schuster and
Leo Gordon and
Abel Ureta{-}Vidal and
Paul Flicek and
Javier Herrero},
title = {eHive: An Artificial Intelligence workflow system for genomic analysis},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {240},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-240},
doi = {10.1186/1471-2105-11-240},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SeverinBVFSGUFH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ShameerMVGS10,
author = {Khader Shameer and
Lalima L. Madan and
Shivamurthy Veeranna and
Balasubramanian Gopal and
Ramanathan Sowdhamini},
title = {PeptideMine - {A} webserver for the design of peptides for protein-peptide
binding studies derived from protein-protein interactomes},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {473},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-473},
doi = {10.1186/1471-2105-11-473},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ShameerMVGS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ShenB10,
author = {Yao Qing Shen and
Gertraud Burger},
title = {TESTLoc: protein subcellular localization prediction from {EST} data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {563},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-563},
doi = {10.1186/1471-2105-11-563},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ShenB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ShenQWLWLHWZZ10,
author = {Zhiyong Shen and
Wubin Qu and
Wen Wang and
Yiming Lu and
Yonghong Wu and
Zhifeng Li and
Xingyi Hang and
Xiaolei Wang and
Dongsheng Zhao and
Chenggang Zhang},
title = {MPprimer: a program for reliable multiplex {PCR} primer design},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {143},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-143},
doi = {10.1186/1471-2105-11-143},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ShenQWLWLHWZZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ShepherdMW10,
author = {Ross K. Shepherd and
Theo H. E. Meuwissen and
John A. Woolliams},
title = {Genomic selection and complex trait prediction using a fast {EM} algorithm
applied to genome-wide markers},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {529},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-529},
doi = {10.1186/1471-2105-11-529},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ShepherdMW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ShettyAMHSPCCZ10,
author = {Amol Carl Shetty and
Prashanth Athri and
Kajari Mondal and
Vanessa L. Horner and
Karyn Meltz Steinberg and
Viren Patel and
Tamara Caspary and
David J. Cutler and
Michael E. Zwick},
title = {SeqAnt: {A} web service to rapidly identify and annotate {DNA} sequence
variations},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {471},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-471},
doi = {10.1186/1471-2105-11-471},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ShettyAMHSPCCZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ShiLMHBK10,
author = {Fan Shi and
Christopher Leckie and
Geoff MacIntyre and
Izhak Haviv and
Alex Boussioutas and
Adam Kowalczyk},
title = {A bi-ordering approach to linking gene expression with clinical annotations
in gastric cancer},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {477},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-477},
doi = {10.1186/1471-2105-11-477},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ShiLMHBK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ShiZJ10,
author = {Guanqun Shi and
Liqing Zhang and
Tao Jiang},
title = {{MSOAR} 2.0: Incorporating tandem duplications into ortholog assignment
based on genome rearrangement},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {10},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-10},
doi = {10.1186/1471-2105-11-10},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ShiZJ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ShiZLT10,
author = {Jian Shi and
Yiwei Zhang and
Haiwei Luo and
Jijun Tang},
title = {Using jackknife to assess the quality of gene order phylogenies},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {168},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-168},
doi = {10.1186/1471-2105-11-168},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ShiZLT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ShterevJGO10,
author = {Ivo D. Shterev and
Sin{-}Ho Jung and
Stephen L. George and
Kouros Owzar},
title = {permGPU: Using graphics processing units in {RNA} microarray association
studies},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {329},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-329},
doi = {10.1186/1471-2105-11-329},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ShterevJGO10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SierkSBP10,
author = {Michael L. Sierk and
Michael E. Smoot and
Ellen J. Bass and
William R. Pearson},
title = {Improving pairwise sequence alignment accuracy using near-optimal
protein sequence alignments},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {146},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-146},
doi = {10.1186/1471-2105-11-146},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SierkSBP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SillSHBZ10,
author = {Martin Sill and
Christoph Schr{\"{o}}der and
J{\"{o}}rg D. Hoheisel and
Axel Benner and
Manuela Zucknick},
title = {Assessment and optimisation of normalisation methods for dual-colour
antibody microarrays},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {556},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-556},
doi = {10.1186/1471-2105-11-556},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SillSHBZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SilvaVOMS10,
author = {Israel T. da Silva and
Ricardo Z. N. V{\^{e}}ncio and
Thiago Y. K. Oliveira and
Greice A. Molfetta and
Wilson A. Silva Jr.},
title = {ProbFAST: Probabilistic Functional Analysis System Tool},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {161},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-161},
doi = {10.1186/1471-2105-11-161},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SilvaVOMS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SimpsonAJ10,
author = {T. Ian Simpson and
J. Douglas Armstrong and
Andrew P. Jarman},
title = {Merged consensus clustering to assess and improve class discovery
with microarray data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {590},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-590},
doi = {10.1186/1471-2105-11-590},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SimpsonAJ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SinghM10,
author = {Vipin Singh and
Rakesh K. Mishra},
title = {{RISCI} - Repeat Induced Sequence Changes Identifier: a comprehensive,
comparative genomics-based, in silico subtractive hybridization pipeline
to identify repeat induced sequence changes in closely related genomes},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {609},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-609},
doi = {10.1186/1471-2105-11-609},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SinghM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SinhaLJGFSHRHSHBP10,
author = {Rileen Sinha and
Thorsten Lenser and
Niels Jahn and
Ulrike Gausmann and
Swetlana Friedel and
Karol Szafranski and
Klaus Huse and
Philip Rosenstiel and
Jochen Hampe and
Stefan Schuster and
Michael Hiller and
Rolf Backofen and
Matthias Platzer},
title = {TassDB2 - {A} comprehensive database of subtle alternative splicing
events},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {216},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-216},
doi = {10.1186/1471-2105-11-216},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SinhaLJGFSHRHSHBP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SirbuRC10,
author = {Alina S{\^{\i}}rbu and
Heather J. Ruskin and
Martin Crane},
title = {Comparison of evolutionary algorithms in gene regulatory network model
inference},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {59},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-59},
doi = {10.1186/1471-2105-11-59},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SirbuRC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SistiGRTDS10,
author = {Davide Sisti and
Michele Guescini and
Marco B. L. Rocchi and
Pasquale Tibollo and
Mario D'Atri and
Vilberto Stocchi},
title = {Shape based kinetic outlier detection in real-time {PCR}},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {186},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-186},
