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@article{DBLP:journals/bioinformatics/0003LC0GS18,
author = {Florian Schmidt and
Markus List and
Engin Cukuroglu and
Sebastian K{\"{o}}hler and
Jonathan G{\"{o}}ke and
Marcel H. Schulz},
title = {An ontology-based method for assessing batch effect adjustment approaches
in heterogeneous datasets},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i908--i916},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty553},
doi = {10.1093/BIOINFORMATICS/BTY553},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/0003LC0GS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/0007YW0W18,
author = {Min Li and
Jie Yang and
Fang{-}Xiang Wu and
Yi Pan and
Jianxin Wang},
title = {DyNetViewer: a Cytoscape app for dynamic network construction, analysis
and visualization},
journal = {Bioinform.},
volume = {34},
number = {9},
pages = {1597--1599},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx821},
doi = {10.1093/BIOINFORMATICS/BTX821},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/0007YW0W18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AbdellahHELAMS18,
author = {Marwan Abdellah and
Juan Hernando and
Stefan Eilemann and
Samuel Lapere and
Nicolas Antille and
Henry Markram and
Felix Sch{\"{u}}rmann},
title = {NeuroMorphoVis: a collaborative framework for analysis and visualization
of neuronal morphology skeletons reconstructed from microscopy stacks},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i574--i582},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty231},
doi = {10.1093/BIOINFORMATICS/BTY231},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AbdellahHELAMS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AbenWSKMSW18,
author = {Nanne Aben and
Johan A. Westerhuis and
Yipeng Song and
Henk A. L. Kiers and
Magali Michaut and
Age K. Smilde and
Lodewyk F. A. Wessels},
title = {iTOP: inferring the topology of omics data},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i988--i996},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty636},
doi = {10.1093/BIOINFORMATICS/BTY636},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AbenWSKMSW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AdamsSCCC18,
author = {Richard H. Adams and
Drew R. Schield and
Daren C. Card and
Andrew Corbin and
Todd A. Castoe},
title = {ThetaMater: Bayesian estimation of population size parameter {\texttheta}
from genomic data},
journal = {Bioinform.},
volume = {34},
number = {6},
pages = {1072--1073},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx733},
doi = {10.1093/BIOINFORMATICS/BTX733},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AdamsSCCC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AdhikariHC18,
author = {Badri Adhikari and
Jie Hou and
Jianlin Cheng},
title = {{DNCON2:} improved protein contact prediction using two-level deep
convolutional neural networks},
journal = {Bioinform.},
volume = {34},
number = {9},
pages = {1466--1472},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx781},
doi = {10.1093/BIOINFORMATICS/BTX781},
timestamp = {Tue, 27 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AdhikariHC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AfsariGCFKSKFZH18,
author = {Bahman Afsari and
Theresa Guo and
Michael Considine and
Liliana Florea and
Luciane T. Kagohara and
Genevieve L. Stein{-}O'Brien and
Dylan Kelley and
Emily Flam and
Kristina D. Zambo and
Patrick K. Ha and
Donald Geman and
Michael F. Ochs and
Joseph A. Califano and
Daria A. Gaykalova and
Alexander V. Favorov and
Elana J. Fertig},
title = {Splice Expression Variation Analysis {(SEVA)} for inter-tumor heterogeneity
of gene isoform usage in cancer},
journal = {Bioinform.},
volume = {34},
number = {11},
pages = {1859--1867},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty004},
doi = {10.1093/BIOINFORMATICS/BTY004},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AfsariGCFKSKFZH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AghaeepourSKBSC18,
author = {Nima Aghaeepour and
Erin F. Simonds and
David J. H. F. Knapp and
Robert V. Bruggner and
Karen Sachs and
Anthony Culos and
Pier Federico Gherardini and
Nikolay Samusik and
Gabriela K. Fragiadakis and
Sean Bendall and
Brice Gaudilliere and
Martin S. Angst and
Connie J. Eaves and
William A. Weiss and
Wendy J. Fantl and
Garry P. Nolan},
title = {GateFinder: projection-based gating strategy optimization for flow
and mass cytometry},
journal = {Bioinform.},
volume = {34},
number = {23},
pages = {4131--4133},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty430},
doi = {10.1093/BIOINFORMATICS/BTY430},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AghaeepourSKBSC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AhmedWC18,
author = {Ibrahim Ahmed and
Peter J. Witbooi and
Alan Christoffels},
title = {Prediction of human-Bacillus anthracis protein-protein interactions
using multi-layer neural network},
journal = {Bioinform.},
volume = {34},
number = {24},
pages = {4159--4164},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty504},
doi = {10.1093/BIOINFORMATICS/BTY504},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AhmedWC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AhnKV18,
author = {Soyeon Ahn and
Ziqi Ke and
Haris Vikalo},
title = {Viral quasispecies reconstruction via tensor factorization with successive
read removal},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i23--i31},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty291},
doi = {10.1093/BIOINFORMATICS/BTY291},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AhnKV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AijoMB18,
author = {Tarmo {\"{A}}ij{\"{o}} and
Christian L. M{\"{u}}ller and
Richard Bonneau},
title = {Temporal probabilistic modeling of bacterial compositions derived
from 16S rRNA sequencing},
journal = {Bioinform.},
volume = {34},
number = {3},
pages = {372--380},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx549},
doi = {10.1093/BIOINFORMATICS/BTX549},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AijoMB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AkersSL18,
author = {Nicholas K. Akers and
Eric E. Schadt and
Bojan Losic},
title = {{STAR} Chimeric Post for rapid detection of circular {RNA} and fusion
transcripts},
journal = {Bioinform.},
volume = {34},
number = {14},
pages = {2364--2370},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty091},
doi = {10.1093/BIOINFORMATICS/BTY091},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AkersSL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Alanis-LobatoMA18,
author = {Gregorio Alanis{-}Lobato and
Pablo Mier and
Miguel A. Andrade{-}Navarro},
title = {The latent geometry of the human protein interaction network},
journal = {Bioinform.},
volume = {34},
number = {16},
pages = {2826--2834},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty206},
doi = {10.1093/BIOINFORMATICS/BTY206},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Alanis-LobatoMA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlbayrakKGF18,
author = {Levent Albayrak and
Kamil Khanipov and
George Golovko and
Yuriy Fofanov},
title = {Detection of multi-dimensional co-exclusion patterns in microbial
communities},
journal = {Bioinform.},
volume = {34},
number = {21},
pages = {3695--3701},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty414},
doi = {10.1093/BIOINFORMATICS/BTY414},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AlbayrakKGF18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AliKWA18,
author = {Mehreen Ali and
Suleiman A. Khan and
Krister Wennerberg and
Tero Aittokallio},
title = {Global proteomics profiling improves drug sensitivity prediction:
results from a multi-omics, pan-cancer modeling approach},
journal = {Bioinform.},
volume = {34},
number = {8},
pages = {1353--1362},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx766},
doi = {10.1093/BIOINFORMATICS/BTX766},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AliKWA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlmodaresiSSP18,
author = {Fatemeh Almodaresi and
Hirak Sarkar and
Avi Srivastava and
Rob Patro},
title = {A space and time-efficient index for the compacted colored de Bruijn
graph},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i169--i177},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty292},
doi = {10.1093/BIOINFORMATICS/BTY292},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AlmodaresiSSP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlshahraniH18,
author = {Mona Alshahrani and
Robert Hoehndorf},
title = {Semantic Disease Gene Embeddings (SmuDGE): phenotype-based disease
gene prioritization without phenotypes},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i901--i907},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty559},
doi = {10.1093/BIOINFORMATICS/BTY559},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AlshahraniH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlvarezLLO18,
author = {Roberto Vera Alvarez and
Shan Li and
David Landsman and
Ivan Ovcharenko},
title = {SNPDelScore: combining multiple methods to score deleterious effects
of noncoding mutations in the human genome},
journal = {Bioinform.},
volume = {34},
number = {2},
pages = {289--291},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx583},
doi = {10.1093/BIOINFORMATICS/BTX583},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AlvarezLLO18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AmarVLS18,
author = {David Amar and
Amir Vizel and
Carmit Levy and
Ron Shamir},
title = {{ADEPTUS:} a discovery tool for disease prediction, enrichment and
network analysis based on profiles from many diseases},
journal = {Bioinform.},
volume = {34},
number = {11},
pages = {1959--1961},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty027},
doi = {10.1093/BIOINFORMATICS/BTY027},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AmarVLS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AmbrosiniGB18,
author = {Giovanna Ambrosini and
Romain Groux and
Philipp Bucher},
title = {PWMScan: a fast tool for scanning entire genomes with a position-specific
weight matrix},
journal = {Bioinform.},
volume = {34},
number = {14},
pages = {2483--2484},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty127},
doi = {10.1093/BIOINFORMATICS/BTY127},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AmbrosiniGB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AmiryousefiHP18,
author = {Ali Amiryousefi and
Jaakko Hyv{\"{o}}nen and
Peter Poczai},
title = {IRscope: an online program to visualize the junction sites of chloroplast
genomes},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {3030--3031},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty220},
doi = {10.1093/BIOINFORMATICS/BTY220},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AmiryousefiHP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AnashkinaKKMA18,
author = {Anastasia A. Anashkina and
Yuri Kravatsky and
Eugene N. Kuznetsov and
Alexander A. Makarov and
Alexei A. Adzhubei},
title = {Meta-server for automatic analysis, scoring and ranking of docking
models},
journal = {Bioinform.},
volume = {34},
number = {2},
pages = {297--299},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx591},
doi = {10.1093/BIOINFORMATICS/BTX591},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AnashkinaKKMA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AndreattaTYGP018,
author = {Massimo Andreatta and
Thomas Trolle and
Zhen Yan and
Jason A. Greenbaum and
Bjoern Peters and
Morten Nielsen},
title = {An automated benchmarking platform for {MHC} class {II} binding prediction
methods},
journal = {Bioinform.},
volume = {34},
number = {9},
pages = {1522--1528},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx820},
doi = {10.1093/BIOINFORMATICS/BTX820},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AndreattaTYGP018.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AndronovMOOHVK18,
author = {Leonid Andronov and
Jonathan Michalon and
Khalid Ouararhni and
Igor Orlov and
Ali Hamiche and
Jean{-}Luc Vonesch and
Bruno P. Klaholz},
title = {3DClusterViSu: 3D clustering analysis of super-resolution microscopy
data by 3D Voronoi tessellations},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {3004--3012},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty200},
doi = {10.1093/BIOINFORMATICS/BTY200},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AndronovMOOHVK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AndruschDKTKORN18,
author = {Andreas Andrusch and
Piotr Wojtek Dabrowski and
Jeanette Klenner and
Simon H. Tausch and
Claudia Kohl and
Abdalla Osman and
Bernhard Y. Renard and
Andreas Nitsche},
title = {PAIPline: pathogen identification in metagenomic and clinical next
generation sequencing samples},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i715--i721},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty595},
doi = {10.1093/BIOINFORMATICS/BTY595},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AndruschDKTKORN18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Angione18,
author = {Claudio Angione},
title = {Integrating splice-isoform expression into genome-scale models characterizes
breast cancer metabolism},
journal = {Bioinform.},
volume = {34},
number = {3},
pages = {494--501},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx562},
doi = {10.1093/BIOINFORMATICS/BTX562},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Angione18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AnilSAS18,
author = {Anandashankar Anil and
Rapolas Spalinskas and
{\"{O}}rjan {\AA}kerborg and
Pelin Sahl{\'{e}}n},
title = {HiCapTools: a software suite for probe design and proximity detection
for targeted chromosome conformation capture applications},
journal = {Bioinform.},
volume = {34},
number = {4},
pages = {675--677},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx625},
doi = {10.1093/BIOINFORMATICS/BTX625},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AnilSAS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AnsariolaMK18,
author = {Mitra Ansariola and
Molly Megraw and
David Koslicki},
title = {IndeCut evaluates performance of network motif discovery algorithms},
journal = {Bioinform.},
volume = {34},
number = {9},
pages = {1514--1521},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx798},
doi = {10.1093/BIOINFORMATICS/BTX798},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AnsariolaMK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AntakiBS18,
author = {Danny Antaki and
William M. Brandler and
Jonathan Sebat},
title = {{SV2:} accurate structural variation genotyping and de novo mutation
detection from whole genomes},
journal = {Bioinform.},
volume = {34},
number = {10},
pages = {1774--1777},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx813},
doi = {10.1093/BIOINFORMATICS/BTX813},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AntakiBS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AntczakPZZAS18,
author = {Maciej Antczak and
Mariusz Popenda and
Tomasz Zok and
Michal Zurkowski and
Ryszard W. Adamiak and
Marta Szachniuk},
title = {New algorithms to represent complex pseudoknotted {RNA} structures
in dot-bracket notation},
journal = {Bioinform.},
volume = {34},
number = {8},
pages = {1304--1312},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx783},
doi = {10.1093/BIOINFORMATICS/BTX783},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AntczakPZZAS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AokiS18,
author = {Genta Aoki and
Yasubumi Sakakibara},
title = {Convolutional neural networks for classification of alignments of
non-coding {RNA} sequences},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i237--i244},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty228},
doi = {10.1093/BIOINFORMATICS/BTY228},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AokiS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ArefeenLXJ18,
author = {Ashraful Arefeen and
Juntao Liu and
Xinshu Xiao and
Tao Jiang},
title = {{TAPAS:} tool for alternative polyadenylation site analysis},
journal = {Bioinform.},
volume = {34},
number = {15},
pages = {2521--2529},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty110},
doi = {10.1093/BIOINFORMATICS/BTY110},
timestamp = {Fri, 24 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ArefeenLXJ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AriellyE18,
author = {Rani Arielly and
Yuval Ebenstein},
title = {Irys Extract},
journal = {Bioinform.},
volume = {34},
number = {1},
pages = {134--136},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx437},
doi = {10.1093/BIOINFORMATICS/BTX437},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AriellyE18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ArmeanLTPH18,
author = {Irina M. Armean and
Kathryn S. Lilley and
Matthew W. B. Trotter and
Nicholas Charles Victor Pilkington and
Sean B. Holden},
title = {Co-complex protein membership evaluation using Maximum Entropy on
{GO} ontology and InterPro annotation},
journal = {Bioinform.},
volume = {34},
number = {11},
pages = {1884--1892},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx803},
doi = {10.1093/BIOINFORMATICS/BTX803},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ArmeanLTPH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AsgariGMM18,
author = {Ehsaneddin Asgari and
Kiavash Garakani and
Alice C. McHardy and
Mohammad R. K. Mofrad},
title = {MicroPheno: predicting environments and host phenotypes from 16S rRNA
gene sequencing using a k-mer based representation of shallow sub-samples},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i32--i42},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty296},
doi = {10.1093/BIOINFORMATICS/BTY296},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AsgariGMM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AudanoRV18,
author = {Peter Audano and
Shashidhar Ravishankar and
Fredrik Vannberg},
title = {Mapping-free variant calling using haplotype reconstruction from k-mer
frequencies},
journal = {Bioinform.},
volume = {34},
number = {10},
pages = {1659--1665},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx753},
doi = {10.1093/BIOINFORMATICS/BTX753},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AudanoRV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AuerHIPIK18,
author = {Florian Auer and
Zaynab Hammoud and
Alexandr Ishkin and
Dexter Pratt and
Trey Ideker and
Frank Kramer},
title = {ndexr - an {R} package to interface with the network data exchange},
journal = {Bioinform.},
volume = {34},
number = {4},
pages = {716--717},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx683},
doi = {10.1093/BIOINFORMATICS/BTX683},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AuerHIPIK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AvsecBCG18,
author = {Ziga Avsec and
Mohammadamin Barekatain and
Jun Cheng and
Julien Gagneur},
title = {Modeling positional effects of regulatory sequences with spline transformations
increases prediction accuracy of deep neural networks},
journal = {Bioinform.},
volume = {34},
number = {8},
pages = {1261--1269},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx727},
doi = {10.1093/BIOINFORMATICS/BTX727},
timestamp = {Mon, 25 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AvsecBCG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AvvaruSM18,
author = {Akshay Kumar Avvaru and
Divya Tej Sowpati and
Rakesh Kumar Mishra},
title = {{PERF:} an exhaustive algorithm for ultra-fast and efficient identification
of microsatellites from large {DNA} sequences},
journal = {Bioinform.},
volume = {34},
number = {6},
pages = {943--948},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx721},
doi = {10.1093/BIOINFORMATICS/BTX721},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AvvaruSM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AyadPP18,
author = {Lorraine A. K. Ayad and
Solon P. Pissis and
Dimitris Polychronopoulos},
title = {CNEFinder: finding conserved non-coding elements in genomes},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i743--i747},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty601},
doi = {10.1093/BIOINFORMATICS/BTY601},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AyadPP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BachSBBR18,
author = {Eric Bach and
S{\'{a}}ndor Szedm{\'{a}}k and
C{\'{e}}line Brouard and
Sebastian B{\"{o}}cker and
Juho Rousu},
title = {Liquid-chromatography retention order prediction for metabolite identification},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i875--i883},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty590},
doi = {10.1093/BIOINFORMATICS/BTY590},
timestamp = {Wed, 01 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BachSBBR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaekLKY18,
author = {Junghwan Baek and
Byunghan Lee and
Sunyoung Kwon and
Sungroh Yoon},
title = {LncRNAnet: long non-coding {RNA} identification using deep learning},
journal = {Bioinform.},
volume = {34},
number = {22},
pages = {3889--3897},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty418},
doi = {10.1093/BIOINFORMATICS/BTY418},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BaekLKY18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BakirKGKS18,
author = {Mehmet Emin Bakir and
Savas Konur and
Marian Gheorghe and
Natalio Krasnogor and
Mike Stannett},
title = {Automatic selection of verification tools for efficient analysis of
biochemical models},
journal = {Bioinform.},
volume = {34},
number = {18},
pages = {3187--3195},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty282},
doi = {10.1093/BIOINFORMATICS/BTY282},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BakirKGKS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BakkerSC18,
author = {Elco Bakker and
Peter S. Swain and
Matthew M. Crane},
title = {Morphologically constrained and data informed cell segmentation of
budding yeast},
journal = {Bioinform.},
volume = {34},
number = {1},
pages = {88--96},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx550},
doi = {10.1093/BIOINFORMATICS/BTX550},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BakkerSC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BallnusSTH18,
author = {Benjamin Ballnus and
Steffen Schaper and
Fabian J. Theis and
Jan Hasenauer},
title = {Bayesian parameter estimation for biochemical reaction networks using
region-based adaptive parallel tempering},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i494--i501},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty229},
doi = {10.1093/BIOINFORMATICS/BTY229},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BallnusSTH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaniukiewiczCB18,
author = {Piotr Baniukiewicz and
Sharon Collier and
Till Bretschneider},
title = {QuimP: analyzing transmembrane signalling in highly deformable cells},
journal = {Bioinform.},
volume = {34},
number = {15},
pages = {2695--2697},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty169},
doi = {10.1093/BIOINFORMATICS/BTY169},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BaniukiewiczCB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Bansal18,
author = {Vikas Bansal},
title = {An accurate algorithm for the detection of {DNA} fragments from dilution
pool sequencing experiments},
journal = {Bioinform.},
volume = {34},
number = {1},
pages = {155--162},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx436},
doi = {10.1093/BIOINFORMATICS/BTX436},
timestamp = {Fri, 09 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Bansal18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BansalKKK18,
author = {Mukul S. Bansal and
Manolis Kellis and
Misagh Kordi and
Soumya Kundu},
title = {{RANGER-DTL} 2.0: rigorous reconstruction of gene-family evolution
by duplication, transfer and loss},
journal = {Bioinform.},
volume = {34},
number = {18},
pages = {3214--3216},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty314},
doi = {10.1093/BIOINFORMATICS/BTY314},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BansalKKK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaoSL18,
author = {Ergude Bao and
Chang{-}Jin Song and
Lingxiao Lan},
title = {ReMILO: reference assisted misassembly detection algorithm using short
and long reads},
journal = {Bioinform.},
volume = {34},
number = {1},
pages = {24--32},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx524},
doi = {10.1093/BIOINFORMATICS/BTX524},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BaoSL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BarbierBNEV18,
author = {Micha{\"{e}}l Barbier and
Astrid Bottelbergs and
Rony Nuydens and
Andreas Ebneth and
Winnok De Vos},
title = {SliceMap: an algorithm for automated brain region annotation},
journal = {Bioinform.},
volume = {34},
number = {4},
pages = {718--720},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx658},
doi = {10.1093/BIOINFORMATICS/BTX658},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BarbierBNEV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BarmanK18,
author = {Shohag Barman and
Yung{-}Keun Kwon},
title = {A Boolean network inference from time-series gene expression data
using a genetic algorithm},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i927--i933},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty584},
doi = {10.1093/BIOINFORMATICS/BTY584},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BarmanK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BasileBWFR18,
author = {Anna Okula Basile and
Marta Byrska{-}Bishop and
John R. Wallace and
Alex Thomas Frase and
Marylyn D. Ritchie},
title = {Novel features and enhancements in BioBin, a tool for the biologically
inspired binning and association analysis of rare variants},
journal = {Bioinform.},
volume = {34},
number = {3},
pages = {527--529},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx559},
doi = {10.1093/BIOINFORMATICS/BTX559},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BasileBWFR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BastkowskiMSWBM18,
author = {Sarah Bastkowski and
Daniel Mapleson and
Andreas Spillner and
Taoyang Wu and
Monika Balvociute and
Vincent Moulton},
title = {{SPECTRE:} a suite of phylogenetic tools for reticulate evolution},
journal = {Bioinform.},
volume = {34},
number = {6},
pages = {1056--1057},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx740},
doi = {10.1093/BIOINFORMATICS/BTX740},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BastkowskiMSWBM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BasuMLSC18,
author = {Amrita Basu and
Ritwik Mitra and
Han Liu and
Stuart L. Schreiber and
Paul A. Clemons},
title = {{RWEN:} response-weighted elastic net for prediction of chemosensitivity
of cancer cell lines},
journal = {Bioinform.},
volume = {34},
number = {19},
pages = {3332--3339},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty199},
doi = {10.1093/BIOINFORMATICS/BTY199},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BasuMLSC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BeccutiCAPADC18,
author = {Marco Beccuti and
Francesca Cordero and
Maddalena Arigoni and
Riccardo Panero and
Elvio Gilberto Amparore and
Susanna Donatelli and
Raffaele A. Calogero},
title = {SeqBox: RNAseq/ChIPseq reproducible analysis on a consumer game computer},
journal = {Bioinform.},
volume = {34},
number = {5},
pages = {871--872},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx674},
doi = {10.1093/BIOINFORMATICS/BTX674},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BeccutiCAPADC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BehrmannEBCKM18,
author = {Jens Behrmann and
Christian Etmann and
Tobias Boskamp and
Rita Casadonte and
J{\"{o}}rg Kriegsmann and
Peter Maa{\ss}},
title = {Deep learning for tumor classification in imaging mass spectrometry},
journal = {Bioinform.},
volume = {34},
number = {7},
pages = {1215--1223},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx724},
doi = {10.1093/BIOINFORMATICS/BTX724},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BehrmannEBCKM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Ben-BassatCO18,
author = {Ilan Ben{-}Bassat and
Benny Chor and
Yaron Orenstein},
title = {A deep neural network approach for learning intrinsic protein-RNA
binding preferences},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i638--i646},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty600},
doi = {10.1093/BIOINFORMATICS/BTY600},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Ben-BassatCO18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BenelliRD18,
author = {Matteo Benelli and
Dario Romagnoli and
Francesca Demichelis},
title = {Tumor purity quantification by clonal {DNA} methylation signatures},
journal = {Bioinform.},
volume = {34},
number = {10},
pages = {1642--1649},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty011},
doi = {10.1093/BIOINFORMATICS/BTY011},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BenelliRD18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Bengtsson-Palme18,
author = {Johan Bengtsson{-}Palme and
Rodney T. Richardson and
Marco Meola and
Christian Wurzbacher and
{\'{E}}milie D. Tremblay and
Kaisa Thorell and
K{\"{a}}rt Kanger and
K. Martin Eriksson and
Guillaume J. Bilodeau and
Reed M. Johnson and
Martin Hartmann and
R. Henrik Nilsson},
title = {Metaxa2 Database Builder: enabling taxonomic identification from metagenomic
or metabarcoding data using any genetic marker},
journal = {Bioinform.},
volume = {34},
number = {23},
pages = {4027--4033},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty482},
doi = {10.1093/BIOINFORMATICS/BTY482},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Bengtsson-Palme18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BernhemB18,
author = {Kristoffer Bernhem and
Hjalmar Brismar},
title = {SMLocalizer, a {GPU} accelerated ImageJ plugin for single molecule
localization microscopy},
journal = {Bioinform.},
volume = {34},
number = {1},
pages = {137--138},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx553},
doi = {10.1093/BIOINFORMATICS/BTX553},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BernhemB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BerselliLT18,
author = {Michele Berselli and
Enrico Lavezzo and
Stefano Toppo},
title = {NeSSie: a tool for the identification of approximate {DNA} sequence
symmetries},
journal = {Bioinform.},
volume = {34},
number = {14},
pages = {2503--2505},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty142},
doi = {10.1093/BIOINFORMATICS/BTY142},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BerselliLT18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BertelliB18,
author = {Claire Bertelli and
Fiona S. L. Brinkman},
title = {Improved genomic island predictions with IslandPath-DIMOB},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {2161--2167},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty095},
doi = {10.1093/BIOINFORMATICS/BTY095},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BertelliB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BhadraBCR18,
author = {Sahely Bhadra and
Peter Blomberg and
Sandra Castillo and
Juho Rousu},
title = {Principal metabolic flux mode analysis},
journal = {Bioinform.},
volume = {34},
number = {14},
pages = {2409--2417},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty049},
doi = {10.1093/BIOINFORMATICS/BTY049},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BhadraBCR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BhowmickMB18,
author = {Pallab Bhowmick and
Yassene Mohammed and
Christoph H. Borchers},
title = {MRMAssayDB: an integrated resource for validated targeted proteomics
assays},
journal = {Bioinform.},
volume = {34},
number = {20},
pages = {3566--3571},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty385},
doi = {10.1093/BIOINFORMATICS/BTY385},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BhowmickMB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BiczokBEERSTWHS18,
author = {Rudolf Biczok and
Peter Bozsoky and
Peter Eisenmann and
Johannes Ernst and
Tobias Ribizel and
Fedor Scholz and
Axel Trefzer and
Florian Weber and
Michael Hamann and
Alexandros Stamatakis},
title = {Two {C++} libraries for counting trees on a phylogenetic terrace},
journal = {Bioinform.},
volume = {34},
number = {19},
pages = {3399--3401},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty384},
doi = {10.1093/BIOINFORMATICS/BTY384},
timestamp = {Mon, 20 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BiczokBEERSTWHS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BiffiMADWBSFMBC18,
author = {Carlo Biffi and
Antonio de Marvao and
Mark I Attard and
Timothy J. W. Dawes and
Nicola Whiffin and
Wenjia Bai and
Wenzhe Shi and
Catherine Francis and
Hannah Meyer and
Rachel J. Buchan and
Stuart A. Cook and
Daniel Rueckert and
Declan P. O'Regan},
title = {Three-dimensional cardiovascular imaging-genetics: a mass univariate
framework},
journal = {Bioinform.},
volume = {34},
number = {1},
pages = {97--103},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx552},
doi = {10.1093/BIOINFORMATICS/BTX552},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BiffiMADWBSFMBC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BinevPPRCLA18,
author = {Yuri Binev and
Daniela Peixoto and
Florbela Pereira and
Ian Rodrigues and
Sofia Cavaco and
Ana M. Lobo and
Jo{\~{a}}o Aires{-}de{-}Sousa},
title = {NavMol 3.0: enabling the representation of metabolic reactions by
blind users},
journal = {Bioinform.},
volume = {34},
number = {1},
pages = {120--121},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx556},
doi = {10.1093/BIOINFORMATICS/BTX556},
timestamp = {Fri, 22 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BinevPPRCLA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BirminghamMMXF18,
author = {Amanda Birmingham and
Adam M. Mark and
Carlo Mazzaferro and
Guorong Xu and
Kathleen M. Fisch},
title = {Efficient population-scale variant analysis and prioritization with
VAPr},
journal = {Bioinform.},
volume = {34},
number = {16},
pages = {2843--2845},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty192},
doi = {10.1093/BIOINFORMATICS/BTY192},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BirminghamMMXF18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BlischakKW18,
author = {Paul D. Blischak and
Laura Salter Kubatko and
Andrea D. Wolfe},
title = {{SNP} genotyping and parameter estimation in polyploids using low-coverage
sequencing data},
journal = {Bioinform.},
volume = {34},
number = {3},
pages = {407--415},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx587},
doi = {10.1093/BIOINFORMATICS/BTX587},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BlischakKW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BobayEO18,
author = {Louis{-}Marie Bobay and
Brian Shin{-}Hua Ellis and
Howard Ochman},
title = {ConSpeciFix: classifying prokaryotic species based on gene flow},
journal = {Bioinform.},
volume = {34},
number = {21},
pages = {3738--3740},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty400},
doi = {10.1093/BIOINFORMATICS/BTY400},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BobayEO18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BockGMRRB18,
author = {Christian Bock and
Thomas Gumbsch and
Michael Moor and
Bastian Rieck and
Damian Roqueiro and
Karsten M. Borgwardt},
title = {Association mapping in biomedical time series via statistically significant
shapelet mining},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i438--i446},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty246},
doi = {10.1093/BIOINFORMATICS/BTY246},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BockGMRRB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BolocRGABLM18,
author = {Daniel Boloc and
Natalia Rodr{\'{\i}}guez and
Patricia Gass{\'{o}} and
Josep F. Abril and
Miquel Bernardo and
Amalia Lafuente and
Sergi Mas},
title = {SiNoPsis: Single Nucleotide Polymorphisms selection and promoter profiling},
journal = {Bioinform.},
volume = {34},
number = {2},
pages = {303--305},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx570},
doi = {10.1093/BIOINFORMATICS/BTX570},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BolocRGABLM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BondarevBZK18,
author = {Stanislav A. Bondarev and
Olga V. Bondareva and
Galina A. Zhouravleva and
Andrey V. Kajava},
title = {BetaSerpentine: a bioinformatics tool for reconstruction of amyloid
structures},
journal = {Bioinform.},
volume = {34},
number = {4},
pages = {599--608},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx629},
doi = {10.1093/BIOINFORMATICS/BTX629},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BondarevBZK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BoomMSD18,
author = {Willem van den Boom and
Callie Mao and
Rebecca A. Schroeder and
David B. Dunson},
title = {Extrema-weighted feature extraction for functional data},
journal = {Bioinform.},
volume = {34},
number = {14},
pages = {2457--2464},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty120},
doi = {10.1093/BIOINFORMATICS/BTY120},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BoomMSD18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BordinD18,
author = {Nicola Bordin and
Damien P. Devos},
title = {ICBdocker: a Docker image for proteome annotation and visualization},
journal = {Bioinform.},
volume = {34},
number = {22},
pages = {3937--3938},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty493},
doi = {10.1093/BIOINFORMATICS/BTY493},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BordinD18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BorrelKF18,
author = {Alexandre Borrel and
Nicole C. Kleinstreuer and
Denis Fourches},
title = {Exploring drug space with ChemMaps.com},
journal = {Bioinform.},
volume = {34},
number = {21},
pages = {3773--3775},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty412},
doi = {10.1093/BIOINFORMATICS/BTY412},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BorrelKF18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BosdrieszPKSBBB18,
author = {Evert Bosdriesz and
Anirudh Prahallad and
Bertram Klinger and
Anja Sieber and
Astrid Bosma and
Ren{\'{e}} Bernards and
Nils Bl{\"{u}}thgen and
Lodewyk F. A. Wessels},
title = {Comparative Network Reconstruction using mixed integer programming},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i997--i1004},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty616},
doi = {10.1093/BIOINFORMATICS/BTY616},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BosdrieszPKSBBB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BourkeGVJKSVASM18,
author = {Peter M. Bourke and
Geert van Geest and
Roeland E. Voorrips and
Johannes Jansen and
Twan Kranenburg and
Arwa Shahin and
Richard G. F. Visser and
Paul Arens and
Marinus J. M. Smulders and
Chris Maliepaard},
title = {polymapR - linkage analysis and genetic map construction from {F1}
populations of outcrossing polyploids},
journal = {Bioinform.},
volume = {34},
number = {20},
pages = {3496--3502},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty371},
doi = {10.1093/BIOINFORMATICS/BTY371},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BourkeGVJKSVASM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BoutillierMLMKF18,
author = {Pierre Boutillier and
Mutaamba Maasha and
Xing Li and
H{\'{e}}ctor F. Medina{-}Abarca and
Jean Krivine and
J{\'{e}}r{\^{o}}me Feret and
Ioana Cristescu and
Angus G. Forbes and
Walter Fontana},
title = {The Kappa platform for rule-based modeling},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i583--i592},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty272},
doi = {10.1093/BIOINFORMATICS/BTY272},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BoutillierMLMKF18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Braun18,
author = {Edward L. Braun},
title = {An evolutionary model motivated by physicochemical properties of amino
acids reveals variation among proteins},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i350--i356},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty261},
doi = {10.1093/BIOINFORMATICS/BTY261},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Braun18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BretschneiderGD18,
author = {Hannes Bretschneider and
Shreshth Gandhi and
Amit G. Deshwar and
Khalid Zuberi and
Brendan J. Frey},
title = {{COSSMO:} predicting competitive alternative splice site selection
using deep learning},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i429--i437},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty244},
doi = {10.1093/BIOINFORMATICS/BTY244},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BretschneiderGD18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrinkMB18,
author = {Benedikt G. Brink and
Justin Meskas and
Ryan Remy Brinkman},
title = {ddPCRclust: an {R} package and Shiny app for automated analysis of
multiplexed ddPCR data},
journal = {Bioinform.},
volume = {34},
number = {15},
pages = {2687--2689},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty136},
doi = {10.1093/BIOINFORMATICS/BTY136},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BrinkMB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrombergR18,
author = {Yana Bromberg and
Predrag Radivojac},
title = {{ISMB} 2018 proceedings},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i2--i3},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty413},
doi = {10.1093/BIOINFORMATICS/BTY413},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BrombergR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrouwerHKBEKSI18,
author = {R. W. W. Brouwer and
M. C. G. N. van den Hout and
C. E. M. Kockx and
Erwin Brosens and
B. Eussen and
A. de Klein and
F. Sleutels and
Wilfred F. J. van IJcken},
title = {Nimbus: a design-driven analyses suite for amplicon-based {NGS} data},
journal = {Bioinform.},
volume = {34},
number = {16},
pages = {2732--2739},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty145},
doi = {10.1093/BIOINFORMATICS/BTY145},
timestamp = {Mon, 06 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BrouwerHKBEKSI18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrysbaertLVL18,
author = {Guillaume Brysbaert and
Kevin Lorgouilloux and
Wim F. Vranken and
Marc F. Lensink},
title = {RINspector: a Cytoscape app for centrality analyses and DynaMine flexibility
prediction},
journal = {Bioinform.},
volume = {34},
number = {2},
pages = {294--296},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx586},
doi = {10.1093/BIOINFORMATICS/BTX586},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BrysbaertLVL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BudachM18,
author = {Stefan Budach and
Annalisa Marsico},
title = {pysster: classification of biological sequences by learning sequence
and structure motifs with convolutional neural networks},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {3035--3037},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty222},
doi = {10.1093/BIOINFORMATICS/BTY222},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BudachM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BullockTT18,
author = {Joshua M. A Bullock and
Konstantinos Thalassinos and
Maya Topf},
title = {Jwalk and {MNXL} web server: model validation using restraints from
crosslinking mass spectrometry},
journal = {Bioinform.},
volume = {34},
number = {20},
pages = {3584--3585},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty366},
doi = {10.1093/BIOINFORMATICS/BTY366},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BullockTT18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ButkiewiczBLJMR18,
author = {Mariusz Butkiewicz and
Elizabeth E. Blue and
Yuk Yee Leung and
Xueqiu Jian and
Edoardo Marcora and
Alan E. Renton and
Amanda Kuzma and
Li{-}San Wang and
Daniel C. Koboldt and
Jonathan L. Haines and
William S. Bush},
title = {Functional annotation of genomic variants in studies of late-onset
Alzheimer's disease},
journal = {Bioinform.},
volume = {34},
number = {16},
pages = {2724--2731},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty177},
doi = {10.1093/BIOINFORMATICS/BTY177},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ButkiewiczBLJMR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CalderoneC18,
author = {Alberto Calderone and
Gianni Cesareni},
title = {{SPV:} a JavaScript Signaling Pathway Visualizer},
journal = {Bioinform.},
volume = {34},
number = {15},
pages = {2684--2686},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty188},
doi = {10.1093/BIOINFORMATICS/BTY188},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CalderoneC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CaoGZC18,
author = {Minh Duc Cao and
Devika Ganesamoorthy and
Chenxi Zhou and
Lachlan J. M. Coin},
title = {Simulating the dynamics of targeted capture sequencing with CapSim},
journal = {Bioinform.},
volume = {34},
number = {5},
pages = {873--874},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx691},
doi = {10.1093/BIOINFORMATICS/BTX691},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CaoGZC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CaoPYHS18,
author = {Zhen Cao and
Xiaoyong Pan and
Yang Yang and
Yan Huang and
Hong{-}Bin Shen},
title = {The lncLocator: a subcellular localization predictor for long non-coding
RNAs based on a stacked ensemble classifier},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {2185--2194},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty085},
doi = {10.1093/BIOINFORMATICS/BTY085},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CaoPYHS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CarbonellWSTTSK18,
author = {Pablo Carbonell and
Jerry Wong and
Neil Swainston and
Eriko Takano and
Nicholas J. Turner and
Nigel S. Scrutton and
Douglas B. Kell and
Rainer Breitling and
Jean{-}Loup Faulon},
title = {Selenzyme: enzyme selection tool for pathway design},
journal = {Bioinform.},
volume = {34},
number = {12},
pages = {2153--2154},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty065},
doi = {10.1093/BIOINFORMATICS/BTY065},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CarbonellWSTTSK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CardosoZJSNH18,
author = {Jo{\~{a}}o G. R. Cardoso and
Ahmad A. Zeidan and
Kristian Jensen and
Nikolaus Sonnenschein and
Ana Rute Neves and
Markus J. Herrg{\aa}rd},
title = {{MARSI:} metabolite analogues for rational strain improvement},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {2319--2321},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty108},
doi = {10.1093/BIOINFORMATICS/BTY108},
timestamp = {Sat, 25 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CardosoZJSNH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CarioW18,
author = {Clinton L. Cario and
John S. Witte},
title = {Orchid: a novel management, annotation and machine learning framework
for analyzing cancer mutations},
journal = {Bioinform.},
volume = {34},
number = {6},
pages = {936--942},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx709},
doi = {10.1093/BIOINFORMATICS/BTX709},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CarioW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Carvajal-Rodriguez18,
author = {Antonio Carvajal{-}Rodr{\'{\i}}guez},
title = {Myriads: P-value-based multiple testing correction},
journal = {Bioinform.},
volume = {34},
number = {6},
pages = {1043--1045},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx746},
doi = {10.1093/BIOINFORMATICS/BTX746},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Carvajal-Rodriguez18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CarverCVLHTWEA18,
author = {Tim Carver and
Alex P. Cunningham and
Chantal Babb de Villiers and
Andrew Lee and
Simon Hartley and
Marc Tischkowitz and
Fiona M. Walter and
Douglas F. Easton and
Antonis C. Antoniou},
title = {pedigreejs: a web-based graphical pedigree editor},
journal = {Bioinform.},
volume = {34},
number = {6},
pages = {1069--1071},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx705},
doi = {10.1093/BIOINFORMATICS/BTX705},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CarverCVLHTWEA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Castillo-LaraA18,
author = {Sergio Castillo{-}Lara and
Josep F. Abril},
title = {PlanNET: homology-based predicted interactome for multiple planarian
transcriptomes},
journal = {Bioinform.},
volume = {34},
number = {6},
pages = {1016--1023},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx738},
doi = {10.1093/BIOINFORMATICS/BTX738},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Castillo-LaraA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CechovaLBB18,
author = {Jana Cechov{\'{a}} and
Jir{\'{\i}} L{\'{y}}sek and
Martin Bartas and
V{\'{a}}clav Br{\'{a}}zda},
title = {Complex analyses of inverted repeats in mitochondrial genomes revealed
their importance and variability},
journal = {Bioinform.},
volume = {34},
number = {7},
pages = {1081--1085},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx729},
doi = {10.1093/BIOINFORMATICS/BTX729},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CechovaLBB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CedozPBG18,
author = {Pierre{-}Louis Cedoz and
Marcos Prunello and
Kevin Brennan and
Olivier Gevaert},
title = {MethylMix 2.0: an {R} package for identifying {DNA} methylation genes},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {3044--3046},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty156},
doi = {10.1093/BIOINFORMATICS/BTY156},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CedozPBG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CensoniM18,
author = {Luciano Censoni and
Leandro Mart{\'{\i}}nez},
title = {Prediction of kinetics of protein folding with non-redundant contact
information},
journal = {Bioinform.},
volume = {34},
number = {23},
pages = {4034--4038},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty478},
doi = {10.1093/BIOINFORMATICS/BTY478},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CensoniM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CevostVM18,
author = {Jasmin Cevost and
C{\'{e}}dric Vaillant and
Sam Meyer},
title = {ThreaDNA: predicting {DNA} mechanics' contribution to sequence selectivity
of proteins along whole genomes},
journal = {Bioinform.},
volume = {34},
number = {4},
pages = {609--616},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx634},
doi = {10.1093/BIOINFORMATICS/BTX634},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CevostVM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChafinDD18,
author = {Tyler K. Chafin and
Marlis R. Douglas and
Michael E. Douglas},
title = {MrBait: universal identification and design of targeted-enrichment
capture probes},
journal = {Bioinform.},
volume = {34},
number = {24},
pages = {4293--4296},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty548},
doi = {10.1093/BIOINFORMATICS/BTY548},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChafinDD18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChakrabortyA18,
author = {Abhijit Chakraborty and
Ferhat Ay},
title = {Identification of copy number variations and translocations in cancer
cells from Hi-C data},
journal = {Bioinform.},
volume = {34},
number = {2},
pages = {338--345},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx664},
doi = {10.1093/BIOINFORMATICS/BTX664},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChakrabortyA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChanLRBNH18,
author = {Rachel C. W. Chan and
Maxwell W. Libbrecht and
Eric G. Roberts and
Jeffrey A. Bilmes and
William Stafford Noble and
Michael M. Hoffman},
title = {Segway 2.0: Gaussian mixture models and minibatch training},
journal = {Bioinform.},
volume = {34},
number = {4},
pages = {669--671},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx603},
doi = {10.1093/BIOINFORMATICS/BTX603},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChanLRBNH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChanWDM18,
author = {Siu Hung Joshua Chan and
Lin Wang and
Satyakam Dash and
Costas D. Maranas},
title = {Accelerating flux balance calculations in genome-scale metabolic models
by localizing the application of loopless constraints},
journal = {Bioinform.},
volume = {34},
number = {24},
pages = {4248--4255},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty446},
doi = {10.1093/BIOINFORMATICS/BTY446},
timestamp = {Thu, 22 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChanWDM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChandakTW18,
author = {Shubham Chandak and
Kedar Tatwawadi and
Tsachy Weissman},
title = {Compression of genomic sequencing reads via hash-based reordering:
algorithm and analysis},
journal = {Bioinform.},
volume = {34},
number = {4},
pages = {558--567},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx639},
doi = {10.1093/BIOINFORMATICS/BTX639},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChandakTW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChangXGWYZHZ18,
author = {Cheng Chang and
Kaikun Xu and
Chaoping Guo and
Jinxia Wang and
Qi Yan and
Jian Zhang and
Fuchu He and
Yunping Zhu},
title = {PANDA-view: an easy-to-use tool for statistical analysis and visualization
of quantitative proteomics data},
journal = {Bioinform.},
volume = {34},
number = {20},
pages = {3594--3596},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty408},
doi = {10.1093/BIOINFORMATICS/BTY408},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChangXGWYZHZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChatzinakosLWVK18,
author = {Chris Chatzinakos and
Donghyung Lee and
Bradley Todd Webb and
Vladimir I. Vladimirov and
Kenneth S. Kendler and
Silviu{-}Alin Bacanu},
title = {{JEPEGMIX2:} improved gene-level joint analysis of eQTLs in cosmopolitan
cohorts},
journal = {Bioinform.},
volume = {34},
number = {2},
pages = {286--288},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx509},
doi = {10.1093/BIOINFORMATICS/BTX509},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChatzinakosLWVK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChazalvielFPVMG18,
author = {Maxime Chazalviel and
Cl{\'{e}}ment Frainay and
Nathalie Poupin and
Florence Vinson and
Benjamin Merlet and
Yoann Gloaguen and
Ludovic Cottret and
Fabien Jourdan},
title = {MetExploreViz: web component for interactive metabolic network visualization},
journal = {Bioinform.},
volume = {34},
number = {2},
pages = {312--313},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx588},
doi = {10.1093/BIOINFORMATICS/BTX588},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChazalvielFPVMG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenCLWWS18,
author = {Guodong Chen and
Man Cao and
Kun Luo and
Lina Wang and
Pingping Wen and
Shaoping Shi},
title = {ProAcePred: prokaryote lysine acetylation sites prediction based on
elastic net feature optimization},
journal = {Bioinform.},
volume = {34},
number = {23},
pages = {3999--4006},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty444},
doi = {10.1093/BIOINFORMATICS/BTY444},
timestamp = {Tue, 22 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenCLWWS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenGWJWHCX18,
author = {Xi Chen and
Jinghua Gu and
Xiao Wang and
Jin{-}Gyoung Jung and
Tian{-}Li Wang and
Leena Hilakivi{-}Clarke and
Robert Clarke and
Jianhua Xuan},
title = {{CRNET:} an efficient sampling approach to infer functional regulatory
networks by integrating large-scale ChIP-seq and time-course RNA-seq
data},
journal = {Bioinform.},
volume = {34},
number = {10},
pages = {1733--1740},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx827},
doi = {10.1093/BIOINFORMATICS/BTX827},
timestamp = {Thu, 19 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenGWJWHCX18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenHYYW18,
author = {Xing Chen and
Yu{-}An Huang and
Zhu{-}Hong You and
Guiying Yan and
Xuesong Wang},
title = {A novel approach based on {KATZ} measure to predict associations of
human microbiota with non-infectious diseases},
journal = {Bioinform.},
volume = {34},
number = {8},
pages = {1440},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx773},
doi = {10.1093/BIOINFORMATICS/BTX773},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenHYYW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenJRCHL18,
author = {Ping Chen and
Xinyun Jing and
Jian Ren and
Han Cao and
Pei Hao and
Xuan Li},
title = {Modelling BioNano optical data and simulation study of genome map
assembly},
journal = {Bioinform.},
volume = {34},
number = {23},
pages = {3966--3974},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty456},
doi = {10.1093/BIOINFORMATICS/BTY456},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenJRCHL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenKDWYGB18,
author = {Jun Chen and
Emily King and
Rebecca Deek and
Zhi Wei and
Yue Yu and
Diane E. Grill and
Karla V. Ballman},
title = {An omnibus test for differential distribution analysis of microbiome
sequencing data},
journal = {Bioinform.},
volume = {34},
number = {4},
pages = {643--651},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx650},
doi = {10.1093/BIOINFORMATICS/BTX650},
timestamp = {Thu, 28 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenKDWYGB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenLHSSCL18,
author = {Kun{-}Tze Chen and
Chia{-}Liang Liu and
Shang{-}Hao Huang and
Hsin{-}Ting Shen and
Yi{-}Kung Shieh and
Hsien{-}Tai Chiu and
Chin Lung Lu},
title = {{CSAR:} a contig scaffolding tool using algebraic rearrangements},
journal = {Bioinform.},
volume = {34},
number = {1},
pages = {109--111},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx543},
doi = {10.1093/BIOINFORMATICS/BTX543},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenLHSSCL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenWQGL18,
author = {Xing Chen and
Lei Wang and
Jia Qu and
Na{-}Na Guan and
Jian{-}Qiang Li},
title = {Predicting miRNA-disease association based on inductive matrix completion},
journal = {Bioinform.},
volume = {34},
number = {24},
pages = {4256--4265},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty503},
doi = {10.1093/BIOINFORMATICS/BTY503},
timestamp = {Mon, 18 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenWQGL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenXWZYL18,
author = {Xing Chen and
Di Xie and
Lei Wang and
Qi Zhao and
Zhu{-}Hong You and
Hongsheng Liu},
title = {{BNPMDA:} Bipartite Network Projection for MiRNA-Disease Association
prediction},
journal = {Bioinform.},
volume = {34},
number = {18},
pages = {3178--3186},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty333},
doi = {10.1093/BIOINFORMATICS/BTY333},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenXWZYL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenXXJMLBL18,
author = {Chen{-}Hao Chen and
Tengfei Xiao and
Han Xu and
Peng Jiang and
Clifford A. Meyer and
Wei Li and
Myles Brown and
Xiaole Shirley Liu},
title = {Improved design and analysis of {CRISPR} knockout screens},
journal = {Bioinform.},
volume = {34},
number = {23},
pages = {4095--4101},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty450},
doi = {10.1093/BIOINFORMATICS/BTY450},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenXXJMLBL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenZ18,
author = {Chunpeng James Chen and
Zhiwu Zhang},
title = {iPat: intelligent prediction and association tool for genomic research},
journal = {Bioinform.},
volume = {34},
number = {11},
pages = {1925--1927},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty015},
doi = {10.1093/BIOINFORMATICS/BTY015},
timestamp = {Wed, 18 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenZCG18,
author = {Shifu Chen and
Yanqing Zhou and
Yaru Chen and
Jia Gu},
title = {fastp: an ultra-fast all-in-one {FASTQ} preprocessor},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i884--i890},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty560},
doi = {10.1093/BIOINFORMATICS/BTY560},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenZCG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenZLLMWWSDCS18,
author = {Zhen Chen and
Pei Zhao and
Fuyi Li and
Andr{\'{e}} Leier and
Tatiana T. Marquez{-}Lago and
Yanan Wang and
Geoffrey I. Webb and
Alexander Ian Smith and
Roger J. Daly and
Kuo{-}Chen Chou and
Jiangning Song},
title = {iFeature: a Python package and web server for features extraction
and selection from protein and peptide sequences},
journal = {Bioinform.},
volume = {34},
number = {14},
pages = {2499--2502},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty140},
doi = {10.1093/BIOINFORMATICS/BTY140},
timestamp = {Mon, 17 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenZLLMWWSDCS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenZS18,
author = {Jiao Chen and
Yingchao Zhao and
Yanni Sun},
title = {De novo haplotype reconstruction in viral quasispecies using paired-end
read guided path finding},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {2927--2935},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty202},
doi = {10.1093/BIOINFORMATICS/BTY202},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenZS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChengHSZJ18,
author = {Liang Cheng and
Yang Hu and
Jie Sun and
Meng Zhou and
Qinghua Jiang},
title = {DincRNA: a comprehensive web-based bioinformatics toolkit for exploring
disease associations and ncRNA function},
journal = {Bioinform.},
volume = {34},
number = {11},
pages = {1953--1956},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty002},
doi = {10.1093/BIOINFORMATICS/BTY002},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChengHSZJ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChengL18,
author = {Lixin Cheng and
Kwong{-}Sak Leung},
title = {Identification and characterization of moonlighting long non-coding
RNAs based on {RNA} and protein interactome},
journal = {Bioinform.},
volume = {34},
number = {20},
pages = {3519--3528},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty399},
doi = {10.1093/BIOINFORMATICS/BTY399},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChengL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChengMWPFH18,
author = {Jun Cheng and
Xiaokui Mo and
Xusheng Wang and
Anil Parwani and
Qianjin Feng and
Kun Huang},
title = {Identification of topological features in renal tumor microenvironment
associated with patient survival},
journal = {Bioinform.},
volume = {34},
number = {6},
pages = {1024--1030},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx723},
doi = {10.1093/BIOINFORMATICS/BTX723},
timestamp = {Tue, 02 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChengMWPFH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChengWX18,
author = {Haoyu Cheng and
Ming Wu and
Yun Xu},
title = {FMtree: a fast locating algorithm of FM-indexes for genomic data},
journal = {Bioinform.},
volume = {34},
number = {3},
pages = {416--424},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx596},
doi = {10.1093/BIOINFORMATICS/BTX596},
timestamp = {Mon, 14 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChengWX18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChengXC18,
author = {Xiang Cheng and
Xuan Xiao and
Kuo{-}Chen Chou},
title = {pLoc-mHum: predict subcellular localization of multi-location human
proteins via general PseAAC to winnow out the crucial {GO} information},
journal = {Bioinform.},
volume = {34},
number = {9},
pages = {1448--1456},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx711},
doi = {10.1093/BIOINFORMATICS/BTX711},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChengXC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChernyshovT18,
author = {Ivan Yu Chernyshov and
Philip V. Toukach},
title = {REStLESS: automated translation of glycan sequences from residue-based
notation to {SMILES} and atomic coordinates},
journal = {Bioinform.},
volume = {34},
number = {15},
pages = {2679--2681},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty168},
doi = {10.1093/BIOINFORMATICS/BTY168},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChernyshovT18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChiesaCP18,
author = {Mattia Chiesa and
Gualtiero I. Colombo and
Luca Piacentini},
title = {DaMiRseq - an R/Bioconductor package for data mining of RNA-Seq data:
normalization, feature selection and classification},
journal = {Bioinform.},
volume = {34},
number = {8},
pages = {1416--1418},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx795},
doi = {10.1093/BIOINFORMATICS/BTX795},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChiesaCP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChoiCBMRDD18,
author = {Leena Choi and
Robert J. Carroll and
Cole Beck and
Jonathan D. Mosley and
Dan M. Roden and
Joshua C. Denny and
Sara L. Van Driest},
title = {Evaluating statistical approaches to leverage large clinical datasets
for uncovering therapeutic and adverse medication effects},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {2988--2996},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty306},
doi = {10.1093/BIOINFORMATICS/BTY306},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChoiCBMRDD18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChoiFAGB18,
author = {Yoonjoo Choi and
Jacob M. Furlon and
Ryan B. Amos and
Karl E. Griswold and
Chris Bailey{-}Kellogg},
title = {DisruPPI: structure-based computational redesign algorithm for protein
binding disruption},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i245--i253},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty274},
doi = {10.1093/BIOINFORMATICS/BTY274},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChoiFAGB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChongX18,
author = {Jasmine Chong and
Jianguo Xia},
title = {MetaboAnalystR: an {R} package for flexible and reproducible analysis
of metabolomics data},
journal = {Bioinform.},
volume = {34},
number = {24},
pages = {4313--4314},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty528},
doi = {10.1093/BIOINFORMATICS/BTY528},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChongX18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChristensenHR18,
author = {Carl D. Christensen and
Jan{-}Hendrik S. Hofmeyr and
Johann M. Rohwer},
title = {PySCeSToolbox: a collection of metabolic pathway analysis tools},
journal = {Bioinform.},
volume = {34},
number = {1},
pages = {124--125},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx567},
doi = {10.1093/BIOINFORMATICS/BTX567},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChristensenHR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChuaBZ18,
author = {Huey{-}Eng Chua and
Sourav S. Bhowmick and
Jie Zheng},
title = {{TROVE:} a user-friendly tool for visualizing and analyzing cancer
hallmarks in signaling networks},
journal = {Bioinform.},
volume = {34},
number = {2},
pages = {314--316},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx600},
doi = {10.1093/BIOINFORMATICS/BTX600},
timestamp = {Thu, 02 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChuaBZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CichonskaPSJAHA18,
author = {Anna Cichonska and
Tapio Pahikkala and
S{\'{a}}ndor Szedm{\'{a}}k and
Heli Julkunen and
Antti Airola and
Markus Heinonen and
Tero Aittokallio and
Juho Rousu},
title = {Learning with multiple pairwise kernels for drug bioactivity prediction},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i509--i518},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty277},
doi = {10.1093/BIOINFORMATICS/BTY277},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CichonskaPSJAHA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CickovskiN18,
author = {Trevor Cickovski and
Giri Narasimhan},
title = {Constructing lightweight and flexible pipelines using Plugin-Based
Microbiome Analysis (PluMA)},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {2881--2888},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty198},
doi = {10.1093/BIOINFORMATICS/BTY198},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CickovskiN18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CislakGH18,
author = {Aleksander Cislak and
Szymon Grabowski and
Jan Holub},
title = {SOPanG: online text searching over a pan-genome},
journal = {Bioinform.},
volume = {34},
number = {24},
pages = {4290--4292},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty506},
doi = {10.1093/BIOINFORMATICS/BTY506},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CislakGH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ClarkeBSF18,
author = {Thomas H. Clarke and
Lauren M. Brinkac and
Granger G. Sutton and
Derrick E. Fouts},
title = {GGRaSP: a R-package for selecting representative genomes using Gaussian
mixture models},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {3032--3034},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty300},
doi = {10.1093/BIOINFORMATICS/BTY300},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ClarkeBSF18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ClassHBD18,
author = {Caleb A. Class and
Min Jin Ha and
Veerabhadran Baladandayuthapani and
Kim{-}Anh Do},
title = {iDINGO - integrative differential network analysis in genomics with
Shiny application},
journal = {Bioinform.},
volume = {34},
number = {7},
pages = {1243--1245},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx750},
doi = {10.1093/BIOINFORMATICS/BTX750},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ClassHBD18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ClearyF18,
author = {Alan M. Cleary and
Andrew D. Farmer},
title = {Genome Context Viewer: visual exploration of multiple annotated genomes
using microsynteny},
journal = {Bioinform.},
volume = {34},
number = {9},
pages = {1562--1564},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx757},
doi = {10.1093/BIOINFORMATICS/BTX757},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ClearyF18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ClementFBP18,
author = {Kendell Clement and
Rick Farouni and
Daniel E. Bauer and
Luca Pinello},
title = {AmpUMI: design and analysis of unique molecular identifiers for deep
amplicon sequencing},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i202--i210},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty264},
doi = {10.1093/BIOINFORMATICS/BTY264},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ClementFBP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CobosVMP18,
author = {Francisco Avila Cobos and
Jo Vandesompele and
Pieter Mestdagh and
Katleen De Preter},
title = {Computational deconvolution of transcriptomics data from mixed cell
populations},
journal = {Bioinform.},
volume = {34},
number = {11},
pages = {1969--1979},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty019},
doi = {10.1093/BIOINFORMATICS/BTY019},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CobosVMP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CoelhoS18,
author = {Vitor L. Coelho and
Michael Sammeth},
title = {An automated method for detecting alternatively spliced protein domains},
journal = {Bioinform.},
volume = {34},
number = {22},
pages = {3809--3816},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty425},
doi = {10.1093/BIOINFORMATICS/BTY425},
timestamp = {Tue, 26 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CoelhoS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CokelaerCIMLSG18,
author = {Thomas Cokelaer and
Elisabeth Chen and
Francesco Iorio and
Michael P. Menden and
Howard Lightfoot and
Julio Saez{-}Rodriguez and
Mathew Garnett},
title = {GDSCTools for mining pharmacogenomic interactions in cancer},
journal = {Bioinform.},
volume = {34},
number = {7},
pages = {1226--1228},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx744},
doi = {10.1093/BIOINFORMATICS/BTX744},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CokelaerCIMLSG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CollinsW18,
author = {Kodi Collins and
Tandy J. Warnow},
title = {{PASTA} for proteins},
journal = {Bioinform.},
volume = {34},
number = {22},
pages = {3939--3941},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty495},
doi = {10.1093/BIOINFORMATICS/BTY495},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CollinsW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CorettoST18,
author = {Pietro Coretto and
Angela Serra and
Roberto Tagliaferri},
title = {Robust clustering of noisy high-dimensional gene expression data for
patients subtyping},
journal = {Bioinform.},
volume = {34},
number = {23},
pages = {4064--4072},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty502},
doi = {10.1093/BIOINFORMATICS/BTY502},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CorettoST18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CornishDS18,
author = {Alex J. Cornish and
Alessia David and
Michael J. E. Sternberg},
title = {PhenoRank: reducing study bias in gene prioritization through simulation},
journal = {Bioinform.},
volume = {34},
number = {12},
pages = {2087--2095},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty028},
doi = {10.1093/BIOINFORMATICS/BTY028},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CornishDS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CosterDSCB18,
author = {Wouter De Coster and
Svenn D'Hert and
Darrin T. Schultz and
Marc Cruts and
Christine Van Broeckhoven},
title = {NanoPack: visualizing and processing long-read sequencing data},
journal = {Bioinform.},
volume = {34},
number = {15},
pages = {2666--2669},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty149},
doi = {10.1093/BIOINFORMATICS/BTY149},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CosterDSCB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CrawfordKBCG18,
author = {Victoria G. Crawford and
Alan Kuhnle and
Christina Boucher and
Rayan Chikhi and
Travis Gagie},
title = {Practical dynamic de Bruijn graphs},
journal = {Bioinform.},
volume = {34},
number = {24},
pages = {4189--4195},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty500},
doi = {10.1093/BIOINFORMATICS/BTY500},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CrawfordKBCG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CremonaPCMCV18,
author = {Marzia A. Cremona and
Alessia Pini and
Fabio Cumbo and
Kateryna D. Makova and
Francesca Chiaromonte and
Simone Vantini},
title = {IWTomics: testing high-resolution sequence-based 'Omics' data at multiple
locations and scales},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {2289--2291},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty090},
doi = {10.1093/BIOINFORMATICS/BTY090},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CremonaPCMCV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DadanehZQ18,
author = {Siamak Zamani Dadaneh and
Mingyuan Zhou and
Xiaoning Qian},
title = {Covariate-dependent negative binomial factor analysis of {RNA} sequencing
data},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i61--i69},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty237},
doi = {10.1093/BIOINFORMATICS/BTY237},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DadanehZQ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DadanehZQ18a,
author = {Siamak Zamani Dadaneh and
Mingyuan Zhou and
Xiaoning Qian},
title = {Bayesian negative binomial regression for differential expression
with confounding factors},
journal = {Bioinform.},
volume = {34},
number = {19},
pages = {3349--3356},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty330},
doi = {10.1093/BIOINFORMATICS/BTY330},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DadanehZQ18a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DadiSPASRR18,
author = {Temesgen Hailemariam Dadi and
Enrico Siragusa and
Vitor Piro and
Andreas Andrusch and
Enrico Seiler and
Bernhard Y. Renard and
Knut Reinert},
title = {DREAM-Yara: an exact read mapper for very large databases with short
update time},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i766--i772},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty567},
doi = {10.1093/BIOINFORMATICS/BTY567},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DadiSPASRR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DagleyM18,
author = {Michael J. Dagley and
Malcolm J. McConville},
title = {DExSI: a new tool for the rapid quantitation of 13C-labelled metabolites
detected by {GC-MS}},
journal = {Bioinform.},
volume = {34},
number = {11},
pages = {1957--1958},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty025},
doi = {10.1093/BIOINFORMATICS/BTY025},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DagleyM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DallmanASJPSHMU18,
author = {Timothy Dallman and
Philip Ashton and
Ulf Schafer and
Aleksey Jironkin and
Anais Painset and
Sharif Shaaban and
Hassan Hartman and
Richard Myers and
Anthony Underwood and
Claire Jenkins and
Kathie Grant},
title = {SnapperDB: a database solution for routine sequencing analysis of
bacterial isolates},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {3028--3029},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty212},
doi = {10.1093/BIOINFORMATICS/BTY212},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DallmanASJPSHMU18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DanekD18,
author = {Agnieszka Danek and
Sebastian Deorowicz},
title = {{GTC:} how to maintain huge genotype collections in a compressed form},
journal = {Bioinform.},
volume = {34},
number = {11},
pages = {1834--1840},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty023},
doi = {10.1093/BIOINFORMATICS/BTY023},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DanekD18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DangLNV18,
author = {Thanh Hai Dang and
Hoang{-}Quynh Le and
Trang M. Nguyen and
Sinh T. Vu},
title = {{D3NER:} biomedical named entity recognition using CRF-biLSTM improved
with fine-tuned embeddings of various linguistic information},
journal = {Bioinform.},
volume = {34},
number = {20},
pages = {3539--3546},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty356},
doi = {10.1093/BIOINFORMATICS/BTY356},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DangLNV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DardeGBLCSBCMJC18,
author = {Thomas A. Darde and
Pierre Gaudriault and
R{\'{e}}mi Beranger and
Cl{\'{e}}ment Lancien and
Anna{\"{e}}lle Caillarec{-}Joly and
Olivier Sallou and
Nathalie Bonvallot and
C{\'{e}}cile Chevrier and
S{\'{e}}verine Mazaud{-}Guittot and
Bernard J{\'{e}}gou and
Olivier Collin and
Emmanuelle Becker and
Antoine D. Rolland and
Fr{\'{e}}d{\'{e}}ric Chalmel},
title = {TOXsIgN: a cross-species repository for toxicogenomic signatures},
journal = {Bioinform.},
volume = {34},
number = {12},
pages = {2116--2122},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty040},
doi = {10.1093/BIOINFORMATICS/BTY040},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DardeGBLCSBCMJC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DeepaisarnTTSM18,
author = {Somrudee Deepaisarn and
Paul D. Tar and
Neil A. Thacker and
A. Seepujak and
A. W. McMahon},
title = {Quantifying biological samples using Linear Poisson Independent Component
Analysis for MALDI-ToF mass spectra},
journal = {Bioinform.},
volume = {34},
number = {6},
pages = {1001--1008},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx630},
doi = {10.1093/BIOINFORMATICS/BTX630},
timestamp = {Thu, 24 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DeepaisarnTTSM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DelehelleCALB18,
author = {Franklin Delehelle and
Sylvain Cussat{-}Blanc and
Jean{-}Marc Alliot and
Herv{\'{e}} Luga and
Patricia Balaresque},
title = {{ASGART:} fast and parallel genome scale segmental duplications mapping},
journal = {Bioinform.},
volume = {34},
number = {16},
pages = {2708--2714},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty172},
doi = {10.1093/BIOINFORMATICS/BTY172},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DelehelleCALB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DengZLZXW18,
author = {Wenping Deng and
Kui Zhang and
Sanzhen Liu and
Patrick X. Zhao and
Shizhong Xu and
Hairong Wei},
title = {JRmGRN: joint reconstruction of multiple gene regulatory networks
with common hub genes using data from multiple tissues or conditions},
journal = {Bioinform.},
volume = {34},
number = {20},
pages = {3470--3478},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty354},
doi = {10.1093/BIOINFORMATICS/BTY354},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DengZLZXW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DerevyankoGBL18,
author = {Georgy Derevyanko and
Sergei Grudinin and
Yoshua Bengio and
Guillaume Lamoureux},
title = {Deep convolutional networks for quality assessment of protein folds},
journal = {Bioinform.},
volume = {34},
number = {23},
pages = {4046--4053},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty494},
doi = {10.1093/BIOINFORMATICS/BTY494},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DerevyankoGBL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DerkachZC18,
author = {Andriy Derkach and
Haoyu Zhang and
Nilanjan Chatterjee},
title = {Power Analysis for Genetic Association Test {(PAGEANT)} provides insights
to challenges for rare variant association studies},
journal = {Bioinform.},
volume = {34},
number = {9},
pages = {1506--1513},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx770},
doi = {10.1093/BIOINFORMATICS/BTX770},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DerkachZC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Desvillechabrol18,
author = {Dimitri Desvillechabrol and
Rachel Legendre and
Claire Rioualen and
Christiane Bouchier and
Jacques van Helden and
Sean Kennedy and
Thomas Cokelaer},
title = {Sequanix: a dynamic graphical interface for Snakemake workflows},
journal = {Bioinform.},
volume = {34},
number = {11},
pages = {1934--1936},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty034},
doi = {10.1093/BIOINFORMATICS/BTY034},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Desvillechabrol18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DeveauDOBBCCLCB18,
author = {Paul Deveau and
Leo Colmet Daage and
Derek Oldridge and
Virginie Bernard and
Angela Bellini and
Mathieu Chicard and
Nathalie Clement and
Eve Lapouble and
Valerie Combaret and
Anne Boland and
Vincent Meyer and
Jean{-}Francois Deleuze and
Isabelle Janoueix{-}Lerosey and
Emmanuel Barillot and
Olivier Delattre and
John M. Maris and
Gudrun Schleiermacher and
Valentina Boeva},
title = {QuantumClone: clonal assessment of functional mutations in cancer
based on a genotype-aware method for clonal reconstruction},
journal = {Bioinform.},
volume = {34},
number = {11},
pages = {1808--1816},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty016},
doi = {10.1093/BIOINFORMATICS/BTY016},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DeveauDOBBCCLCB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DhandaVHGPS18,
author = {Sandeep Kumar Dhanda and
Randi Vita and
Brendan Ha and
Alba Grifoni and
Bjoern Peters and
Alessandro Sette},
title = {ImmunomeBrowser: a tool to aggregate and visualize complex and heterogeneous
epitopes in reference proteins},
journal = {Bioinform.},
volume = {34},
number = {22},
pages = {3931--3933},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty463},
doi = {10.1093/BIOINFORMATICS/BTY463},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DhandaVHGPS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Diaz-Uriarte18,
author = {Ram{\'{o}}n D{\'{\i}}az{-}Uriarte},
title = {Cancer progression models and fitness landscapes: a many-to-many relationship},
journal = {Bioinform.},
volume = {34},
number = {5},
pages = {836--844},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx663},
doi = {10.1093/BIOINFORMATICS/BTX663},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Diaz-Uriarte18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Dimitrakopoulos18,
author = {Christos Dimitrakopoulos and
Sravanth Kumar Hindupur and
Luca H{\"{a}}fliger and
Jonas Behr and
Hesam Montazeri and
Michael N. Hall and
Niko Beerenwinkel},
title = {Network-based integration of multi-omics data for prioritizing cancer
genes},
journal = {Bioinform.},
volume = {34},
number = {14},
pages = {2441--2448},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty148},
doi = {10.1093/BIOINFORMATICS/BTY148},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Dimitrakopoulos18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DingLH18,
author = {Jun Ding and
Xiaoman Li and
Haiyan Hu},
title = {CCmiR: a computational approach for competitive and cooperative microRNA
binding prediction},
journal = {Bioinform.},
volume = {34},
number = {2},
pages = {198--206},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx606},
doi = {10.1093/BIOINFORMATICS/BTX606},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DingLH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DingWC18,
author = {Hongxu Ding and
Wanxin Wang and
Andrea Califano},
title = {iterClust: a statistical framework for iterative clustering analysis},
journal = {Bioinform.},
volume = {34},
number = {16},
pages = {2865--2866},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty176},
doi = {10.1093/BIOINFORMATICS/BTY176},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DingWC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DirmeierFMT18,
author = {Simon Dirmeier and
Christiane Fuchs and
Nikola S. M{\"{u}}ller and
Fabian J. Theis},
title = {netReg: network-regularized linear models for biological association
studies},
journal = {Bioinform.},
volume = {34},
number = {5},
pages = {896--898},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx677},
doi = {10.1093/BIOINFORMATICS/BTX677},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DirmeierFMT18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DongPZY18,
author = {Runze Dong and
Zhenling Peng and
Yang Zhang and
Jianyi Yang},
title = {mTM-align: an algorithm for fast and accurate multiple protein structure
alignment},
journal = {Bioinform.},
volume = {34},
number = {10},
pages = {1719--1725},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx828},
doi = {10.1093/BIOINFORMATICS/BTX828},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DongPZY18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DonyMWFSL18,
author = {Leander Dony and
Jonas Mackerodt and
Scott Ward and
Sarah Filippi and
Michael P. H. Stumpf and
Juliane Liepe},
title = {PEITH({\(\Theta\)}): perfecting experiments with information theory
in Python with {GPU} support},
journal = {Bioinform.},
volume = {34},
number = {7},
pages = {1249--1250},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx776},
doi = {10.1093/BIOINFORMATICS/BTX776},
timestamp = {Mon, 01 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DonyMWFSL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DooseBWH18,
author = {Gero Doose and
Stephan H. Bernhart and
Rabea Wagener and
Steve Hoffmann},
title = {{DIEGO:} detection of differential alternative splicing using Aitchison's
geometry},
journal = {Bioinform.},
volume = {34},
number = {6},
pages = {1066--1068},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx690},
doi = {10.1093/BIOINFORMATICS/BTX690},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DooseBWH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DorelKGSPBWB18,
author = {Mathurin Dorel and
Bertram Klinger and
Torsten Gross and
Anja Sieber and
Anirudh Prahallad and
Evert Bosdriesz and
Lodewyk F. A. Wessels and
Nils Bl{\"{u}}thgen},
title = {Modelling signalling networks from perturbation data},
journal = {Bioinform.},
volume = {34},
number = {23},
pages = {4079--4086},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty473},
doi = {10.1093/BIOINFORMATICS/BTY473},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DorelKGSPBWB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DorierGBS18,
author = {Julien Dorier and
Dimos Goundaroulis and
Fabrizio Benedetti and
Andrzej Stasiak},
title = {Knoto-ID: a tool to study the entanglement of open protein chains
using the concept of knotoids},
journal = {Bioinform.},
volume = {34},
number = {19},
pages = {3402--3404},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty365},
doi = {10.1093/BIOINFORMATICS/BTY365},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DorierGBS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DrostGLQG18,
author = {Hajk{-}Georg Drost and
Alexander Gabel and
Jialin Liu and
Marcel Quint and
Ivo Grosse},
title = {myTAI: evolutionary transcriptomics with {R}},
journal = {Bioinform.},
volume = {34},
number = {9},
pages = {1589--1590},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx835},
doi = {10.1093/BIOINFORMATICS/BTX835},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DrostGLQG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DrubayGM18,
author = {Damien Drubay and
Daniel Gautheret and
Stefan Michiels},
title = {A benchmark study of scoring methods for non-coding mutations},
journal = {Bioinform.},
volume = {34},
number = {10},
pages = {1635--1641},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty008},
doi = {10.1093/BIOINFORMATICS/BTY008},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DrubayGM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DuLZYYRHGSS18,
author = {Lei Du and
Kefei Liu and
Tuo Zhang and
Xiaohui Yao and
Jingwen Yan and
Shannon L. Risacher and
Junwei Han and
Lei Guo and
Andrew J. Saykin and
Li Shen},
title = {A novel {SCCA} approach via truncated {\(\mathscr{l}\)}1-norm and
truncated group lasso for brain imaging genetics},
journal = {Bioinform.},
volume = {34},
number = {2},
pages = {278--285},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx594},
doi = {10.1093/BIOINFORMATICS/BTX594},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DuLZYYRHGSS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DuZLZY18,
author = {Lianming Du and
Chi Zhang and
Qin Liu and
Xiuyue Zhang and
Bisong Yue},
title = {Krait: an ultrafast tool for genome-wide survey of microsatellites
and primer design},
journal = {Bioinform.},
volume = {34},
number = {4},
pages = {681--683},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx665},
doi = {10.1093/BIOINFORMATICS/BTX665},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DuZLZY18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DucheminGCABBBC18,
author = {Wandrille Duchemin and
Guillaume Gence and
Anne{-}Muriel Arigon Chifolleau and
Lars Arvestad and
Mukul S. Bansal and
Vincent Berry and
Bastien Boussau and
Fran{\c{c}}ois Chevenet and
Nicolas Comte and
Adri{\'{a}}n A. Dav{\'{\i}}n and
Christophe Dessimoz and
David Dylus and
Damir Hasic and
Diego Mallo and
R{\'{e}}mi Planel and
David Posada and
C{\'{e}}line Scornavacca and
Gergely J. Sz{\"{o}}llosi and
Louxin Zhang and
Eric Tannier and
Vincent Daubin},
title = {RecPhyloXML: a format for reconciled gene trees},
journal = {Bioinform.},
volume = {34},
number = {21},
pages = {3646--3652},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty389},
doi = {10.1093/BIOINFORMATICS/BTY389},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DucheminGCABBBC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DucheneDH18,
author = {David A. Duch{\^{e}}ne and
Sebasti{\'{a}}n Duch{\^{e}}ne and
Simon Y. W. Ho},
title = {PhyloMAd: efficient assessment of phylogenomic model adequacy},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {2300--2301},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty103},
doi = {10.1093/BIOINFORMATICS/BTY103},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DucheneDH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DuraiS18,
author = {Dilip A. Durai and
Marcel H. Schulz},
title = {In silico read normalization using set multi-cover optimization},
journal = {Bioinform.},
volume = {34},
number = {19},
pages = {3273--3280},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty307},
doi = {10.1093/BIOINFORMATICS/BTY307},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DuraiS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DurifMMMLP18,
author = {Ghislain Durif and
Laurent Modolo and
Jakob Michaelsson and
Jeff E. Mold and
Sophie Lambert{-}Lacroix and
Franck Picard},
title = {High dimensional classification with combined adaptive sparse {PLS}
and logistic regression},
journal = {Bioinform.},
volume = {34},
number = {3},
pages = {485--493},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx571},
doi = {10.1093/BIOINFORMATICS/BTX571},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DurifMMMLP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EatonWS18,
author = {Jesse Eaton and
Jingyi Wang and
Russell Schwartz},
title = {Deconvolution and phylogeny inference of structural variations in
tumor genomic samples},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i357--i365},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty270},
doi = {10.1093/BIOINFORMATICS/BTY270},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/EatonWS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Edgar18,
author = {Robert C. Edgar},
title = {Updating the 97{\%} identity threshold for 16S ribosomal {RNA} OTUs},
journal = {Bioinform.},
volume = {34},
number = {14},
pages = {2371--2375},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty113},
doi = {10.1093/BIOINFORMATICS/BTY113},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Edgar18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EdmandsHR18,
author = {William M. B. Edmands and
Josie Hayes and
Stephen M. Rappaport},
title = {SimExTargId: a comprehensive package for real-time {LC-MS} data acquisition
and analysis},
journal = {Bioinform.},
volume = {34},
number = {20},
pages = {3589--3590},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty218},
doi = {10.1093/BIOINFORMATICS/BTY218},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/EdmandsHR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EggenhoferHBS18,
author = {Florian Eggenhofer and
Ivo L. Hofacker and
Rolf Backofen and
Christian H{\"{o}}ner zu Siederdissen},
title = {{CMV:} visualization for {RNA} and protein family models and their
comparisons},
journal = {Bioinform.},
volume = {34},
number = {15},
pages = {2676--2678},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty158},
doi = {10.1093/BIOINFORMATICS/BTY158},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/EggenhoferHBS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/El-Kebir18,
author = {Mohammed El{-}Kebir},
title = {SPhyR: tumor phylogeny estimation from single-cell sequencing data
under loss and error},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i671--i679},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty589},
doi = {10.1093/BIOINFORMATICS/BTY589},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/El-Kebir18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ElliottLWRR18,