doi = {10.1186/1471-2105-11-186},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SistiGRTDS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SlabbinckWDVB10,
author = {Bram Slabbinck and
Willem Waegeman and
Peter Dawyndt and
Paul De Vos and
Bernard De Baets},
title = {From learning taxonomies to phylogenetic learning: Integration of
16S rRNA gene data into FAME-based bacterial classification},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {69},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-69},
doi = {10.1186/1471-2105-11-69},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SlabbinckWDVB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SmithDTL10,
author = {Mike L. Smith and
Mark J. Dunning and
Simon Tavar{\'{e}} and
Andy G. Lynch},
title = {Identification and correction of previously unreported spatial phenomena
using raw Illumina BeadArray data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {208},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-208},
doi = {10.1186/1471-2105-11-208},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SmithDTL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SobolevFLZKKP10,
author = {Boris Sobolev and
Dmitry Filimonov and
Alexey Lagunin and
Alexey V. Zakharov and
Olga Koborova and
Alexander E. Kel and
Vladimir Poroikov},
title = {Functional classification of proteins based on projection of amino
acid sequences: application for prediction of protein kinase substrates},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {313},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-313},
doi = {10.1186/1471-2105-11-313},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SobolevFLZKKP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SohDGW10,
author = {Donny Soh and
Difeng Dong and
Yike Guo and
Limsoon Wong},
title = {Consistency, comprehensiveness, and compatibility of pathway databases},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {449},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-449},
doi = {10.1186/1471-2105-11-449},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SohDGW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SohnOGKJ10,
author = {Insuk Sohn and
Kouros Owzar and
Stephen L. George and
Sujong Kim and
Sin{-}Ho Jung},
title = {Robust test method for time-course microarray experiments},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {391},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-391},
doi = {10.1186/1471-2105-11-391},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SohnOGKJ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SolernouF10,
author = {Albert Solernou and
Juan Fern{\'{a}}ndez{-}Recio},
title = {Protein docking by Rotation-Based Uniform Sampling (RotBUS) with fast
computing of intermolecular contact distance and residue desolvation},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {352},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-352},
doi = {10.1186/1471-2105-11-352},
timestamp = {Wed, 01 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SolernouF10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SonesonLFF10,
author = {Charlotte Soneson and
Henrik Lilljebj{\"{o}}rn and
Thoas Fioretos and
Magnus Fontes},
title = {Integrative analysis of gene expression and copy number alterations
using canonical correlation analysis},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {191},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-191},
doi = {10.1186/1471-2105-11-191},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SonesonLFF10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SrihariNL10,
author = {Sriganesh Srihari and
Kang Ning and
Hon Wai Leong},
title = {MCL-CAw: a refinement of {MCL} for detecting yeast complexes from
weighted {PPI} networks by incorporating core-attachment structure},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {504},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-504},
doi = {10.1186/1471-2105-11-504},
timestamp = {Fri, 03 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SrihariNL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/StaabOG10,
author = {Jennifer M. Staab and
Thomas M. O'Connell and
Shawn M. Gomez},
title = {Enhancing metabolomic data analysis with Progressive Consensus Alignment
of {NMR} Spectra {(PCANS)}},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {123},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-123},
doi = {10.1186/1471-2105-11-123},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/StaabOG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/StajdoharMZD10,
author = {Miha Stajdohar and
Minca Mramor and
Blaz Zupan and
Janez Demsar},
title = {FragViz: visualization of fragmented networks},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {475},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-475},
doi = {10.1186/1471-2105-11-475},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/StajdoharMZD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SteinwayDLHN10,
author = {Steven N. Steinway and
Ruth Dannenfelser and
Christopher D. Laucius and
James E. Hayes and
Sudhir Nayak},
title = {JCoDA: a tool for detecting evolutionary selection},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {284},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-284},
doi = {10.1186/1471-2105-11-284},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SteinwayDLHN10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/StevensBAW10,
author = {John R. Stevens and
Jason L. Bell and
Kenneth I. Aston and
Kenneth L. White},
title = {A comparison of probe-level and probeset models for small-sample gene
expression data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {281},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-281},
doi = {10.1186/1471-2105-11-281},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/StevensBAW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/StiglicBK10,
author = {Gregor Stiglic and
Mateja Bajgot and
Peter Kokol},
title = {Gene set enrichment meta-learning analysis: next- generation sequencing
versus microarrays},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {176},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-176},
doi = {10.1186/1471-2105-11-176},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/StiglicBK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/StivalaSW10,
author = {Alex D. Stivala and
Peter J. Stuckey and
Anthony Wirth},
title = {Fast and accurate protein substructure searching with simulated annealing
and GPUs},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {446},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-446},
doi = {10.1186/1471-2105-11-446},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/StivalaSW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/StoverM10,
author = {Ben C. St{\"{o}}ver and
Kai F. M{\"{u}}ller},
title = {TreeGraph 2: Combining and visualizing evidence from different phylogenetic
analyses},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {7},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-7},
doi = {10.1186/1471-2105-11-7},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/StoverM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/StovgaardAFH10,
author = {Kasper Stovgaard and
Christian Andreetta and
Jesper Ferkinghoff{-}Borg and
Thomas Hamelryck},
title = {Calculation of accurate small angle X-ray scattering curves from coarse-grained
protein models},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {429},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-429},
doi = {10.1186/1471-2105-11-429},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/StovgaardAFH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SturmHLF10,
author = {Martin Sturm and
Michael Hackenberg and
David Langenberger and
Dmitrij Frishman},
title = {TargetSpy: a supervised machine learning approach for microRNA target
prediction},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {292},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-292},
doi = {10.1186/1471-2105-11-292},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SturmHLF10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SugarS10,
author = {Istv{\'{a}}n P. Sug{\'{a}}r and
Stuart C. Sealfon},
title = {Misty Mountain clustering: application to fast unsupervised flow cytometry
gating},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {502},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-502},
doi = {10.1186/1471-2105-11-502},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SugarS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SunC10,