author = {Andrew Elliott and
Elizabeth Leicht and
Alan Whitmore and
Gesine Reinert and
Felix Reed{-}Tsochas},
title = {A nonparametric significance test for sampled networks},
journal = {Bioinform.},
volume = {34},
number = {1},
pages = {64--71},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx419},
doi = {10.1093/BIOINFORMATICS/BTX419},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ElliottLWRR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ElworthABDN18,
author = {Ryan A. Leo Elworth and
Chabrielle Allen and
Travis Benedict and
Peter Dulworth and
Luay Nakhleh},
title = {{ALPHA:} a toolkit for Automated Local PHylogenomic Analyses},
journal = {Bioinform.},
volume = {34},
number = {16},
pages = {2848--2850},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty173},
doi = {10.1093/BIOINFORMATICS/BTY173},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ElworthABDN18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ElyanowWR18,
author = {Rebecca Elyanow and
Hsin{-}Ta Wu and
Benjamin J. Raphael},
title = {Identifying structural variants using linked-read sequencing data},
journal = {Bioinform.},
volume = {34},
number = {2},
pages = {353--360},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx712},
doi = {10.1093/BIOINFORMATICS/BTX712},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ElyanowWR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ErenM18,
author = {Kemal Eren and
Ben Murrell},
title = {{RIFRAF:} a frame-resolving consensus algorithm},
journal = {Bioinform.},
volume = {34},
number = {22},
pages = {3817--3824},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty426},
doi = {10.1093/BIOINFORMATICS/BTY426},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ErenM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Erhard18,
author = {Florian Erhard},
title = {Estimating pseudocounts and fold changes for digital expression measurements},
journal = {Bioinform.},
volume = {34},
number = {23},
pages = {4054--4063},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty471},
doi = {10.1093/BIOINFORMATICS/BTY471},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Erhard18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EscalonaRP18,
author = {Merly Escalona and
Sara Rocha and
David Posada},
title = {NGSphy: phylogenomic simulation of next-generation sequencing data},
journal = {Bioinform.},
volume = {34},
number = {14},
pages = {2506--2507},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty146},
doi = {10.1093/BIOINFORMATICS/BTY146},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/EscalonaRP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EscudieABMCVMHC18,
author = {Fr{\'{e}}d{\'{e}}ric Escudi{\'{e}} and
Lucas Auer and
Maria Bernard and
Mahendra Mariadassou and
Laurent Cauquil and
Katia Vidal and
Sarah Maman and
Guillermina Hernandez{-}Raquet and
Sylvie Combes and
G{\'{e}}raldine Pascal},
title = {{FROGS:} Find, Rapidly, OTUs with Galaxy Solution},
journal = {Bioinform.},
volume = {34},
number = {8},
pages = {1287--1294},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx791},
doi = {10.1093/BIOINFORMATICS/BTX791},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/EscudieABMCVMHC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FabregatSVMPSDH18,
author = {Antonio Fabregat and
Konstantinos Sidiropoulos and
Guilherme Viteri and
Pablo Mar{\'{\i}}n{-}Garc{\'{\i}}a and
Peipei Ping and
Lincoln Stein and
Peter D'Eustachio and
Henning Hermjakob},
title = {Reactome diagram viewer: data structures and strategies to boost performance},
journal = {Bioinform.},
volume = {34},
number = {7},
pages = {1208--1214},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx752},
doi = {10.1093/BIOINFORMATICS/BTX752},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FabregatSVMPSDH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FabrisDPMF18,
author = {Fabio Fabris and
Aoife Doherty and
Daniel Palmer and
Jo{\~{a}}o Pedro de Magalh{\~{a}}es and
Alex Alves Freitas},
title = {A new approach for interpreting Random Forest models and its application
to the biology of ageing},
journal = {Bioinform.},
volume = {34},
number = {14},
pages = {2449--2456},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty087},
doi = {10.1093/BIOINFORMATICS/BTY087},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FabrisDPMF18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FangMTZYWCCT18,
author = {Zhou Fang and
Tianzhou Ma and
Gong Tang and
Li Zhu and
Qi Yan and
Ting Wang and
Juan C. Celed{\'{o}}n and
Wei Chen and
George C. Tseng},
title = {Bayesian integrative model for multi-omics data with missingness},
journal = {Bioinform.},
volume = {34},
number = {22},
pages = {3801--3808},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty775},
doi = {10.1093/BIOINFORMATICS/BTY775},
timestamp = {Mon, 14 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FangMTZYWCCT18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FeenstraAWSMTHH18,
author = {K. Anton Feenstra and
Sanne Abeln and
Johan A. Westerhuis and
Filipe Brancos dos Santos and
Douwe Molenaar and
Bas Teusink and
Huub C. J. Hoefsloot and
Jaap Heringa},
title = {Training for translation between disciplines: a philosophy for life
and data sciences curricula},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i4--i12},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty233},
doi = {10.1093/BIOINFORMATICS/BTY233},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FeenstraAWSMTHH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FehlmannBAFHKLR18,
author = {Tobias Fehlmann and
Christina Backes and
Julia Alles and
Ulrike Fischer and
Martin Hart and
Fabian Kern and
Hilde Langseth and
Trine Rounge and
Sinan Ugur Umu and
Mustafa Kahraman and
Thomas Laufer and
Jan Haas and
Cord Staehler and
Nicole Ludwig and
Matthias H{\"{u}}benthal and
Benjamin Meder and
Andre Franke and
Hans{-}Peter Lenhof and
Eckart Meese and
Andreas Keller},
title = {A high-resolution map of the human small non-coding transcriptome},
journal = {Bioinform.},
volume = {34},
number = {10},
pages = {1621--1628},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx814},
doi = {10.1093/BIOINFORMATICS/BTX814},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FehlmannBAFHKLR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FeiWLLZH18,
author = {Yuhan Fei and
Rui Wang and
Haoyuan Li and
Shu Liu and
Hongsheng Zhang and
Ji Huang},
title = {{DPMIND:} degradome-based plant miRNA-target interaction and network
database},
journal = {Bioinform.},
volume = {34},
number = {9},
pages = {1618--1620},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx824},
doi = {10.1093/BIOINFORMATICS/BTX824},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FeiWLLZH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FeiZSY18,
author = {Teng Fei and
Tengjiao Zhang and
Weiyang Shi and
Tianwei Yu},
title = {Mitigating the adverse impact of batch effects in sample pattern detection},
journal = {Bioinform.},
volume = {34},
number = {15},
pages = {2634--2641},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty117},
doi = {10.1093/BIOINFORMATICS/BTY117},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FeiZSY18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FilatovBK18,
author = {Gleb Filatov and
Bruno Bauwens and
Attila Kert{\'{e}}sz{-}Farkas},
title = {LZW-Kernel: fast kernel utilizing variable length code blocks from
{LZW} compressors for protein sequence classification},
journal = {Bioinform.},
volume = {34},
number = {19},
pages = {3281--3288},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty349},
doi = {10.1093/BIOINFORMATICS/BTY349},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FilatovBK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FletcherBMC18,
author = {Stephen J. Fletcher and
Mikael Bod{\'{e}}n and
Neena Mitter and
Bernard J. Carroll},
title = {{SCRAM:} a pipeline for fast index-free small {RNA} read alignment
and visualization},
journal = {Bioinform.},
volume = {34},
number = {15},
pages = {2670--2672},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty161},
doi = {10.1093/BIOINFORMATICS/BTY161},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FletcherBMC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FoggKS18,
author = {Christiana N. Fogg and
Diane E. Kovats and
Ron Shamir},
title = {2018 {ISCB} Overton Prize awarded to Cole Trapnell},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {2330--2331},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty360},
doi = {10.1093/BIOINFORMATICS/BTY360},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FoggKS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FoggKS18a,
author = {Christiana N. Fogg and
Diane E. Kovats and
Ron Shamir},
title = {Message from the {ISCB:} 2018 {ISCB} Accomplishments by a Senior Scientist
Award},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {2332--2333},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty284},
doi = {10.1093/BIOINFORMATICS/BTY284},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FoggKS18a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FoggKS18b,
author = {Christiana N. Fogg and
Diane E. Kovats and
Ron Shamir},
title = {Message from the {ISCB:} 2018 Outstanding Contributions to {ISCB}
Award: Russ Altman},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {2334--2335},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty308},
doi = {10.1093/BIOINFORMATICS/BTY308},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FoggKS18b.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FoggKS18c,
author = {Christiana N. Fogg and
Diane E. Kovats and
Ron Shamir},
title = {2018 {ISCB} Innovator Award recognizes M. Madan Babu},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {2336--2337},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty328},
doi = {10.1093/BIOINFORMATICS/BTY328},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FoggKS18c.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ForslundPCSAHMP18,
author = {Kristoffer Forslund and
C{\'{e}}cile Pereira and
Salvador Capella{-}Guti{\'{e}}rrez and
Alan W. Sousa da Silva and
Adrian M. Altenhoff and
Jaime Huerta{-}Cepas and
Matthieu Muffato and
Mateus Patricio and
Klaas Vandepoele and
Ingo Ebersberger and
Judith A. Blake and
Jesualdo Tom{\'{a}}s Fern{\'{a}}ndez{-}Breis and
The Quest for Orthologs Consortium and
Brigitte Boeckmann and
Toni Gabald{\'{o}}n and
Erik L. L. Sonnhammer and
Christophe Dessimoz and
Suzanna Lewis},
title = {Gearing up to handle the mosaic nature of life in the quest for orthologs},
journal = {Bioinform.},
volume = {34},
number = {2},
pages = {323--329},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx542},
doi = {10.1093/BIOINFORMATICS/BTX542},
timestamp = {Fri, 08 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ForslundPCSAHMP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FranksCW18,
author = {Jennifer M. Franks and
Guoshuai Cai and
Michael L. Whitfield},
title = {Feature specific quantile normalization enables cross-platform classification
of molecular subtypes using gene expression data},
journal = {Bioinform.},
volume = {34},
number = {11},
pages = {1868--1874},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty026},
doi = {10.1093/BIOINFORMATICS/BTY026},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FranksCW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FriouxFTS18,
author = {Cl{\'{e}}mence Frioux and
Enora Fremy and
Camille Trottier and
Anne Siegel},
title = {Scalable and exhaustive screening of metabolic functions carried out
by microbial consortia},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i934--i943},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty588},
doi = {10.1093/BIOINFORMATICS/BTY588},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FriouxFTS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Frost18,
author = {H. Robert Frost},
title = {Computation and application of tissue-specific gene set weights},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {2957--2964},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty217},
doi = {10.1093/BIOINFORMATICS/BTY217},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Frost18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Fu0DY18,
author = {Guangyuan Fu and
Jun Wang and
Carlotta Domeniconi and
Guoxian Yu},
title = {Matrix factorization-based data fusion for the prediction of lncRNA-disease
associations},
journal = {Bioinform.},
volume = {34},
number = {9},
pages = {1529--1537},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx794},
doi = {10.1093/BIOINFORMATICS/BTX794},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Fu0DY18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FuMYXCSA18,
author = {Shuhua Fu and
Yingke Ma and
Hui Yao and
Zhichao Xu and
Shilin Chen and
Jingyuan Song and
Kin Fai Au},
title = {IDP-denovo: de novo transcriptome assembly and isoform annotation
by hybrid sequencing},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {2168--2176},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty098},
doi = {10.1093/BIOINFORMATICS/BTY098},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FuMYXCSA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FusaniWPC18,
author = {Lucia Fusani and
Ian D. Wall and
David Palmer and
{\'{A}}lvaro Cort{\'{e}}s Cabrera},
title = {Optimal water networks in protein cavities with GAsol and 3D-RISM},
journal = {Bioinform.},
volume = {34},
number = {11},
pages = {1947--1948},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty024},
doi = {10.1093/BIOINFORMATICS/BTY024},
timestamp = {Mon, 04 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FusaniWPC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GaiE18,
author = {Lisa Gai and
Eleazar Eskin},
title = {Finding associated variants in genome-wide association studies on
multiple traits},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i467--i474},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty249},
doi = {10.1093/BIOINFORMATICS/BTY249},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GaiE18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GaitatzesJSV18,
author = {Athanasios Gaitatzes and
Sarah H. Johnson and
James B. Smadbeck and
George Vasmatzis},
title = {Genome U-Plot: a whole genome visualization},
journal = {Bioinform.},
volume = {34},
number = {10},
pages = {1629--1634},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx829},
doi = {10.1093/BIOINFORMATICS/BTX829},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GaitatzesJSV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GaleaLV18,
author = {Dieter Galea and
Ivan Laponogov and
Kirill A. Veselkov},
title = {Exploiting and assessing multi-source data for supervised biomedical
named entity recognition},
journal = {Bioinform.},
volume = {34},
number = {14},
pages = {2474--2482},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty152},
doi = {10.1093/BIOINFORMATICS/BTY152},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GaleaLV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GaliliOSS18,
author = {Tal Galili and
Alan O'Callaghan and
Jonathan Sidi and
Carson Sievert},
title = {heatmaply: an {R} package for creating interactive cluster heatmaps
for online publishing},
journal = {Bioinform.},
volume = {34},
number = {9},
pages = {1600--1602},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx657},
doi = {10.1093/BIOINFORMATICS/BTX657},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GaliliOSS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GaoUGG18,
author = {Nan Papili Gao and
S. M. Minhaz Ud{-}Dean and
Olivier Gandrillon and
Rudiyanto Gunawan},
title = {{SINCERITIES:} inferring gene regulatory networks from time-stamped
single cell transcriptional expression profiles},
journal = {Bioinform.},
volume = {34},
number = {2},
pages = {258--266},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx575},
doi = {10.1093/BIOINFORMATICS/BTX575},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GaoUGG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GaoWZWCG18,
author = {Yubang Gao and
Huiyuan Wang and
Hangxiao Zhang and
Yongsheng Wang and
Jinfeng Chen and
Lian{-}Feng Gu},
title = {{PRAPI:} post-transcriptional regulation analysis pipeline for Iso-Seq},
journal = {Bioinform.},
volume = {34},
number = {9},
pages = {1580--1582},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx830},
doi = {10.1093/BIOINFORMATICS/BTX830},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GaoWZWCG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GargRNGDM18,
author = {Shilpa Garg and
Mikko Rautiainen and
Adam M. Novak and
Erik Garrison and
Richard Durbin and
Tobias Marschall},
title = {A graph-based approach to diploid genome assembly},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i105--i114},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty279},
doi = {10.1093/BIOINFORMATICS/BTY279},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GargRNGDM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GaudeletMP18,
author = {Thomas Gaudelet and
No{\"{e}}l Malod{-}Dognin and
Natasa Przulj},
title = {Higher-order molecular organization as a source of biological function},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i944--i953},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty570},
doi = {10.1093/BIOINFORMATICS/BTY570},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GaudeletMP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GawronskiUZLNRM18,
author = {Alexander Gawronski and
Michael Uhl and
Yajia Zhang and
Yen{-}Yi Lin and
Yashar S. Niknafs and
Varune R. Ramnarine and
Rohit Malik and
Felix Feng and
Arul M. Chinnaiyan and
Colin C. Collins and
S{\"{u}}leyman Cenk Sahinalp and
Rolf Backofen},
title = {MechRNA: prediction of lncRNA mechanisms from {RNA-RNA} and RNA-protein
interactions},
journal = {Bioinform.},
volume = {34},
number = {18},
pages = {3101--3110},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty208},
doi = {10.1093/BIOINFORMATICS/BTY208},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GawronskiUZLNRM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GeoffroyHKSPDM18,
author = {V{\'{e}}ronique Geoffroy and
Yvan Herenger and
Arnaud Kress and
Corinne Stoetzel and
Am{\'{e}}lie Piton and
H{\'{e}}l{\`{e}}ne Dollfus and
Jean Muller},
title = {AnnotSV: an integrated tool for structural variations annotation},
journal = {Bioinform.},
volume = {34},
number = {20},
pages = {3572--3574},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty304},
doi = {10.1093/BIOINFORMATICS/BTY304},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GeoffroyHKSPDM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GeorgescuW18,
author = {Constantin Georgescu and
Jonathan D. Wren},
title = {Algorithmic identification of discrepancies between published ratios
and their reported confidence intervals and P-values},
journal = {Bioinform.},
volume = {34},
number = {10},
pages = {1758--1766},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx811},
doi = {10.1093/BIOINFORMATICS/BTX811},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GeorgescuW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GhandikotaHM18,
author = {Sudhir Ghandikota and
Gurjit K. Khurana Hershey and
Tesfaye B. Mersha},
title = {{GENEASE:} real time bioinformatics tool for multi-omics and disease
ontology exploration, analysis and visualization},
journal = {Bioinform.},
volume = {34},
number = {18},
pages = {3160--3168},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty182},
doi = {10.1093/BIOINFORMATICS/BTY182},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GhandikotaHM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GhareghaniPSMEK18,
author = {Maryam Ghareghani and
David Porubsky and
Ashley D. Sanders and
Sascha Meiers and
Evan E. Eichler and
Jan O. Korbel and
Tobias Marschall},
title = {Strand-seq enables reliable separation of long reads by chromosome
via expectation maximization},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i115--i123},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty290},
doi = {10.1093/BIOINFORMATICS/BTY290},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GhareghaniPSMEK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GhaziCHMES18,
author = {Andrew R. Ghazi and
Edward S. Chen and
David M. Henke and
Namrata Madan and
Leonard C. Edelstein and
Chad A. Shaw},
title = {Design tools for {MPRA} experiments},
journal = {Bioinform.},
volume = {34},
number = {15},
pages = {2682--2683},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty150},
doi = {10.1093/BIOINFORMATICS/BTY150},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GhaziCHMES18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GiambartolomeiL18,
author = {Claudia Giambartolomei and
Jimmy Zhenli Liu and
Wen Zhang and
Mads Hauberg and
Huwenbo Shi and
James Boocock and
Joe Pickrell and
Andrew E. Jaffe and
The CommonMind Consortium and
Bogdan Pasaniuc and
Panos Roussos},
title = {A Bayesian framework for multiple trait colocalization from summary
association statistics},
journal = {Bioinform.},
volume = {34},
number = {15},
pages = {2538--2545},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty147},
doi = {10.1093/BIOINFORMATICS/BTY147},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GiambartolomeiL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GiancarloRU18,
author = {Raffaele Giancarlo and
Simona E. Rombo and
Filippo Utro},
title = {In vitro versus in vivo compositional landscapes of histone sequence
preferences in eucaryotic genomes},
journal = {Bioinform.},
volume = {34},
number = {20},
pages = {3454--3460},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty799},
doi = {10.1093/BIOINFORMATICS/BTY799},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GiancarloRU18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GilF18,
author = {Nelson Gil and
Andr{\'{a}}s Fiser},
title = {Identifying functionally informative evolutionary sequence profiles},
journal = {Bioinform.},
volume = {34},
number = {8},
pages = {1278--1286},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx779},
doi = {10.1093/BIOINFORMATICS/BTX779},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GilF18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GiordanoSMN18,
author = {Francesca Giordano and
Maximilian R. Stammnitz and
Elizabeth P. Murchison and
Zemin Ning},
title = {scanPAV: a pipeline for extracting presence-absence variations in
genome pairs},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {3022--3024},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty189},
doi = {10.1093/BIOINFORMATICS/BTY189},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GiordanoSMN18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GiorgiB18,
author = {John M. Giorgi and
Gary D. Bader},
title = {Transfer learning for biomedical named entity recognition with neural
networks},
journal = {Bioinform.},
volume = {34},
number = {23},
pages = {4087--4094},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty449},
doi = {10.1093/BIOINFORMATICS/BTY449},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GiorgiB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GligorijevicBB18,
author = {Vladimir Gligorijevic and
Meet Barot and
Richard Bonneau},
title = {deepNF: deep network fusion for protein function prediction},
journal = {Bioinform.},
volume = {34},
number = {22},
pages = {3873--3881},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty440},
doi = {10.1093/BIOINFORMATICS/BTY440},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GligorijevicBB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GlouzonO18,
author = {Jean{-}Pierre S{\'{e}}hi Glouzon and
A{\"{\i}}da Ouangraoua},
title = {aliFreeFold: an alignment-free approach to predict secondary structure
from homologous {RNA} sequences},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i70--i78},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty234},
doi = {10.1093/BIOINFORMATICS/BTY234},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GlouzonO18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GoglevaDS18,
author = {Anna Gogleva and
Hajk{-}Georg Drost and
Sebastian Schornack},
title = {SecretSanta: flexible pipelines for functional secretome prediction},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {2295--2296},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty088},
doi = {10.1093/BIOINFORMATICS/BTY088},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GoglevaDS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GopalakrishnanJ18,
author = {Vishrawas Gopalakrishnan and
Kishlay Jha and
Guangxu Xun and
Hung Q. Ngo and
Aidong Zhang},
title = {Towards self-learning based hypotheses generation in biomedical text
domain},
journal = {Bioinform.},
volume = {34},
number = {12},
pages = {2103--2115},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx837},
doi = {10.1093/BIOINFORMATICS/BTX837},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GopalakrishnanJ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GopiDKN18,
author = {Soundhararajan Gopi and
Devanshu Devanshu and
Praveen Krishna and
Athi N. Naganathan},
title = {pStab: prediction of stable mutants, unfolding curves, stability maps
and protein electrostatic frustration},
journal = {Bioinform.},
volume = {34},
number = {5},
pages = {875--877},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx697},
doi = {10.1093/BIOINFORMATICS/BTX697},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GopiDKN18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GorenLWW18,
author = {Emily Goren and
Peng Liu and
Chao Wang and
Chong Wang},
title = {BinQuasi: a peak detection method for ChIP-sequencing data with biological
replicates},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {2909--2917},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty227},
doi = {10.1093/BIOINFORMATICS/BTY227},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GorenLWW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GorjancH18,
author = {Gregor Gorjanc and
John M. Hickey},
title = {AlphaMate: a program for optimizing selection, maintenance of diversity
and mate allocation in breeding programs},
journal = {Bioinform.},
volume = {34},
number = {19},
pages = {3408--3411},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty375},
doi = {10.1093/BIOINFORMATICS/BTY375},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GorjancH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Gotoh18,
author = {Osamu Gotoh},
title = {Modeling one thousand intron length distributions with fitild},
journal = {Bioinform.},
volume = {34},
number = {19},
pages = {3258--3264},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty353},
doi = {10.1093/BIOINFORMATICS/BTY353},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Gotoh18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GozZT18,
author = {Eli Goz and
Zohar Zafrir and
Tamir Tuller},
title = {Universal evolutionary selection for high dimensional silent patterns
of information hidden in the redundancy of viral genetic code},
journal = {Bioinform.},
volume = {34},
number = {19},
pages = {3241--3248},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty351},
doi = {10.1093/BIOINFORMATICS/BTY351},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GozZT18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GranaLFPG18,
author = {Osvaldo Gra{\~{n}}a and
Hugo L{\'{o}}pez{-}Fern{\'{a}}ndez and
Florentino Fdez{-}Riverola and
David G. Pisano and
Daniel Glez{-}Pe{\~{n}}a},
title = {Bicycle: a bioinformatics pipeline to analyze bisulfite sequencing
data},
journal = {Bioinform.},
volume = {34},
number = {8},
pages = {1414--1415},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx778},
doi = {10.1093/BIOINFORMATICS/BTX778},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GranaLFPG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GreenGB18,
author = {Christopher J. Green and
Matthew R. Gazzara and
Yoseph Barash},
title = {{MAJIQ-SPEL:} web-tool to interrogate classical and complex splicing
variations from RNA-Seq data},
journal = {Bioinform.},
volume = {34},
number = {2},
pages = {300--302},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx565},
doi = {10.1093/BIOINFORMATICS/BTX565},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GreenGB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GreensideSFK18,
author = {Peyton Greenside and
Tyler Shimko and
Polly Fordyce and
Anshul Kundaje},
title = {Discovering epistatic feature interactions from neural network models
of regulatory {DNA} sequences},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i629--i637},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty575},
doi = {10.1093/BIOINFORMATICS/BTY575},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GreensideSFK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuanCYCJ18,
author = {Jinting Guan and
Moliang Chen and
Congting Ye and
James J. Cai and
Guoli Ji},
title = {{AEGS:} identifying aberrantly expressed gene sets for differential
variability analysis},
journal = {Bioinform.},
volume = {34},
number = {5},
pages = {881--883},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx646},
doi = {10.1093/BIOINFORMATICS/BTX646},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuanCYCJ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuanLZZO18,
author = {Yuanfang Guan and
Tingyang Li and
Hongjiu Zhang and
Fan Zhu and
Gilbert S. Omenn},
title = {Prioritizing predictive biomarkers for gene essentiality in cancer
cells with mRNA expression data and {DNA} copy number profile},
journal = {Bioinform.},
volume = {34},
number = {23},
pages = {3975--3982},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty467},
doi = {10.1093/BIOINFORMATICS/BTY467},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuanLZZO18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GundelHH18,
author = {Michaela G{\"{u}}ndel and
Charles Tapley Hoyt and
Martin Hofmann{-}Apitius},
title = {{BEL2ABM:} agent-based simulation of static models in Biological Expression
Language},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {2316--2318},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty107},
doi = {10.1093/BIOINFORMATICS/BTY107},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GundelHH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuoLHOSZ18,
author = {Rui Guo and
Yan{-}Ran Li and
Shan He and
Le Ou{-}Yang and
Yiwen Sun and
Zexuan Zhu},
title = {RepLong: de novo repeat identification using long read sequencing
data},
journal = {Bioinform.},
volume = {34},
number = {7},
pages = {1099--1107},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx717},
doi = {10.1093/BIOINFORMATICS/BTX717},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuoLHOSZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuoLYMETHP18,
author = {Xuan Guo and
Zhou Li and
Qiuming Yao and
Ryan S. Mueller and
Jimmy K. Eng and
David L. Tabb and
IV William Judson Hervey and
Chongle Pan},
title = {Sipros Ensemble improves database searching and filtering for complex
metaproteomics},
journal = {Bioinform.},
volume = {34},
number = {5},
pages = {795--802},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx601},
doi = {10.1093/BIOINFORMATICS/BTX601},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuoLYMETHP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuoWW18,
author = {Fei Guo and
Dan Wang and
Lusheng Wang},
title = {Progressive approach for {SNP} calling and haplotype assembly using
single molecular sequencing data},
journal = {Bioinform.},
volume = {34},
number = {12},
pages = {2012--2018},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty059},
doi = {10.1093/BIOINFORMATICS/BTY059},
timestamp = {Tue, 12 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuoWW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuoZLLSZTZC18,
author = {Weifeng Guo and
Shao{-}Wu Zhang and
Li{-}Li Liu and
Fei Liu and
Qianqian Shi and
Lei Zhang and
Ying Tang and
Tao Zeng and
Luonan Chen},
title = {Discovering personalized driver mutation profiles of single samples
in cancer by network control strategy},
journal = {Bioinform.},
volume = {34},
number = {11},
pages = {1893--1903},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty006},
doi = {10.1093/BIOINFORMATICS/BTY006},
timestamp = {Thu, 05 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuoZLLSZTZC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuoZPZWN18,
author = {Weilong Guo and
Ping Zhu and
Matteo Pellegrini and
Michael Q. Zhang and
Xiangfeng Wang and
Zhongfu Ni},
title = {CGmapTools improves the precision of heterozygous {SNV} calls and
supports allele-specific methylation detection and visualization in
bisulfite-sequencing data},
journal = {Bioinform.},
volume = {34},
number = {3},
pages = {381--387},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx595},
doi = {10.1093/BIOINFORMATICS/BTX595},
timestamp = {Thu, 08 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuoZPZWN18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Gutierrez-Sacristan18,
author = {Alba Guti{\'{e}}rrez{-}Sacrist{\'{a}}n and
Romain Guedj and
Gabor Korodi and
Jason Stedman and
Laura In{\'{e}}s Furlong and
Chirag J. Patel and
Isaac S. Kohane and
Paul Avillach},
title = {Rcupcake: an {R} package for querying and analyzing biomedical data
through the {BD2K} {PIC-SURE} RESTful {API}},
journal = {Bioinform.},
volume = {34},
number = {8},
pages = {1431--1432},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx788},
doi = {10.1093/BIOINFORMATICS/BTX788},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Gutierrez-Sacristan18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Gutierrez-Sacristan18a,
author = {Alba Guti{\'{e}}rrez{-}Sacrist{\'{a}}n and
{\`{A}}lex Bravo and
Alexia Giannoula and
Miguel Angel Mayer and
Ferran Sanz and
Laura In{\'{e}}s Furlong},
title = {comoRbidity: an {R} package for the systematic analysis of disease
comorbidities},
journal = {Bioinform.},
volume = {34},
number = {18},
pages = {3228--3230},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty315},
doi = {10.1093/BIOINFORMATICS/BTY315},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Gutierrez-Sacristan18a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuyIRR18,
author = {Andrew J. Guy and
Vashti Irani and
Jack S. Richards and
Paul A. Ramsland},
title = {BioStructMap: a Python tool for integration of protein structure and
sequence-based features},
journal = {Bioinform.},
volume = {34},
number = {22},
pages = {3942--3944},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty474},
doi = {10.1093/BIOINFORMATICS/BTY474},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuyIRR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuzenkoS18,
author = {Dmytro Guzenko and
Sergei V. Strelkov},
title = {CCFold: rapid and accurate prediction of coiled-coil structures and
application to modelling intermediate filaments},
journal = {Bioinform.},
volume = {34},
number = {2},
pages = {215--222},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx551},
doi = {10.1093/BIOINFORMATICS/BTX551},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuzenkoS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HadfieldCGAAH18,
author = {James Hadfield and
Nicholas J. Croucher and
Richard J. Goater and
Khalil AbuDahab and
David M. Aanensen and
Simon R. Harris},
title = {Phandango: an interactive viewer for bacterial population genomics},
journal = {Bioinform.},
volume = {34},
number = {2},
pages = {292--293},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx610},
doi = {10.1093/BIOINFORMATICS/BTX610},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HadfieldCGAAH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HadfieldMBHPCSB18,
author = {James Hadfield and
Colin Megill and
Sidney M. Bell and
John Huddleston and
Barney Potter and
Charlton Callender and
Pavel Sagulenko and
Trevor Bedford and
Richard A. Neher},
title = {Nextstrain: real-time tracking of pathogen evolution},
journal = {Bioinform.},
volume = {34},
number = {23},
pages = {4121--4123},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty407},
doi = {10.1093/BIOINFORMATICS/BTY407},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HadfieldMBHPCSB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HakkinenAFZKLCG18,
author = {Antti H{\"{a}}kkinen and
Amjad Alkodsi and
Chiara Facciotto and
Kaiyang Zhang and
Katja Kaipio and
Sirpa Lepp{\"{a}} and
Olli Carp{\'{e}}n and
Seija Gr{\'{e}}nman and
Johanna Hynninen and
Sakari Hietanen and
Rainer Lehtonen and
Sampsa Hautaniemi},
title = {Identifying differentially methylated sites in samples with varying
tumor purity},
journal = {Bioinform.},
volume = {34},
number = {18},
pages = {3078--3085},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty310},
doi = {10.1093/BIOINFORMATICS/BTY310},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HakkinenAFZKLCG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HanL0W18,
author = {Renmin Han and
Yu Li and
Xin Gao and
Sheng Wang},
title = {An accurate and rapid continuous wavelet dynamic time warping algorithm
for end-to-end mapping in ultra-long nanopore sequencing},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i722--i731},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty555},
doi = {10.1093/BIOINFORMATICS/BTY555},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HanL0W18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HanMBGSKAA18,
author = {Lichy Han and
Mateusz Maciejewski and
Christoph Brockel and
William Gordon and
Scott B. Snapper and
Joshua R. Korzenik and
Lovisa Afzelius and
Russ B. Altman},
title = {A probabilistic pathway score {(PROPS)} for classification with applications
to inflammatory bowel disease},
journal = {Bioinform.},
volume = {34},
number = {6},
pages = {985--993},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx651},
doi = {10.1093/BIOINFORMATICS/BTX651},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HanMBGSKAA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HanZG18,
author = {Renmin Han and
Fa Zhang and
Xin Gao},
title = {A fast fiducial marker tracking model for fully automatic alignment
in electron tomography},
journal = {Bioinform.},
volume = {34},
number = {5},
pages = {853--863},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx653},
doi = {10.1093/BIOINFORMATICS/BTX653},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HanZG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HansonPLYZ18,
author = {Jack Hanson and
Kuldip K. Paliwal and
Thomas Litfin and
Yuedong Yang and
Yaoqi Zhou},
title = {Accurate prediction of protein contact maps by coupling residual two-dimensional
bidirectional long short-term memory with convolutional neural networks},
journal = {Bioinform.},
volume = {34},
number = {23},
pages = {4039--4045},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty481},
doi = {10.1093/BIOINFORMATICS/BTY481},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HansonPLYZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HaoYNAKBBP18,
author = {Yuhan Hao and
Liying Yang and
Antonio Galvao Neto and
Milan R. Amin and
Dervla Kelly and
Stuart M. Brown and
Ryan C. Branski and
Zhiheng Pei},
title = {HPViewer: sensitive and specific genotyping of human papillomavirus
in metagenomic {DNA}},
journal = {Bioinform.},
volume = {34},
number = {12},
pages = {1986--1995},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty037},
doi = {10.1093/BIOINFORMATICS/BTY037},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HaoYNAKBBP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HarringtonRE18,
author = {Kyle I. S. Harrington and
Curtis T. Rueden and
Kevin W. Eliceiri},
title = {FunImageJ: a Lisp framework for scientific image processing},
journal = {Bioinform.},
volume = {34},
number = {5},
pages = {899--900},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx710},
doi = {10.1093/BIOINFORMATICS/BTX710},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HarringtonRE18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HarrisonCZ18,
author = {Katherine J. Harrison and
Val{\'{e}}rie de Cr{\'{e}}cy{-}Lagard and
R{\'{e}}mi Zallot},
title = {Gene Graphics: a genomic neighborhood data visualization web application},
journal = {Bioinform.},
volume = {34},
number = {8},
pages = {1406--1408},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx793},
doi = {10.1093/BIOINFORMATICS/BTX793},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HarrisonCZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HashemifarNKX18,
author = {Somaye Hashemifar and
Behnam Neyshabur and
Aly A. Khan and
Jinbo Xu},
title = {Predicting protein-protein interactions through sequence-based deep
learning},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i802--i810},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty573},
doi = {10.1093/BIOINFORMATICS/BTY573},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HashemifarNKX18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HatzigeorgiouBB18,
author = {Artemis G. Hatzigeorgiou and
Pantelis G. Bagos and
Panayiotis V. Benos and
Christoforos Nikolaou and
Yves Moreau and
Ioannis Kavakiotis},
title = {{ECCB} 2018: The 17th European Conference on Computational Biology},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i595--i598},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty740},
doi = {10.1093/BIOINFORMATICS/BTY740},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HatzigeorgiouBB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HayesM18,
author = {Wayne B. Hayes and
Nil Mamano},
title = {{SANA} NetGO: a combinatorial approach to using Gene Ontology {(GO)}
terms to score network alignments},
journal = {Bioinform.},
volume = {34},
number = {8},
pages = {1345--1352},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx716},
doi = {10.1093/BIOINFORMATICS/BTX716},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HayesM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeFB18,
author = {Xiao He and
Lukas Folkman and
Karsten M. Borgwardt},
title = {Kernelized rank learning for personalized drug recommendation},
journal = {Bioinform.},
volume = {34},
number = {16},
pages = {2808--2816},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty132},
doi = {10.1093/BIOINFORMATICS/BTY132},
timestamp = {Wed, 25 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HeFB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HealBWTW18,
author = {Jack W. Heal and
Gail J. Bartlett and
Christopher W. Wood and
Andrew R. Thomson and
Derek N. Woolfson},
title = {Applying graph theory to protein structures: an Atlas of coiled coils},
journal = {Bioinform.},
volume = {34},
number = {19},
pages = {3316--3323},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty347},
doi = {10.1093/BIOINFORMATICS/BTY347},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HealBWTW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeoF18,
author = {Lim Heo and
Michael Feig},
title = {{PREFMD:} a web server for protein structure refinement via molecular
dynamics simulations},
journal = {Bioinform.},
volume = {34},
number = {6},
pages = {1063--1065},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx726},
doi = {10.1093/BIOINFORMATICS/BTX726},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HeoF18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HerW18,
author = {Hsuan{-}Lin Her and
Yu{-}Wei Wu},
title = {A pan-genome-based machine learning approach for predicting antimicrobial
resistance activities of the Escherichia coli strains},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i89--i95},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty276},
doi = {10.1093/BIOINFORMATICS/BTY276},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HerW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Hernandez-Ferrer18,
author = {Carles Hernandez{-}Ferrer and
Juan R. Gonz{\'{a}}lez},
title = {CTDquerier: a bioconductor {R} package for Comparative Toxicogenomics
DatabaseTM data extraction, visualization and enrichment of environmental
and toxicological studies},
journal = {Bioinform.},
volume = {34},
number = {18},
pages = {3235--3237},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty326},
doi = {10.1093/BIOINFORMATICS/BTY326},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Hernandez-Ferrer18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HinshawLGH18,
author = {Samuel J. Hinshaw and
Amy H. Y. Lee and
Erin E. Gill and
Robert E. W. Hancock},
title = {MetaBridge: enabling network-based integrative analysis via direct
protein interactors of metabolites},
journal = {Bioinform.},
volume = {34},
number = {18},
pages = {3225--3227},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty331},
doi = {10.1093/BIOINFORMATICS/BTY331},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HinshawLGH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HoffmannFVMSA18,
author = {Anne Hoffmann and
J{\"{o}}rg Fallmann and
Elisa Vilardo and
Mario M{\"{o}}rl and
Peter F. Stadler and
Fabian Amman},
title = {Accurate mapping of tRNA reads},
journal = {Bioinform.},
volume = {34},
number = {7},
pages = {1116--1124},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx756},
doi = {10.1093/BIOINFORMATICS/BTX756},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HoffmannFVMSA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HoffmannFVMSA18a,
author = {Anne Hoffmann and
J{\"{o}}rg Fallmann and
Elisa Vilardo and
Mario M{\"{o}}rl and
Peter F. Stadler and
Fabian Amman},
title = {Accurate mapping of tRNA reads},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {2339},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty118},
doi = {10.1093/BIOINFORMATICS/BTY118},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HoffmannFVMSA18a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HokszaGOS18,
author = {David Hoksza and
Piotr Gawron and
Marek Ostaszewski and
Reinhard Schneider},
title = {MolArt: a molecular structure annotation and visualization tool},
journal = {Bioinform.},
volume = {34},
number = {23},
pages = {4127--4128},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty489},
doi = {10.1093/BIOINFORMATICS/BTY489},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HokszaGOS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HollanderHHN18,
author = {Markus Hollander and
Mohamed Hamed and
Volkhard Helms and
Kerstin Neininger},
title = {MutaNET: a tool for automated analysis of genomic mutations in gene
regulatory networks},
journal = {Bioinform.},
volume = {34},
number = {5},
pages = {864--866},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx687},
doi = {10.1093/BIOINFORMATICS/BTX687},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HollanderHHN18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HornakovaLVS18,
author = {Andrea Horn{\'{a}}kov{\'{a}} and
Markus List and
Jilles Vreeken and
Marcel H. Schulz},
title = {{JAMI:} fast computation of conditional mutual information for ceRNA
network analysis},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {3050--3051},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty221},
doi = {10.1093/BIOINFORMATICS/BTY221},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HornakovaLVS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HouAC18,
author = {Jie Hou and
Badri Adhikari and
Jianlin Cheng},
title = {DeepSF: deep convolutional neural network for mapping protein sequences
to folds},
journal = {Bioinform.},
volume = {34},
number = {8},
pages = {1295--1303},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx780},
doi = {10.1093/BIOINFORMATICS/BTX780},
timestamp = {Tue, 27 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HouAC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HoytKE18,
author = {Charles Tapley Hoyt and
Andrej Konotopez and
Christian Ebeling},
title = {PyBEL: a computational framework for Biological Expression Language},
journal = {Bioinform.},
volume = {34},
number = {4},
pages = {703--704},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx660},
doi = {10.1093/BIOINFORMATICS/BTX660},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HoytKE18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuLHHWZRL18,
author = {Yu Hu and
Jennie Lin and
Jian Hu and
Gang Hu and
Kui Wang and
Hanrui Zhang and
Muredach P. Reilly and
Mingyao Li},
title = {PennDiff: detecting differential alternative splicing and transcription
by {RNA} sequencing},
journal = {Bioinform.},
volume = {34},
number = {14},
pages = {2384--2391},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty097},
doi = {10.1093/BIOINFORMATICS/BTY097},
timestamp = {Tue, 02 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuLHHWZRL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuLYZ18,
author = {Jun Hu and
Zi Liu and
Dong{-}Jun Yu and
Yang Zhang},
title = {LS-align: an atom-level, flexible ligand structural alignment algorithm
for high-throughput virtual screening},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {2209--2218},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty081},
doi = {10.1093/BIOINFORMATICS/BTY081},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuLYZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangCY18,
author = {Yu{-}An Huang and
Keith C. C. Chan and
Zhu{-}Hong You},
title = {Constructing prediction models from expression profiles for large
scale lncRNA-miRNA interaction profiling},
journal = {Bioinform.},
volume = {34},
number = {5},
pages = {812--819},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx672},
doi = {10.1093/BIOINFORMATICS/BTX672},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuangCY18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangERMYKBPH18,
author = {Xiayuan Huang and
Robert C. Elston and
Guilherme J. M. Rosa and
John Mayer and
Zhan Ye and
Terrie E. Kitchner and
Murray H. Brilliant and
David Page and
Scott J. Hebbring},
title = {Applying family analyses to electronic health records to facilitate
genetic research},
journal = {Bioinform.},
volume = {34},
number = {4},
pages = {635--642},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx569},
doi = {10.1093/BIOINFORMATICS/BTX569},
timestamp = {Tue, 16 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuangERMYKBPH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangJCI18,
author = {Justin K. Huang and
Tongqiu Jia and
Daniel E. Carlin and
Trey Ideker},
title = {pyNBS: a Python implementation for network-based stratification of
tumor mutations},
journal = {Bioinform.},
volume = {34},
number = {16},
pages = {2859--2861},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty186},
doi = {10.1093/BIOINFORMATICS/BTY186},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuangJCI18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangKS18,
author = {Liren Huang and
Jan Kr{\"{u}}ger and
Alexander Sczyrba},
title = {Analyzing large scale genomic data on the cloud with Sparkhit},
journal = {Bioinform.},
volume = {34},
number = {9},
pages = {1457--1465},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx808},
doi = {10.1093/BIOINFORMATICS/BTX808},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuangKS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangLX18,
author = {Yangyu Huang and
Haotian Li and
Yi Xiao},
title = {3dRPC: a web server for 3D RNA-protein structure prediction},
journal = {Bioinform.},
volume = {34},
number = {7},
pages = {1238--1240},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx742},
doi = {10.1093/BIOINFORMATICS/BTX742},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuangLX18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangWP18,
author = {Xiaoqing Huang and
Damian W{\'{o}}jtowicz and
Teresa M. Przytycka},
title = {Detecting presence of mutational signatures in cancer with confidence},
journal = {Bioinform.},
volume = {34},
number = {2},
pages = {330--337},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx604},
doi = {10.1093/BIOINFORMATICS/BTX604},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuangWP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangZLTX18,
author = {Xiaosan Huang and
Shaoling Zhang and
Kongqing Li and
Jyothi Thimmapuram and
Shaojun Xie},
title = {ViewBS: a powerful toolkit for visualization of high-throughput bisulfite
sequencing data},
journal = {Bioinform.},
volume = {34},
number = {4},
pages = {708--709},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx633},
doi = {10.1093/BIOINFORMATICS/BTX633},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuangZLTX18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IcazattiMVSV18,
author = {Alejandro A. Icazatti and
Osvaldo A. Martin and
Myriam Villegas and
Igal Szleifer and
Jorge A. Vila},
title = {13Check{\_}RNA: a tool to evaluate 13C chemical shift assignments
of {RNA}},
journal = {Bioinform.},
volume = {34},
number = {23},
pages = {4124--4126},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty470},
doi = {10.1093/BIOINFORMATICS/BTY470},
timestamp = {Tue, 29 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/IcazattiMVSV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ImbertVGALGVV18,
author = {Alyssa Imbert and
Armand Valsesia and
Caroline Le Gall and
Claudia Armenise and
Gregory Lefebvre and
Pierre{-}Antoine Gourraud and
Nathalie Viguerie and
Nathalie Villa{-}Vialaneix},
title = {Multiple hot-deck imputation for network inference from {RNA} sequencing
data},
journal = {Bioinform.},
volume = {34},
number = {10},
pages = {1726--1732},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx819},
doi = {10.1093/BIOINFORMATICS/BTX819},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ImbertVGALGVV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IqbalH18,
author = {Sumaiya Iqbal and
Md. Tamjidul Hoque},
title = {PBRpredict-Suite: a suite of models to predict peptide-recognition
domain residues from protein sequence},
journal = {Bioinform.},
volume = {34},
number = {19},
pages = {3289--3299},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty352},
doi = {10.1093/BIOINFORMATICS/BTY352},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/IqbalH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IrrgangHK18,
author = {M. Eric Irrgang and
Jennifer M. Hays and
Peter M. Kasson},
title = {gmxapi: a high-level interface for advanced control and extension
of molecular dynamics simulations},
journal = {Bioinform.},
volume = {34},
number = {22},
pages = {3945--3947},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty484},
doi = {10.1093/BIOINFORMATICS/BTY484},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/IrrgangHK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IslamHKB18,
author = {S. M. Ashiqul Islam and
Benjamin J. Heil and
Christopher Michel Kearney and
Erich J. Baker},
title = {Protein classification using modified n-grams and skip-grams},
journal = {Bioinform.},
volume = {34},
number = {9},
pages = {1481--1487},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx823},
doi = {10.1093/BIOINFORMATICS/BTX823},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/IslamHKB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ItersonCHCH18,
author = {Maarten van Iterson and
Davy Cats and
Paul Hop and
BIOS Consortium and
Bastiaan T. Heijmans},
title = {omicsPrint: detection of data linkage errors in multiple omics studies},
journal = {Bioinform.},
volume = {34},
number = {12},
pages = {2142--2143},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty062},
doi = {10.1093/BIOINFORMATICS/BTY062},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ItersonCHCH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IvakhnoRCTC18,
author = {Sergii Ivakhno and
Eric Roller and
Camilla Colombo and
Philip Tedder and
Anthony J. Cox},
title = {Canvas {SPW:} calling de novo copy number variants in pedigrees},
journal = {Bioinform.},
volume = {34},
number = {3},
pages = {516--518},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx618},
doi = {10.1093/BIOINFORMATICS/BTX618},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/IvakhnoRCTC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IvanovRRGMJDCMK18,
author = {Andrei A. Ivanov and
Brian Revennaugh and
Lauren Rusnak and
Valentina Gonzalez{-}Pecchi and
Xiulei Mo and
Margaret A. Johns and
Yuhong Du and
Lee A. D. Cooper and
Carlos Sanchez Moreno and
Fadlo R. Khuri and
Haian Fu},
title = {The OncoPPi Portal: an integrative resource to explore and prioritize
protein-protein interactions for cancer target discovery},
journal = {Bioinform.},
volume = {34},
number = {7},
pages = {1183--1191},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx743},
doi = {10.1093/BIOINFORMATICS/BTX743},
timestamp = {Sun, 01 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/IvanovRRGMJDCMK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JabbariWMW18,
author = {Hosna Jabbari and
Ian Wark and
Carlo Montemagno and
Sebastian Will},
title = {Knotty: efficient and accurate prediction of complex {RNA} pseudoknot
structures},
journal = {Bioinform.},
volume = {34},
number = {22},
pages = {3849--3856},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty420},
doi = {10.1093/BIOINFORMATICS/BTY420},
timestamp = {Mon, 01 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JabbariWMW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JainKDPA18,
author = {Chirag Jain and
Sergey Koren and
Alexander T. Dilthey and
Adam M. Phillippy and
Srinivas Aluru},
title = {A fast adaptive algorithm for computing whole-genome homology maps},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i748--i756},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty597},
doi = {10.1093/BIOINFORMATICS/BTY597},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JainKDPA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JaliliMMM18,
author = {Vahid Jalili and
Matteo Matteucci and
Marco Masseroli and
Marco J. Morelli},
title = {Using combined evidence from replicates to evaluate ChIP-seq peaks},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {2338},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty119},
doi = {10.1093/BIOINFORMATICS/BTY119},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JaliliMMM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JangL18,
author = {Ho Jang and
Hyunju Lee},
title = {Identification of cancer driver genes in focal genomic aberrations
from whole-exome sequencing data},
journal = {Bioinform.},
volume = {34},
number = {3},
pages = {519--521},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx620},
doi = {10.1093/BIOINFORMATICS/BTX620},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JangL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JarmolinskaKDS18,
author = {Aleksandra I. Jarmolinska and
Michal Kadlof and
Pawel Dabrowski{-}Tumanski and
Joanna I. Sulkowska},
title = {GapRepairer: a server to model a structural gap and validate it using
topological analysis},
journal = {Bioinform.},
volume = {34},
number = {19},
pages = {3300--3307},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty334},
doi = {10.1093/BIOINFORMATICS/BTY334},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JarmolinskaKDS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JessaK18,
author = {Selin Jessa and
Claudia L. Kleinman},
title = {chromswitch: a flexible method to detect chromatin state switches},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {2286--2288},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty075},
doi = {10.1093/BIOINFORMATICS/BTY075},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JessaK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JiCYZYSPW18,
author = {Guoli Ji and
Moliang Chen and
Wenbin Ye and
Sheng Zhu and
Congting Ye and
Yaru Su and
Haonan Peng and
Xiaohui Wu},
title = {{TSAPA:} identification of tissue-specific alternative polyadenylation
sites in plants},
journal = {Bioinform.},
volume = {34},
number = {12},
pages = {2123--2125},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty044},
doi = {10.1093/BIOINFORMATICS/BTY044},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JiCYZYSPW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JiSZB18,
author = {Changge Ji and
Fredrik Svensson and
Azedine Zoufir and
Andreas Bender},
title = {eMolTox: prediction of molecular toxicity with confidence},
journal = {Bioinform.},
volume = {34},
number = {14},
pages = {2508--2509},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty135},
doi = {10.1093/BIOINFORMATICS/BTY135},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JiSZB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JiaZZ18,
author = {Cangzhi Jia and
Yun Zuo and
Quan Zou},
title = {O-GlcNAcPRED-II: an integrated classification algorithm for identifying
O-GlcNAcylation sites based on fuzzy undersampling and a K-means {PCA}
oversampling technique},
journal = {Bioinform.},
volume = {34},
number = {12},
pages = {2029--2036},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty039},
doi = {10.1093/BIOINFORMATICS/BTY039},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JiaZZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JiangSHC18,
author = {Hao Jiang and
Lydia L. Sohn and
Haiyan Huang and
Luonan Chen},
title = {Single cell clustering based on cell-pair differentiability correlation
and variance analysis},
journal = {Bioinform.},
volume = {34},
number = {21},
pages = {3684--3694},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty390},
doi = {10.1093/BIOINFORMATICS/BTY390},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JiangSHC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Jimenez-GarciaR18,
author = {Brian Jim{\'{e}}nez{-}Garc{\'{\i}}a and
Jorge Roel{-}Touris and
Miguel Romero{-}Durana and
Miquel Vidal and
Daniel Jim{\'{e}}nez{-}Gonz{\'{a}}lez and
Juan Fern{\'{a}}ndez{-}Recio},
title = {LightDock: a new multi-scale approach to protein-protein docking},
journal = {Bioinform.},
volume = {34},
number = {1},
pages = {49--55},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx555},
doi = {10.1093/BIOINFORMATICS/BTX555},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Jimenez-GarciaR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JimenezGN18,
author = {Beatriz Garc{\'{\i}}a Jim{\'{e}}nez and
Jos{\'{e}} Luis Garc{\'{\i}}a l{\'{o}}pez and
Juan Nogales},
title = {{FLYCOP:} metabolic modeling-based analysis and engineering microbial
communities},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i954--i963},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty561},
doi = {10.1093/BIOINFORMATICS/BTY561},
timestamp = {Sat, 19 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JimenezGN18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JimenezRW18,
author = {Beatriz Garc{\'{\i}}a Jim{\'{e}}nez and
Tom{\'{a}}s de la Rosa and
Mark D. Wilkinson},
title = {MDPbiome: microbiome engineering through prescriptive perturbations},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i838--i847},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty562},
doi = {10.1093/BIOINFORMATICS/BTY562},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JimenezRW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Jin0Y18,
author = {Zhuxuan Jin and
Jian Kang and
Tianwei Yu},
title = {Missing value imputation for {LC-MS} metabolomics data by incorporating
metabolic network and adduct ion relations},
journal = {Bioinform.},
volume = {34},
number = {9},
pages = {1555--1561},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx816},
doi = {10.1093/BIOINFORMATICS/BTX816},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Jin0Y18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JinMPN18,
author = {Suoqin Jin and
Adam L. Maclean and
Tao Peng and
Qing Nie},
title = {scEpath: energy landscape-based inference of transition probabilities
and cellular trajectories from single-cell transcriptomic data},
journal = {Bioinform.},
volume = {34},
number = {12},
pages = {2077--2086},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty058},
doi = {10.1093/BIOINFORMATICS/BTY058},
timestamp = {Thu, 23 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JinMPN18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JohnsonSPS18,
author = {Ruth Johnson and
Huwenbo Shi and
Bogdan Pasaniuc and
Sriram Sankararaman},
title = {A unifying framework for joint trait analysis under a non-infinitesimal
model},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i195--i201},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty254},
doi = {10.1093/BIOINFORMATICS/BTY254},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JohnsonSPS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JokinenHL18,
author = {Emmi Jokinen and
Markus Heinonen and
Harri L{\"{a}}hdesm{\"{a}}ki},
title = {mGPfusion: predicting protein stability changes with Gaussian process
kernel learning and data fusion},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i274--i283},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty238},
doi = {10.1093/BIOINFORMATICS/BTY238},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JokinenHL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JonesK18,
author = {David T. Jones and
Shaun M. Kandathil},
title = {High precision in protein contact prediction using fully convolutional
neural networks and minimal sequence features},
journal = {Bioinform.},
volume = {34},
number = {19},
pages = {3308--3315},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty341},
doi = {10.1093/BIOINFORMATICS/BTY341},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JonesK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JuliusdottirBRM18,
author = {Thorhildur Juliusdottir and
Karina Banasik and
Neil R. Robertson and
Richard Mott and
Mark I. McCarthy},
title = {Toppar: an interactive browser for viewing association study results},
journal = {Bioinform.},
volume = {34},
number = {11},
pages = {1922--1924},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx840},
doi = {10.1093/BIOINFORMATICS/BTX840},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JuliusdottirBRM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JungKJY18,
author = {Jaehee Jung and
Jong Im Kim and
Young{-}Sik Jeong and
Gangman Yi},
title = {{AGORA:} organellar genome annotation from the amino acid and nucleotide
references},
journal = {Bioinform.},
volume = {34},
number = {15},
pages = {2661--2663},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty196},
doi = {10.1093/BIOINFORMATICS/BTY196},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JungKJY18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JurcikBBMFDKBSS18,
author = {Adam Jurc{\'{\i}}k and
David Bednar and
Jan Byska and
S{\'{e}}rgio M. Marques and
Katar{\'{\i}}na Furmanov{\'{a}} and
Lukas Daniel and
Piia Kokkonen and
Jan Brezovsky and
Ondrej Strnad and
Jan Stourac and
Anton{\'{\i}}n Pavelka and
Martin Manak and
Jir{\'{\i}} Damborsk{\'{y}} and
Barbora Kozl{\'{\i}}kov{\'{a}}},
title = {{CAVER} Analyst 2.0: analysis and visualization of channels and tunnels
in protein structures and molecular dynamics trajectories},
journal = {Bioinform.},
volume = {34},
number = {20},
pages = {3586--3588},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty386},
doi = {10.1093/BIOINFORMATICS/BTY386},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JurcikBBMFDKBSS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JurgesDE18,
author = {Christopher J{\"{u}}rges and
Lars D{\"{o}}lken and
Florian Erhard},
title = {Dissecting newly transcribed and old {RNA} using {GRAND-SLAM}},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i218--i226},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty256},
doi = {10.1093/BIOINFORMATICS/BTY256},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JurgesDE18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Kaczor-Urbanowicz18,
author = {Karolina Elzbieta Kaczor{-}Urbanowicz and
Yong Kim and
Feng Li and
Timur Galeev and
Robert R. Kitchen and
Mark Gerstein and
Kikuye Koyano and
Sung{-}Hee Jeong and
Xiaoyan Wang and
David Elashoff and
So Young Kang and
Su Mi Kim and
Kyoung Kim and
Sung Kim and
David Chia and
Xinshu Xiao and
Joel S. Rozowsky and
David T. W. Wong},
title = {Novel approaches for bioinformatic analysis of salivary {RNA} sequencing
data for development},
journal = {Bioinform.},
volume = {34},
number = {1},
pages = {1--8},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx504},
doi = {10.1093/BIOINFORMATICS/BTX504},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Kaczor-Urbanowicz18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KaleAT18,
author = {Gulce Kale and
Erman Ayday and
{\"{O}}znur Tastan},
title = {A utility maximizing and privacy preserving approach for protecting
kinship in genomic databases},
journal = {Bioinform.},
volume = {34},
number = {2},
pages = {181--189},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx568},
doi = {10.1093/BIOINFORMATICS/BTX568},
timestamp = {Sat, 20 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KaleAT18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KaleckyC18,
author = {Karel Kalecky and
Young{-}Rae Cho},
title = {PrimAlign: PageRank-inspired Markovian alignment for large biological
networks},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i537--i546},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty288},
doi = {10.1093/BIOINFORMATICS/BTY288},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KaleckyC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KalitaMBWLP18,
author = {Cynthia A. Kalita and
Gregory A. Moyerbrailean and
Christopher Brown and
Xiaoquan Wen and
Francesca Luca and
Roger Pique{-}Regi},
title = {QuASAR-MPRA: accurate allele-specific analysis for massively parallel
reporter assays},
journal = {Bioinform.},
volume = {34},
number = {5},
pages = {787--794},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx598},
doi = {10.1093/BIOINFORMATICS/BTX598},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KalitaMBWLP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KanaiMO18,
author = {Masahiro Kanai and
Yuichi Maeda and
Yukinori Okada},
title = {Grimon: graphical interface to visualize multi-omics networks},
journal = {Bioinform.},
volume = {34},
number = {22},
pages = {3934--3936},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty488},
doi = {10.1093/BIOINFORMATICS/BTY488},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KanaiMO18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KangLMB18,
author = {Yiming Kang and
Hien{-}Haw Liow and
Ezekiel J. Maier and
Michael R. Brent},
title = {NetProphet 2.0: mapping transcription factor networks by exploiting
scalable data resources},
journal = {Bioinform.},
volume = {34},
number = {2},
pages = {249--257},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx563},
doi = {10.1093/BIOINFORMATICS/BTX563},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KangLMB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KapaevT18,
author = {Roman R. Kapaev and
Philip V. Toukach},
title = {{GRASS:} semi-automated NMR-based structure elucidation of saccharides},
journal = {Bioinform.},
volume = {34},
number = {6},
pages = {957--963},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx696},
doi = {10.1093/BIOINFORMATICS/BTX696},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KapaevT18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KapouraniS18,
author = {Chantriolnt{-}Andreas Kapourani and
Guido Sanguinetti},
title = {BPRMeth: a flexible Bioconductor package for modelling methylation
profiles},
journal = {Bioinform.},
volume = {34},
number = {14},
pages = {2485--2486},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty129},
doi = {10.1093/BIOINFORMATICS/BTY129},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KapouraniS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KarimiS18,
author = {Mostafa Karimi and
Yang Shen},
title = {iCFN: an efficient exact algorithm for multistate protein design},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i811--i820},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty564},
doi = {10.1093/BIOINFORMATICS/BTY564},
timestamp = {Fri, 01 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KarimiS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KartasaloLVVNR18,
author = {Kimmo Kartasalo and
Leena Latonen and
Jorma Vihinen and
Tapio Visakorpi and
Matti Nykter and
Pekka Ruusuvuori},
title = {Comparative analysis of tissue reconstruction algorithms for 3D histology},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {3013--3021},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty210},
doi = {10.1093/BIOINFORMATICS/BTY210},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KartasaloLVVNR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KaurS18,
author = {Gurmeet Kaur and
Srikrishna Subramanian},
title = {Evolutionary relationship between the cysteine and histidine rich
domains (CHORDs) and Btk-type zinc fingers},
journal = {Bioinform.},
volume = {34},
number = {12},
pages = {1981--1985},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty041},
doi = {10.1093/BIOINFORMATICS/BTY041},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KaurS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KedzierskaGCKRK18,
author = {Katarzyna Z. Kedzierska and
Livia Gerber and
Daniele Cagnazzi and
Michael Kr{\"{u}}tzen and
Aakrosh Ratan and
Logan Kistler},
title = {SONiCS: {PCR} stutter noise correction in genome-scale microsatellites},
journal = {Bioinform.},
volume = {34},
number = {23},
pages = {4115--4117},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty485},
doi = {10.1093/BIOINFORMATICS/BTY485},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KedzierskaGCKRK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KeelDM18,
author = {Brittney N. Keel and
Bo Deng and
Etsuko N. Moriyama},
title = {MOCASSIN-prot: a multi-objective clustering approach for protein similarity
networks},
journal = {Bioinform.},
volume = {34},
number = {8},
pages = {1270--1277},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx755},
doi = {10.1093/BIOINFORMATICS/BTX755},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KeelDM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KehlSKSWGLDSKTG18,
author = {Tim Kehl and
Lara Schneider and
Kathrin Kattler and
Daniel St{\"{o}}ckel and
Jenny Wegert and
Nico Gerstner and
Nicole Ludwig and
Ute Distler and
Markus Schick and
Ulrich Keller and
Stefan Tenzer and
Manfred Gessler and
J{\"{o}}rn Walter and
Andreas Keller and
Norbert M. Graf and
Eckart Meese and
Hans{-}Peter Lenhof},
title = {{REGGAE:} a novel approach for the identification of key transcriptional
regulators},
journal = {Bioinform.},
volume = {34},
number = {20},
pages = {3503--3510},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty372},
doi = {10.1093/BIOINFORMATICS/BTY372},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KehlSKSWGLDSKTG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KhanM18,
author = {Aziz Khan and
Anthony Mathelier},
title = {{JASPAR} RESTful {API:} accessing {JASPAR} data from any programming
language},
journal = {Bioinform.},
volume = {34},
number = {9},
pages = {1612--1614},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx804},
doi = {10.1093/BIOINFORMATICS/BTX804},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KhanM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KhanMVWCB18,
author = {Hamza Khan and
Hamid Mohamadi and
Benjamin P. Vandervalk and
Ren{\'{e}} L. Warren and
Justin Chu and
Inan{\c{c}} Birol},
title = {ChopStitch: exon annotation and splice graph construction using transcriptome
assembly and whole genome sequencing data},
journal = {Bioinform.},
volume = {34},
number = {10},
pages = {1697--1704},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx839},
doi = {10.1093/BIOINFORMATICS/BTX839},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KhanMVWCB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KhanSLCTGDT18,
author = {Waqasuddin Khan and
Ganapathi Varma Saripella and
Thomas Ludwig and
Tania Cuppens and
Florian Thibord and
Emmanuelle G{\'{e}}nin and
Jean{-}Francois Deleuze and
David{-}Alexandre Tr{\'{e}}gou{\"{e}}t},
title = {{MACARON:} a python framework to identify and re-annotate multi-base
affected codons in whole genome/exome sequence data},
journal = {Bioinform.},
volume = {34},
number = {19},
pages = {3396--3398},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty382},
doi = {10.1093/BIOINFORMATICS/BTY382},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KhanSLCTGDT18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KhuranaRKCBM18,
author = {Sameer Khurana and
Reda Rawi and
Khalid Kunji and
Gwo{-}Yu Chuang and
Halima Bensmail and
Raghvendra Mall},
title = {DeepSol: a deep learning framework for sequence-based protein solubility
prediction},
journal = {Bioinform.},
volume = {34},
number = {15},
pages = {2605--2613},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty166},
doi = {10.1093/BIOINFORMATICS/BTY166},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KhuranaRKCBM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimCKBY18,
author = {Sun{-}Ah Kim and
Chang{-}Sung Cho and
Suh{-}Ryung Kim and
Shelley B. Bull and
Yun Joo Yoo},
title = {A new haplotype block detection method for dense genome sequencing
data based on interval graph modeling of clusters of highly correlated
SNPs},
journal = {Bioinform.},
volume = {34},
number = {3},
pages = {388--397},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx609},
doi = {10.1093/BIOINFORMATICS/BTX609},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimCKBY18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimKHPT18,
author = {Sunghwan Kim and
Dongwan D. Kang and
Zhiguang Huo and
Yongseok Park and
George C. Tseng},
title = {Meta-analytic principal component analysis in integrative omics application},
journal = {Bioinform.},
volume = {34},
number = {8},
pages = {1321--1328},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx765},
doi = {10.1093/BIOINFORMATICS/BTX765},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimKHPT18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimKKK18,
author = {Minjeong Kim and
Jai{-}Hoon Kim and
Kangseok Kim and
Sunshin Kim},
title = {Cost-effective and accurate method of measuring fetal fraction using
{SNP} imputation},
journal = {Bioinform.},
volume = {34},
number = {7},
pages = {1086--1091},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx728},
doi = {10.1093/BIOINFORMATICS/BTX728},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimKKK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimKS18,
author = {Yoojoong Kim and
Yeong Seon Kang and
Junhee Seok},
title = {{GAIT:} Gene expression Analysis for Interval Time},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {2305--2307},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty111},
doi = {10.1093/BIOINFORMATICS/BTY111},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimKS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimYLZC18,
author = {Hang J. Kim and
Zhenning Yu and
Andrew Lawson and
Hongyu Zhao and
Dongjun Chung},
title = {Improving {SNP} prioritization and pleiotropic architecture estimation
by incorporating prior knowledge using graph-GPA},
journal = {Bioinform.},
volume = {34},
number = {12},
pages = {2139--2141},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty061},
doi = {10.1093/BIOINFORMATICS/BTY061},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimYLZC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KingFRMSP18,
author = {Brendan King and
Terry Farrah and
Matthew A. Richards and
Michael B. Mundy and
Evangelos Simeonidis and
Nathan D. Price},
title = {ProbAnnoWeb and ProbAnnoPy: probabilistic annotation and gap-filling
of metabolic reconstructions},
journal = {Bioinform.},
volume = {34},
number = {9},
pages = {1594--1596},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx796},
doi = {10.1093/BIOINFORMATICS/BTX796},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KingFRMSP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KleinCZ18,
author = {Joshua Klein and
Luis Carvalho and
Joseph Zaia},
title = {Application of network smoothing to glycan {LC-MS} profiling},
journal = {Bioinform.},
volume = {34},
number = {20},
pages = {3511--3518},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty397},
doi = {10.1093/BIOINFORMATICS/BTY397},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KleinCZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KlingerRH18,
author = {Emmanuel Klinger and
Dennis Rickert and
Jan Hasenauer},
title = {pyABC: distributed, likelihood-free inference},
journal = {Bioinform.},
volume = {34},
number = {20},
pages = {3591--3593},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty361},
doi = {10.1093/BIOINFORMATICS/BTY361},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KlingerRH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KlukowskiAZDGW18,
author = {Piotr Klukowski and
Michal Augoff and
Maciej Zieba and
Maciej Drwal and
Adam Gonczarek and
Michal J. Walczak},
title = {NMRNet: a deep learning approach to automated peak picking of protein
{NMR} spectra},
journal = {Bioinform.},
volume = {34},
number = {15},
pages = {2590--2597},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty134},
doi = {10.1093/BIOINFORMATICS/BTY134},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KlukowskiAZDGW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KnappAZWMD18,
author = {Bernhard Knapp and
Marta Alcal{\'{a}} and
Hao Zhang and
Clare E. West and
P. Anton van der Merwe and
Charlotte M. Deane},
title = {pyHVis3D: visualising molecular simulation deduced H-bond networks
in 3D: application to T-cell receptor interactions},
journal = {Bioinform.},
volume = {34},
number = {11},
pages = {1941--1943},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx842},
doi = {10.1093/BIOINFORMATICS/BTX842},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KnappAZWMD18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KobayashiHNSGKF18,
author = {Naohiro Kobayashi and
Yoshikazu Hattori and
Takashi Nagata and
Shoko Shinya and
Peter G{\"{u}}ntert and
Chojiro Kojima and
Toshimichi Fujiwara},
title = {Noise peak filtering in multi-dimensional {NMR} spectra using convolutional
neural networks},
journal = {Bioinform.},
volume = {34},
number = {24},
pages = {4300--4301},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty581},
doi = {10.1093/BIOINFORMATICS/BTY581},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KobayashiHNSGKF18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KoehorstDSSSS18,
author = {Jasper J. Koehorst and
Jesse C. J. van Dam and
Edoardo Saccenti and
V{\'{\i}}tor A. P. Martins dos Santos and
Mar{\'{\i}}a Su{\'{a}}rez{-}Diez and
Peter J. Schaap},
title = {{SAPP:} functional genome annotation and analysis through a semantic
framework using {FAIR} principles},
journal = {Bioinform.},
volume = {34},
number = {8},
pages = {1401--1403},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx767},
doi = {10.1093/BIOINFORMATICS/BTX767},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KoehorstDSSSS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Kofler18,
author = {Robert Kofler},
title = {SimulaTE: simulating complex landscapes of transposable elements of
populations},
journal = {Bioinform.},
volume = {34},
number = {8},
pages = {1419--1420},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx772},
doi = {10.1093/BIOINFORMATICS/BTX772},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Kofler18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Kofler18a,
author = {Robert Kofler},
title = {SimulaTE: simulating complex landscapes of transposable elements of
populations},
journal = {Bioinform.},
volume = {34},
number = {8},
pages = {1439},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx832},
doi = {10.1093/BIOINFORMATICS/BTX832},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Kofler18a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KomarK18,
author = {P{\'{e}}ter K{\'{o}}m{\'{a}}r and
Deniz Kural},
title = {geck: trio-based comparative benchmarking of variant calls},
journal = {Bioinform.},
volume = {34},
number = {20},
pages = {3488--3495},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty415},
doi = {10.1093/BIOINFORMATICS/BTY415},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KomarK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KongY18,
author = {Yunchuan Kong and
Tianwei Yu},
title = {A graph-embedded deep feedforward network for disease outcome classification
and feature selection using gene expression data},
journal = {Bioinform.},
volume = {34},
number = {21},
pages = {3727--3737},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty429},
doi = {10.1093/BIOINFORMATICS/BTY429},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KongY18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KoressaarLKRAR18,
author = {Triinu Koressaar and
Maarja Lepamets and
Lauris Kaplinski and
Kairi Raime and
Reidar Andreson and
Maido Remm},
title = {Primer3{\_}masker: integrating masking of template sequence with primer
design software},
journal = {Bioinform.},
volume = {34},
number = {11},
pages = {1937--1938},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty036},
doi = {10.1093/BIOINFORMATICS/BTY036},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KoressaarLKRAR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KosterR18,
author = {Johannes K{\"{o}}ster and
Sven Rahmann},
title = {Snakemake - a scalable bioinformatics workflow engine},
journal = {Bioinform.},
volume = {34},
number = {20},
pages = {3600},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty350},
doi = {10.1093/BIOINFORMATICS/BTY350},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KosterR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KostersLSSKZHLF18,
author = {M. K{\"{o}}sters and
Johannes Leufken and
Stefan Schulze and
K. Sugimoto and
Joshua Klein and
R. P. Zahedi and
Michael Hippler and
S. A Leidel and
Christian Fufezan},
title = {pymzML v2.0: introducing a highly compressed and seekable gzip format},
journal = {Bioinform.},
volume = {34},
number = {14},
pages = {2513--2514},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty046},
doi = {10.1093/BIOINFORMATICS/BTY046},
timestamp = {Thu, 30 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KostersLSSKZHLF18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KrawczykDKDM18,
author = {Konrad Krawczyk and
Samuel Demharter and
Bernhard Knapp and
Charlotte M. Deane and
Peter Minary},
title = {In silico structural modeling of multiple epigenetic marks on {DNA}},
journal = {Bioinform.},
volume = {34},
number = {1},
pages = {41--48},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx516},
doi = {10.1093/BIOINFORMATICS/BTX516},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KrawczykDKDM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KressLPT18,
author = {Arnaud Kress and
Odile Lecompte and
Olivier Poch and
Julie Dawn Thompson},
title = {{PROBE:} analysis and visualization of protein block-level evolution},
journal = {Bioinform.},
volume = {34},
number = {19},
pages = {3390--3392},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty367},
doi = {10.1093/BIOINFORMATICS/BTY367},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KressLPT18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Kreutz18,
author = {Clemens Kreutz},
title = {An easy and efficient approach for testing identifiability},
journal = {Bioinform.},
volume = {34},
number = {11},
pages = {1913--1921},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty035},
doi = {10.1093/BIOINFORMATICS/BTY035},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Kreutz18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KrizanovicERS18,
author = {Kresimir Krizanovic and
Amina Echchiki and
Julien Roux and
Mile Sikic},
title = {Evaluation of tools for long read RNA-seq splice-aware alignment},
journal = {Bioinform.},
volume = {34},
number = {5},
pages = {748--754},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx668},
doi = {10.1093/BIOINFORMATICS/BTX668},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KrizanovicERS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KulandaisamyPST18,
author = {A. Kulandaisamy and
S. Binny Priya and
R. Sakthivel and
Svetlana Tarnovskaya and
Ilya Bizin and
Peter H{\"{o}}nigschmid and
Dmitrij Frishman and
M. Michael Gromiha},
title = {MutHTP: mutations in human transmembrane proteins},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {2325--2326},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty054},
doi = {10.1093/BIOINFORMATICS/BTY054},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KulandaisamyPST18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KulmanovKH18,
author = {Maxat Kulmanov and
Mohammad Asif Khan and
Robert Hoehndorf},
title = {DeepGO: predicting protein functions from sequence and interactions
using a deep ontology-aware classifier},
journal = {Bioinform.},
volume = {34},
number = {4},
pages = {660--668},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx624},
doi = {10.1093/BIOINFORMATICS/BTX624},
timestamp = {Wed, 13 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KulmanovKH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KulmanovSGH18,
author = {Maxat Kulmanov and
Paul N. Schofield and
Georgios V. Gkoutos and
Robert Hoehndorf},
title = {Ontology-based validation and identification of regulatory phenotypes},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i857--i865},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty605},
doi = {10.1093/BIOINFORMATICS/BTY605},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KulmanovSGH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KumarLAAMLLV18,
author = {Ajay Anand Kumar and
Lut Van Laer and
Maaike Alaerts and
Amin Ardeshirdavani and
Yves Moreau and
Kris Laukens and
Bart Loeys and
Geert Vandeweyer},
title = {pBRIT: gene prioritization by correlating functional and phenotypic
annotations through integrative data fusion},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {2254--2262},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty079},
doi = {10.1093/BIOINFORMATICS/BTY079},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KumarLAAMLLV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KunjiUNWS18,
author = {Khalid Kunji and
Ehsan Ullah and
Alejandro Q. Nato and
Ellen M. Wijsman and
Mohamad Saad},
title = {GIGI-Quick: a fast approach to impute missing genotypes in genome-wide
association family data},
journal = {Bioinform.},
volume = {34},
number = {9},
pages = {1591--1593},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx782},
doi = {10.1093/BIOINFORMATICS/BTX782},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KunjiUNWS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KuoT18,
author = {Tien{-}Chueh Kuo and
Yufeng Jane Tseng},
title = {LipidPedia: a comprehensive lipid knowledgebase},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {2982--2987},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty213},
doi = {10.1093/BIOINFORMATICS/BTY213},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KuoT18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KyeongCK18,
author = {Hyun{-}Ho Kyeong and
Yoonjoo Choi and
Hak{-}Sung Kim},
title = {GradDock: rapid simulation and tailored ranking functions for peptide-MHC
Class {I} docking},
journal = {Bioinform.},
volume = {34},
number = {3},
pages = {469--476},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx589},
doi = {10.1093/BIOINFORMATICS/BTX589},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KyeongCK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LaajalaMVA18,
author = {Teemu D. Laajala and
Mika Murtoj{\"{a}}rvi and
Arho Virkki and
Tero Aittokallio},
title = {ePCR: an R-package for survival and time-to-event prediction in advanced
prostate cancer, applied to real-world patient cohorts},
journal = {Bioinform.},
volume = {34},
number = {22},
pages = {3957--3959},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty477},
doi = {10.1093/BIOINFORMATICS/BTY477},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LaajalaMVA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LafondMS18,
author = {Manuel Lafond and
Mona Meghdari Miardan and
David Sankoff},
title = {Accurate prediction of orthologs in the presence of divergence after
duplication},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i366--i375},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty242},
doi = {10.1093/BIOINFORMATICS/BTY242},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LafondMS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LaguninRDFP18,
author = {Alexey Lagunin and
Anastasia V. Rudik and
Dmitry S. Druzhilovskiy and
Dmitry Filimonov and
Vladimir Poroikov},
title = {ROSC-Pred: web-service for rodent organ-specific carcinogenicity prediction},
journal = {Bioinform.},
volume = {34},
number = {4},
pages = {710--712},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx678},
doi = {10.1093/BIOINFORMATICS/BTX678},
timestamp = {Wed, 14 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LaguninRDFP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LandererCZG18,
author = {Cedric Landerer and
Alexander Cope and
Russell L. Zaretzki and
Michael A. Gilchrist},
title = {AnaCoDa: analyzing codon data with Bayesian mixture models},
journal = {Bioinform.},
volume = {34},
number = {14},
pages = {2496--2498},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty138},
doi = {10.1093/BIOINFORMATICS/BTY138},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LandererCZG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LaponogovSGMV18,
author = {Ivan Laponogov and
Noureddin Sadawi and
Dieter Galea and
Reza Mirnezami and
Kirill A. Veselkov},
title = {ChemDistiller: an engine for metabolite annotation in mass spectrometry},
journal = {Bioinform.},
volume = {34},
number = {12},
pages = {2096--2102},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty080},
doi = {10.1093/BIOINFORMATICS/BTY080},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LaponogovSGMV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LareauA18,
author = {Caleb A. Lareau and
Martin J. Aryee},
title = {diffloop: a computational framework for identifying and analyzing
differential {DNA} loops from sequencing data},
journal = {Bioinform.},
volume = {34},
number = {4},
pages = {672--674},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx623},
doi = {10.1093/BIOINFORMATICS/BTX623},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LareauA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LavilleBPZGWPRA18,
author = {Vincent Laville and
Amy R. Bentley and
Florian Priv{\'{e}} and
Xiaofeng Zhu and
Jim Gauderman and
Thomas W. Winkler and
Michael A. Province and
D. C. Rao and
Hugues Aschard},
title = {VarExp: estimating variance explained by genome-wide GxE summary statistics},
journal = {Bioinform.},
volume = {34},
number = {19},
pages = {3412--3414},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty379},