author = {Feng{-}Jie Sun and
Gustavo Caetano{-}Anoll{\'{e}}s},
title = {The ancient history of the structure of ribonuclease {P} and the early
origins of Archaea},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {153},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-153},
doi = {10.1186/1471-2105-11-153},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SunC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SunZBD10,
author = {Youting Sun and
Jianqiu Zhang and
Ulisses M. Braga{-}Neto and
Edward R. Dougherty},
title = {{BPDA} - {A} Bayesian peptide detection algorithm for mass spectrometry},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {490},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-490},
doi = {10.1186/1471-2105-11-490},
timestamp = {Mon, 17 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SunZBD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SunZNKW10,
author = {Xiaoliang Sun and
Yong Zou and
Victoria J. Nikiforova and
J{\"{u}}rgen Kurths and
Dirk Walther},
title = {The complexity of gene expression dynamics revealed by permutation
entropy},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {607},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-607},
doi = {10.1186/1471-2105-11-607},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SunZNKW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SungKS10,
author = {Edon Sung and
Sangsoo Kim and
Whanchul Shin},
title = {Binary image representation of a ligand binding site: its application
to efficient sampling of a conformational ensemble},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {256},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-256},
doi = {10.1186/1471-2105-11-256},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SungKS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SupekV10,
author = {Fran Supek and
Kristian Vlahovicek},
title = {Correction: Comparison of codon usage measures and their applicability
in prediction of microbial gene expressivity},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {463},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-463},
doi = {10.1186/1471-2105-11-463},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SupekV10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SwainMD10,
author = {Martin T. Swain and
Johannes J. Mandel and
Werner Dubitzky},
title = {Comparative study of three commonly used continuous deterministic
methods for modeling gene regulation networks},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {459},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-459},
doi = {10.1186/1471-2105-11-459},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SwainMD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SzaboNMH10,
author = {Adrienn Szab{\'{o}} and
{\'{A}}d{\'{a}}m Nov{\'{a}}k and
Istv{\'{a}}n Mikl{\'{o}}s and
Jotun Hein},
title = {Reticular Alignment: {A} progressive corner-cutting method for multiple
sequence alignment},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {570},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-570},
doi = {10.1186/1471-2105-11-570},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SzaboNMH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TamamesL10,
author = {Javier Tamames and
Victor de Lorenzo},
title = {EnvMine: {A} text-mining system for the automatic extraction of contextual
information},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {294},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-294},
doi = {10.1186/1471-2105-11-294},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TamamesL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TanMNSSFG10,
author = {Wei Tan and
Ravi K. Madduri and
Aleksandra Nenadic and
Stian Soiland{-}Reyes and
Dinanath Sulakhe and
Ian T. Foster and
Carole A. Goble},
title = {caGrid Workflow Toolkit: {A} Taverna based workflow tool for cancer
Grid},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {542},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-542},
doi = {10.1186/1471-2105-11-542},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TanMNSSFG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TangLXC10,
author = {Kailin Tang and
Tong{-}Hua Li and
Wenwei Xiong and
Kai Chen},
title = {Ovarian cancer classification based on dimensionality reduction for
{SELDI-TOF} data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {109},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-109},
doi = {10.1186/1471-2105-11-109},
timestamp = {Sun, 06 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/TangLXC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TaskesenBRWPTRD10,
author = {Erdogan Taskesen and
Renee Beekman and
Jeroen de Ridder and
Bas J. Wouters and
Justine K. Peeters and
Ivo P. Touw and
Marcel J. T. Reinders and
Ruud Delwel},
title = {{HAT:} Hypergeometric Analysis of Tiling-arrays with application to
promoter-GeneChip data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {275},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-275},
doi = {10.1186/1471-2105-11-275},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TaskesenBRWPTRD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TatebeZRHHF10,
author = {Ken Tatebe and
Ahmet Zeytun and
Ruy M. Ribeiro and
Robert Hoffmann and
Kevin S. Harrod and
Christian V. Forst},
title = {Response network analysis of differential gene expression in human
epithelial lung cells during avian influenza infections},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {170},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-170},
doi = {10.1186/1471-2105-11-170},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TatebeZRHHF10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TchagangGBPFP10,
author = {Alain B. Tchagang and
Alexander Gawronski and
Hugo B{\'{e}}rub{\'{e}} and
Sieu Phan and
Fazel Famili and
Youlian Pan},
title = {{GOAL:} {A} software tool for assessing biological significance of
genes groups},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {229},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-229},
doi = {10.1186/1471-2105-11-229},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TchagangGBPFP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TecleMBKM10,
author = {Isaak Y. Tecle and
Naama Menda and
Robert M. Buels and
Esther van der Knaap and
Lukas A. Mueller},
title = {solQTL: a tool for {QTL} analysis, visualization and linking to genomes
at {SGN} database},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {525},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-525},
doi = {10.1186/1471-2105-11-525},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/TecleMBKM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TeichertMBP10,
author = {Florian Teichert and
Jonas Minning and
Ugo Bastolla and
Markus Porto},
title = {High quality protein sequence alignment by combining structural profile
prediction and profile alignment using {SABERTOOTH}},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {251},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-251},
doi = {10.1186/1471-2105-11-251},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TeichertMBP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TempelRTN10,
author = {S{\'{e}}bastien Tempel and
Christine Rousseau and
Fariza Tahi and
Jacques Nicolas},
title = {ModuleOrganizer: detecting modules in families of transposable elements},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {474},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-474},
doi = {10.1186/1471-2105-11-474},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TempelRTN10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TerratPGDGMBBTP10,
author = {S{\'{e}}bastien Terrat and
Eric Peyretaillade and
Olivier Gon{\c{c}}alves and
Eric Dugat{-}Bony and
Fabrice Gravelat and
Anne Mon{\'{e}} and
Corinne Biderre{-}Petit and
Delphine Boucher and
Julien Troquet and
Pierre Peyret},
title = {Detecting variants with Metabolic Design, a new software tool to design
probes for explorative functional {DNA} microarray development},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {478},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-478},
doi = {10.1186/1471-2105-11-478},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TerratPGDGMBBTP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TessonBJ10,
author = {Bruno M. Tesson and
Rainer Breitling and
Ritsert C. Jansen},
title = {DiffCoEx: a simple and sensitive method to find differentially coexpressed
gene modules},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {497},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-497},