doi = {10.1093/BIOINFORMATICS/BTY379},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LavilleBPZGWPRA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LawsonTBS18,
author = {John T. Lawson and
Eleni M. Tomazou and
Christoph Bock and
Nathan C. Sheffield},
title = {{MIRA:} an {R} package for {DNA} methylation-based inference of regulatory
activity},
journal = {Bioinform.},
volume = {34},
number = {15},
pages = {2649--2650},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty083},
doi = {10.1093/BIOINFORMATICS/BTY083},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LawsonTBS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeM18,
author = {Woonghee Lee and
John L. Markley},
title = {{PINE-SPARKY.2} for automated NMR-based protein structure research},
journal = {Bioinform.},
volume = {34},
number = {9},
pages = {1586--1588},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx785},
doi = {10.1093/BIOINFORMATICS/BTX785},
timestamp = {Mon, 30 Oct 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeOS18,
author = {Jungwoo Lee and
Sejoon Oh and
Lee Sael},
title = {{GIFT:} Guided and Interpretable Factorization for Tensors with an
application to large-scale multi-platform cancer analysis},
journal = {Bioinform.},
volume = {34},
number = {24},
pages = {4151--4158},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty490},
doi = {10.1093/BIOINFORMATICS/BTY490},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeOS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeePHK18,
author = {Wanseon Lee and
Katharine Plant and
Peter Humburg and
Julian C. Knight},
title = {AltHapAlignR: improved accuracy of RNA-seq analyses through the use
of alternative haplotypes},
journal = {Bioinform.},
volume = {34},
number = {14},
pages = {2401--2408},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty125},
doi = {10.1093/BIOINFORMATICS/BTY125},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeePHK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeesGBWC18,
author = {John A. Lees and
Marco Galardini and
Stephen D. Bentley and
Jeffrey N. Weiser and
Jukka Corander},
title = {pyseer: a comprehensive tool for microbial pangenome-wide association
studies},
journal = {Bioinform.},
volume = {34},
number = {24},
pages = {4310--4312},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty539},
doi = {10.1093/BIOINFORMATICS/BTY539},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeesGBWC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LekschasG18,
author = {Fritz Lekschas and
Nils Gehlenborg},
title = {{SATORI:} a system for ontology-guided visual exploration of biomedical
data repositories},
journal = {Bioinform.},
volume = {34},
number = {7},
pages = {1200--1207},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx739},
doi = {10.1093/BIOINFORMATICS/BTX739},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LekschasG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LengerichAX18,
author = {Benjamin J. Lengerich and
Bryon Aragam and
Eric P. Xing},
title = {Personalized regression enables sample-specific pan-cancer analysis},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i178--i186},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty250},
doi = {10.1093/BIOINFORMATICS/BTY250},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LengerichAX18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LerayHLM18,
author = {Matthieu Leray and
Shian{-}Lei Ho and
I{-}Jeng Lin and
Ryuji J. Machida},
title = {{MIDORI} server: a webserver for taxonomic assignment of unknown metazoan
mitochondrial-encoded sequences using a curated database},
journal = {Bioinform.},
volume = {34},
number = {21},
pages = {3753--3754},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty454},
doi = {10.1093/BIOINFORMATICS/BTY454},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LerayHLM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LesgidouEGV18,
author = {Nastazia Lesgidou and
Elias Eliopoulos and
George N. Goulielmos and
Metaxia Vlassi},
title = {Insights on the alteration of functionality of a tyrosine kinase 2
variant: a molecular dynamics study},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i781--i786},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty556},
doi = {10.1093/BIOINFORMATICS/BTY556},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LesgidouEGV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeungDF18,
author = {Michael K. K. Leung and
Andrew Delong and
Brendan J. Frey},
title = {Inference of the human polyadenylation code},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {2889--2898},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty211},
doi = {10.1093/BIOINFORMATICS/BTY211},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeungDF18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeverGGRLSSJKJ18,
author = {Jake Lever and
Sitanshu Gakkhar and
Michael Gottlieb and
Tahereh Rashnavadi and
Santina Lin and
Celia Siu and
Maia Smith and
Martin R. Jones and
Martin Krzywinski and
Steven J. M. Jones},
title = {A collaborative filtering-based approach to biomedical knowledge discovery},
journal = {Bioinform.},
volume = {34},
number = {4},
pages = {652--659},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx613},
doi = {10.1093/BIOINFORMATICS/BTX613},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeverGGRLSSJKJ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Li18,
author = {Heng Li},
title = {Minimap2: pairwise alignment for nucleotide sequences},
journal = {Bioinform.},
volume = {34},
number = {18},
pages = {3094--3100},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty191},
doi = {10.1093/BIOINFORMATICS/BTY191},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Li18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiCHBT18,
author = {Weilong Li and
Lene Christiansen and
Jacob v. B. Hjelmborg and
Jan Baumbach and
Qihua Tan},
title = {On the power of epigenome-wide association studies using a disease-discordant
twin design},
journal = {Bioinform.},
volume = {34},
number = {23},
pages = {4073--4078},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty532},
doi = {10.1093/BIOINFORMATICS/BTY532},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiCHBT18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiHBLWG18,
author = {Yu Li and
Renmin Han and
Chongwei Bi and
Mo Li and
Sheng Wang and
Xin Gao},
title = {DeepSimulator: a deep simulator for Nanopore sequencing},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {2899--2908},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty223},
doi = {10.1093/BIOINFORMATICS/BTY223},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiHBLWG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiJKS18,
author = {Pengyuan Li and
Xiangying Jiang and
Chandra Kambhamettu and
Hagit Shatkay},
title = {Compound image segmentation of published biomedical figures},
journal = {Bioinform.},
volume = {34},
number = {7},
pages = {1192--1199},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx611},
doi = {10.1093/BIOINFORMATICS/BTX611},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiJKS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiLMLAPSLDSC18,
author = {Fuyi Li and
Chen Li and
Tatiana T. Marquez{-}Lago and
Andr{\'{e}} Leier and
Tatsuya Akutsu and
Anthony W. Purcell and
Alexander Ian Smith and
Trevor Lithgow and
Roger J. Daly and
Jiangning Song and
Kuo{-}Chen Chou},
title = {Quokka: a comprehensive tool for rapid and accurate prediction of
kinase family-specific phosphorylation sites in the human proteome},
journal = {Bioinform.},
volume = {34},
number = {24},
pages = {4223--4231},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty522},
doi = {10.1093/BIOINFORMATICS/BTY522},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiLMLAPSLDSC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiQWWZMLZZJ18,
author = {Ruidong Li and
Han Qu and
Shibo Wang and
Julong Wei and
Le Zhang and
Renyuan Ma and
Jianming Lu and
Jianguo Zhu and
Wei{-}De Zhong and
Zhenyu Jia},
title = {GDCRNATools: an R/Bioconductor package for integrative analysis of
lncRNA, miRNA and mRNA data in {GDC}},
journal = {Bioinform.},
volume = {34},
number = {14},
pages = {2515--2517},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty124},
doi = {10.1093/BIOINFORMATICS/BTY124},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiQWWZMLZZJ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiWUXFLG18,
author = {Yu Li and
Sheng Wang and
Ramzan Umarov and
Bingqing Xie and
Ming Fan and
Lihua Li and
Xin Gao},
title = {DEEPre: sequence-based enzyme {EC} number prediction by deep learning},
journal = {Bioinform.},
volume = {34},
number = {5},
pages = {760--769},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx680},
doi = {10.1093/BIOINFORMATICS/BTX680},
timestamp = {Wed, 30 Mar 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiWUXFLG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiWXMCJ18,
author = {Mengci Li and
Shouli Wang and
Guoxiang Xie and
Xiaohui Ma and
Tianlu Chen and
Wei Jia},
title = {polyPK: an {R} package for pharmacokinetic analysis of multi-component
drugs using a metabolomics approach},
journal = {Bioinform.},
volume = {34},
number = {10},
pages = {1792--1794},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx834},
doi = {10.1093/BIOINFORMATICS/BTX834},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiWXMCJ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiXZXZFLGH18,
author = {Yu Li and
Fan Xu and
Fa Zhang and
Pingyong Xu and
Mingshu Zhang and
Ming Fan and
Lihua Li and
Xin Gao and
Renmin Han},
title = {{DLBI:} deep learning guided Bayesian inference for structure reconstruction
of super-resolution fluorescence microscopy},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i284--i294},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty241},
doi = {10.1093/BIOINFORMATICS/BTY241},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiXZXZFLGH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiaoNCZLMF18,
author = {Bo Liao and
Zhibin Ning and
Kai Cheng and
Xu Zhang and
Leyuan Li and
Janice Mayne and
Daniel Figeys},
title = {iMetaLab 1.0: a web platform for metaproteomics data analysis},
journal = {Bioinform.},
volume = {34},
number = {22},
pages = {3954--3956},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty466},
doi = {10.1093/BIOINFORMATICS/BTY466},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiaoNCZLMF18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiaoSH18,
author = {Peizhou Liao and
Glen A. Satten and
Yi{-}Juan Hu},
title = {Robust inference of population structure from next-generation sequencing
data with systematic differences in sequencing},
journal = {Bioinform.},
volume = {34},
number = {7},
pages = {1157--1163},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx708},
doi = {10.1093/BIOINFORMATICS/BTX708},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiaoSH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiaoSPG18,
author = {Yuxing Liao and
R. Dustin Schaeffer and
Jimin Pei and
Nick V. Grishin},
title = {A sequence family database built on {ECOD} structural domains},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {2997--3003},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty214},
doi = {10.1093/BIOINFORMATICS/BTY214},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiaoSPG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiberisVSVL18,
author = {Edgar Liberis and
Petar Velickovic and
Pietro Sormanni and
Michele Vendruscolo and
Pietro Li{\`{o}}},
title = {Parapred: antibody paratope prediction using convolutional and recurrent
neural networks},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {2944--2950},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty305},
doi = {10.1093/BIOINFORMATICS/BTY305},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiberisVSVL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LigonFCBBH18,
author = {Thomas S. Ligon and
Fabian Fr{\"{o}}hlich and
Oana Chis and
Julio R. Banga and
Eva Balsa{-}Canto and
Jan Hasenauer},
title = {GenSSI 2.0: multi-experiment structural identifiability analysis of
{SBML} models},
journal = {Bioinform.},
volume = {34},
number = {8},
pages = {1421--1423},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx735},
doi = {10.1093/BIOINFORMATICS/BTX735},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LigonFCBBH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LinAJJ18,
author = {Jie Lin and
Donald A. Adjeroh and
Bing{-}Hua Jiang and
Yue Jiang},
title = {{K2} and {K} 2 * : efficient alignment-free sequence similarity measurement
based on Kendall statistics},
journal = {Bioinform.},
volume = {34},
number = {10},
pages = {1682--1689},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx809},
doi = {10.1093/BIOINFORMATICS/BTX809},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LinAJJ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LinGHLNSMMCRTS18,
author = {Yen{-}Yi Lin and
Alexander Gawronski and
Faraz Hach and
Sujun Li and
Ibrahim Numanagic and
Iman Sarrafi and
Swati Mishra and
Andrew W. McPherson and
Colin C. Collins and
Milan Radovich and
Haixu Tang and
S{\"{u}}leyman Cenk Sahinalp},
title = {Computational identification of micro-structural variations and their
proteogenomic consequences in cancer},
journal = {Bioinform.},
volume = {34},
number = {10},
pages = {1672--1681},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx807},
doi = {10.1093/BIOINFORMATICS/BTX807},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LinGHLNSMMCRTS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LinGWKADFGACXO18,
author = {Jiaxing Lin and
Jeremy Gresham and
Tongrong Wang and
So Young Kim and
James Alvarez and
Jeffrey S. Damrauer and
Scott Floyd and
Joshua A. Granek and
Andrew S. Allen and
Cliburn Chan and
Jichun Xie and
Kouros Owzar},
title = {bcSeq: an {R} package for fast sequence mapping in high-throughput
shRNA and {CRISPR} screens},
journal = {Bioinform.},
volume = {34},
number = {20},
pages = {3581--3583},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty402},
doi = {10.1093/BIOINFORMATICS/BTY402},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LinGWKADFGACXO18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LinH18,
author = {Hsin{-}Nan Lin and
Wen{-}Lian Hsu},
title = {{DART:} a fast and accurate RNA-seq mapper with a partitioning strategy},
journal = {Bioinform.},
volume = {34},
number = {2},
pages = {190--197},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx558},
doi = {10.1093/BIOINFORMATICS/BTX558},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LinH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LinHCTSPEEKOBMG18,
author = {Hui{-}Yi Lin and
Po{-}Yu Huang and
Dung{-}Tsa Chen and
Heng{-}Yuan Tung and
Thomas A. Sellers and
Julio M. Pow{-}Sang and
Rosalind A. Eeles and
Doug Easton and
Zsofia Kote{-}Jarai and
Ali Amin Al Olama and
Sara Benlloch and
Kenneth Muir and
Graham G. Giles and
Fredrik Wiklund and
Henrik Gronberg and
Christopher A. Haiman and
Johanna Schleutker and
B{\o}rge G. Nordestgaard and
Ruth C. Travis and
Freddie Hamdy and
David E. Neal and
Nora Pashayan and
Kay{-}Tee Khaw and
Janet L. Stanford and
William J. Blot and
Stephen N. Thibodeau and
Christiane Maier and
Adam S. Kibel and
Cezary Cybulski and
Lisa A. Cannon{-}Albright and
Hermann Brenner and
Radka Kaneva and
Jyotsna Batra and
Manuel R. Teixeira and
Hardev Pandha and
Yong{-}Jie Lu and
The PRACTICAL Consortium and
Jong Y. Park},
title = {AA9int: {SNP} interaction pattern search using non-hierarchical additive
model set},
journal = {Bioinform.},
volume = {34},
number = {24},
pages = {4141--4150},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty461},
doi = {10.1093/BIOINFORMATICS/BTY461},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LinHCTSPEEKOBMG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LinJCZWZ18,
author = {Jhih{-}rong Lin and
Daniel Jaroslawicz and
Ying Cai and
Quanwei Zhang and
Zhen Wang and
Zhengdong D. Zhang},
title = {{PGA:} post-GWAS analysis for disease gene identification},
journal = {Bioinform.},
volume = {34},
number = {10},
pages = {1786--1788},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx845},
doi = {10.1093/BIOINFORMATICS/BTX845},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LinJCZWZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LinW18,
author = {Jiecong Lin and
Ka{-}Chun Wong},
title = {Off-target predictions in CRISPR-Cas9 gene editing using deep learning},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i656--i663},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty554},
doi = {10.1093/BIOINFORMATICS/BTY554},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LinW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LindenbaumR18,
author = {Pierre Lindenbaum and
Richard Redon},
title = {bioalcidae, samjs and vcffilterjs: object-oriented formatters and
filters for bioinformatics files},
journal = {Bioinform.},
volume = {34},
number = {7},
pages = {1224--1225},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx734},
doi = {10.1093/BIOINFORMATICS/BTX734},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LindenbaumR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuHXHZG18,
author = {Chun{-}Jie Liu and
Fei{-}Fei Hu and
Meng{-}Xuan Xia and
Leng Han and
Qiong Zhang and
An{-}Yuan Guo},
title = {GSCALite: a web server for gene set cancer analysis},
journal = {Bioinform.},
volume = {34},
number = {21},
pages = {3771--3772},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty411},
doi = {10.1093/BIOINFORMATICS/BTY411},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuHXHZG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuLHC18,
author = {Bin Liu and
Kai Li and
De{-}Shuang Huang and
Kuo{-}Chen Chou},
title = {iEnhancer-EL: identifying enhancers and their strength with ensemble
learning approach},
journal = {Bioinform.},
volume = {34},
number = {22},
pages = {3835--3842},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty458},
doi = {10.1093/BIOINFORMATICS/BTY458},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuLHC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuLYN18,
author = {Jie Liu and
Dejun Lin and
Galip G{\"{u}}rkan Yardimci and
William Stafford Noble},
title = {Unsupervised embedding of single-cell Hi-C data},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i96--i104},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty285},
doi = {10.1093/BIOINFORMATICS/BTY285},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuLYN18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuW18,
author = {Tong Liu and
Zheng Wang},
title = {scHiCNorm: a software package to eliminate systematic biases in single-cell
Hi-C data},
journal = {Bioinform.},
volume = {34},
number = {6},
pages = {1046--1047},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx747},
doi = {10.1093/BIOINFORMATICS/BTX747},
timestamp = {Tue, 07 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuWHC18,
author = {Bin Liu and
Fan Weng and
De{-}Shuang Huang and
Kuo{-}Chen Chou},
title = {iRO-3wPseKNC: identify {DNA} replication origins by three-window-based
PseKNC},
journal = {Bioinform.},
volume = {34},
number = {18},
pages = {3086--3093},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty312},
doi = {10.1093/BIOINFORMATICS/BTY312},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuWHC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuWSFGLFLLHZZW18,
author = {Wanlin Liu and
Lai Wei and
Jianan Sun and
Jinwen Feng and
Gaigai Guo and
Lizhu Liang and
Tianyi Fu and
Mingwei Liu and
Kai Li and
Yin Huang and
Weimin Zhu and
Bei Zhen and
Yi Wang and
Chen Ding and
Jun Qin},
title = {A reference peptide database for proteome quantification based on
experimental mass spectrum response curves},
journal = {Bioinform.},
volume = {34},
number = {16},
pages = {2766--2772},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty201},
doi = {10.1093/BIOINFORMATICS/BTY201},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuWSFGLFLLHZZW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuXYJ18,
author = {Qiao Liu and
Fei Xia and
Qijin Yin and
Rui Jiang},
title = {Chromatin accessibility prediction via a hybrid deep convolutional
neural network},
journal = {Bioinform.},
volume = {34},
number = {5},
pages = {732--738},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx679},
doi = {10.1093/BIOINFORMATICS/BTX679},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuXYJ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuYHC18,
author = {Bin Liu and
Fan Yang and
De{-}Shuang Huang and
Kuo{-}Chen Chou},
title = {iPromoter-2L: a two-layer predictor for identifying promoters and
their types by multi-window-based PseKNC},
journal = {Bioinform.},
volume = {34},
number = {1},
pages = {33--40},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx579},
doi = {10.1093/BIOINFORMATICS/BTX579},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuYHC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuYLEQL18,
author = {Xinan Liu and
Ye Yu and
Jinpeng Liu and
Corrine F. Elliott and
Chen Qian and
Jinze Liu},
title = {A novel data structure to support ultra-fast taxonomic classification
of metagenomic sequences with k-mer signatures},
journal = {Bioinform.},
volume = {34},
number = {1},
pages = {171--178},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx432},
doi = {10.1093/BIOINFORMATICS/BTX432},
timestamp = {Tue, 17 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuYLEQL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuYWP18,
author = {Yang Liu and
Qing Ye and
Liwei Wang and
Jian Peng},
title = {Learning structural motif representations for efficient protein structure
search},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i773--i780},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty585},
doi = {10.1093/BIOINFORMATICS/BTY585},
timestamp = {Tue, 16 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuYWP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LoZSNC18,
author = {Jonathan Lo and
Deric Zhang and
Emily Speranza and
Jose A. Negron and
John H. Connor},
title = {HoTResDB: host transcriptional response database for viral hemorrhagic
fevers},
journal = {Bioinform.},
volume = {34},
number = {2},
pages = {321--322},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx599},
doi = {10.1093/BIOINFORMATICS/BTX599},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LoZSNC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LochelRFH18,
author = {Hannah F. L{\"{o}}chel and
Mona Riemenschneider and
Dmitrij Frishman and
Dominik Heider},
title = {{SCOTCH:} subtype {A} coreceptor tropism classification in {HIV-1}},
journal = {Bioinform.},
volume = {34},
number = {15},
pages = {2575--2580},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty170},
doi = {10.1093/BIOINFORMATICS/BTY170},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LochelRFH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LochovskyZG18,
author = {Lucas Lochovsky and
Jing Zhang and
Mark Gerstein},
title = {{MOAT:} efficient detection of highly mutated regions with the Mutations
Overburdening Annotations Tool},
journal = {Bioinform.},
volume = {34},
number = {6},
pages = {1031--1033},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx700},
doi = {10.1093/BIOINFORMATICS/BTX700},
timestamp = {Tue, 18 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LochovskyZG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LokaTDRNR18,
author = {Tobias P. Loka and
Simon H. Tausch and
Piotr Wojtek Dabrowski and
Aleksandar Radonic and
Andreas Nitsche and
Bernhard Y. Renard},
title = {PriLive: privacy-preserving real-time filtering for next-generation
sequencing},
journal = {Bioinform.},
volume = {34},
number = {14},
pages = {2376--2383},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty128},
doi = {10.1093/BIOINFORMATICS/BTY128},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LokaTDRNR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LomizeHP18,
author = {Andrei L. Lomize and
Jacob M. Hage and
Irina D. Pogozheva},
title = {Membranome 2.0: database for proteome-wide profiling of bitopic proteins
and their dimers},
journal = {Bioinform.},
volume = {34},
number = {6},
pages = {1061--1062},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx720},
doi = {10.1093/BIOINFORMATICS/BTX720},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LomizeHP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LoosKH18,
author = {Carolin Loos and
Sabrina Krause and
Jan Hasenauer},
title = {Hierarchical optimization for the efficient parametrization of {ODE}
models},
journal = {Bioinform.},
volume = {34},
number = {24},
pages = {4266--4273},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty514},
doi = {10.1093/BIOINFORMATICS/BTY514},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LoosKH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Lopez-Massaguer18,
author = {Oriol L{\'{o}}pez{-}Massaguer and
Ferran Sanz and
Manuel Pastor},
title = {An automated tool for obtaining QSAR-ready series of compounds using
semantic web technologies},
journal = {Bioinform.},
volume = {34},
number = {1},
pages = {131--133},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx566},
doi = {10.1093/BIOINFORMATICS/BTX566},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Lopez-Massaguer18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LoucaD18,
author = {Stilianos Louca and
Michael Doebeli},
title = {Efficient comparative phylogenetics on large trees},
journal = {Bioinform.},
volume = {34},
number = {6},
pages = {1053--1055},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx701},
doi = {10.1093/BIOINFORMATICS/BTX701},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LoucaD18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LuBKS18,
author = {Jacob S. Lu and
Eckart Bindewald and
Wojciech Kasprzak and
Bruce A. Shapiro},
title = {RiboSketch: versatile visualization of multi-stranded {RNA} and {DNA}
secondary structure},
journal = {Bioinform.},
volume = {34},
number = {24},
pages = {4297--4299},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty468},
doi = {10.1093/BIOINFORMATICS/BTY468},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LuBKS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LuYLWLPLW18,
author = {Chengqian Lu and
Mengyun Yang and
Feng Luo and
Fang{-}Xiang Wu and
Min Li and
Yi Pan and
Yaohang Li and
Jianxin Wang},
title = {Prediction of lncRNA-disease associations based on inductive matrix
completion},
journal = {Bioinform.},
volume = {34},
number = {19},
pages = {3357--3364},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty327},
doi = {10.1093/BIOINFORMATICS/BTY327},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LuYLWLPLW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LuberTCPK18,
author = {Jacob M. Luber and
Braden T. Tierney and
Evan M. Cofer and
Chirag J. Patel and
Aleksandar D. Kostic},
title = {Aether: leveraging linear programming for optimal cloud computing
in genomics},
journal = {Bioinform.},
volume = {34},
number = {9},
pages = {1565--1567},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx787},
doi = {10.1093/BIOINFORMATICS/BTX787},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LuberTCPK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LuckenPCMRD18,
author = {Malte L{\"{u}}cken and
M. J. T. Page and
A. J. Crosby and
S. Mason and
Gesine Reinert and
Charlotte M. Deane},
title = {CommWalker: correctly evaluating modules in molecular networks in
light of annotation bias},
journal = {Bioinform.},
volume = {34},
number = {6},
pages = {994--1000},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx706},
doi = {10.1093/BIOINFORMATICS/BTX706},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LuckenPCMRD18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LudwigDB18,
author = {Marcus Ludwig and
Kai D{\"{u}}hrkop and
Sebastian B{\"{o}}cker},
title = {Bayesian networks for mass spectrometric metabolite identification
via molecular fingerprints},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i333--i340},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty245},
doi = {10.1093/BIOINFORMATICS/BTY245},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LudwigDB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LuoFSH18,
author = {Zhihui Luo and
Xinping Fan and
Yao Su and
Yu S. Huang},
title = {Accurity: accurate tumor purity and ploidy inference from tumor-normal
{WGS} data by jointly modelling somatic copy number alterations and
heterozygous germline single-nucleotide-variants},
journal = {Bioinform.},
volume = {34},
number = {12},
pages = {2004--2011},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty043},
doi = {10.1093/BIOINFORMATICS/BTY043},
timestamp = {Mon, 16 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LuoFSH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LuoLWLLW18,
author = {Huimin Luo and
Min Li and
Shaokai Wang and
Quan Liu and
Yaohang Li and
Jianxin Wang},
title = {Computational drug repositioning using low-rank matrix approximation
and randomized algorithms},
journal = {Bioinform.},
volume = {34},
number = {11},
pages = {1904--1912},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty013},
doi = {10.1093/BIOINFORMATICS/BTY013},
timestamp = {Fri, 21 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LuoLWLLW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LuoYYZWLW18,
author = {Ling Luo and
Zhihao Yang and
Pei Yang and
Yin Zhang and
Lei Wang and
Hongfei Lin and
Jian Wang},
title = {An attention-based BiLSTM-CRF approach to document-level chemical
named entity recognition},
journal = {Bioinform.},
volume = {34},
number = {8},
pages = {1381--1388},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx761},
doi = {10.1093/BIOINFORMATICS/BTX761},
timestamp = {Mon, 03 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LuoYYZWLW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LuxBCLLAH18,
author = {Markus Lux and
Ryan Remy Brinkman and
C{\'{e}}dric Chauve and
Adam Laing and
Anna Lorenc and
Lucie Abeler{-}D{\"{o}}rner and
Barbara Hammer},
title = {flowLearn: fast and precise identification and quality checking of
cell populations in flow cytometry},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {2245--2253},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty082},
doi = {10.1093/BIOINFORMATICS/BTY082},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LuxBCLLAH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaLGMCC18,
author = {Xuan Ma and
Chunyan Liu and
Lian{-}Feng Gu and
Beixin Mo and
Xiaofeng Cao and
Xuemei Chen},
title = {TarHunter, a tool for predicting conserved microRNA targets and target
mimics in plants},
journal = {Bioinform.},
volume = {34},
number = {9},
pages = {1574--1576},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx797},
doi = {10.1093/BIOINFORMATICS/BTX797},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaLGMCC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaaralaBDHB18,
author = {Altti Ilari Maarala and
Zurab Bzhalava and
Joakim Dillner and
Keijo Heljanko and
Davit Bzhalava},
title = {ViraPipe: scalable parallel pipeline for viral metagenome analysis
from next generation sequencing reads},
journal = {Bioinform.},
volume = {34},
number = {6},
pages = {928--935},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx702},
doi = {10.1093/BIOINFORMATICS/BTX702},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaaralaBDHB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MachielaC18,
author = {Mitchell J. Machiela and
Stephen J. Chanock},
title = {LDassoc: an online tool for interactively exploring genome-wide association
study results and prioritizing variants for functional investigation},
journal = {Bioinform.},
volume = {34},
number = {5},
pages = {887--889},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx561},
doi = {10.1093/BIOINFORMATICS/BTX561},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MachielaC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaggeWSSG18,
author = {Arjun Magge and
Davy Weissenbacher and
Abeed Sarker and
Matthew Scotch and
Graciela Gonzalez{-}Hernandez},
title = {Deep neural networks and distant supervision for geographic location
mention extraction},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i565--i573},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty273},
doi = {10.1093/BIOINFORMATICS/BTY273},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaggeWSSG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MahlichSRB18,
author = {Yannick Mahlich and
Martin Steinegger and
Burkhard Rost and
Yana Bromberg},
title = {{HFSP:} high speed homology-driven function annotation of proteins},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i304--i312},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty262},
doi = {10.1093/BIOINFORMATICS/BTY262},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MahlichSRB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaiZLLLWTL18,
author = {Huijun Mai and
Yifan Zhang and
Dinghua Li and
Henry Chi{-}Ming Leung and
Ruibang Luo and
Chi{-}Kwong Wong and
Hing{-}Fung Ting and
Tak Wah Lam},
title = {{AC-DIAMOND} v1: accelerating large-scale DNA-protein alignment},
journal = {Bioinform.},
volume = {34},
number = {21},
pages = {3744--3746},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty391},
doi = {10.1093/BIOINFORMATICS/BTY391},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaiZLLLWTL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MajorosHCWYR18,
author = {William H. Majoros and
Carson Holt and
Michael Campbell and
Doreen Ware and
Mark Yandell and
Timothy E. Reddy},
title = {Predicting gene structure changes resulting from genetic variants
via exon definition features},
journal = {Bioinform.},
volume = {34},
number = {21},
pages = {3616--3623},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty324},
doi = {10.1093/BIOINFORMATICS/BTY324},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MajorosHCWYR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MalikAP18,
author = {Laraib Malik and
Fatemeh Almodaresi and
Rob Patro},
title = {Grouper: graph-based clustering and annotation for improved de novo
transcriptome analysis},
journal = {Bioinform.},
volume = {34},
number = {19},
pages = {3265--3272},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty378},
doi = {10.1093/BIOINFORMATICS/BTY378},
timestamp = {Tue, 03 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MalikAP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MalysaHORGW18,
author = {Greg Malysa and
Mikel Hernaez and
Idoia Ochoa and
Milind Rao and
Karthik Ganesan and
Tsachy Weissman},
title = {{QVZ:} lossy compression of quality values},
journal = {Bioinform.},
volume = {34},
number = {1},
pages = {179},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx654},
doi = {10.1093/BIOINFORMATICS/BTX654},
timestamp = {Thu, 10 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MalysaHORGW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ManatakisRB18,
author = {Dimitris V. Manatakis and
Vineet K. Raghu and
Panayiotis V. Benos},
title = {piMGM: incorporating multi-source priors in mixed graphical models
for learning disease networks},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i848--i856},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty591},
doi = {10.1093/BIOINFORMATICS/BTY591},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ManatakisRB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MandricKZ18,
author = {Igor Mandric and
Sergey Knyazev and
Alex Zelikovsky},
title = {Repeat-aware evaluation of scaffolding tools},
journal = {Bioinform.},
volume = {34},
number = {15},
pages = {2530--2537},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty131},
doi = {10.1093/BIOINFORMATICS/BTY131},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MandricKZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MannakeeBWGK18,
author = {Brian K. Mannakee and
Uthra Balaji and
Agnieszka K. Witkiewicz and
Ryan N. Gutenkunst and
Erik S. Knudsen},
title = {Sensitive and specific post-call filtering of genetic variants in
xenograft and primary tumors},
journal = {Bioinform.},
volume = {34},
number = {10},
pages = {1713--1718},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty010},
doi = {10.1093/BIOINFORMATICS/BTY010},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MannakeeBWGK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MansouriYRCE18,
author = {Mehrdad Mansouri and
Bowei Yuan and
Colin J. D. Ross and
Bruce C. Carleton and
Martin Ester},
title = {{HUME:} large-scale detection of causal genetic factors of adverse
drug reactions},
journal = {Bioinform.},
volume = {34},
number = {24},
pages = {4274--4283},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty475},
doi = {10.1093/BIOINFORMATICS/BTY475},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MansouriYRCE18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MarcaisDK18,
author = {Guillaume Mar{\c{c}}ais and
Dan F. DeBlasio and
Carl Kingsford},
title = {Asymptotically optimal minimizers schemes},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i13--i22},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty258},
doi = {10.1093/BIOINFORMATICS/BTY258},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MarcaisDK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Margelevicius18,
author = {Mindaugas Margelevicius},
title = {A low-complexity add-on score for protein remote homology search with
{COMER}},
journal = {Bioinform.},
volume = {34},
number = {12},
pages = {2037--2045},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty048},
doi = {10.1093/BIOINFORMATICS/BTY048},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Margelevicius18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MarietteV18,
author = {J{\'{e}}r{\^{o}}me Mariette and
Nathalie Villa{-}Vialaneix},
title = {Unsupervised multiple kernel learning for heterogeneous data integration},
journal = {Bioinform.},
volume = {34},
number = {6},
pages = {1009--1015},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx682},
doi = {10.1093/BIOINFORMATICS/BTX682},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MarietteV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Marin-LopezPABG18,
author = {Manuel Alejandro Mar{\'{\i}}n{-}L{\'{o}}pez and
Joan Planas{-}Iglesias and
Joaquim Aguirre{-}Plans and
Jaume Bonet and
Javier Garc{\'{\i}}a{-}Garc{\'{\i}}a and
Narcis Fernandez{-}Fuentes and
Baldo Oliva},
title = {On the mechanisms of protein interactions: predicting their affinity
from unbound tertiary structures},
journal = {Bioinform.},
volume = {34},
number = {4},
pages = {592--598},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx616},
doi = {10.1093/BIOINFORMATICS/BTX616},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Marin-LopezPABG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MarksSD18,
author = {Claire Marks and
Jiye Shi and
Charlotte M. Deane},
title = {Predicting loop conformational ensembles},
journal = {Bioinform.},
volume = {34},
number = {6},
pages = {949--956},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx718},
doi = {10.1093/BIOINFORMATICS/BTX718},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MarksSD18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Marot-Lassauzaie18,
author = {Val{\'{e}}rie Marot{-}Lassauzaie and
Michael Bernhofer and
Burkhard Rost},
title = {Correcting mistakes in predicting distributions},
journal = {Bioinform.},
volume = {34},
number = {19},
pages = {3385--3386},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty346},
doi = {10.1093/BIOINFORMATICS/BTY346},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Marot-Lassauzaie18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Martinez-Vernon18,
author = {Andrea S. Martinez{-}Vernon and
Frederick Farrell and
Orkun S. Soyer},
title = {MetQy - an {R} package to query metabolic functions of genes and genomes},
journal = {Bioinform.},
volume = {34},
number = {23},
pages = {4134--4137},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty447},
doi = {10.1093/BIOINFORMATICS/BTY447},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Martinez-Vernon18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MartinsNOHRF18,
author = {Leonardo Martins and
Ramakanth Neeli{-}Venkata and
Samuel M. D. Oliveira and
Antti H{\"{a}}kkinen and
Andre S. Ribeiro and
Jos{\'{e}} M. Fonseca},
title = {{SCIP:} a single-cell image processor toolbox},
journal = {Bioinform.},
volume = {34},
number = {24},
pages = {4318--4320},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty505},
doi = {10.1093/BIOINFORMATICS/BTY505},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MartinsNOHRF18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MarwahKSSLFG18,
author = {Veer Singh Marwah and
Pia Anneli Sofia Kinaret and
Angela Serra and
Giovanni Scala and
Antti Lauerma and
Vittorio Fortino and
Dario Greco},
title = {INfORM: Inference of NetwOrk Response Modules},
journal = {Bioinform.},
volume = {34},
number = {12},
pages = {2136--2138},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty063},
doi = {10.1093/BIOINFORMATICS/BTY063},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MarwahKSSLFG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MarzeBSG18,
author = {Nicholas A. Marze and
Shourya S. Roy Burman and
William Sheffler and
Jeffrey J. Gray},
title = {Efficient flexible backbone protein-protein docking for challenging
targets},
journal = {Bioinform.},
volume = {34},
number = {20},
pages = {3461--3469},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty355},
doi = {10.1093/BIOINFORMATICS/BTY355},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MarzeBSG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MasisonMLS18,
author = {Joseph Masison and
Paul J. Michalski and
Leslie M. Loew and
Adam D. Schuyler},
title = {mol2sphere: spherical decomposition of multi-domain molecules for
visualization and coarse grained spatial modeling},
journal = {Bioinform.},
volume = {34},
number = {22},
pages = {3948--3950},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty487},
doi = {10.1093/BIOINFORMATICS/BTY487},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MasisonMLS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MayerRGP18,
author = {Joshua Mayer and
Raziur Rahman and
Souparno Ghosh and
Ranadip Pal},
title = {Sequential feature selection and inference using multi-variate random
forests},
journal = {Bioinform.},
volume = {34},
number = {8},
pages = {1336--1344},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx784},
doi = {10.1093/BIOINFORMATICS/BTX784},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MayerRGP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaziarzPWG18,
author = {Marlena Maziarz and
Ruth M. Pfeiffer and
Yunhu Wan and
Mitchell H. Gail},
title = {Using standard microbiome reference groups to simplify beta-diversity
analyses and facilitate independent validation},
journal = {Bioinform.},
volume = {34},
number = {19},
pages = {3249--3257},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty297},
doi = {10.1093/BIOINFORMATICS/BTY297},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaziarzPWG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/McCoyPVRGGYA18,
author = {Matthew J. McCoy and
Alexander J. Paul and
Matheus B. Victor and
Michelle Richner and
Harrison W. Gabel and
Haijun Gong and
Andrew S. Yoo and
Tae{-}Hyuk Ahn},
title = {{LONGO:} an {R} package for interactive gene length dependent analysis
for neuronal identity},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i422--i428},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty243},
doi = {10.1093/BIOINFORMATICS/BTY243},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/McCoyPVRGGYA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/McIverAFSMWSH18,
author = {Lauren J. McIver and
Galeb Abu{-}Ali and
Eric A. Franzosa and
Randall Schwager and
Xochitl C. Morgan and
Levi Waldron and
Nicola Segata and
Curtis Huttenhower},
title = {bioBakery: a meta'omic analysis environment},
journal = {Bioinform.},
volume = {34},
number = {7},
pages = {1235--1237},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx754},
doi = {10.1093/BIOINFORMATICS/BTX754},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/McIverAFSMWSH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MegaliosDB18,
author = {Anargyros Megalios and
R{\'{o}}n{\'{a}}n Daly and
Karl E. V. Burgess},
title = {MetaboCraft: building a Minecraft plugin for metabolomics},
journal = {Bioinform.},
volume = {34},
number = {15},
pages = {2693--2694},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty102},
doi = {10.1093/BIOINFORMATICS/BTY102},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MegaliosDB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MelckenbeeckACP18,
author = {Ine Melckenbeeck and
Pieter Audenaert and
Didier Colle and
Mario Pickavet},
title = {Efficiently counting all orbits of graphlets of any order in a graph
using autogenerated equations},
journal = {Bioinform.},
volume = {34},
number = {8},
pages = {1372--1380},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx758},
doi = {10.1093/BIOINFORMATICS/BTX758},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MelckenbeeckACP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MendozaT18,
author = {Brian J. Mendoza and
Cong T. Trinh},
title = {Enhanced guide-RNA design and targeting analysis for precise {CRISPR}
genome editing of single and consortia of industrially relevant and
non-model organisms},
journal = {Bioinform.},
volume = {34},
number = {1},
pages = {16--23},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx564},
doi = {10.1093/BIOINFORMATICS/BTX564},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MendozaT18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MenegidioJON18,
author = {Fabiano B. Menegidio and
Daniela L. Jabes and
Regina Costa de Oliveira and
Luiz R. Nunes},
title = {Dugong: a Docker image, based on Ubuntu Linux, focused on reproducibility
and replicability for bioinformatics analyses},
journal = {Bioinform.},
volume = {34},
number = {3},
pages = {514--515},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx554},
doi = {10.1093/BIOINFORMATICS/BTX554},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MenegidioJON18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MengPY18,
author = {Qiaozhen Meng and
Zhenling Peng and
Jianyi Yang},
title = {CoABind: a novel algorithm for Coenzyme {A} (CoA)- and CoA derivatives-binding
residues prediction},
journal = {Bioinform.},
volume = {34},
number = {15},
pages = {2598--2604},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty162},
doi = {10.1093/BIOINFORMATICS/BTY162},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MengPY18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MervinBKASFBEB18,
author = {Lewis H. Mervin and
Krishna C. Bulusu and
Leen Kalash and
Avid M. Afzal and
Fredrik Svensson and
Mike A. Firth and
Ian P. Barrett and
Ola Engkvist and
Andreas Bender},
title = {Orthologue chemical space and its influence on target prediction},
journal = {Bioinform.},
volume = {34},
number = {1},
pages = {72--79},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx525},
doi = {10.1093/BIOINFORMATICS/BTX525},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MervinBKASFBEB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MeyerB18,
author = {Hannah Verena Meyer and
Ewan Birney},
title = {PhenotypeSimulator: {A} comprehensive framework for simulating multi-trait,
multi-locus genotype to phenotype relationships},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {2951--2956},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty197},
doi = {10.1093/BIOINFORMATICS/BTY197},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MeyerB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MiaoAPK18,
author = {Zong Miao and
Marcus Alvarez and
P{\"{a}}ivi Pajukanta and
Arthur Ko},
title = {ASElux: an ultra-fast and accurate allelic reads counter},
journal = {Bioinform.},
volume = {34},
number = {8},
pages = {1313--1320},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx762},
doi = {10.1093/BIOINFORMATICS/BTX762},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MiaoAPK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MiaoDWZ18,
author = {Zhun Miao and
Ke Deng and
Xiaowo Wang and
Xuegong Zhang},
title = {DEsingle for detecting three types of differential expression in single-cell
RNA-seq data},
journal = {Bioinform.},
volume = {34},
number = {18},
pages = {3223--3224},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty332},
doi = {10.1093/BIOINFORMATICS/BTY332},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MiaoDWZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MihBCCSKMZP18,
author = {Nathan Mih and
Elizabeth Brunk and
Ke Chen and
Edward Catoiu and
Anand Sastry and
Erol S. Kavvas and
Jonathan M. Monk and
Zhen Zhang and
Bernhard O. Palsson},
title = {ssbio: a Python framework for structural systems biology},
journal = {Bioinform.},
volume = {34},
number = {12},
pages = {2155--2157},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty077},
doi = {10.1093/BIOINFORMATICS/BTY077},
timestamp = {Thu, 29 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MihBCCSKMZP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MikheenkoPSAG18,
author = {Alla Mikheenko and
Andrey D. Prjibelski and
Vladislav Saveliev and
Dmitry Antipov and
Alexey A. Gurevich},
title = {Versatile genome assembly evaluation with {QUAST-LG}},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i142--i150},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty266},
doi = {10.1093/BIOINFORMATICS/BTY266},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MikheenkoPSAG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MinHSRS18,
author = {Josine L. Min and
Gibran Hemani and
George Davey Smith and
Caroline Relton and
Matthew Suderman},
title = {Meffil: efficient normalization and analysis of very large {DNA} methylation
datasets},
journal = {Bioinform.},
volume = {34},
number = {23},
pages = {3983--3989},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty476},
doi = {10.1093/BIOINFORMATICS/BTY476},
timestamp = {Thu, 05 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MinHSRS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MinLZ18,
author = {Wenwen Min and
Juan Liu and
Shihua Zhang},
title = {Edge-group sparse {PCA} for network-guided high dimensional data analysis},
journal = {Bioinform.},
volume = {34},
number = {20},
pages = {3479--3487},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty362},
doi = {10.1093/BIOINFORMATICS/BTY362},
timestamp = {Wed, 04 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MinLZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MinamiSOC18,
author = {Shintaro Minami and
Kengo Sawada and
Motonori Ota and
George Chikenji},
title = {{MICAN-SQ:} a sequential protein structure alignment program that
is applicable to monomers and all types of oligomers},
journal = {Bioinform.},
volume = {34},
number = {19},
pages = {3324--3331},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty369},
doi = {10.1093/BIOINFORMATICS/BTY369},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MinamiSOC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MingDCWLY18,
author = {Jingsi Ming and
Mingwei Dai and
Mingxuan Cai and
Xiang Wan and
Jin Liu and
Can Yang},
title = {{LSMM:} a statistical approach to integrating functional annotations
with genome-wide association studies},
journal = {Bioinform.},
volume = {34},
number = {16},
pages = {2788--2796},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty187},
doi = {10.1093/BIOINFORMATICS/BTY187},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MingDCWLY18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MirabelloW18,
author = {Claudio Mirabello and
Bj{\"{o}}rn Wallner},
title = {Topology independent structural matching discovers novel templates
for protein interfaces},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i787--i794},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty587},
doi = {10.1093/BIOINFORMATICS/BTY587},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MirabelloW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MitreaWDKRDB18,
author = {Cristina Mitrea and
Priyanga Wijesinghe and
Gregory Dyson and
Ad{\'{e}}le Kruger and
Douglas M. Ruden and
Sorin Draghici and
Aliccia Bollig{-}Fischer},
title = {Integrating 5hmC and gene expression data to infer regulatory mechanisms},
journal = {Bioinform.},
volume = {34},
number = {9},
pages = {1441--1447},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx777},
doi = {10.1093/BIOINFORMATICS/BTX777},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MitreaWDKRDB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MiuraGMHVBK18,
author = {Sayaka Miura and
Karen Gomez and
Oscar D. Murillo and
Louise A. Huuki and
Tracy Vu and
Tiffany Buturla and
Sudhir Kumar},
title = {Predicting clone genotypes from tumor bulk sequencing of multiple
samples},
journal = {Bioinform.},
volume = {34},
number = {23},
pages = {4017--4026},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty469},
doi = {10.1093/BIOINFORMATICS/BTY469},
timestamp = {Tue, 02 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MiuraGMHVBK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MiuraHBVGK18,
author = {Sayaka Miura and
Louise A. Huuki and
Tiffany Buturla and
Tracy Vu and
Karen Gomez and
Sudhir Kumar},
title = {Computational enhancement of single-cell sequences for inferring tumor
evolution},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i917--i926},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty571},
doi = {10.1093/BIOINFORMATICS/BTY571},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MiuraHBVGK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MockWDBJH18,
author = {Andreas Mock and
Rolf Warta and
Steffen Dettling and
Benedikt Brors and
Dirk J{\"{a}}ger and
Christel Herold{-}Mende},
title = {MetaboDiff: an {R} package for differential metabolomic analysis},
journal = {Bioinform.},
volume = {34},
number = {19},
pages = {3417--3418},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty344},
doi = {10.1093/BIOINFORMATICS/BTY344},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MockWDBJH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ModhaTCDH18,
author = {Sejal Modha and
Anil S. Thanki and
Susan F. Cotmore and
Andrew J. Davison and
Joseph Hughes},
title = {ViCTree: an automated framework for taxonomic classification from
protein sequences},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {2195--2200},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty099},
doi = {10.1093/BIOINFORMATICS/BTY099},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ModhaTCDH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MoeinGMKPCdS18,
author = {Mahsa Moein and
Kamil Grzyb and
Teresa Gon{\c{c}}alves Martins and
Shinya Komoto and
Francesca Peri and
Alexander D. Crawford and
Aymeric Fouquier d'H{\'{e}}rou{\"{e}}l and
Alexander Skupin},
title = {CaSiAn: a Calcium Signaling Analyzer tool},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {3052--3054},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty281},
doi = {10.1093/BIOINFORMATICS/BTY281},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MoeinGMKPCdS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MolnarHI18,
author = {Michael Molnar and
Ehsan Haghshenas and
Lucian Ilie},
title = {{SAGE2:} parallel human genome assembly},
journal = {Bioinform.},
volume = {34},
number = {4},
pages = {678--680},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx648},
doi = {10.1093/BIOINFORMATICS/BTX648},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MolnarHI18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MondeelCB18,
author = {Thierry D. G. A. Mondeel and
Fr{\'{e}}d{\'{e}}ric Cr{\'{e}}mazy and
Matteo Barberis},
title = {{GEMMER:} GEnome-wide tool for Multi-scale Modeling data Extraction
and Representation for Saccharomyces cerevisiae},
journal = {Bioinform.},
volume = {34},
number = {12},
pages = {2147--2149},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty052},
doi = {10.1093/BIOINFORMATICS/BTY052},
timestamp = {Wed, 04 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MondeelCB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MonitG18,
author = {Christopher Monit and
Richard A. Goldstein},
title = {SubRecon: ancestral reconstruction of amino acid substitutions along
a branch in a phylogeny},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {2297--2299},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty101},
doi = {10.1093/BIOINFORMATICS/BTY101},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MonitG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MonsarratV18,
author = {Paul Monsarrat and
Jean{-}Noel Vergnes},
title = {Data mining of effect sizes from PubMed abstracts: a cross-study conceptual
replication},
journal = {Bioinform.},
volume = {34},
number = {15},
pages = {2698--2700},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty153},
doi = {10.1093/BIOINFORMATICS/BTY153},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MonsarratV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MonteMGCB18,
author = {Matteo Lo Monte and
Candida Manelfi and
Marica Gemei and
Daniela Corda and
Andrea Rosario Beccari},
title = {ADPredict: ADP-ribosylation site prediction based on physicochemical
and structural descriptors},
journal = {Bioinform.},
volume = {34},
number = {15},
pages = {2566--2574},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty159},
doi = {10.1093/BIOINFORMATICS/BTY159},
timestamp = {Mon, 06 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MonteMGCB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Mora-MarquezVH18,
author = {Fernando Mora{-}M{\'{a}}rquez and
Jos{\'{e}} Luis V{\'{a}}zquez{-}Poletti and
Unai L{\'{o}}pez de Heredia},
title = {NGScloud: RNA-seq analysis of non-model species using cloud computing},
journal = {Bioinform.},
volume = {34},
number = {19},
pages = {3405--3407},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty363},
doi = {10.1093/BIOINFORMATICS/BTY363},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Mora-MarquezVH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MoraesFAMLLASGM18,
author = {Lauro {\^{A}}ngelo Gon{\c{c}}alves de Moraes and
{\'{E}}rica Barbosa Felestrino and
Renata de Almeida Barbosa Assis and
Diogo Matos and
Joubert de Castro Lima and
Leandro de Ara{\'{u}}jo Lima and
Nalvo F. de Almeida Jr. and
Jo{\~{a}}o Carlos Setubal and
Camila Carri{\~{a}}o Machado Garcia and
Leandro M{\'{a}}rcio Moreira},
title = {TabPath: interactive tables for metabolic pathway analysis},
journal = {Bioinform.},
volume = {34},
number = {6},
pages = {1040--1042},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx714},
doi = {10.1093/BIOINFORMATICS/BTX714},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MoraesFAMLLASGM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MorenoMMGF18,
author = {Juan Jos{\'{e}} Moreno and
Antonio Mart{\'{\i}}nez{-}S{\'{a}}nchez and
Jos{\'{e}} Antonio Mart{\'{\i}}nez and
Ester M. Garz{\'{o}}n and
Jos{\'{e}}{-}Jes{\'{u}}s Fern{\'{a}}ndez},
title = {TomoEED: fast edge-enhancing denoising of tomographic volumes},
journal = {Bioinform.},
volume = {34},
number = {21},
pages = {3776--3778},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty435},
doi = {10.1093/BIOINFORMATICS/BTY435},
timestamp = {Sun, 06 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MorenoMMGF18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MorisseLL18,
author = {Pierre Morisse and
Thierry Lecroq and
Arnaud Lefebvre},
title = {Hybrid correction of highly noisy long reads using a variable-order
de Bruijn graph},
journal = {Bioinform.},
volume = {34},
number = {24},
pages = {4213--4222},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty521},
doi = {10.1093/BIOINFORMATICS/BTY521},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MorisseLL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MotazediRFBTMM18,
author = {Ehsan Motazedi and
Dick de Ridder and
Richard Finkers and
Samantha J. Baldwin and
Susan Thomson and
Katrina Monaghan and
Chris Maliepaard},
title = {TriPoly: haplotype estimation for polyploids using sequencing data
of related individuals},
journal = {Bioinform.},
volume = {34},
number = {22},
pages = {3864--3872},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty442},
doi = {10.1093/BIOINFORMATICS/BTY442},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MotazediRFBTMM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MukherjeeZFSK18,
author = {Sumit Mukherjee and
Yue Zhang and
Joshua Fan and
Georg Seelig and
Sreeram Kannan},
title = {Scalable preprocessing for sparse scRNA-seq data exploiting prior
knowledge},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i124--i132},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty293},
doi = {10.1093/BIOINFORMATICS/BTY293},
timestamp = {Mon, 30 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MukherjeeZFSK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MullerCLLD18,
author = {S{\"{o}}ren M{\"{u}}ller and
Ara Cho and
Siyuan J. Liu and
Daniel A. Lim and
Aaron Diaz},
title = {{CONICS} integrates scRNA-seq with {DNA} sequencing to map gene expression
to tumor sub-clones},
journal = {Bioinform.},
volume = {34},
number = {18},
pages = {3217--3219},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty316},
doi = {10.1093/BIOINFORMATICS/BTY316},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MullerCLLD18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MullerRS18,
author = {Nicola F. M{\"{u}}ller and
David A. Rasmussen and
Tanja Stadler},
title = {{MASCOT:} parameter and state inference under the marginal structured
coalescent approximation},
journal = {Bioinform.},
volume = {34},
number = {22},
pages = {3843--3848},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty406},
doi = {10.1093/BIOINFORMATICS/BTY406},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MullerRS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MunteanuMO18,
author = {Alina Munteanu and
Neelanjan Mukherjee and
Uwe Ohler},
title = {{SSMART:} sequence-structure motif identification for RNA-binding
proteins},
journal = {Bioinform.},
volume = {34},
number = {23},
pages = {3990--3998},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty404},
doi = {10.1093/BIOINFORMATICS/BTY404},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MunteanuMO18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MurrayB18,
author = {Kevin D. Murray and
Justin O. Borevitz},
title = {Axe: rapid, competitive sequence read demultiplexing using a trie},
journal = {Bioinform.},
volume = {34},
number = {22},
pages = {3924--3925},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty432},
doi = {10.1093/BIOINFORMATICS/BTY432},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MurrayB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NaLRS18,
author = {Joong Chae Na and
Jongchan Lee and
Je{-}Keun Rhee and
Soo{-}Yong Shin},
title = {{PEATH:} single-individual haplotyping by a probabilistic evolutionary
algorithm with toggling},
journal = {Bioinform.},
volume = {34},
number = {11},
pages = {1801--1807},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty012},
doi = {10.1093/BIOINFORMATICS/BTY012},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NaLRS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NadalinC18,
author = {Francesca Nadalin and
Alessandra Carbone},
title = {Protein-protein interaction specificity is captured by contact preferences
and interface composition},
journal = {Bioinform.},
volume = {34},
number = {3},
pages = {459--468},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx584},
doi = {10.1093/BIOINFORMATICS/BTX584},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NadalinC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NakamuraYTK18,
author = {Tsukasa Nakamura and
Kazunori D. Yamada and
Kentaro Tomii and
Kazutaka Katoh},
title = {Parallelization of {MAFFT} for large-scale multiple sequence alignments},
journal = {Bioinform.},
volume = {34},
number = {14},
pages = {2490--2492},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty121},
doi = {10.1093/BIOINFORMATICS/BTY121},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NakamuraYTK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NakatoS18,
author = {Ryuichiro Nakato and
Katsuhiko Shirahige},
title = {Sensitive and robust assessment of ChIP-seq read distribution using
a strand-shift profile},
journal = {Bioinform.},
volume = {34},
number = {14},
pages = {2356--2363},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty137},
doi = {10.1093/BIOINFORMATICS/BTY137},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NakatoS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NakkenFVAMH18,
author = {Sigve Nakken and
Ghislain Fournous and
Daniel Vod{\'{a}}k and
Lars Birger Aasheim and
Ola Myklebost and
Eivind Hovig},
title = {Personal Cancer Genome Reporter: variant interpretation report for
precision oncology},
journal = {Bioinform.},
volume = {34},
number = {10},
pages = {1778--1780},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx817},
doi = {10.1093/BIOINFORMATICS/BTX817},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NakkenFVAMH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NapolitanoCMPSM18,
author = {Francesco Napolitano and
Diego Carrella and
Barbara Mandriani and
Sandra Pisonero{-}Vaquero and
Francesco Sirci and
Diego L. Medina and
Nicola Brunetti{-}Pierri and
Diego di Bernardo},
title = {gene2drug: a computational tool for pathway-based rational drug repositioning},
journal = {Bioinform.},
volume = {34},
number = {9},
pages = {1498--1505},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx800},
doi = {10.1093/BIOINFORMATICS/BTX800},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NapolitanoCMPSM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NashSFASFR18,
author = {Anthony Nash and
Thomas Sewell and
Rhys A. Farrer and
Alireza Abdolrasouli and
Jennifer M. G. Shelton and
Matthew C. Fisher and
Johanna Rhodes},
title = {MARDy: Mycology Antifungal Resistance Database},
journal = {Bioinform.},
volume = {34},
number = {18},
pages = {3233--3234},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty321},
doi = {10.1093/BIOINFORMATICS/BTY321},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NashSFASFR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NavarroMFC18,
author = {Francisco Abad Navarro and
Mar{\'{\i}}a Eugenia de la Morena{-}Barrio and
Jesualdo Tom{\'{a}}s Fern{\'{a}}ndez{-}Breis and
Javier Corral},
title = {Lost in translation: bioinformatic analysis of variations affecting
the translation initiation codon in the human genome},
journal = {Bioinform.},
volume = {34},
number = {22},
pages = {3788--3794},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty453},
doi = {10.1093/BIOINFORMATICS/BTY453},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NavarroMFC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NeavesTM18,
author = {Samuel R. Neaves and
Sophia Tsoka and
Louise A. C. Millard},
title = {Reactome Pengine: a web-logic {API} to the Homo sapiens reactome},
journal = {Bioinform.},
volume = {34},
number = {16},
pages = {2856--2858},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty181},
doi = {10.1093/BIOINFORMATICS/BTY181},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NeavesTM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NecciPDTT18,
author = {Marco Necci and
Damiano Piovesan and
Zsuzsanna Doszt{\'{a}}nyi and
Peter Tompa and
Silvio C. E. Tosatto},
title = {A comprehensive assessment of long intrinsic protein disorder from
the DisProt database},
journal = {Bioinform.},
volume = {34},
number = {3},
pages = {445--452},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx590},
doi = {10.1093/BIOINFORMATICS/BTX590},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NecciPDTT18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NelsonHDGL18,
author = {Andrew D. L. Nelson and
Asher Haug{-}Baltzell and
Sean Davey and
Brian D. Gregory and
Eric Lyons},
title = {EPIC-CoGe: managing and analyzing genomic data},
journal = {Bioinform.},
volume = {34},
number = {15},
pages = {2651--2653},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty106},
doi = {10.1093/BIOINFORMATICS/BTY106},
timestamp = {Sun, 24 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NelsonHDGL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NelsonSSLPHYOYB18,
author = {Justin Nelson and
Scott W. Simpkins and
Hamid Safizadeh and
Sheena C. Li and
Jeff S. Piotrowski and
Hiroyuki Hirano and
Yoko Yashiroda and
Hiroyuki Osada and
Minoru Yoshida and
Charles Boone and
Chad L. Myers},
title = {{MOSAIC:} a chemical-genetic interaction data repository and web resource
for exploring chemical modes of action},
journal = {Bioinform.},
volume = {34},
number = {7},
pages = {1251--1252},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx732},
doi = {10.1093/BIOINFORMATICS/BTX732},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NelsonSSLPHYOYB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NembriniKW18,
author = {Stefano Nembrini and
Inke R. K{\"{o}}nig and
Marvin N. Wright},
title = {The revival of the Gini importance?},
journal = {Bioinform.},
volume = {34},
number = {21},
pages = {3711--3718},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty373},
doi = {10.1093/BIOINFORMATICS/BTY373},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NembriniKW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NeveuPHMBDBG18,
author = {{\'{E}}milie Neveu and
Petr Popov and
Alexandre Hoffmann and
Angelo Migliosi and
Xavier Besseron and
Gr{\'{e}}goire Danoy and
Pascal Bouvry and
Sergei Grudinin},
title = {RapidRMSD: rapid determination of RMSDs corresponding to motions of
flexible molecules},
journal = {Bioinform.},
volume = {34},
number = {16},
pages = {2757--2765},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty160},
doi = {10.1093/BIOINFORMATICS/BTY160},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NeveuPHMBDBG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NguyenB18,
author = {Phan Nguyen and
Rosemary Braun},
title = {Semi-supervised network inference using simulated gene expression
dynamics},
journal = {Bioinform.},
volume = {34},
number = {7},
pages = {1148--1156},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx748},
doi = {10.1093/BIOINFORMATICS/BTX748},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NguyenB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NguyenCR18,
author = {Hai Nguyen and
David A. Case and
Alexander S. Rose},
title = {NGLview-interactive molecular graphics for Jupyter notebooks},
journal = {Bioinform.},
volume = {34},
number = {7},
pages = {1241--1242},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx789},
doi = {10.1093/BIOINFORMATICS/BTX789},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NguyenCR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NguyenNM18,
author = {Dai Hai Nguyen and
Canh Hao Nguyen and
Hiroshi Mamitsuka},
title = {{SIMPLE:} Sparse Interaction Model over Peaks of moLEcules for fast,
interpretable metabolite identification from tandem mass spectra},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i323--i332},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty252},
doi = {10.1093/BIOINFORMATICS/BTY252},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NguyenNM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NielSDR18,
author = {Cl{\'{e}}ment Niel and
Christine Sinoquet and
Christian Dina and
Ghislain Rocheleau},
title = {{SMMB:} a stochastic Markov blanket framework strategy for epistasis
detection in {GWAS}},
journal = {Bioinform.},
volume = {34},
number = {16},
pages = {2773--2780},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty154},
doi = {10.1093/BIOINFORMATICS/BTY154},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NielSDR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NingWKMZXL18,
author = {Chao Ning and
Dan Wang and
Huimin Kang and
Raphael Mrode and
Lei Zhou and
Shizhong Xu and
Jian{-}Feng Liu},
title = {A rapid epistatic mixed-model association analysis by linear retransformations
of genomic estimated values},
journal = {Bioinform.},
volume = {34},
number = {11},
pages = {1817--1825},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty017},
doi = {10.1093/BIOINFORMATICS/BTY017},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NingWKMZXL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NiuSCCWZZ18,
author = {Jinglong Niu and
Yan Shi and
Maolin Cai and
Zhixin Cao and
Dandan Wang and
Zhaozhi Zhang and
Xiaohua Douglas Zhang},
title = {Detection of sputum by interpreting the time-frequency distribution
of respiratory sound signal using image processing techniques},
journal = {Bioinform.},
volume = {34},
number = {5},
pages = {820--827},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx652},
doi = {10.1093/BIOINFORMATICS/BTX652},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NiuSCCWZZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NortheyBM18,
author = {Thomas C. Northey and
Anja Baresic and
Andrew C. R. Martin},
title = {IntPred: a structure-based predictor of protein-protein interaction
sites},
journal = {Bioinform.},
volume = {34},
number = {2},
pages = {223--229},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx585},
doi = {10.1093/BIOINFORMATICS/BTX585},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NortheyBM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NortonVLGB18,
author = {Scott S. Norton and
Jorge Vaquero{-}Garcia and
Nicholas F. Lahens and
Gregory R. Grant and
Yoseph Barash},
title = {Outlier detection for improved differential splicing quantification
from RNA-Seq experiments with replicates},
journal = {Bioinform.},
volume = {34},
number = {9},
pages = {1488--1497},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx790},
doi = {10.1093/BIOINFORMATICS/BTX790},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NortonVLGB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NouriK18,
author = {Nima Nouri and
Steven H. Kleinstein},
title = {A spectral clustering-based method for identifying clones from high-throughput
{B} cell repertoire sequencing data},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i341--i349},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty235},
doi = {10.1093/BIOINFORMATICS/BTY235},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NouriK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NousiainenKRWLK18,
author = {Kari Nousiainen and
Kartiek Kanduri and
Isis Rica{\~{n}}o{-}Ponce and
Cisca Wijmenga and
Riitta Lahesmaa and
Vinod Kumar and
Harri L{\"{a}}hdesm{\"{a}}ki},
title = {snpEnrichR: analyzing co-localization of SNPs and their proxies in
genomic regions},
journal = {Bioinform.},
volume = {34},
number = {23},
pages = {4112--4114},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty460},
doi = {10.1093/BIOINFORMATICS/BTY460},
timestamp = {Tue, 10 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NousiainenKRWLK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NuedaMMTC18,
author = {Mar{\'{\i}}a Jos{\'{e}} Nueda and
Jordi Martorell{-}Marugan and
Cristina Mart{\'{\i}} and
Sonia Tarazona and
Ana Conesa},
title = {Identification and visualization of differential isoform expression
in RNA-seq time series},
journal = {Bioinform.},
volume = {34},
number = {3},
pages = {524--526},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx578},
doi = {10.1093/BIOINFORMATICS/BTX578},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NuedaMMTC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NumanagicGZBAH18,
author = {Ibrahim Numanagic and
Alim S. G{\"{o}}kkaya and
Lillian Zhang and
Bonnie Berger and
Can Alkan and
Faraz Hach},
title = {Fast characterization of segmental duplications in genome assemblies},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i706--i714},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty586},
doi = {10.1093/BIOINFORMATICS/BTY586},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NumanagicGZBAH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NurminenH18,
author = {Anssi Nurminen and
Vesa P. Hyt{\"{o}}nen},
title = {StructureMapper: a high-throughput algorithm for analyzing protein
sequence locations in structural data},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {2302--2304},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty086},
doi = {10.1093/BIOINFORMATICS/BTY086},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NurminenH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NursimuluXWKP18,
author = {Nirvana Nursimulu and
Leon L. Xu and
James D. Wasmuth and
Ivan Krukov and
John Parkinson},
title = {Improved enzyme annotation with EC-specific cutoffs using {DETECT}
v2},
journal = {Bioinform.},
volume = {34},
number = {19},
pages = {3393--3395},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty368},
doi = {10.1093/BIOINFORMATICS/BTY368},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NursimuluXWKP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ObregonSLCBAC18,
author = {Flavio Pazos Obreg{\'{o}}n and
Pablo Soto and
Jos{\'{e}} Luis Lav{\'{\i}}n and
Ana Rosa Cort{\'{a}}zar and
Rosa Barrio and
Ana Mar{\'{\i}}a Aransay and
Rafael Cantera},
title = {Cluster Locator, online analysis and visualization of gene clustering},
journal = {Bioinform.},
volume = {34},
number = {19},
pages = {3377--3379},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty336},
doi = {10.1093/BIOINFORMATICS/BTY336},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ObregonSLCBAC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OesperDR18,
author = {Layla Oesper and
Simone Dantas and
Benjamin J. Raphael},
title = {Identifying simultaneous rearrangements in cancer genomes},
journal = {Bioinform.},
volume = {34},
number = {2},
pages = {346--352},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx745},
doi = {10.1093/BIOINFORMATICS/BTX745},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OesperDR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OlayanAB18,
author = {Rawan S. Olayan and
Haitham Ashoor and
Vladimir B. Bajic},
title = {{DDR:} efficient computational method to predict drug-target interactions
using graph mining and machine learning approaches},
journal = {Bioinform.},
volume = {34},
number = {7},
pages = {1164--1173},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx731},
doi = {10.1093/BIOINFORMATICS/BTX731},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OlayanAB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OlayanAB18a,
author = {Rawan S. Olayan and
Haitham Ashoor and
Vladimir B. Bajic},
title = {{DDR:} efficient computational method to predict drug-target interactions
using graph mining and machine learning approaches},
journal = {Bioinform.},
volume = {34},
number = {21},
pages = {3779},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty417},
doi = {10.1093/BIOINFORMATICS/BTY417},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OlayanAB18a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OlekhnovichVUKT18,
author = {Evgenii I Olekhnovich and
Artem T. Vasilyev and
Vladimir Ulyantsev and
Elena S. Kostryukova and
Alexander V. Tyakht},
title = {MetaCherchant: analyzing genomic context of antibiotic resistance
genes in gut microbiota},
journal = {Bioinform.},
volume = {34},
number = {3},
pages = {434--444},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx681},
doi = {10.1093/BIOINFORMATICS/BTX681},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OlekhnovichVUKT18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OliveiraD18,
author = {Saulo Henrique Pires de Oliveira and
Charlotte M. Deane},
title = {Combining co-evolution and secondary structure prediction to improve
fragment library generation},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {2219--2227},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty084},
doi = {10.1093/BIOINFORMATICS/BTY084},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OliveiraD18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OliveiraLSD18,
author = {Saulo Henrique Pires de Oliveira and
Eleanor C. Law and
Jiye Shi and
Charlotte M. Deane},
title = {Sequential search leads to faster, more efficient fragment-based de
novo protein structure prediction},
journal = {Bioinform.},
volume = {34},
number = {7},
pages = {1132--1140},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx722},
doi = {10.1093/BIOINFORMATICS/BTX722},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OliveiraLSD18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OprisanuC18,
author = {Bristena Oprisanu and
Emiliano De Cristofaro},
title = {AnoniMME: bringing anonymity to the Matchmaker Exchange platform for
rare disease gene discovery},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i160--i168},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty269},
doi = {10.1093/BIOINFORMATICS/BTY269},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OprisanuC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OrakovSSG18,
author = {Askarbek N. Orakov and
Nazgul Sakenova and
Anatoly A. Sorokin and
Igor Goryanin},
title = {{ASAR:} visual analysis of metagenomes in {R}},
journal = {Bioinform.},
volume = {34},
number = {8},
pages = {1404--1405},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx775},
doi = {10.1093/BIOINFORMATICS/BTX775},
timestamp = {Mon, 26 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/OrakovSSG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OrzechowskiPHM18,
author = {Patryk Orzechowski and
Artur Panszczyk and
Xiuzhen Huang and
Jason H. Moore},
title = {runibic: a Bioconductor package for parallel row-based biclustering
of gene expression data},
journal = {Bioinform.},
volume = {34},
number = {24},
pages = {4302--4304},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty512},
doi = {10.1093/BIOINFORMATICS/BTY512},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/OrzechowskiPHM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OrzechowskiSHM18,
author = {Patryk Orzechowski and
Moshe Sipper and
Xiuzhen Huang and
Jason H. Moore},
title = {{EBIC:} an evolutionary-based parallel biclustering algorithm for
pattern discovery},
journal = {Bioinform.},
volume = {34},
number = {21},
pages = {3719--3726},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty401},
doi = {10.1093/BIOINFORMATICS/BTY401},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OrzechowskiSHM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OuelletteRBB18,
author = {Lisa A. Ouellette and
Robert W. Reid and
Steven G. Blanchard and
Cory R. Brouwer},
title = {LinkageMapView - rendering high-resolution linkage and {QTL} maps},
journal = {Bioinform.},
volume = {34},
number = {2},
pages = {306--307},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx576},
doi = {10.1093/BIOINFORMATICS/BTX576},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/OuelletteRBB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OzdemirGK18,
author = {E. Sila Ozdemir and
Attila G{\"{u}}rsoy and
Ozlem Keskin},
title = {Analysis of single amino acid variations in singlet hot spots of protein-protein
interfaces},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i795--i801},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty569},
doi = {10.1093/BIOINFORMATICS/BTY569},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OzdemirGK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OzturkOO18,
author = {Hakime {\"{O}}zt{\"{u}}rk and
Elif {\"{O}}zkirimli {\"{O}}lmez and
Arzucan {\"{O}}zg{\"{u}}r},
title = {A novel methodology on distributed representations of proteins using
their interacting ligands},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i295--i303},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty287},
doi = {10.1093/BIOINFORMATICS/BTY287},
timestamp = {Tue, 12 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OzturkOO18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OzturkOO18a,
author = {Hakime {\"{O}}zt{\"{u}}rk and
Arzucan {\"{O}}zg{\"{u}}r and
Elif {\"{O}}zkirimli {\"{O}}lmez},
title = {DeepDTA: deep drug-target binding affinity prediction},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i821--i829},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty593},
doi = {10.1093/BIOINFORMATICS/BTY593},
timestamp = {Tue, 12 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OzturkOO18a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PageaudPA18,
author = {Yoann Pageaud and
Christoph Plass and
Yassen Assenov},
title = {Enrichment analysis with EpiAnnotator},
journal = {Bioinform.},
volume = {34},
number = {10},
pages = {1781--1783},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty007},
doi = {10.1093/BIOINFORMATICS/BTY007},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PageaudPA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PajaroOVA18,
author = {Manuel P{\'{a}}jaro and
Irene Otero{-}Muras and
Carlos V{\'{a}}zquez and
Antonio A. Alonso},
title = {{SELANSI:} a toolbox for simulation of stochastic gene regulatory
networks},
journal = {Bioinform.},
volume = {34},
number = {5},
pages = {893--895},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx645},
doi = {10.1093/BIOINFORMATICS/BTX645},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PajaroOVA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Palarea-Albaladejo18,
author = {Javier Palarea{-}Albaladejo and
Kevin McLean and
Frank Wright and
David G. E. Smith},
title = {MALDIrppa: quality control and robust analysis for mass spectrometry
data},
journal = {Bioinform.},
volume = {34},
number = {3},
pages = {522--523},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx628},
doi = {10.1093/BIOINFORMATICS/BTX628},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Palarea-Albaladejo18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PalmerPFA18,
author = {Andrew Palmer and
Prasad Phapale and
Dominik Fay and
Theodore Alexandrov},
title = {Curatr: a web application for creating, curating and sharing a mass
spectral library},
journal = {Bioinform.},
volume = {34},
number = {8},
pages = {1436--1438},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx786},
doi = {10.1093/BIOINFORMATICS/BTX786},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PalmerPFA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PanS18,
author = {Xiaoyong Pan and
Hong{-}Bin Shen},
title = {Predicting RNA-protein binding sites and motifs through combining
local and global deep convolutional neural networks},
journal = {Bioinform.},
volume = {34},
number = {20},
pages = {3427--3436},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty364},
doi = {10.1093/BIOINFORMATICS/BTY364},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PanS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PanWAJL18,
author = {Weihua Pan and
Steve Wanamaker and
Audrey M. V. Ah{-}Fong and
Howard S. Judelson and
Stefano Lonardi},
title = {Novo{\&}Stitch: accurate reconciliation of genome assemblies via
optical maps},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i43--i51},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty255},
doi = {10.1093/BIOINFORMATICS/BTY255},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PanWAJL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PanWZD18,
author = {Yuliang Pan and
Zixiang Wang and
Weihua Zhan and
Lei Deng},
title = {Computational identification of binding energy hot spots in protein-RNA
complexes using an ensemble approach},
journal = {Bioinform.},
volume = {34},
number = {9},
pages = {1473--1480},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx822},
doi = {10.1093/BIOINFORMATICS/BTX822},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PanWZD18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PandeyBJP18,
author = {Prashant Pandey and
Michael A. Bender and
Rob Johnson and
Rob Patro},
title = {Squeakr: an exact and approximate k-mer counting system},
journal = {Bioinform.},
volume = {34},
number = {4},
pages = {568--575},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx636},
doi = {10.1093/BIOINFORMATICS/BTX636},
timestamp = {Mon, 22 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PandeyBJP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PanjkovichS18,
author = {Alejandro Panjkovich and
Dmitri I. Svergun},
title = {{CHROMIXS:} automatic and interactive analysis of chromatography-coupled
small-angle X-ray scattering data},
journal = {Bioinform.},
volume = {34},
number = {11},
pages = {1944--1946},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx846},
doi = {10.1093/BIOINFORMATICS/BTX846},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PanjkovichS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ParagP18,
author = {Kris V. Parag and
Oliver G. Pybus},
title = {Exact Bayesian inference for phylogenetic birth-death models},
journal = {Bioinform.},
volume = {34},
number = {21},
pages = {3638--3645},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty337},
doi = {10.1093/BIOINFORMATICS/BTY337},
timestamp = {Thu, 28 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ParagP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ParidaensWNL18,
author = {Tom Paridaens and
Glenn Van Wallendael and
Wesley De Neve and
Peter Lambert},
title = {AQUa: an adaptive framework for compression of sequencing quality
scores with random access functionality},
journal = {Bioinform.},
volume = {34},
number = {3},
pages = {425--433},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx607},
doi = {10.1093/BIOINFORMATICS/BTX607},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ParidaensWNL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ParkB18,
author = {Jeongbin Park and
Sangsu Bae},
title = {Cpf1-Database: web-based genome-wide guide {RNA} library design for
gene knockout screens using CRISPR-Cpf1},
journal = {Bioinform.},
volume = {34},
number = {6},
pages = {1077--1079},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx695},
doi = {10.1093/BIOINFORMATICS/BTX695},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ParkB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ParkLKL18,
author = {Sung Yong Park and
Tanzy M. T. Love and
Shivankur Kapoor and
Ha Youn Lee},
title = {{HIITE:} {HIV-1} incidence and infection time estimator},
journal = {Bioinform.},
volume = {34},
number = {12},
pages = {2046--2052},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty073},
doi = {10.1093/BIOINFORMATICS/BTY073},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ParkLKL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ParkZ18,
author = {Seyoung Park and
Hongyu Zhao},
title = {Spectral clustering based on learning similarity matrix},
journal = {Bioinform.},
volume = {34},
number = {12},
pages = {2069--2076},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty050},
doi = {10.1093/BIOINFORMATICS/BTY050},
timestamp = {Thu, 28 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ParkZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Parks18,
author = {Matthew M. Parks},
title = {An exact test for comparing a fixed quantitative property between
gene sets},
journal = {Bioinform.},
volume = {34},
number = {6},
pages = {971--977},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx693},
doi = {10.1093/BIOINFORMATICS/BTX693},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Parks18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Patel18,
author = {Mitulkumar V. Patel},
title = {iS-CellR: a user-friendly tool for analyzing and visualizing single-cell
{RNA} sequencing data},
journal = {Bioinform.},
volume = {34},
number = {24},
pages = {4305--4306},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty517},
doi = {10.1093/BIOINFORMATICS/BTY517},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Patel18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PatkarS18,
author = {Sushant Patkar and
Roded Sharan},
title = {An optimization framework for network annotation},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i502--i508},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty236},
doi = {10.1093/BIOINFORMATICS/BTY236},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PatkarS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PedersenQ18,
author = {Brent S. Pedersen and
Aaron R. Quinlan},
title = {Mosdepth: quick coverage calculation for genomes and exomes},
journal = {Bioinform.},
volume = {34},
number = {5},
pages = {867--868},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx699},
doi = {10.1093/BIOINFORMATICS/BTX699},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PedersenQ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PedersenQ18a,
author = {Brent S. Pedersen and
Aaron R. Quinlan},
title = {hts-nim: scripting high-performance genomic analyses},
journal = {Bioinform.},
volume = {34},
number = {19},
pages = {3387--3389},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty358},
doi = {10.1093/BIOINFORMATICS/BTY358},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PedersenQ18a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PedregalM18,
author = {Jaime Rodr{\'{\i}}guez{-}Guerra Pedregal and
Jean{-}Didier Mar{\'{e}}chal},
title = {PyChimera: use {UCSF} Chimera modules in any Python 2.7 project},
journal = {Bioinform.},
volume = {34},
number = {10},
pages = {1784--1785},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty021},
doi = {10.1093/BIOINFORMATICS/BTY021},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PedregalM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PenfoldSRHWGGS18,
author = {Christopher A. Penfold and
Anastasiya Sybirna and
John E. Reid and
Yun Huang and
Lorenz Wernisch and
Zoubin Ghahramani and
Murray Grant and
M. Azim Surani},
title = {Branch-recombinant Gaussian processes for analysis of perturbations
in biological time series},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i1005--i1013},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty603},
doi = {10.1093/BIOINFORMATICS/BTY603},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PenfoldSRHWGGS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PengJR18,
author = {Yisu Peng and
Yuxiang Jiang and
Predrag Radivojac},
title = {Enumerating consistent sub-graphs of directed acyclic graphs: an insight
into biomedical ontologies},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i313--i322},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty268},
doi = {10.1093/BIOINFORMATICS/BTY268},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PengJR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PengMO18,
author = {Jianhao Peng and
Olgica Milenkovic and
Idoia Ochoa},
title = {{METHCOMP:} a special purpose compression platform for {DNA} methylation
data},
journal = {Bioinform.},
volume = {34},
number = {15},
pages = {2654--2656},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty143},
doi = {10.1093/BIOINFORMATICS/BTY143},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PengMO18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PengSJLA18,