doi = {10.1186/1471-2105-11-497},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TessonBJ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ThanguduTSBPM10,
author = {Ratna R. Thangudu and
Manoj Tyagi and
Benjamin A. Shoemaker and
Stephen H. Bryant and
Anna R. Panchenko and
Thomas Madej},
title = {Knowledge-based annotation of small molecule binding sites in proteins},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {365},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-365},
doi = {10.1186/1471-2105-11-365},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ThanguduTSBPM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TheysDBMLLCRSWV10,
author = {Kristof Theys and
Koen Deforche and
Gertjan Beheydt and
Yves Moreau and
Kristel Van Laethem and
Philippe Lemey and
Ricardo Camacho and
Soo{-}Yon Rhee and
Robert W. Shafer and
Eric Van Wijngaerden and
Anne{-}Mieke Vandamme},
title = {Estimating the individualized {HIV-1} genetic barrier to resistance
using a nelfinavir fitness landscape},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {409},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-409},
doi = {10.1186/1471-2105-11-409},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/TheysDBMLLCRSWV10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Thomas10,
author = {Paul D. Thomas},
title = {{GIGA:} a simple, efficient algorithm for gene tree inference in the
genomic age},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {312},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-312},
doi = {10.1186/1471-2105-11-312},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Thomas10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ThomasTCM10,
author = {Reuben Thomas and
Luis de la Torre and
Xiaoqing Chang and
Sanjay Mehrotra},
title = {Validation and characterization of {DNA} microarray gene expression
data distribution and associated moments},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {576},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-576},
doi = {10.1186/1471-2105-11-576},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ThomasTCM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ThorvaldsenFW10,
author = {Steinar Thorvaldsen and
Tor Fl{\aa} and
Nils Willassen},
title = {DeltaProt: a software toolbox for comparative genomics},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {573},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-573},
doi = {10.1186/1471-2105-11-573},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ThorvaldsenFW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TianWCF10,
author = {Jian Tian and
Ningfeng Wu and
Xiaoyu Chu and
Yunliu Fan},
title = {Predicting changes in protein thermostability brought about by single-
or multi-site mutations},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {370},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-370},
doi = {10.1186/1471-2105-11-370},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TianWCF10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TolopkoSEWCRRNSGMS10,
author = {Andrew N. Tolopko and
John P. Sullivan and
Sean D. Erickson and
David Wrobel and
Su L. Chiang and
Katrina Rudnicki and
Stewart Rudnicki and
Jennifer Nale and
Laura M. Selfors and
Dara Greenhouse and
Jeremy Muhlich and
Caroline E. Shamu},
title = {Screensaver: an open source lab information management system {(LIMS)}
for high throughput screening facilities},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {260},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-260},
doi = {10.1186/1471-2105-11-260},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/TolopkoSEWCRRNSGMS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TranHL10,
author = {Linh M. Tran and
Daniel R. Hyduke and
James C. Liao},
title = {Trimming of mammalian transcriptional networks using network component
analysis},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {511},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-511},
doi = {10.1186/1471-2105-11-511},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TranHL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TudorSV10,
author = {Catalina O. Tudor and
Carl J. Schmidt and
K. Vijay{-}Shanker},
title = {eGIFT: Mining Gene Information from the Literature},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {418},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-418},
doi = {10.1186/1471-2105-11-418},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TudorSV10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TullerFK10,
author = {Tamir Tuller and
Yifat Felder and
Martin Kupiec},
title = {Discovering local patterns of co - evolution: computational aspects
and biological examples},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {43},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-43},
doi = {10.1186/1471-2105-11-43},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TullerFK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TulpanAL10,
author = {Dan C. Tulpan and
Mirela Andronescu and
Serge L{\'{e}}ger},
title = {Free energy estimation of short {DNA} duplex hybridizations},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {105},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-105},
doi = {10.1186/1471-2105-11-105},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TulpanAL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/UchikogaH10,
author = {Nobuyuki Uchikoga and
Takatsugu Hirokawa},
title = {Analysis of protein-protein docking decoys using interaction fingerprints:
application to the reconstruction of CaM-ligand complexes},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {236},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-236},
doi = {10.1186/1471-2105-11-236},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/UchikogaH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/UebePKSER10,
author = {Steffen Uebe and
Francesca Pasutto and
Mandy Krumbiegel and
Denny Schanze and
Arif B. Ekici and
Andr{\'{e}} Reis},
title = {GPFrontend and GPGraphics: graphical analysis tools for genetic association
studies},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {472},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-472},
doi = {10.1186/1471-2105-11-472},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/UebePKSER10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VainshteinSBHDM10,
author = {Yevhen Vainshtein and
Mayka Sanchez and
Alvis Brazma and
Matthias W. Hentze and
Thomas Dandekar and
Martina U. Muckenthaler},
title = {The IronChip evaluation package: a package of perl modules for robust
analysis of custom microarrays},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {112},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-112},
doi = {10.1186/1471-2105-11-112},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/VainshteinSBHDM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ValavanisMGN10,
author = {Ioannis K. Valavanis and
Stavroula G. Mougiakakou and
Keith A. Grimaldi and
Konstantina S. Nikita},
title = {A multifactorial analysis of obesity as {CVD} risk factor: Use of
neural network based methods in a nutrigenetics context},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {453},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-453},
doi = {10.1186/1471-2105-11-453},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ValavanisMGN10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VeeramalaiGV10,
author = {Mallika Veeramalai and
David R. Gilbert and
Gabriel Valiente},
title = {An optimized {TOPS+} comparison method for enhanced {TOPS} models},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {138},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-138},
doi = {10.1186/1471-2105-11-138},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/VeeramalaiGV10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Veksler-LublinskySKZ10,
author = {Isana Veksler{-}Lublinsky and
Yonat Shemer{-}Avni and
Klara Kedem and
Michal Ziv{-}Ukelson},
title = {Gene bi-targeting by viral and human miRNAs},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {249},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-249},
doi = {10.1186/1471-2105-11-249},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Veksler-LublinskySKZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VenselaarBKHV10,
author = {Hanka Venselaar and
Tim A. H. te Beek and
Remko K. P. Kuipers and
Maarten L. Hekkelman and
Gert Vriend},
title = {Protein structure analysis of mutations causing inheritable diseases.
An e-Science approach with life scientist friendly interfaces},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {548},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-548},
doi = {10.1186/1471-2105-11-548},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/VenselaarBKHV10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VirgilioBNM10,
author = {Massimiliano Virgilio and
Thierry Backeljau and
Bruno Nevado and
Marc De Meyer},
title = {Comparative performances of {DNA} barcoding across insect orders},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {206},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-206},
doi = {10.1186/1471-2105-11-206},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/VirgilioBNM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VitiMTBBRM10,
author = {Federica Viti and
Ivan Merelli and
Mieke Timmermans and
Michael den Bakker and
Francesco Beltrame and
Peter Riegman and
Luciano Milanesi},
title = {Semi-automatic identification of punching areas for tissue microarray
building: the tubular breast cancer pilot study},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {566},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-566},
doi = {10.1186/1471-2105-11-566},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/VitiMTBBRM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Vogt10,
author = {Lars Vogt},
title = {Spatio-structural granularity of biological material entities},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {289},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-289},
doi = {10.1186/1471-2105-11-289},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Vogt10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VyasNMSKGKRS10,
author = {Jay Vyas and
Ronald J. Nowling and
Thomas Meusburger and
David P. Sargeant and
Krishna Kadaveru and
Michael R. Gryk and
Vamsi Kundeti and
Sanguthevar Rajasekaran and
Martin R. Schiller},
title = {MimoSA: a system for minimotif annotation},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {328},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-328},
doi = {10.1186/1471-2105-11-328},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/VyasNMSKGKRS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WallKFPPT10,
author = {Dennis P. Wall and
Parul Kudtarkar and
Vincent A. Fusaro and
Rimma Pivovarov and
Prasad Patil and
Peter J. Tonellato},
title = {Cloud computing for comparative genomics},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {259},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-259},
doi = {10.1186/1471-2105-11-259},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WallKFPPT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WallaceTLBS10,
author = {Byron C. Wallace and
Thomas A. Trikalinos and
Joseph Lau and
Carla E. Brodley and
Christopher H. Schmid},
title = {Semi-automated screening of biomedical citations for systematic reviews},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {55},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-55},
doi = {10.1186/1471-2105-11-55},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WallaceTLBS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Wang10,
author = {Junbai Wang},
title = {The effect of prior assumptions over the weights in BayesPI with application
to study protein-DNA interactions from ChIP-based high-throughput
data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {412},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-412},
doi = {10.1186/1471-2105-11-412},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Wang10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangLHMAC10,
author = {Yu{-}Chao Wang and
Chung{-}Yu Lan and
Wen{-}Ping Hsieh and
Luis A. Murillo and
Nina Agabian and
Bor{-}Sen Chen},
title = {Global screening of potential \emph{Candida albicans }biofilm-related
transcription factors via network comparison},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {53},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-53},
doi = {10.1186/1471-2105-11-53},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WangLHMAC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangS10,
author = {Liya Wang and
Lincoln D. Stein},
title = {Localizing triplet periodicity in {DNA} and cDNA sequences},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {550},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-550},
doi = {10.1186/1471-2105-11-550},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WangS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangSKSLNP10,
author = {Peng Wang and
John Sidney and
Yohan Kim and
Alessandro Sette and
Ole Lund and
Morten Nielsen and
Bj{\"{o}}rn Peters},
title = {Peptide binding predictions for {HLA} DR, {DP} and {DQ} molecules},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {568},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-568},
doi = {10.1186/1471-2105-11-568},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WangSKSLNP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangSS10,
author = {Shiliang Wang and
Jaideep P. Sundaram and
David Spiro},
title = {VIGOR, an annotation program for small viral genomes},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {451},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-451},
doi = {10.1186/1471-2105-11-451},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WangSS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangT10,
author = {Junbai Wang and
Tianhai Tian},
title = {Quantitative model for inferring dynamic regulation of the tumour
suppressor gene p53},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {36},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-36},
doi = {10.1186/1471-2105-11-36},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WangT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangVPRZ10,
author = {Bing Wang and
Steve Valentine and
Manolo Plasencia and
Sriram Raghuraman and
Xiang Zhang},
title = {Artificial neural networks for the prediction of peptide drift time
in ion mobility mass spectrometry},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {182},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-182},
doi = {10.1186/1471-2105-11-182},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WangVPRZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangXLWZHC10,
author = {Chen Wang and
Jianhua Xuan and
Huai Li and
Yue Joseph Wang and
Ming Zhan and
Eric P. Hoffman and
Robert Clarke},
title = {Knowledge-guided gene ranking by coordinative component analysis},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {162},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-162},
doi = {10.1186/1471-2105-11-162},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WangXLWZHC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangXZWZ10,
author = {Congmao Wang and
Jie Xu and
Dasheng Zhang and
Zoe A. Wilson and
Dabing Zhang},
title = {An effective approach for identification of \emph{in vivo }protein-DNA
binding sites from paired-end ChIP-Seq data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {81},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-81},
doi = {10.1186/1471-2105-11-81},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WangXZWZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangYJXC10,
author = {Yaqiang Wang and
Zhonghua Yu and
Yongguang Jiang and
Kaikuo Xu and
Xia Chen},
title = {Automatic symptom name normalization in clinical records of traditional
Chinese medicine},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {40},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-40},
doi = {10.1186/1471-2105-11-40},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WangYJXC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangZZZG10,
author = {Jing Wang and
Xianxiao Zhou and
Jing Zhu and
Chenggui Zhou and
Zheng Guo},
title = {Revealing and avoiding bias in semantic similarity scores for protein
pairs},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {290},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-290},
doi = {10.1186/1471-2105-11-290},
timestamp = {Tue, 12 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WangZZZG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WarrenAFS10,
author = {Andrew S. Warren and
Jeremy S. Archuleta and
Wu{-}chun Feng and
Jo{\~{a}}o Carlos Setubal},
title = {Missing genes in the annotation of prokaryotic genomes},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {131},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-131},
doi = {10.1186/1471-2105-11-131},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WarrenAFS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Webb-RobertsonRO10,
author = {Bobbie{-}Jo M. Webb{-}Robertson and
Kyle G. Ratuiste and
Christopher S. Oehmen},