author = {Yunhui Peng and
Lexuan Sun and
Zhe Jia and
Lin Li and
Emil Alexov},
title = {Predicting protein-DNA binding free energy change upon missense mutations
using modified {MM/PBSA} approach: {SAMPDI} webserver},
journal = {Bioinform.},
volume = {34},
number = {5},
pages = {779--786},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx698},
doi = {10.1093/BIOINFORMATICS/BTX698},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PengSJLA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PengWMLWMCDW18,
author = {Bo Peng and
Gao Wang and
Jun Ma and
Man Chong Leong and
Chris Wakefield and
James M. Melott and
Yulun Chiu and
Di Du and
John N. Weinstein},
title = {SoS Notebook: an interactive multi-language data analysis environment},
journal = {Bioinform.},
volume = {34},
number = {21},
pages = {3768--3770},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty405},
doi = {10.1093/BIOINFORMATICS/BTY405},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PengWMLWMCDW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PengZBTL18,
author = {Hui Peng and
Yi Zheng and
Michael Blumenstein and
Dacheng Tao and
Jinyan Li},
title = {CRISPR/Cas9 cleavage efficiency regression through boosting algorithms
and Markov sequence profiling},
journal = {Bioinform.},
volume = {34},
number = {18},
pages = {3069--3077},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty298},
doi = {10.1093/BIOINFORMATICS/BTY298},
timestamp = {Fri, 16 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PengZBTL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PengZZLL18,
author = {Hui Peng and
Yi Zheng and
Zhixun Zhao and
Tao Liu and
Jinyan Li},
title = {Recognition of CRISPR/Cas9 off-target sites through ensemble learning
of uneven mismatch distributions},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i757--i765},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty558},
doi = {10.1093/BIOINFORMATICS/BTY558},
timestamp = {Fri, 16 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PengZZLL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PerchaA18,
author = {Bethany Percha and
Russ B. Altman},
title = {A global network of biomedical relationships derived from text},
journal = {Bioinform.},
volume = {34},
number = {15},
pages = {2614--2624},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty114},
doi = {10.1093/BIOINFORMATICS/BTY114},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PerchaA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PereiraL18,
author = {Joana Pereira and
Andrei N. Lupas},
title = {The ancestral {KH} peptide at the root of a domain family with three
different folds},
journal = {Bioinform.},
volume = {34},
number = {23},
pages = {3961--3965},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty480},
doi = {10.1093/BIOINFORMATICS/BTY480},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PereiraL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Perez-BenitoHML18,
author = {Laura P{\'{e}}rez{-}Benito and
Andrew Henry and
Minos{-}Timotheos Matsoukas and
Laura Lopez and
Daniel Pulido and
Miriam Royo and
Arnau Cordom{\'{\i}} and
Gary Tresadern and
Leonardo Pardo},
title = {The size matters? {A} computational tool to design bivalent ligands},
journal = {Bioinform.},
volume = {34},
number = {22},
pages = {3857--3863},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty422},
doi = {10.1093/BIOINFORMATICS/BTY422},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Perez-BenitoHML18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Perez-SilvaAQ18,
author = {Jos{\'{e}} G. P{\'{e}}rez{-}Silva and
Miguel Araujo{-}Voces and
V{\'{\i}}ctor Quesada},
title = {nVenn: generalized, quasi-proportional Venn and Euler diagrams},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {2322--2324},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty109},
doi = {10.1093/BIOINFORMATICS/BTY109},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Perez-SilvaAQ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PericardDCBT18,
author = {Pierre Pericard and
Yoann Dufresne and
Lo{\"{\i}}c Couderc and
Samuel Blanquart and
H{\'{e}}l{\`{e}}ne Touzet},
title = {{MATAM:} reconstruction of phylogenetic marker genes from short sequencing
reads in metagenomes},
journal = {Bioinform.},
volume = {34},
number = {4},
pages = {585--591},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx644},
doi = {10.1093/BIOINFORMATICS/BTX644},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PericardDCBT18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PessiaC18,
author = {Alberto Pessia and
Jukka Corander},
title = {Kpax3: Bayesian bi-clustering of large sequence datasets},
journal = {Bioinform.},
volume = {34},
number = {12},
pages = {2132--2133},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty056},
doi = {10.1093/BIOINFORMATICS/BTY056},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PessiaC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PetraliaWPYZW18,
author = {Francesca Petralia and
Li Wang and
Jie Peng and
Arthur Yan and
Jun Zhu and
Pei Wang},
title = {A new method for constructing tumor specific gene co-expression networks
based on samples with tumor purity heterogeneity},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i528--i536},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty280},
doi = {10.1093/BIOINFORMATICS/BTY280},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PetraliaWPYZW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PetrilloRCG18,
author = {Umberto Ferraro Petrillo and
Gianluca Roscigno and
Giuseppe Cattaneo and
Raffaele Giancarlo},
title = {Informational and linguistic analysis of large genomic sequence collections
via efficient Hadoop cluster algorithms},
journal = {Bioinform.},
volume = {34},
number = {11},
pages = {1826--1833},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty018},
doi = {10.1093/BIOINFORMATICS/BTY018},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PetrilloRCG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Peyvandi-PourSS18,
author = {Azam Peyvandi{-}Pour and
Nafiseh Saberian and
Adib Shafi and
Michele Donato and
Sorin Draghici},
title = {A novel computational approach for drug repurposing using systems
biology},
journal = {Bioinform.},
volume = {34},
number = {16},
pages = {2817--2825},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty133},
doi = {10.1093/BIOINFORMATICS/BTY133},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Peyvandi-PourSS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PfeiferL18,
author = {Bastian Pfeifer and
Martin J. Lercher},
title = {BlockFeST: Bayesian calculation of region-specific {FST} to detect
local adaptation},
journal = {Bioinform.},
volume = {34},
number = {18},
pages = {3205--3207},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty299},
doi = {10.1093/BIOINFORMATICS/BTY299},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PfeiferL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PflugH18,
author = {Florian G. Pflug and
Arndt von Haeseler},
title = {TRUmiCount: correctly counting absolute numbers of molecules using
unique molecular identifiers},
journal = {Bioinform.},
volume = {34},
number = {18},
pages = {3137--3144},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty283},
doi = {10.1093/BIOINFORMATICS/BTY283},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PflugH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Picart-ArmadaTB18,
author = {Sergio Picart{-}Armada and
Wesley K. Thompson and
Alfonso Buil and
Alexandre Perera{-}Lluna},
title = {diffuStats: an {R} package to compute diffusion-based scores on biological
networks},
journal = {Bioinform.},
volume = {34},
number = {3},
pages = {533--534},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx632},
doi = {10.1093/BIOINFORMATICS/BTX632},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Picart-ArmadaTB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PiccoloWCBCS18,
author = {Brian D. Piccolo and
Umesh D. Wankhade and
Sree V. Chintapalli and
Sudeepa Bhattacharyya and
Luo Chunqiao and
Kartik Shankar},
title = {Dynamic assessment of microbial ecology {(DAME):} a web app for interactive
analysis and visualization of microbial sequencing data},
journal = {Bioinform.},
volume = {34},
number = {6},
pages = {1050--1052},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx686},
doi = {10.1093/BIOINFORMATICS/BTX686},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PiccoloWCBCS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PietrosantoACAF18,
author = {Marco Pietrosanto and
Marta Adinolfi and
Riccardo Casula and
Gabriele Ausiello and
Fabrizio Ferr{\`{e}} and
Manuela Helmer{-}Citterich},
title = {{BEAM} web server: a tool for structural {RNA} motif discovery},
journal = {Bioinform.},
volume = {34},
number = {6},
pages = {1058--1060},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx704},
doi = {10.1093/BIOINFORMATICS/BTX704},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PietrosantoACAF18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PinedaCKKTLNHSC18,
author = {Sandy S. Pineda and
Pierre{-}Alain Chaumeil and
Anne Kunert and
Quentin Kaas and
Mike W. C. Thang and
Lien Le and
Michael Nuhn and
Volker Herzig and
Natalie J. Saez and
Ben Cristofori{-}Armstrong and
Raveendra Anangi and
Sebastian Senff and
Dominique Gorse and
Glenn F. King},
title = {ArachnoServer 3.0: an online resource for automated discovery, analysis
and annotation of spider toxins},
journal = {Bioinform.},
volume = {34},
number = {6},
pages = {1074--1076},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx661},
doi = {10.1093/BIOINFORMATICS/BTX661},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PinedaCKKTLNHSC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PinelloFY18,
author = {Luca Pinello and
Rick Farouni and
Guo{-}Cheng Yuan},
title = {Haystack: systematic analysis of the variation of epigenetic states
and cell-type specific regulatory elements},
journal = {Bioinform.},
volume = {34},
number = {11},
pages = {1930--1933},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty031},
doi = {10.1093/BIOINFORMATICS/BTY031},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PinelloFY18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PinoCPT18,
author = {Sergio D{\'{\i}}az Del Pino and
Juan Falgueras Cano and
Esteban P{\'{e}}rez{-}Wohlfeil and
Oswaldo Trelles},
title = {mORCA: sailing bioinformatics world with mobile devices},
journal = {Bioinform.},
volume = {34},
number = {5},
pages = {869--870},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx673},
doi = {10.1093/BIOINFORMATICS/BTX673},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PinoCPT18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PinsonPCAV18,
author = {Marie{-}Elisa Pinson and
Romain Pogorelcnik and
Franck Court and
Philippe Arnaud and
Catherine Vaurs{-}Barri{\`{e}}re},
title = {CLIFinder: identification of {LINE-1} chimeric transcripts in RNA-seq
data},
journal = {Bioinform.},
volume = {34},
number = {4},
pages = {688--690},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx671},
doi = {10.1093/BIOINFORMATICS/BTX671},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PinsonPCAV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PiovesanT18,
author = {Damiano Piovesan and
Silvio C. E. Tosatto},
title = {Mobi 2.0: an improved method to define intrinsic disorder, mobility
and linear binding regions in protein structures},
journal = {Bioinform.},
volume = {34},
number = {1},
pages = {122--123},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx592},
doi = {10.1093/BIOINFORMATICS/BTX592},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PiovesanT18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PirklB18,
author = {Martin Pirkl and
Niko Beerenwinkel},
title = {Single cell network analysis with a mixture of Nested Effects Models},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i964--i971},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty602},
doi = {10.1093/BIOINFORMATICS/BTY602},
timestamp = {Thu, 23 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PirklB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PischelSF18,
author = {Dennis Pischel and
Kai Sundmacher and
Robert J. Flassig},
title = {Efficient simulation of intrinsic, extrinsic and external noise in
biochemical systems},
journal = {Bioinform.},
volume = {34},
number = {16},
pages = {2880},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty171},
doi = {10.1093/BIOINFORMATICS/BTY171},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PischelSF18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PlatonZBT18,
author = {Ludovic Platon and
Farida Zehraoui and
Abdelhafid Bendahmane and
Fariza Tahi},
title = {IRSOM, a reliable identifier of ncRNAs based on supervised self-organizing
maps with rejection},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i620--i628},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty572},
doi = {10.1093/BIOINFORMATICS/BTY572},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PlatonZBT18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PolanskiGMBODW18,
author = {Krzysztof Polanski and
Bo Gao and
Sam A. Mason and
Paul Brown and
Sascha Ott and
Katherine J. Denby and
David L. Wild},
title = {Bringing numerous methods for expression and promoter analysis to
a public cloud computing service},
journal = {Bioinform.},
volume = {34},
number = {5},
pages = {884--886},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx692},
doi = {10.1093/BIOINFORMATICS/BTX692},
timestamp = {Thu, 18 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PolanskiGMBODW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PoleksicX18,
author = {Aleksandar Poleksic and
Lei Xie},
title = {Predicting serious rare adverse reactions of novel chemicals},
journal = {Bioinform.},
volume = {34},
number = {16},
pages = {2835--2842},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty193},
doi = {10.1093/BIOINFORMATICS/BTY193},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PoleksicX18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PouyanK18,
author = {Maziyar Baran Pouyan and
Dennis Kostka},
title = {Random forest based similarity learning for single cell {RNA} sequencing
data},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i79--i88},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty260},
doi = {10.1093/BIOINFORMATICS/BTY260},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PouyanK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PowersGPTC18,
author = {Rani K. Powers and
Andrew Goodspeed and
Harrison Pielke{-}Lombardo and
Aik Choon Tan and
James C. Costello},
title = {GSEA-InContext: identifying novel and common patterns in expression
experiments},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i555--i564},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty271},
doi = {10.1093/BIOINFORMATICS/BTY271},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PowersGPTC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PratapaABFTPM18,
author = {Aditya Pratapa and
Neil Adames and
Pavel K. Brazhnik and
Nicholas Franzese and
John J. Tyson and
Jean Peccoud and
T. M. Murali},
title = {CrossPlan: systematic planning of genetic crosses to validate mathematical
models},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {2237--2244},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty072},
doi = {10.1093/BIOINFORMATICS/BTY072},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PratapaABFTPM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PreuerLHBBK18,
author = {Kristina Preuer and
Richard P. I. Lewis and
Sepp Hochreiter and
Andreas Bender and
Krishna C. Bulusu and
G{\"{u}}nter Klambauer},
title = {DeepSynergy: predicting anti-cancer drug synergy with Deep Learning},
journal = {Bioinform.},
volume = {34},
number = {9},
pages = {1538--1546},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx806},
doi = {10.1093/BIOINFORMATICS/BTX806},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PreuerLHBBK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PriveAZB18,
author = {Florian Priv{\'{e}} and
Hugues Aschard and
Andrey Ziyatdinov and
Michael G. B. Blum},
title = {Efficient analysis of large-scale genome-wide data with two {R} packages:
bigstatsr and bigsnpr},
journal = {Bioinform.},
volume = {34},
number = {16},
pages = {2781--2787},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty185},
doi = {10.1093/BIOINFORMATICS/BTY185},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PriveAZB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ProbstR18,
author = {Daniel Probst and
Jean{-}Louis Reymond},
title = {FUn: a framework for interactive visualizations of large, high-dimensional
datasets on the web},
journal = {Bioinform.},
volume = {34},
number = {8},
pages = {1433--1435},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx760},
doi = {10.1093/BIOINFORMATICS/BTX760},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ProbstR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Prufer18,
author = {Kay Pr{\"{u}}fer},
title = {snpAD: an ancient {DNA} genotype caller},
journal = {Bioinform.},
volume = {34},
number = {24},
pages = {4165--4171},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty507},
doi = {10.1093/BIOINFORMATICS/BTY507},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Prufer18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PucciBKR18,
author = {Fabrizio Pucci and
Katrien V. Bernaerts and
Jean Marc Kwasigroch and
Marianne Rooman},
title = {Quantification of biases in predictions of protein stability changes
upon mutations},
journal = {Bioinform.},
volume = {34},
number = {21},
pages = {3659--3665},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty348},
doi = {10.1093/BIOINFORMATICS/BTY348},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PucciBKR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PuigdevallC18,
author = {Pau Puigdevall and
Robert Castelo},
title = {GenomicScores: seamless access to genomewide position-specific scores
from {R} and Bioconductor},
journal = {Bioinform.},
volume = {34},
number = {18},
pages = {3208--3210},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty311},
doi = {10.1093/BIOINFORMATICS/BTY311},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PuigdevallC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/QuangGP18,
author = {Daniel Quang and
Yuanfang Guan and
Stephen C. J. Parker},
title = {{YAMDA:} thousandfold speedup of EM-based motif discovery using deep
learning libraries and {GPU}},
journal = {Bioinform.},
volume = {34},
number = {20},
pages = {3578--3580},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty396},
doi = {10.1093/BIOINFORMATICS/BTY396},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/QuangGP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/QuinnERC18,
author = {Thomas P. Quinn and
Ionas Erb and
Mark F. Richardson and
Tamsyn M. Crowley},
title = {Understanding sequencing data as compositions: an outlook and review},
journal = {Bioinform.},
volume = {34},
number = {16},
pages = {2870--2878},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty175},
doi = {10.1093/BIOINFORMATICS/BTY175},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/QuinnERC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RaghupathyCVBSM18,
author = {Narayanan Raghupathy and
Kwangbom Choi and
Matthew J. Vincent and
Glen L. Beane and
Keith S. Sheppard and
Steven C. Munger and
Ron Korstanje and
Fernando Pardo{-}Manual de Villena and
Gary A. Churchill},
title = {Hierarchical analysis of RNA-seq reads improves the accuracy of allele-specific
expression},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {2177--2184},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty078},
doi = {10.1093/BIOINFORMATICS/BTY078},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RaghupathyCVBSM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RahimiG18,
author = {Arezou Rahimi and
Mehmet G{\"{o}}nen},
title = {Discriminating early- and late-stage cancers using multiple kernel
learning on gene sets},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i412--i421},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty239},
doi = {10.1093/BIOINFORMATICS/BTY239},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RahimiG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RahnBCEHR18,
author = {Ren{\'{e}} Rahn and
Stefan Budach and
Pascal Costanza and
Marcel Ehrhardt and
Jonny Hancox and
Knut Reinert},
title = {Generic accelerated sequence alignment in SeqAn using vectorization
and multi-threading},
journal = {Bioinform.},
volume = {34},
number = {20},
pages = {3437--3445},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty380},
doi = {10.1093/BIOINFORMATICS/BTY380},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RahnBCEHR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RaimondiOMV18,
author = {Daniele Raimondi and
Gabriele Orlando and
Yves Moreau and
Wim F. Vranken},
title = {Ultra-fast global homology detection with Discrete Cosine Transform
and Dynamic Time Warping},
journal = {Bioinform.},
volume = {34},
number = {18},
pages = {3118--3125},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty309},
doi = {10.1093/BIOINFORMATICS/BTY309},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RaimondiOMV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RamakerGC18,
author = {Ryne C. Ramaker and
Emily R. Gordon and
Sara J. Cooper},
title = {{R2DGC:} threshold-free peak alignment and identification for 2D gas
chromatography-mass spectrometry in {R}},
journal = {Bioinform.},
volume = {34},
number = {10},
pages = {1789--1791},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx825},
doi = {10.1093/BIOINFORMATICS/BTX825},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RamakerGC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RamirezM18,
author = {Carlos Ram{\'{\i}}rez and
Luis Mendoza},
title = {Phenotypic stability and plasticity in GMP-derived cells as determined
by their underlying regulatory network},
journal = {Bioinform.},
volume = {34},
number = {7},
pages = {1174--1182},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx736},
doi = {10.1093/BIOINFORMATICS/BTX736},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RamirezM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RangavittalHCTC18,
author = {Samarth Rangavittal and
Robert S. Harris and
Monika Cechova and
Marta Tomaszkiewicz and
Rayan Chikhi and
Kateryna D. Makova and
Paul Medvedev},
title = {RecoverY: k-mer-based read classification for Y-chromosome-specific
sequencing and assembly},
journal = {Bioinform.},
volume = {34},
number = {7},
pages = {1125--1131},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx771},
doi = {10.1093/BIOINFORMATICS/BTX771},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RangavittalHCTC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RaoZXM18,
author = {R. Shyama Prasad Rao and
Ning Zhang and
Dong Xu and
Ian Max M{\o}ller},
title = {CarbonylDB: a curated data-resource of protein carbonylation sites},
journal = {Bioinform.},
volume = {34},
number = {14},
pages = {2518--2520},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty123},
doi = {10.1093/BIOINFORMATICS/BTY123},
timestamp = {Tue, 02 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RaoZXM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RavanmehrKWM18,
author = {Vida Ravanmehr and
Minji Kim and
Zhiying Wang and
Olgica Milenkovic},
title = {ChIPWig: a random access-enabling lossless and lossy compression method
for ChIP-seq data},
journal = {Bioinform.},
volume = {34},
number = {6},
pages = {911--919},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx685},
doi = {10.1093/BIOINFORMATICS/BTX685},
timestamp = {Tue, 29 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RavanmehrKWM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RavasioRLG18,
author = {Viola Ravasio and
Marco Ritelli and
Andrea Legati and
Edoardo Giacopuzzi},
title = {{GARFIELD-NGS:} Genomic vARiants FIltering by dEep Learning moDels
in {NGS}},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {3038--3040},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty303},
doi = {10.1093/BIOINFORMATICS/BTY303},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RavasioRLG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RawiMKSKC18,
author = {Reda Rawi and
Raghvendra Mall and
Khalid Kunji and
Chen{-}Hsiang Shen and
Peter D. Kwong and
Gwo{-}Yu Chuang},
title = {PaRSnIP: sequence-based protein solubility prediction using gradient
boosting machine},
journal = {Bioinform.},
volume = {34},
number = {7},
pages = {1092--1098},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx662},
doi = {10.1093/BIOINFORMATICS/BTX662},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RawiMKSKC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RazbanGDSDCPS18,
author = {Rostam M. Razban and
Amy I Gilson and
Niamh Durfee and
Hendrik Strobelt and
Kasper Dinkla and
Jeong{-}Mo Choi and
Hanspeter Pfister and
Eugene I. Shakhnovich},
title = {ProteomeVis: a web app for exploration of protein properties from
structure to sequence evolution across organisms' proteomes},
journal = {Bioinform.},
volume = {34},
number = {20},
pages = {3557--3565},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty370},
doi = {10.1093/BIOINFORMATICS/BTY370},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RazbanGDSDCPS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RazbanGDSDCPS18a,
author = {Rostam M. Razban and
Amy I Gilson and
Niamh Durfee and
Hendrik Strobelt and
Kasper Dinkla and
Jeong{-}Mo Choi and
Hanspeter Pfister and
Eugene I. Shakhnovich},
title = {ProteomeVis: a web app for exploration of protein properties from
structure to sequence evolution across organisms' proteomes},
journal = {Bioinform.},
volume = {34},
number = {23},
pages = {4140},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty516},
doi = {10.1093/BIOINFORMATICS/BTY516},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RazbanGDSDCPS18a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Renaud18,
author = {Gabriel Renaud},
title = {glactools: a command-line toolset for the management of genotype likelihoods
and allele counts},
journal = {Bioinform.},
volume = {34},
number = {8},
pages = {1398--1400},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx749},
doi = {10.1093/BIOINFORMATICS/BTX749},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Renaud18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ReynaLR18,
author = {Matthew A. Reyna and
Mark D. M. Leiserson and
Benjamin J. Raphael},
title = {Hierarchical HotNet: identifying hierarchies of altered subnetworks},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i972--i980},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty613},
doi = {10.1093/BIOINFORMATICS/BTY613},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ReynaLR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RimonR18,
author = {Oded Rimon and
Dana Reichmann},
title = {Kfits: a software framework for fitting and cleaning outliers in kinetic
measurements},
journal = {Bioinform.},
volume = {34},
number = {1},
pages = {129--130},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx577},
doi = {10.1093/BIOINFORMATICS/BTX577},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RimonR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RiosKL18,
author = {Anthony Rios and
Ramakanth Kavuluru and
Zhiyong Lu},
title = {Generalizing biomedical relation classification with neural adversarial
domain adaptation},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {2973--2981},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty190},
doi = {10.1093/BIOINFORMATICS/BTY190},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RiosKL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RizzettoKSSRCLE18,
author = {Simone Rizzetto and
David N. P. Koppstein and
Jerome Samir and
Mandeep Singh and
Joanne H. Reed and
Curtis H. Cai and
Andrew R. Lloyd and
Auda A. Eltahla and
Christopher C. Goodnow and
Fabio Luciani},
title = {B-cell receptor reconstruction from single-cell RNA-seq with VDJPuzzle},
journal = {Bioinform.},
volume = {34},
number = {16},
pages = {2846--2847},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty203},
doi = {10.1093/BIOINFORMATICS/BTY203},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RizzettoKSSRCLE18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Roberson18,
author = {Elisha D. Roberson},
title = {Motif scraper: a cross-platform, open-source tool for identifying
degenerate nucleotide motif matches in {FASTA} files},
journal = {Bioinform.},
volume = {34},
number = {22},
pages = {3926--3928},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty437},
doi = {10.1093/BIOINFORMATICS/BTY437},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Roberson18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RobinsonC18,
author = {Sean Robinson and
Michael Courtney},
title = {Spatial quantification of the synaptic activity phenotype across large
populations of neurons with Markov random fields},
journal = {Bioinform.},
volume = {34},
number = {18},
pages = {3196--3204},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty322},
doi = {10.1093/BIOINFORMATICS/BTY322},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RobinsonC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Rodriguez-Martinez18,
author = {Andrea Rodriguez{-}Martinez and
Joram M. Posma and
Rafael Ayala and
Ana Lu{\'{\i}}sa Neves and
Maryam Anwar and
Enrico Petretto and
Costanza Emanueli and
Dominique Gauguier and
Jeremy K. Nicholson and
Marc{-}Emmanuel Dumas},
title = {MWASTools: an R/bioconductor package for metabolome-wide association
studies},
journal = {Bioinform.},
volume = {34},
number = {5},
pages = {890--892},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx477},
doi = {10.1093/BIOINFORMATICS/BTX477},
timestamp = {Sun, 01 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Rodriguez-Martinez18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RogersSMCGC18,
author = {Mark F. Rogers and
Hashem A. Shihab and
Matthew E. Mort and
David N. Cooper and
Tom R. Gaunt and
Colin Campbell},
title = {{FATHMM-XF:} accurate prediction of pathogenic point mutations via
extended features},
journal = {Bioinform.},
volume = {34},
number = {3},
pages = {511--513},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx536},
doi = {10.1093/BIOINFORMATICS/BTX536},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RogersSMCGC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RoguskiOHD18,
author = {Lukasz Roguski and
Idoia Ochoa and
Mikel Hernaez and
Sebastian Deorowicz},
title = {FaStore: a space-saving solution for raw sequencing data},
journal = {Bioinform.},
volume = {34},
number = {16},
pages = {2748--2756},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty205},
doi = {10.1093/BIOINFORMATICS/BTY205},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RoguskiOHD18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RoseBVDPR18,
author = {Alexander S. Rose and
Anthony R. Bradley and
Yana Valasatava and
Jose M. Duarte and
Andreas Prlic and
Peter W. Rose},
title = {{NGL} viewer: web-based molecular graphics for large complexes},
journal = {Bioinform.},
volume = {34},
number = {21},
pages = {3755--3758},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty419},
doi = {10.1093/BIOINFORMATICS/BTY419},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RoseBVDPR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RosenthalLWGBF18,
author = {Sara Brin Rosenthal and
Julia Len and
Mikayla Webster and
Aaron Gary and
Amanda Birmingham and
Kathleen M. Fisch},
title = {Interactive network visualization in Jupyter notebooks: visJS2jupyter},
journal = {Bioinform.},
volume = {34},
number = {1},
pages = {126--128},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx581},
doi = {10.1093/BIOINFORMATICS/BTX581},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RosenthalLWGBF18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RossNGAAAB18,
author = {Caroline J. Ross and
Bilal Nizami and
Michael Glenister and
Olivier Sheik Amamuddy and
Ali Rana Atilgan and
Canan Atilgan and
{\"{O}}zlem Tastan Bishop},
title = {{MODE-TASK:} large-scale protein motion tools},
journal = {Bioinform.},
volume = {34},
number = {21},
pages = {3759--3763},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty427},
doi = {10.1093/BIOINFORMATICS/BTY427},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RossNGAAAB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RoweW18,
author = {Will P. M. Rowe and
Martyn D. Winn},
title = {Indexed variation graphs for efficient and accurate resistome profiling},
journal = {Bioinform.},
volume = {34},
number = {21},
pages = {3601--3608},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty387},
doi = {10.1093/BIOINFORMATICS/BTY387},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RoweW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RozovGHS18,
author = {Roye Rozov and
Gil Goldshlager and
Eran Halperin and
Ron Shamir},
title = {Faucet: streaming de novo assembly graph construction},
journal = {Bioinform.},
volume = {34},
number = {1},
pages = {147--154},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx471},
doi = {10.1093/BIOINFORMATICS/BTX471},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RozovGHS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RubioloMS18,
author = {Mariano Rubiolo and
Diego H. Milone and
Georgina Stegmayer},
title = {Extreme learning machines for reverse engineering of gene regulatory
networks from expression time series},
journal = {Bioinform.},
volume = {34},
number = {7},
pages = {1253--1260},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx730},
doi = {10.1093/BIOINFORMATICS/BTX730},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RubioloMS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RuszczyckiB18,
author = {Blazej Ruszczycki and
Tytus Bernas},
title = {Quality of biological images, reconstructed using localization microscopy
data},
journal = {Bioinform.},
volume = {34},
number = {5},
pages = {845--852},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx597},
doi = {10.1093/BIOINFORMATICS/BTX597},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RuszczyckiB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SaethangHKPKP18,
author = {Thammakorn Saethang and
Kenneth Hodge and
Ingorn Kimkong and
D. Michael Payne and
Mark A. Knepper and
Trairak Pisitkun},
title = {AbDesigner3D: a structure-guided tool for peptide-based antibody production},
journal = {Bioinform.},
volume = {34},
number = {12},
pages = {2158--2160},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty055},
doi = {10.1093/BIOINFORMATICS/BTY055},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SaethangHKPKP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SakuraiNSLIAK18,
author = {Nozomu Sakurai and
Takafumi Narise and
Joon{-}Soo Sim and
Chang{-}Muk Lee and
Chiaki Ikeda and
Nayumi Akimoto and
Shigehiko Kanaya},
title = {{UC2} search: using unique connectivity of uncharged compounds for
metabolite annotation by database searching in mass spectrometry-based
metabolomics},
journal = {Bioinform.},
volume = {34},
number = {4},
pages = {698--700},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx649},
doi = {10.1093/BIOINFORMATICS/BTX649},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SakuraiNSLIAK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SalazarA18,
author = {Alex Salazar and
Thomas Abeel},
title = {Approximate, simultaneous comparison of microbial genome architectures
via syntenic anchoring of quiver representations},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i732--i742},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty614},
doi = {10.1093/BIOINFORMATICS/BTY614},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SalazarA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SalekinZH18,
author = {Sirajul Salekin and
Jianqiu (Michelle) Zhang and
Yufei Huang},
title = {Base-pair resolution detection of transcription factor binding site
by deep deconvolutional network},
journal = {Bioinform.},
volume = {34},
number = {20},
pages = {3446--3453},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty383},
doi = {10.1093/BIOINFORMATICS/BTY383},
timestamp = {Mon, 17 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SalekinZH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SambamoorthyR18,
author = {Gayathri Sambamoorthy and
Karthik Raman},
title = {Understanding the evolution of functional redundancy in metabolic
networks},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i981--i987},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty604},
doi = {10.1093/BIOINFORMATICS/BTY604},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SambamoorthyR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SampsonBMH18,
author = {Joshua N. Sampson and
Simina M. Boca and
Steven C. Moore and
Ruth Heller},
title = {{FWER} and {FDR} control when testing multiple mediators},
journal = {Bioinform.},
volume = {34},
number = {14},
pages = {2418--2424},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty064},
doi = {10.1093/BIOINFORMATICS/BTY064},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SampsonBMH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Sanchez-Castillo18,
author = {Manuel Sanchez{-}Castillo and
David Blanco and
Isabel M. Tienda{-}Luna and
Maria Carmen Carrion Perez and
Yufei Huang},
title = {A Bayesian framework for the inference of gene regulatory networks
from time and pseudo-time series data},
journal = {Bioinform.},
volume = {34},
number = {6},
pages = {964--970},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx605},
doi = {10.1093/BIOINFORMATICS/BTX605},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Sanchez-Castillo18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Sanchez-PulidoP18,
author = {Luis S{\'{a}}nchez{-}Pulido and
Chris P. Ponting},
title = {{TMEM132:} an ancient architecture of cohesin and immunoglobulin domains
define a new family of neural adhesion molecules},
journal = {Bioinform.},
volume = {34},
number = {5},
pages = {721--724},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx689},
doi = {10.1093/BIOINFORMATICS/BTX689},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Sanchez-PulidoP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SandmannKGRGVEW18,
author = {Sarah Sandmann and
Mohsen Karimi and
Aniek O. de Graaf and
Christian Rohde and
Stefanie G{\"{o}}llner and
Julian Varghese and
Jan Ernsting and
Gunilla Walldin and
Bert A. van der Reijden and
Carsten M{\"{u}}ller{-}Tidow and
Luca Malcovati and
Eva Hellstr{\"{o}}m{-}Lindberg and
Joop H. Jansen and
Martin Dugas},
title = {appreci8: a pipeline for precise variant calling integrating 8 tools},
journal = {Bioinform.},
volume = {34},
number = {24},
pages = {4205--4212},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty518},
doi = {10.1093/BIOINFORMATICS/BTY518},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SandmannKGRGVEW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SantosFJGMM18,
author = {Ricardo N. dos Santos and
Allan J. R. Ferrari and
Hugo C. R. de Jesus and
F{\'{a}}bio C. Gozzo and
Faruck Morcos and
Leandro Mart{\'{\i}}nez},
title = {Enhancing protein fold determination by exploring the complementary
information of chemical cross-linking and coevolutionary signals},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {2201--2208},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty074},
doi = {10.1093/BIOINFORMATICS/BTY074},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SantosFJGMM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SaraeiSKE18,
author = {Sohrab Saraei and
Tomi Suomi and
Otto Kauko and
Laura L. Elo},
title = {Phosphonormalizer: an {R} package for normalization of MS-based label-free
phosphoproteomics},
journal = {Bioinform.},
volume = {34},
number = {4},
pages = {693--694},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx573},
doi = {10.1093/BIOINFORMATICS/BTX573},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SaraeiSKE18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SatasR18,
author = {Gryte Satas and
Benjamin J. Raphael},
title = {Haplotype phasing in single-cell DNA-sequencing data},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i211--i217},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty286},
doi = {10.1093/BIOINFORMATICS/BTY286},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SatasR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SauerwaldK18,
author = {Natalie Sauerwald and
Carl Kingsford},
title = {Quantifying the similarity of topological domains across normal and
cancer human cell types},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i475--i483},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty265},
doi = {10.1093/BIOINFORMATICS/BTY265},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SauerwaldK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SavojardoMFC18,
author = {Castrense Savojardo and
Pier Luigi Martelli and
Piero Fariselli and
Rita Casadio},
title = {DeepSig: deep learning improves signal peptide detection in proteins},
journal = {Bioinform.},
volume = {34},
number = {10},
pages = {1690--1696},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx818},
doi = {10.1093/BIOINFORMATICS/BTX818},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SavojardoMFC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchadFPSDM18,
author = {{\'{E}}va Sch{\'{a}}d and
Erzs{\'{e}}bet Fich{\'{o}} and
Rita Pancsa and
Istv{\'{a}}n Simon and
Zsuzsanna Doszt{\'{a}}nyi and
B{\'{a}}lint M{\'{e}}sz{\'{a}}ros},
title = {{DIBS:} a repository of disordered binding sites mediating interactions
with ordered proteins},
journal = {Bioinform.},
volume = {34},
number = {3},
pages = {535--537},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx640},
doi = {10.1093/BIOINFORMATICS/BTX640},
timestamp = {Mon, 26 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchadFPSDM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchafferNCKKM18,
author = {Alejandro A. Sch{\"{a}}ffer and
Eric P. Nawrocki and
Yoon Choi and
Paul A. Kitts and
Ilene Karsch{-}Mizrachi and
Richard McVeigh},
title = {VecScreen{\_}plus{\_}taxonomy: imposing a tax(onomy) increase on vector
contamination screening},
journal = {Bioinform.},
volume = {34},
number = {5},
pages = {755--759},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx669},
doi = {10.1093/BIOINFORMATICS/BTX669},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchafferNCKKM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchmokerDGVEB18,
author = {Anna M. Schmoker and
Heather E. Driscoll and
Stefanie R. Geiger and
James J. Vincent and
Alicia M. Ebert and
Bryan A. Ballif},
title = {An in silico proteomics screen to predict and prioritize protein-protein
interactions dependent on post-translationally modified motifs},
journal = {Bioinform.},
volume = {34},
number = {22},
pages = {3898--3906},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty434},
doi = {10.1093/BIOINFORMATICS/BTY434},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchmokerDGVEB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchwammleJ18,
author = {Veit Schw{\"{a}}mmle and
Ole N{\o}rregaard Jensen},
title = {VSClust: feature-based variance-sensitive clustering of omics data},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {2965--2972},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty224},
doi = {10.1093/BIOINFORMATICS/BTY224},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchwammleJ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SeamanR18,
author = {Laura Seaman and
Indika Rajapakse},
title = {4D nucleome Analysis Toolbox: analysis of Hi-C data with abnormal
karyotype and time series capabilities},
journal = {Bioinform.},
volume = {34},
number = {1},
pages = {104--106},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx484},
doi = {10.1093/BIOINFORMATICS/BTX484},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SeamanR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SechidisPMSWB18,
author = {Konstantinos Sechidis and
Konstantinos Papangelou and
Paul D. Metcalfe and
David Svensson and
James Weatherall and
Gavin Brown},
title = {Distinguishing prognostic and predictive biomarkers: an information
theoretic approach},
journal = {Bioinform.},
volume = {34},
number = {19},
pages = {3365--3376},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty357},
doi = {10.1093/BIOINFORMATICS/BTY357},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SechidisPMSWB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SechidisPMSWB18a,
author = {Konstantinos Sechidis and
Konstantinos Papangelou and
Paul D. Metcalfe and
David Svensson and
James Weatherall and
Gavin Brown},
title = {Distinguishing prognostic and predictive biomarkers: an information
theoretic approach},
journal = {Bioinform.},
volume = {34},
number = {23},
pages = {4139},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty515},
doi = {10.1093/BIOINFORMATICS/BTY515},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SechidisPMSWB18a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SeibtSH18,
author = {Kathrin M. Seibt and
Thomas Schmidt and
Tony Heitkam},
title = {FlexiDot: highly customizable, ambiguity-aware dotplots for visual
sequence analyses},
journal = {Bioinform.},
volume = {34},
number = {20},
pages = {3575--3577},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty395},
doi = {10.1093/BIOINFORMATICS/BTY395},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SeibtSH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SeifertB18,
author = {Michael Seifert and
Andreas Beyer},
title = {regNet: an {R} package for network-based propagation of gene expression
alterations},
journal = {Bioinform.},
volume = {34},
number = {2},
pages = {308--311},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx544},
doi = {10.1093/BIOINFORMATICS/BTX544},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SeifertB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SekhonSQ18,
author = {Arshdeep Sekhon and
Ritambhara Singh and
Yanjun Qi},
title = {DeepDiff: DEEP-learning for predicting DIFFerential gene expression
from histone modifications},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i891--i900},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty612},
doi = {10.1093/BIOINFORMATICS/BTY612},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SekhonSQ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SellaVUAI18,
author = {Nadir Sella and
Louis Verny and
Guido Uguzzoni and
S{\'{e}}verine Affeldt and
Herv{\'{e}} Isambert},
title = {{MIIC} online: a web server to reconstruct causal or non-causal networks
from non-perturbative data},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {2311--2313},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx844},
doi = {10.1093/BIOINFORMATICS/BTX844},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SellaVUAI18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SendorekLYSBB18,
author = {Dorota H. Sendorek and
Emilie Lalonde and
Cindy Q. Yao and
Veronica Y. Sabelnykova and
Robert G. Bristow and
Paul C. Boutros},
title = {NanoStringNormCNV: pre-processing of NanoString {CNV} data},
journal = {Bioinform.},
volume = {34},
number = {6},
pages = {1034--1036},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx707},