title = {Physicochemical property distributions for accurate and rapid pairwise
protein homology detection},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {145},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-145},
doi = {10.1186/1471-2105-11-145},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Webb-RobertsonRO10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WeekesKBWGW10,
author = {Dana Weekes and
S. Sri Krishna and
Constantina Bakolitsa and
Ian A. Wilson and
Adam Godzik and
John C. Wooley},
title = {{TOPSAN:} a collaborative annotation environment for structural genomics},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {426},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-426},
doi = {10.1186/1471-2105-11-426},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WeekesKBWGW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WegmannLNE10,
author = {Daniel Wegmann and
Christoph Leuenberger and
Samuel Neuenschwander and
Laurent Excoffier},
title = {ABCtoolbox: a versatile toolkit for approximate Bayesian computations},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {116},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-116},
doi = {10.1186/1471-2105-11-116},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WegmannLNE10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WeingartPGH10,
author = {Uri Weingart and
Erez Persi and
Uri Gophna and
David Horn},
title = {Deriving enzymatic and taxonomic signatures of metagenomes from short
read data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {390},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-390},
doi = {10.1186/1471-2105-11-390},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WeingartPGH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WeissensteinerSSKB10,
author = {Hansi Wei{\ss}ensteiner and
Sebastian Sch{\"{o}}nherr and
G{\"{u}}nther Specht and
Florian Kronenberg and
Anita Brandst{\"{a}}tter},
title = {eCOMPAGT integrates mtDNA: import, validation and export of mitochondrial
{DNA} profiles for population genetics, tumour dynamics and genotype-phenotype
association studies},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {122},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-122},
doi = {10.1186/1471-2105-11-122},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WeissensteinerSSKB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WengSHWTW10,
author = {Francis C. Weng and
Chien{-}Hao Su and
Ming{-}Tsung Hsu and
Tse{-}Yi Wang and
Huai{-}Kuang Tsai and
Daryi Wang},
title = {Reanalyze unassigned reads in Sanger based metagenomic data using
conserved gene adjacency},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {565},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-565},
doi = {10.1186/1471-2105-11-565},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WengSHWTW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WenigO10,
author = {Philip Wenig and
Juergen Odermatt},
title = {OpenChrom: a cross-platform open source software for the mass spectrometric
analysis of chromatographic data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {405},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-405},
doi = {10.1186/1471-2105-11-405},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WenigO10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WhiteNNGKP10,
author = {James Robert White and
Saket Navlakha and
Niranjan Nagarajan and
Mohammadreza Ghodsi and
Carl Kingsford and
Mihai Pop},
title = {Alignment and clustering of phylogenetic markers - implications for
microbial diversity studies},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {152},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-152},
doi = {10.1186/1471-2105-11-152},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WhiteNNGKP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WilliamsT10,
author = {Andrew Williams and
Errol M. Thomson},
title = {Effects of scanning sensitivity and multiple scan algorithms on microarray
data quality},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {127},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-127},
doi = {10.1186/1471-2105-11-127},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WilliamsT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WinhamSM10,
author = {Stacey J. Winham and
Andrew J. Slater and
Alison A. Motsinger{-}Reif},
title = {A comparison of internal validation techniques for multifactor dimensionality
reduction},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {394},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-394},
doi = {10.1186/1471-2105-11-394},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WinhamSM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WolfSMN10,
author = {Sebastian Wolf and
Stephan Schmidt and
Matthias M{\"{u}}ller{-}Hannemann and
Steffen Neumann},
title = {In silico fragmentation for computer assisted identification of metabolite
mass spectra},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {148},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-148},
doi = {10.1186/1471-2105-11-148},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WolfSMN10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WolfgruberP10,
author = {Thomas K. Wolfgruber and
Gernot G. Presting},
title = {JunctionViewer: customizable annotation software for repeat-rich genomic
regions},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {23},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-23},
doi = {10.1186/1471-2105-11-23},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WolfgruberP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WongSD10,
author = {Jason W. H. Wong and
Alexander B. Schwahn and
Kevin M. Downard},
title = {FluTyper-an algorithm for automated typing and subtyping of the influenza
virus from high resolution mass spectral data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {266},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-266},
doi = {10.1186/1471-2105-11-266},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WongSD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WuJRDSMW10,
author = {Zhijin Wu and
Bethany D. Jenkins and
Tatiana A. Rynearson and
Sonya T. Dyhrman and
Mak A. Saito and
Melissa Mercier and
LeAnn P. Whitney},
title = {Empirical Bayes Analysis of Sequencing-based Transcriptional Profiling
without Replicates},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {564},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-564},
doi = {10.1186/1471-2105-11-564},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WuJRDSMW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WuWLZHMLRZH10,
author = {Xianming Wu and
Songfeng Wu and
Dong Li and
Jiyang Zhang and
Lin Hou and
Jie Ma and
Wanlin Liu and
Daming Ren and
Yunping Zhu and
Fuchu He},
title = {Computational identification of rare codons of \emph{Escherichia coli
}based on codon pairs preference},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {61},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-61},
doi = {10.1186/1471-2105-11-61},
timestamp = {Tue, 20 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WuWLZHMLRZH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/XiFXFWW10,
author = {Liqun Xi and
Yvonne Fondufe{-}Mittendorf and
Lei Xia and
Jared Flatow and
Jonathan Widom and
Ji{-}Ping Wang},
title = {Predicting nucleosome positioning using a duration Hidden Markov Model},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {346},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-346},
doi = {10.1186/1471-2105-11-346},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/XiFXFWW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/XiaMW10,
author = {Xiaoqin Xia and
Michael McClelland and
Yipeng Wang},
title = {TabSQL: a MySQL tool to facilitate mapping user data to public databases},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {342},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-342},
doi = {10.1186/1471-2105-11-342},
timestamp = {Wed, 05 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/XiaMW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/XiaZSH10,
author = {Junfeng Xia and
Xing{-}Ming Zhao and
Jiangning Song and
De{-}Shuang Huang},
title = {{APIS:} accurate prediction of hot spots in protein interfaces by
combining protrusion index with solvent accessibility},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {174},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-174},
doi = {10.1186/1471-2105-11-174},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/XiaZSH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/XieH10,
author = {Zhong{-}Ru Xie and
Ming{-}Jing Hwang},
title = {An interaction-motif-based scoring function for protein-ligand docking},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {298},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-298},
doi = {10.1186/1471-2105-11-298},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/XieH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/XiongWBXJS10,
author = {Bing Xiong and
Jie Wu and
David L. Burk and
Mengzhu Xue and
Hualiang Jiang and
Jingkang Shen},
title = {{BSSF:} a fingerprint based ultrafast binding site similarity search
and function analysis server},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {47},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-47},
doi = {10.1186/1471-2105-11-47},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/XiongWBXJS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/XuC10,
author = {Wayne Wenzhong Xu and
Clay J. Carter},
title = {Parallel multiplicity and error discovery rate {(EDR)} in microarray
experiments},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {465},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-465},
doi = {10.1186/1471-2105-11-465},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/XuC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/XuF10,
author = {Hua Xu and
Michael A. Freitas},
title = {A Dynamic Noise Level Algorithm for Spectral Screening of Peptide
{MS/MS} Spectra},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {436},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-436},
doi = {10.1186/1471-2105-11-436},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/XuF10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/XuHMB10,
author = {Xiaojiang Xu and
Stephen Hoang and
Marty W. Mayo and
Stefan Bekiranov},
title = {Application of machine learning methods to histone methylation ChIP-Seq
data reveals H4R3me2 globally represses gene expression},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {396},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-396},
doi = {10.1186/1471-2105-11-396},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/XuHMB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YangCCC10,
author = {Cheng{-}Hong Yang and
Yu{-}Huei Cheng and
Li{-}Yeh Chuang and
Hsueh{-}Wei Chang},
title = {Confronting two-pair primer design for enzyme-free {SNP} genotyping
based on a genetic algorithm},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {509},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-509},
doi = {10.1186/1471-2105-11-509},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/YangCCC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YangHZZ10,
author = {Pengyi Yang and
Joshua Wing Kei Ho and
Albert Y. Zomaya and
Bing Bing Zhou},
title = {A genetic ensemble approach for gene-gene interaction identification},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {524},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-524},
doi = {10.1186/1471-2105-11-524},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YangHZZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YanofskyB10,
author = {Corey M. Yanofsky and
David R. Bickel},
title = {Validation of differential gene expression algorithms: Application
comparing fold-change estimation to hypothesis testing},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {63},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-63},
doi = {10.1186/1471-2105-11-63},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YanofskyB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YePLRT10,
author = {Jingjing Ye and
Adam Pavl{\'{\i}}cek and
Elizabeth A. Lunney and
Paul A. Rejto and
Chi{-}Hse Teng},
title = {Statistical method on nonrandom clustering with application to somatic
mutations in cancer},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {11},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-11},
doi = {10.1186/1471-2105-11-11},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YePLRT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Yeang10,
author = {Chen{-}Hsiang Yeang},
title = {An integrated analysis of molecular aberrations in {NCI-60} cell lines},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {495},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-495},
doi = {10.1186/1471-2105-11-495},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Yeang10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YepesA10,
author = {Antonio Jimeno{-}Yepes and
Alan R. Aronson},
title = {Knowledge-based biomedical word sense disambiguation: comparison of
approaches},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {569},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-569},
doi = {10.1186/1471-2105-11-569},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YepesA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YouYHHZ10,
author = {Zhuhong You and
Zheng Yin and
Kyungsook Han and
De{-}Shuang Huang and
Xiaobo Zhou},
title = {A semi-supervised learning approach to predict synthetic genetic interactions
by combining functional and topological properties of functional gene
network},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {343},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-343},
doi = {10.1186/1471-2105-11-343},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YouYHHZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Yu10,
author = {Tianwei Yu},
title = {An exploratory data analysis method to reveal modular latent structures
in high-throughput data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {440},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-440},
doi = {10.1186/1471-2105-11-440},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Yu10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Yu10a,
author = {GongXin Yu},
title = {\emph{Gen}\({}^{\mbox{\emph{Htr}}}\): a tool for comparative assessment
of genetic heterogeneity in microbial genomes generated by massive
short-read sequencing},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {508},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-508},
doi = {10.1186/1471-2105-11-508},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Yu10a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YuCC10,
author = {Chi{-}Yuan Yu and
Lih{-}Ching Chou and
Darby Tien{-}Hao Chang},
title = {Predicting protein-protein interactions in unbalanced data using the
primary structure of proteins},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {167},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-167},
doi = {10.1186/1471-2105-11-167},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YuCC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YuD10,
author = {Lianbo Yu and
Rebecca W. Doerge},
title = {A semi-nonparametric mixture model for selecting functionally consistent
proteins},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {486},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-486},
doi = {10.1186/1471-2105-11-486},
timestamp = {Sun, 08 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/YuD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YuFDTSMM10,
author = {Shi Yu and
Tillmann Falck and
Anneleen Daemen and
L{\'{e}}on{-}Charles Tranchevent and
Johan A. K. Suykens and
Bart De Moor and
Yves Moreau},
title = {L2-norm multiple kernel learning and its application to biomedical
data fusion},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {309},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-309},
doi = {10.1186/1471-2105-11-309},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/YuFDTSMM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YuP10,
author = {Tianwei Yu and
Hesen Peng},
title = {Quantification and deconvolution of asymmetric {LC-MS} peaks using
the bi-Gaussian mixture model and statistical model selection},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {559},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-559},
doi = {10.1186/1471-2105-11-559},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/YuP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YuTMM10,
author = {Shi Yu and
L{\'{e}}on{-}Charles Tranchevent and
Bart De Moor and
Yves Moreau},
title = {Gene prioritization and clustering by multi-view text mining},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {28},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-28},
doi = {10.1186/1471-2105-11-28},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/YuTMM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZacherKT10,
author = {Benedikt Zacher and
Pei Fen Kuan and
Achim Tresch},
title = {Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {194},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-194},
doi = {10.1186/1471-2105-11-194},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZacherKT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZareSGB10,
author = {Habil Zare and
Parisa Shooshtari and
Arvind Gupta and
Ryan Remy Brinkman},
title = {Data reduction for spectral clustering to analyze high throughput
flow cytometry data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {403},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-403},
doi = {10.1186/1471-2105-11-403},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZareSGB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZaretzkiGBA10,
author = {Russell L. Zaretzki and
Michael A. Gilchrist and
William M. Briggs and
Artin Armagan},
title = {Bias correction and Bayesian analysis of aggregate counts in {SAGE}
libraries},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {72},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-72},
doi = {10.1186/1471-2105-11-72},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ZaretzkiGBA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZeiselAKD10,
author = {Amit Zeisel and
Amnon Amir and
Wolfgang J. K{\"{o}}stler and
Eytan Domany},
title = {Intensity dependent estimation of noise in microarrays improves detection
of differentially expressed genes},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {400},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-400},
doi = {10.1186/1471-2105-11-400},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZeiselAKD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZengZLY10,
author = {Jia Zeng and
Shanfeng Zhu and
Alan Wee{-}Chung Liew and
Hong Yan},
title = {Multiconstrained gene clustering based on generalized projections},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {164},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-164},
doi = {10.1186/1471-2105-11-164},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZengZLY10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangEFZZ10,
author = {Wensheng Zhang and
Andrea Edwards and
Wei Fan and
Dongxiao Zhu and
Kun Zhang},
title = {svdPPCS: an effective singular value decomposition-based method for
conserved and divergent co-expression gene module identification},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {338},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-338},
doi = {10.1186/1471-2105-11-338},
timestamp = {Thu, 09 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangEFZZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangG10,
author = {Hong{-}Xuan Zhang and
John Goutsias},
title = {A comparison of approximation techniques for variance-based sensitivity
analysis of biochemical reaction systems},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {246},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-246},
doi = {10.1186/1471-2105-11-246},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangG10a,
author = {Zhengdong D. Zhang and
Mark B. Gerstein},
title = {Detection of copy number variation from array intensity and sequencing
read depth using a stepwise Bayesian model},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {539},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-539},
doi = {10.1186/1471-2105-11-539},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangG10a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangL10a,
author = {Minlu Zhang and
Long J. Lu},
title = {Investigating the validity of current network analysis on static conglomerate
networks by protein network stratification},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {466},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-466},
doi = {10.1186/1471-2105-11-466},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangL10a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangLM10,
author = {Zong Hong Zhang and
Hwee Kuan Lee and
Ivana Mihalek},
title = {Reduced representation of protein structure: implications on efficiency
and scope of detection of structural similarity},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {155},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-155},
doi = {10.1186/1471-2105-11-155},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangLM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangLPS10,
author = {Shaoqiang Zhang and
Shan Li and
Phuc T. Pham and
Zhengchang Su},
title = {Simultaneous prediction of transcription factor binding sites in a
group of prokaryotic genomes},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {397},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-397},
doi = {10.1186/1471-2105-11-397},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangLPS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangLXP10,
author = {Shao{-}Wu Zhang and
Yao{-}Jun Li and
Li C. Xia and
Quan Pan},
title = {PPLook: an automated data mining tool for protein-protein interaction},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {326},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-326},
doi = {10.1186/1471-2105-11-326},
timestamp = {Fri, 24 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangLXP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangZLYTTYKAF10,
author = {Ming Zhang and
Yudong Zhang and
Li Liu and
Lijuan Yu and
Shirley Tsang and
Jing Tan and
Wenhua Yao and
Manjit S. Kang and
Yongqiang An and
Xingming Fan},
title = {Gene Expression Browser: large-scale and cross-experiment microarray
data integration, management, search {\&} visualization},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {433},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-433},
doi = {10.1186/1471-2105-11-433},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangZLYTTYKAF10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhouCWLWFSH10,
author = {Chen Zhou and
Hao Chi and
Leheng Wang and
You Li and
Yan{-}Jie Wu and
Yan Fu and
Ruixiang Sun and
Si{-}Min He},
title = {Speeding up tandem mass spectrometry-based database searching by longest
common prefix},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {577},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-577},
doi = {10.1186/1471-2105-11-577},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhouCWLWFSH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhuGLPLLG10,
author = {Lihua Julie Zhu and
Claude Gazin and
Nathan D. Lawson and
Herv{\'{e}} Pag{\`{e}}s and
Simon M. Lin and
David S. Lapointe and
Michael R. Green},
title = {ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip
data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {237},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-237},
doi = {10.1186/1471-2105-11-237},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhuGLPLLG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhuMH10,
author = {Qianqian Zhu and
Jeffrey C. Miecznikowski and
Marc S. Halfon},
title = {Preferred analysis methods for Affymetrix GeneChips. {II.} An expanded,
balanced, wholly-defined spike-in dataset},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {285},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-285},
doi = {10.1186/1471-2105-11-285},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhuMH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZierkeB10,
author = {Stephanie Zierke and
Jason D. Bakos},
title = {{FPGA} acceleration of the phylogenetic likelihood function for Bayesian
{MCMC} inference methods},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {184},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-184},
doi = {10.1186/1471-2105-11-184},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZierkeB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZimmermannG10,
author = {Karel Zimmermann and
Jean{-}Fran{\c{c}}ois Gibrat},
title = {Amino acid "little Big Bang": Representing amino acid substitution
matrices as dot products of Euclidian vectors},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {4},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-4},
doi = {10.1186/1471-2105-11-4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZimmermannG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZoppoliMC10,
author = {Pietro Zoppoli and
Sandro Morganella and
Michele Ceccarelli},
title = {TimeDelay-ARACNE: Reverse engineering of gene networks from time-course
data by an information theoretic approach},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {154},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-154},
doi = {10.1186/1471-2105-11-154},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZoppoliMC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZouLGF10,
author = {Cunlu Zou and
Christophe Ladroue and
Shuixia Guo and
Jianfeng Feng},
title = {Identifying interactions in the time and frequency domains in local
and global networks - {A} Granger Causality Approach},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {337},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-337},
doi = {10.1186/1471-2105-11-337},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZouLGF10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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