doi = {10.1093/BIOINFORMATICS/BTX707},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SendorekLYSBB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SeoOPK18,
author = {Seokjun Seo and
Minsik Oh and
Youngjune Park and
Sun Kim},
title = {DeepFam: deep learning based alignment-free method for protein family
modeling and prediction},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i254--i262},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty275},
doi = {10.1093/BIOINFORMATICS/BTY275},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SeoOPK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SerraCFT18,
author = {Angela Serra and
Pietro Coretto and
Michele Fratello and
Roberto Tagliaferri},
title = {Robust and sparse correlation matrix estimation for the analysis of
high-dimensional genomics data},
journal = {Bioinform.},
volume = {34},
number = {4},
pages = {625--634},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx642},
doi = {10.1093/BIOINFORMATICS/BTX642},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SerraCFT18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SextonSNDC18,
author = {Corinne E. Sexton and
Hayden Z. Smith and
Peter D. Newell and
Angela E. Douglas and
John M. Chaston},
title = {{MAGNAMWAR:} an {R} package for genome-wide association studies of
bacterial orthologs},
journal = {Bioinform.},
volume = {34},
number = {11},
pages = {1951--1952},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty001},
doi = {10.1093/BIOINFORMATICS/BTY001},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SextonSNDC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShabalinHCCKAO18,
author = {Andrey A. Shabalin and
Mohammad W. Hattab and
Shaunna L. Clark and
Robin F. Chan and
Gaurav Kumar and
Karolina A. {\AA}berg and
Edwin J. C. G. van den Oord},
title = {RaMWAS: fast methylome-wide association study pipeline for enrichment
platforms},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {2283--2285},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty069},
doi = {10.1093/BIOINFORMATICS/BTY069},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShabalinHCCKAO18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SharmaRTPS18,
author = {Ronesh Sharma and
Gaurav Raicar and
Tatsuhiko Tsunoda and
Ashwini Patil and
Alok Sharma},
title = {{OPAL:} prediction of MoRF regions in intrinsically disordered protein
sequences},
journal = {Bioinform.},
volume = {34},
number = {11},
pages = {1850--1858},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty032},
doi = {10.1093/BIOINFORMATICS/BTY032},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SharmaRTPS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShiWWHCX18,
author = {Xu Shi and
Xiao Wang and
Tian{-}Li Wang and
Leena Hilakivi{-}Clarke and
Robert Clarke and
Jianhua Xuan},
title = {SparseIso: a novel Bayesian approach to identify alternatively spliced
isoforms from RNA-seq data},
journal = {Bioinform.},
volume = {34},
number = {1},
pages = {56--63},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx557},
doi = {10.1093/BIOINFORMATICS/BTX557},
timestamp = {Tue, 08 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShiWWHCX18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShinLSPK18,
author = {Sunguk Shin and
Hanna Lee and
Hyeonju Son and
Soonmyung Paik and
Sangwoo Kim},
title = {{AIRVF:} a filtering toolbox for precise variant calling in Ion Torrent
sequencing},
journal = {Bioinform.},
volume = {34},
number = {7},
pages = {1232--1234},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx719},
doi = {10.1093/BIOINFORMATICS/BTX719},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShinLSPK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShindeBIHLRZL18,
author = {Jayendra Shinde and
Quentin Bayard and
Sandrine Imbeaud and
Th{\'{e}}o Z. Hirsch and
Feng Liu and
Victor Renault and
Jessica Zucman{-}Rossi and
Eric Letouz{\'{e}}},
title = {Palimpsest: an {R} package for studying mutational and structural
variant signatures along clonal evolution in cancer},
journal = {Bioinform.},
volume = {34},
number = {19},
pages = {3380--3381},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty388},
doi = {10.1093/BIOINFORMATICS/BTY388},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShindeBIHLRZL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShockleyVL18,
author = {Erin M. Shockley and
Jasper A. Vrugt and
Carlos F. Lopez},
title = {PyDREAM: high-dimensional parameter inference for biological models
in python},
journal = {Bioinform.},
volume = {34},
number = {4},
pages = {695--697},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx626},
doi = {10.1093/BIOINFORMATICS/BTX626},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShockleyVL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShresthaYA18,
author = {Anish Man Singh Shrestha and
Naruki Yoshikawa and
Kiyoshi Asai},
title = {Combining probabilistic alignments with read pair information improves
accuracy of split-alignments},
journal = {Bioinform.},
volume = {34},
number = {21},
pages = {3631--3637},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty398},
doi = {10.1093/BIOINFORMATICS/BTY398},
timestamp = {Mon, 25 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShresthaYA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SignalGDM18,
author = {Bethany Signal and
Brian S. Gloss and
Marcel E. Dinger and
Tim R. Mercer},
title = {Machine learning annotation of human branchpoints},
journal = {Bioinform.},
volume = {34},
number = {6},
pages = {920--927},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx688},
doi = {10.1093/BIOINFORMATICS/BTX688},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SignalGDM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SingerRHTSTNPBC18,
author = {Jochen Singer and
Hans{-}Joachim Ruscheweyh and
Ariane L. Hofmann and
Thomas Thurnherr and
Franziska Singer and
Nora C. Toussaint and
Charlotte K. Y. Ng and
Salvatore Piscuoglio and
Christian Beisel and
Gerhard Christofori and
Reinhard Dummer and
Michael N. Hall and
Wilhelm Krek and
Mitchell P. Levesque and
Markus G. Manz and
Holger Moch and
Andreas Papassotiropoulos and
Daniel J. Stekhoven and
Peter Wild and
Thomas W{\"{u}}st and
Bernd Rinn and
Niko Beerenwinkel},
title = {NGS-pipe: a flexible, easily extendable and highly configurable framework
for {NGS} analysis},
journal = {Bioinform.},
volume = {34},
number = {1},
pages = {107--108},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx540},
doi = {10.1093/BIOINFORMATICS/BTX540},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SingerRHTSTNPBC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SipolaMC18,
author = {Aleksi Sipola and
Pekka Marttinen and
Jukka Corander},
title = {Bacmeta: simulator for genomic evolution in bacterial metapopulations},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {2308--2310},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty093},
doi = {10.1093/BIOINFORMATICS/BTY093},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SipolaMC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SkumsZSGDKMRCJB18,
author = {Pavel Skums and
Alex Zelikovsky and
Rahul Singh and
Walker Gussler and
Zoya Dimitrova and
Sergey Knyazev and
Igor Mandric and
Sumathi Ramachandran and
David S. Campo and
Deeptanshu Jha and
Leonid Bunimovich and
Elizabeth Costenbader and
Connie Sexton and
Siobh{\'{a}}n O'Connor and
Guo{-}liang Xia and
Yury Khudyakov},
title = {{QUENTIN:} reconstruction of disease transmissions from viral quasispecies
genomic data},
journal = {Bioinform.},
volume = {34},
number = {1},
pages = {163--170},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx402},
doi = {10.1093/BIOINFORMATICS/BTX402},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SkumsZSGDKMRCJB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SmailiGH18,
author = {Fatima Zohra Smaili and
Xin Gao and
Robert Hoehndorf},
title = {Onto2Vec: joint vector-based representation of biological entities
and their ontology-based annotations},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i52--i60},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty259},
doi = {10.1093/BIOINFORMATICS/BTY259},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SmailiGH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Solano-RomanACO18,
author = {Antonio Solano{-}Rom{\'{a}}n and
Ver{\'{o}}nica Alfaro{-}Arias and
Carlos Cruz{-}Castillo and
Allan Orozco{-}Solano},
title = {Visualization portal for genetic variation (VizGVar): a tool for interactive
visualization of SNPs and somatic mutations in exons, genes and protein
domains},
journal = {Bioinform.},
volume = {34},
number = {6},
pages = {1048--1049},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx694},
doi = {10.1093/BIOINFORMATICS/BTX694},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Solano-RomanACO18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SonesonR18,
author = {Charlotte Soneson and
Mark D. Robinson},
title = {Towards unified quality verification of synthetic count data with
countsimQC},
journal = {Bioinform.},
volume = {34},
number = {4},
pages = {691--692},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx631},
doi = {10.1093/BIOINFORMATICS/BTX631},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SonesonR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SongLLMAHCWP18,
author = {Jiangning Song and
Fuyi Li and
Andr{\'{e}} Leier and
Tatiana T. Marquez{-}Lago and
Tatsuya Akutsu and
Gholamreza Haffari and
Kuo{-}Chen Chou and
Geoffrey I. Webb and
Robert N. Pike},
title = {PROSPERous: high-throughput prediction of substrate cleavage sites
for 90 proteases with improved accuracy},
journal = {Bioinform.},
volume = {34},
number = {4},
pages = {684--687},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx670},
doi = {10.1093/BIOINFORMATICS/BTX670},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SongLLMAHCWP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SongLPEYW18,
author = {Yeunjoo E. Song and
Sungyoung Lee and
Kyungtaek Park and
Robert C. Elston and
Hyeon{-}Jong Yang and
Sungho Won},
title = {{ONETOOL} for the analysis of family-based big data},
journal = {Bioinform.},
volume = {34},
number = {16},
pages = {2851--2853},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty180},
doi = {10.1093/BIOINFORMATICS/BTY180},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SongLPEYW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SotoZBA18,
author = {Axel J. Soto and
Chrysoula Zerva and
Riza Batista{-}Navarro and
Sophia Ananiadou},
title = {LitPathExplorer: a confidence-based visual text analytics tool for
exploring literature-enriched pathway models},
journal = {Bioinform.},
volume = {34},
number = {8},
pages = {1389--1397},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx774},
doi = {10.1093/BIOINFORMATICS/BTX774},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SotoZBA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SrinivasanCM18,
author = {Shyam Srinivasan and
William R. Cluett and
Radhakrishnan Mahadevan},
title = {Model-based design of bistable cell factories for metabolic engineering},
journal = {Bioinform.},
volume = {34},
number = {8},
pages = {1363--1371},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx769},
doi = {10.1093/BIOINFORMATICS/BTX769},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SrinivasanCM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SrivatsaKSEEDB18,
author = {Sumana Srivatsa and
Jack Kuipers and
Fabian Schmich and
Simone Eicher and
Mario Emmenlauer and
Christoph Dehio and
Niko Beerenwinkel},
title = {Improved pathway reconstruction from {RNA} interference screens by
exploiting off-target effects},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i519--i527},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty240},
doi = {10.1093/BIOINFORMATICS/BTY240},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SrivatsaKSEEDB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StaporFH18,
author = {Paul Stapor and
Fabian Fr{\"{o}}hlich and
Jan Hasenauer},
title = {Optimization and profile calculation of {ODE} models using second
order adjoint sensitivity analysis},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i151--i159},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty230},
doi = {10.1093/BIOINFORMATICS/BTY230},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/StaporFH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StaporWBHLFKHFH18,
author = {Paul Stapor and
Daniel Weindl and
Benjamin Ballnus and
Sabine Hug and
Carolin Loos and
Anna Fiedler and
Sabrina Krause and
Sabrina Hross and
Fabian Fr{\"{o}}hlich and
Jan Hasenauer},
title = {{PESTO:} Parameter EStimation TOolbox},
journal = {Bioinform.},
volume = {34},
number = {4},
pages = {705--707},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx676},
doi = {10.1093/BIOINFORMATICS/BTX676},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/StaporWBHLFKHFH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StaszowskaFHPCJ18,
author = {Adela D. Staszowska and
Patrick Fox{-}Roberts and
Liisa M. Hirvonen and
Christopher J. Peddie and
Lucy M. Collinson and
Gareth E. Jones and
Susan Cox},
title = {The R{\'{e}}nyi divergence enables accurate and precise cluster
analysis for localization microscopy},
journal = {Bioinform.},
volume = {34},
number = {23},
pages = {4102--4111},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty403},
doi = {10.1093/BIOINFORMATICS/BTY403},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/StaszowskaFHPCJ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StephensonWSC18,
author = {Liam Stephenson and
Yoshua Wakeham and
Nick Seidenman and
Jarny Choi},
title = {Building online genomics applications using BioPyramid},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {3055--3057},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty207},
doi = {10.1093/BIOINFORMATICS/BTY207},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/StephensonWSC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Stepniewska-Dziubinska18,
author = {Marta M. Stepniewska{-}Dziubinska and
Piotr Zielenkiewicz and
Pawel Siedlecki},
title = {Development and evaluation of a deep learning model for protein-ligand
binding affinity prediction},
journal = {Bioinform.},
volume = {34},
number = {21},
pages = {3666--3674},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty374},
doi = {10.1093/BIOINFORMATICS/BTY374},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Stepniewska-Dziubinska18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StocksMBPMTDM18,
author = {Matthew B. Stocks and
Irina Mohorianu and
Matthew Beckers and
Claudia Paicu and
Simon Moxon and
Joshua Thody and
Tamas Dalmay and
Vincent Moulton},
title = {The {UEA} sRNA Workbench (version 4.4): a comprehensive suite of tools
for analyzing miRNAs and sRNAs},
journal = {Bioinform.},
volume = {34},
number = {19},
pages = {3382--3384},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty338},
doi = {10.1093/BIOINFORMATICS/BTY338},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/StocksMBPMTDM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SuHZZWCCL18,
author = {Zhen{-}Dong Su and
Yan Huang and
Zhao{-}Yue Zhang and
Ya{-}Wei Zhao and
Dong Wang and
Wei Chen and
Kuo{-}Chen Chou and
Hao Lin},
title = {iLoc-lncRNA: predict the subcellular location of lncRNAs by incorporating
octamer composition into general PseKNC},
journal = {Bioinform.},
volume = {34},
number = {24},
pages = {4196--4204},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty508},
doi = {10.1093/BIOINFORMATICS/BTY508},
timestamp = {Thu, 29 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SuHZZWCCL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SugiyamaGLB18,
author = {Mahito Sugiyama and
M. Elisabetta Ghisu and
Felipe Llinares{-}L{\'{o}}pez and
Karsten M. Borgwardt},
title = {graphkernels: {R} and Python packages for graph comparison},
journal = {Bioinform.},
volume = {34},
number = {3},
pages = {530--532},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx602},
doi = {10.1093/BIOINFORMATICS/BTX602},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SugiyamaGLB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Sun18,
author = {Yan{-}Bo Sun},
title = {FasParser2: a graphical platform for batch manipulation of tremendous
amount of sequence data},
journal = {Bioinform.},
volume = {34},
number = {14},
pages = {2493--2495},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty126},
doi = {10.1093/BIOINFORMATICS/BTY126},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Sun18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SunDPS18,
author = {Hequan Sun and
Jia Ding and
Mathieu Piedno{\"{e}}l and
Korbinian Schneeberger},
title = {findGSE: estimating genome size variation within human and Arabidopsis
using k-mer frequencies},
journal = {Bioinform.},
volume = {34},
number = {4},
pages = {550--557},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx637},
doi = {10.1093/BIOINFORMATICS/BTX637},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SunDPS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SunHZCLLPCLWLL18,
author = {Xiwei Sun and
Yi Han and
Liyuan Zhou and
Enguo Chen and
Bingjian Lu and
Yong Liu and
Xiaoqing Pan and
Allen W. Cowley Jr. and
Mingyu Liang and
Qingbiao Wu and
Yan Lu and
Pengyuan Liu},
title = {A comprehensive evaluation of alignment software for reduced representation
bisulfite sequencing data},
journal = {Bioinform.},
volume = {34},
number = {16},
pages = {2715--2723},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty174},
doi = {10.1093/BIOINFORMATICS/BTY174},
timestamp = {Tue, 26 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SunHZCLLPCLWLL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SunMSSWBWWD18,
author = {Sam Q. Sun and
R. Jay Mashl and
Sohini Sengupta and
Adam D. Scott and
Weihua Wang and
Prag Batra and
Liang{-}Bo Wang and
Matthew A. Wyczalkowski and
Li Ding},
title = {Database of evidence for precision oncology portal},
journal = {Bioinform.},
volume = {34},
number = {24},
pages = {4315--4317},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty531},
doi = {10.1093/BIOINFORMATICS/BTY531},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SunMSSWBWWD18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SunWDWLDHC18,
author = {Zhe Sun and
Ting Wang and
Ke Deng and
Xiao{-}Feng Wang and
Robert Lafyatis and
Ying Ding and
Ming Hu and
Wei Chen},
title = {{DIMM-SC:} a Dirichlet mixture model for clustering droplet-based
single cell transcriptomic data},
journal = {Bioinform.},
volume = {34},
number = {1},
pages = {139--146},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx490},
doi = {10.1093/BIOINFORMATICS/BTX490},
timestamp = {Tue, 26 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SunWDWLDHC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SunWWS18,
author = {Kun Sun and
Jiguang Wang and
Huating Wang and
Hao Sun},
title = {GeneCT: a generalizable cancerous status and tissue origin classifier
for pan-cancer biopsies},
journal = {Bioinform.},
volume = {34},
number = {23},
pages = {4129--4130},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty524},
doi = {10.1093/BIOINFORMATICS/BTY524},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SunWWS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SundinPMASMDHSH18,
author = {Iiris Sundin and
Tomi Peltola and
Luana Micallef and
Homayun Afrabandpey and
Marta Soare and
Muntasir Mamun Majumder and
Pedram Daee and
Chen He and
Baris Serim and
Aki S. Havulinna and
Caroline Heckman and
Giulio Jacucci and
Pekka Marttinen and
Samuel Kaski},
title = {Improving genomics-based predictions for precision medicine through
active elicitation of expert knowledge},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i395--i403},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty257},
doi = {10.1093/BIOINFORMATICS/BTY257},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SundinPMASMDHSH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SuniSTIEC18,
author = {Veronika Suni and
Tomi Suomi and
Tomoya Tsubosaka and
Susumu Y. Imanishi and
Laura L. Elo and
Garry L. Corthals},
title = {SimPhospho: a software tool enabling confident phosphosite assignment},
journal = {Bioinform.},
volume = {34},
number = {15},
pages = {2690--2692},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty151},
doi = {10.1093/BIOINFORMATICS/BTY151},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SuniSTIEC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SuphavilaiBN18,
author = {Chayaporn Suphavilai and
Denis Bertrand and
Niranjan Nagarajan},
title = {Predicting Cancer Drug Response using a Recommender System},
journal = {Bioinform.},
volume = {34},
number = {22},
pages = {3907--3914},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty452},
doi = {10.1093/BIOINFORMATICS/BTY452},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SuphavilaiBN18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SuplatovKPVS18,
author = {Dmitry A. Suplatov and
Kirill E. Kopylov and
Nina N. Popova and
Vladimir V. Voevodin and
Vytas K. Svedas},
title = {Mustguseal: a server for multiple structure-guided sequence alignment
of protein families},
journal = {Bioinform.},
volume = {34},
number = {9},
pages = {1583--1585},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx831},
doi = {10.1093/BIOINFORMATICS/BTX831},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SuplatovKPVS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SwainstonDJRCWF18,
author = {Neil Swainston and
Mark Dunstan and
Adrian J. Jervis and
Christopher J. Robinson and
Pablo Carbonell and
Alan R. Williams and
Jean{-}Loup Faulon and
Nigel S. Scrutton and
Douglas B. Kell},
title = {PartsGenie: an integrated tool for optimizing and sharing synthetic
biology parts},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {2327--2329},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty105},
doi = {10.1093/BIOINFORMATICS/BTY105},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SwainstonDJRCWF18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SzalkaiG18,
author = {Bal{\'{a}}zs Szalkai and
Vince Grolmusz},
title = {{SECLAF:} a webserver and deep neural network design tool for hierarchical
biological sequence classification},
journal = {Bioinform.},
volume = {34},
number = {14},
pages = {2487--2489},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty116},
doi = {10.1093/BIOINFORMATICS/BTY116},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SzalkaiG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TaboadaECM18,
author = {Blanca Taboada and
Karel Estrada and
Ricardo Ciria and
Enrique Merino},
title = {Operon-mapper: a web server for precise operon identification in bacterial
and archaeal genomes},
journal = {Bioinform.},
volume = {34},
number = {23},
pages = {4118--4120},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty496},
doi = {10.1093/BIOINFORMATICS/BTY496},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TaboadaECM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TaeS18,
author = {Donghyun Tae and
Junhee Seok},
title = {mEBT: multiple-matching evidence-based translator of murine genomic
responses for human immunity studies},
journal = {Bioinform.},
volume = {34},
number = {21},
pages = {3741--3743},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty431},
doi = {10.1093/BIOINFORMATICS/BTY431},
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biburl = {https://dblp.org/rec/journals/bioinformatics/TaeS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TaherzadehZLY18,
author = {Ghazaleh Taherzadeh and
Yaoqi Zhou and
Alan Wee{-}Chung Liew and
Yuedong Yang},
title = {Structure-based prediction of protein- peptide binding regions using
Random Forest},
journal = {Bioinform.},
volume = {34},
number = {3},
pages = {477--484},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx614},
doi = {10.1093/BIOINFORMATICS/BTX614},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TaherzadehZLY18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TahsinWOMSG18,
author = {Tasnia Tahsin and
Davy Weissenbacher and
Karen O'Connor and
Arjun Magge and
Matthew Scotch and
Graciela Gonzalez{-}Hernandez},
title = {GeoBoost: accelerating research involving the geospatial metadata
of virus GenBank records},
journal = {Bioinform.},
volume = {34},
number = {9},
pages = {1606--1608},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx799},
doi = {10.1093/BIOINFORMATICS/BTX799},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TahsinWOMSG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TajuNLKO18,
author = {Semmy Wellem Taju and
Trinh{-}Trung{-}Duong Nguyen and
Nguyen{-}Quoc{-}Khanh Le and
Rosdyana Mangir Irawan Kusuma and
Yu{-}Yen Ou},
title = {DeepEfflux: a 2D convolutional neural network model for identifying
families of efflux proteins in transporters},
journal = {Bioinform.},
volume = {34},
number = {18},
pages = {3111--3117},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty302},
doi = {10.1093/BIOINFORMATICS/BTY302},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TajuNLKO18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TakedaH18,
author = {Taikai Takeda and
Michiaki Hamada},
title = {Beyond similarity assessment: selecting the optimal model for sequence
alignment via the Factorized Asymptotic Bayesian algorithm},
journal = {Bioinform.},
volume = {34},
number = {4},
pages = {576--584},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx643},
doi = {10.1093/BIOINFORMATICS/BTX643},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TakedaH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TamiolaSMM18,
author = {Kamil Tamiola and
Ruud M. Scheek and
Pieter S. van der Meulen and
Frans A. A. Mulder},
title = {pepKalc: scalable and comprehensive calculation of electrostatic interactions
in random coil polypeptides},
journal = {Bioinform.},
volume = {34},
number = {12},
pages = {2053--2060},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty033},
doi = {10.1093/BIOINFORMATICS/BTY033},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TamiolaSMM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TanLNP18,
author = {Phit Ling Tan and
Yosvany L{\'{o}}pez and
Kenta Nakai and
Ashwini Patil},
title = {TimeXNet Web: identifying cellular response networks from diverse
omics time-course data},
journal = {Bioinform.},
volume = {34},
number = {21},
pages = {3764--3765},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty393},
doi = {10.1093/BIOINFORMATICS/BTY393},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TanLNP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TangHBZW18,
author = {Weiqi Tang and
Likun Huang and
Suhong Bu and
Xuzhang Zhang and
Weiren Wu},
title = {Estimation of {QTL} heritability based on pooled sequencing data},
journal = {Bioinform.},
volume = {34},
number = {6},
pages = {978--984},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx703},
doi = {10.1093/BIOINFORMATICS/BTX703},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TangHBZW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TangLLZZ18,
author = {Bixia Tang and
Feifei Li and
Jing Li and
Wenming Zhao and
Zhihua Zhang},
title = {Delta: a new web-based 3D genome visualization and analysis platform},
journal = {Bioinform.},
volume = {34},
number = {8},
pages = {1409--1410},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx805},
doi = {10.1093/BIOINFORMATICS/BTX805},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TangLLZZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TangSLMHL18,
author = {Xing Tang and
Arunima Srivastava and
Huayang Liu and
Raghu Machiraju and
Kun Huang and
Gustavo Leone},
title = {annoPeak: a web application to annotate and visualize peaks from ChIP-seq/ChIP-exo-seq},
journal = {Bioinform.},
volume = {34},
number = {16},
pages = {2879},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty226},
doi = {10.1093/BIOINFORMATICS/BTY226},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TangSLMHL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TangSLZWQZSY18,
author = {Zaixiang Tang and
Yueping Shen and
Yan Li and
Xinyan Zhang and
Jia Wen and
Chen'ao Qian and
Wenzhuo Zhuang and
Xinghua Shi and
Nengjun Yi},
title = {Group spike-and-slab lasso generalized linear models for disease prediction
and associated genes detection by incorporating pathway information},
journal = {Bioinform.},
volume = {34},
number = {6},
pages = {901--910},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx684},
doi = {10.1093/BIOINFORMATICS/BTX684},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TangSLZWQZSY18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TangWYTZ18,
author = {Wei Tang and
Shixiang Wan and
Zhen Yang and
Andrew E. Teschendorff and
Quan Zou},
title = {Tumor origin detection with tissue-specific miRNA and {DNA} methylation
markers},
journal = {Bioinform.},
volume = {34},
number = {3},
pages = {398--406},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx622},
doi = {10.1093/BIOINFORMATICS/BTX622},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TangWYTZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TanizawaFN18,
author = {Yasuhiro Tanizawa and
Takatomo Fujisawa and
Yasukazu Nakamura},
title = {{DFAST:} a flexible prokaryotic genome annotation pipeline for faster
genome publication},
journal = {Bioinform.},
volume = {34},
number = {6},
pages = {1037--1039},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx713},
doi = {10.1093/BIOINFORMATICS/BTX713},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TanizawaFN18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TarTBWCLGWO18,
author = {Paul D. Tar and
Neil A. Thacker and
M. Babur and
Yvonne Watson and
Sue Cheung and
R. A Little and
R. G. Gieling and
K. J. Williams and
J. P. B. O'Connor},
title = {A new method for the high-precision assessment of tumor changes in
response to treatment},
journal = {Bioinform.},
volume = {34},
number = {15},
pages = {2625--2633},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty115},
doi = {10.1093/BIOINFORMATICS/BTY115},
timestamp = {Tue, 03 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TarTBWCLGWO18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TauschSALLNR18,
author = {Simon H. Tausch and
Benjamin Strauch and
Andreas Andrusch and
Tobias P. Loka and
Martin S. Lindner and
Andreas Nitsche and
Bernhard Y. Renard},
title = {LiveKraken--real-time metagenomic classification of illumina data},
journal = {Bioinform.},
volume = {34},
number = {21},
pages = {3750--3752},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty433},
doi = {10.1093/BIOINFORMATICS/BTY433},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TauschSALLNR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TawariSPOADN18,
author = {Nilesh R. Tawari and
Justine Jia Wen Seow and
Dharuman Perumal and
Jack L. Ow and
Shimin Ang and
Arun George Devasia and
Pauline C. Ng},
title = {ChronQC: a quality control monitoring system for clinical next generation
sequencing},
journal = {Bioinform.},
volume = {34},
number = {10},
pages = {1799--1800},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx843},
doi = {10.1093/BIOINFORMATICS/BTX843},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TawariSPOADN18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TchechmedjievAE18,
author = {Andon Tchechmedjiev and
Amine Abdaoui and
Vincent Emonet and
Soumia Melzi and
Jitendra Jonnagaddala and
Cl{\'{e}}ment Jonquet},
title = {Enhanced functionalities for annotating and indexing clinical text
with the {NCBO} Annotator+},
journal = {Bioinform.},
volume = {34},
number = {11},
pages = {1962--1965},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty009},
doi = {10.1093/BIOINFORMATICS/BTY009},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TchechmedjievAE18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TerayamaIAOT18,
author = {Kei Terayama and
Hiroaki Iwata and
Mitsugu Araki and
Yasushi Okuno and
Koji Tsuda},
title = {Machine learning accelerates MD-based binding pose prediction between
ligands and proteins},
journal = {Bioinform.},
volume = {34},
number = {5},
pages = {770--778},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx638},
doi = {10.1093/BIOINFORMATICS/BTX638},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TerayamaIAOT18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TernesRM18,
author = {Nils Tern{\`{e}}s and
Federico Rotolo and
Stefan Michiels},
title = {biospear: an {R} package for biomarker selection in penalized Cox
regression},
journal = {Bioinform.},
volume = {34},
number = {1},
pages = {112--113},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx560},
doi = {10.1093/BIOINFORMATICS/BTX560},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TernesRM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ThijssenDHW18,
author = {Bram Thijssen and
Tjeerd Dijkstra and
Tom Heskes and
Lodewyk F. A. Wessels},
title = {Bayesian data integration for quantifying the contribution of diverse
measurements to parameter estimates},
journal = {Bioinform.},
volume = {34},
number = {5},
pages = {803--811},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx666},
doi = {10.1093/BIOINFORMATICS/BTX666},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ThijssenDHW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TianR18,
author = {Mingyuan Tian and
Jennifer L. Reed},
title = {Integrating proteomic or transcriptomic data into metabolic models
using linear bound flux balance analysis},
journal = {Bioinform.},
volume = {34},
number = {22},
pages = {3882--3888},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty445},
doi = {10.1093/BIOINFORMATICS/BTY445},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TianR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TiberiWCHF18,
author = {Simone Tiberi and
Mark Walsh and
Massimo Cavallaro and
Daniel Hebenstreit and
B{\"{a}}rbel Finkenst{\"{a}}dt},
title = {Bayesian inference on stochastic gene transcription from flow cytometry
data},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i647--i655},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty568},
doi = {10.1093/BIOINFORMATICS/BTY568},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TiberiWCHF18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TibertiPFF18,
author = {Matteo Tiberti and
Alessandro Pandini and
Franca Fraternali and
Arianna Fornili},
title = {In silico identification of rescue sites by double force scanning},
journal = {Bioinform.},
volume = {34},
number = {2},
pages = {207--214},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx515},
doi = {10.1093/BIOINFORMATICS/BTX515},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TibertiPFF18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ToCWLCGCKCCY18,
author = {Andrew Ching{-}Yuet To and
David Ho{-}Ting Chu and
Angela Ruoning Wang and
Frances Cheuk{-}Yau Li and
Alan Wai{-}On Chiu and
Daisy Yuwei Gao and
Chung Hang Jonathan Choi and
Siu{-}Kai Kong and
Ting{-}Fung Chan and
King{-}Ming Chan and
Kevin Y. Yip},
title = {A comprehensive web tool for toehold switch design},
journal = {Bioinform.},
volume = {34},
number = {16},
pages = {2862--2864},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty216},
doi = {10.1093/BIOINFORMATICS/BTY216},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ToCWLCGCKCCY18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TogninalliRIB18,
author = {Matteo Togninalli and
Damian Roqueiro and
COPDGene Investigators and
Karsten M. Borgwardt},
title = {Accurate and adaptive imputation of summary statistics in mixed-ethnicity
cohorts},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i687--i696},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty596},
doi = {10.1093/BIOINFORMATICS/BTY596},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TogninalliRIB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TomachewskiGJGR18,
author = {Douglas Tomachewski and
Carolina Weigert Galv{\~{a}}o and
Arion de Campos J{\'{u}}nior and
Alaine Margarete Guimar{\~{a}}es and
Jos{\'{e}} Carlos Ferreira da Rocha and
Rafael Mazer Etto},
title = {Ribopeaks: a web tool for bacterial classification through m/z data
from ribosomal proteins},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {3058--3060},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty215},
doi = {10.1093/BIOINFORMATICS/BTY215},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TomachewskiGJGR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TomljanovicPSCT18,
author = {Zeljko Tomljanovic and
Mitesh Patel and
William Shin and
Andrea Califano and
Andrew F. Teich},
title = {{ZCCHC17} is a master regulator of synaptic gene expression in Alzheimer's
disease},
journal = {Bioinform.},
volume = {34},
number = {3},
pages = {367--371},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx608},
doi = {10.1093/BIOINFORMATICS/BTX608},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TomljanovicPSCT18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TongRZ18,
author = {Yin Tong and
Beibei Ru and
Jiangwen Zhang},
title = {miRNACancerMAP: an integrative web server inferring miRNA regulation
network for cancer},
journal = {Bioinform.},
volume = {34},
number = {18},
pages = {3211--3213},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty320},
doi = {10.1093/BIOINFORMATICS/BTY320},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TongRZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ToptasRKK18,
author = {Berke {\c{C}} Toptas and
Goran Rakocevic and
P{\'{e}}ter K{\'{o}}m{\'{a}}r and
Deniz Kural},
title = {Comparing complex variants in family trios},
journal = {Bioinform.},
volume = {34},
number = {24},
pages = {4241--4247},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty443},
doi = {10.1093/BIOINFORMATICS/BTY443},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ToptasRKK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TotiHTBP18,
author = {Daniele Toti and
Le Viet Hung and
Valentina Tortosa and
Valentina Brandi and
Fabio Polticelli},
title = {{LIBRA-WA:} a web application for ligand binding site detection and
protein function recognition},
journal = {Bioinform.},
volume = {34},
number = {5},
pages = {878--880},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx715},
doi = {10.1093/BIOINFORMATICS/BTX715},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TotiHTBP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TranTE18,
author = {Ngoc{-}Vinh Tran and
Bastian Greshake Tzovaras and
Ingo Ebersberger},
title = {PhyloProfile: dynamic visualization and exploration of multi-layered
phylogenetic profiles},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {3041--3043},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty225},
doi = {10.1093/BIOINFORMATICS/BTY225},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TranTE18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TranZSMDK18,
author = {Diem{-}Trang T. Tran and
Tian Zhang and
Ryan Stutsman and
Matthew Might and
Umesh R. Desai and
Balagurunathan Kuberan},
title = {anexVis: visual analytics framework for analysis of {RNA} expression},
journal = {Bioinform.},
volume = {34},
number = {14},
pages = {2510--2512},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty122},
doi = {10.1093/BIOINFORMATICS/BTY122},
timestamp = {Thu, 17 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TranZSMDK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TreepongGMCHV18,
author = {Panisa Treepong and
Christophe Guyeux and
Alexandre Meunier and
Charlotte Couchoud and
Didier Hocquet and
Benoit Valot},
title = {panISa: ab initio detection of insertion sequences in bacterial genomes
from short read sequence data},
journal = {Bioinform.},
volume = {34},
number = {22},
pages = {3795--3800},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty479},
doi = {10.1093/BIOINFORMATICS/BTY479},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TreepongGMCHV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TroshinPSBMB18,
author = {Peter V. Troshin and
James B. Procter and
Alexander Sherstnev and
Daniel L. Barton and
F{\'{a}}bio Madeira and
Geoffrey J. Barton},
title = {{JABAWS} 2.2 distributed web services for Bioinformatics: protein
disorder, conservation and {RNA} secondary structure},
journal = {Bioinform.},
volume = {34},
number = {11},
pages = {1939--1940},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty045},
doi = {10.1093/BIOINFORMATICS/BTY045},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TroshinPSBMB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TsengCPCLZKLHLC18,
author = {Kuan{-}Chieh Tseng and
Yi{-}Fan Chiang{-}Hsieh and
Hsuan Pai and
Chi{-}Nga Chow and
Shu{-}Chuan Lee and
Han{-}Qin Zheng and
Po{-}Li Kuo and
Guan{-}Zhen Li and
Yu{-}Cheng Hung and
Na{-}Sheng Lin and
Wen{-}Chi Chang},
title = {microRPM: a microRNA prediction model based only on plant small {RNA}
sequencing data},
journal = {Bioinform.},
volume = {34},
number = {7},
pages = {1108--1115},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx725},
doi = {10.1093/BIOINFORMATICS/BTX725},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TsengCPCLZKLHLC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TsiantisBB18,
author = {Nikolaos Tsiantis and
Eva Balsa{-}Canto and
Julio R. Banga},
title = {Optimality and identification of dynamic models in systems biology:
an inverse optimal control framework},
journal = {Bioinform.},
volume = {34},
number = {14},
pages = {2433--2440},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty139},
doi = {10.1093/BIOINFORMATICS/BTY139},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TsiantisBB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TsiantisBB18a,
author = {Nikolaos Tsiantis and
Eva Balsa{-}Canto and
Julio R. Banga},
title = {Optimality and identification of dynamic models in systems biology:
an inverse optimal control framework},
journal = {Bioinform.},
volume = {34},
number = {21},
pages = {3780},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty438},
doi = {10.1093/BIOINFORMATICS/BTY438},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TsiantisBB18a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TurnerGIM18,
author = {Isaac Turner and
Kiran V. Garimella and
Zamin Iqbal and
Gil McVean},
title = {Integrating long-range connectivity information into de Bruijn graphs},
journal = {Bioinform.},
volume = {34},
number = {15},
pages = {2556--2565},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty157},
doi = {10.1093/BIOINFORMATICS/BTY157},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TurnerGIM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TyzackRBT18,
author = {Jonathan D. Tyzack and
Ant{\'{o}}nio J. M. Ribeiro and
Neera Borkakoti and
Janet M. Thornton},
title = {Transform-MinER: transforming molecules in enzyme reactions},
journal = {Bioinform.},
volume = {34},
number = {20},
pages = {3597--3599},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty394},
doi = {10.1093/BIOINFORMATICS/BTY394},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TyzackRBT18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/UhlmannHHU18,
author = {Virginie Uhlmann and
Carsten Haubold and
Fred A. Hamprecht and
Michael Unser},
title = {DiversePathsJ: diverse shortest paths for bioimage analysis},
journal = {Bioinform.},
volume = {34},
number = {3},
pages = {538--540},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx621},
doi = {10.1093/BIOINFORMATICS/BTX621},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/UhlmannHHU18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/UppalMGJ18,
author = {Karan Uppal and
Chunyu Ma and
Young{-}Mi Go and
Dean P. Jones},
title = {xMWAS: a data-driven integration and differential network analysis
tool},
journal = {Bioinform.},
volume = {34},
number = {4},
pages = {701--702},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx656},
doi = {10.1093/BIOINFORMATICS/BTX656},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/UppalMGJ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/UrrutiaCZZJ18,
author = {Eugene Urrutia and
Hao Chen and
Zilu Zhou and
Nancy Ruonan Zhang and
Yuchao Jiang},
title = {Integrative pipeline for profiling {DNA} copy number and inferring
tumor phylogeny},
journal = {Bioinform.},
volume = {34},
number = {12},
pages = {2126--2128},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty057},
doi = {10.1093/BIOINFORMATICS/BTY057},
timestamp = {Thu, 28 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/UrrutiaCZZJ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/UrsuBTWYNK18,
author = {Oana Ursu and
Nathan Boley and
Maryna Taranova and
Y. X. Rachel Wang and
Galip G{\"{u}}rkan Yardimci and
William Stafford Noble and
Anshul Kundaje},
title = {GenomeDISCO: a concordance score for chromosome conformation capture
experiments using random walks on contact map graphs},
journal = {Bioinform.},
volume = {34},
number = {16},
pages = {2701--2707},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty164},
doi = {10.1093/BIOINFORMATICS/BTY164},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/UrsuBTWYNK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/UsmanovaBBEGKLM18,
author = {Dinara R. Usmanova and
Natalya S. Bogatyreva and
Joan Ari{\~{n}}o Bernad and
Aleksandra A. Eremina and
Anastasiya A. Gorshkova and
German M. Kanevskiy and
Lyubov R. Lonishin and
Alexander V. Meister and
Alisa G. Yakupova and
Fyodor A. Kondrashov and
Dmitry N. Ivankov},
title = {Self-consistency test reveals systematic bias in programs for prediction
change of stability upon mutation},
journal = {Bioinform.},
volume = {34},
number = {21},
pages = {3653--3658},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty340},
doi = {10.1093/BIOINFORMATICS/BTY340},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/UsmanovaBBEGKLM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Valdebenito-Maturana18,
author = {Braulio Valdebenito{-}Maturana and
Gonzalo Riadi},
title = {TEcandidates: prediction of genomic origin of expressed transposable
elements using RNA-seq data},
journal = {Bioinform.},
volume = {34},
number = {22},
pages = {3915--3916},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty423},
doi = {10.1093/BIOINFORMATICS/BTY423},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Valdebenito-Maturana18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VanJGF18,
author = {Phu Van and
Wenxin Jiang and
Raphael Gottardo and
Greg Finak},
title = {ggCyto: next generation open-source visualization software for cytometry},
journal = {Bioinform.},
volume = {34},
number = {22},
pages = {3951--3953},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty441},
doi = {10.1093/BIOINFORMATICS/BTY441},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VanJGF18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VargaT18,
author = {Julia Varga and
G{\'{a}}bor E. Tusn{\'{a}}dy},
title = {TMCrys: predict propensity of success for transmembrane protein crystallization},
journal = {Bioinform.},
volume = {34},
number = {18},
pages = {3126--3130},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty342},
doi = {10.1093/BIOINFORMATICS/BTY342},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/VargaT18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VeltriKS18,
author = {Daniel Veltri and
Uday Kamath and
Amarda Shehu},
title = {Deep learning improves antimicrobial peptide recognition},
journal = {Bioinform.},
volume = {34},
number = {16},
pages = {2740--2747},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty179},
doi = {10.1093/BIOINFORMATICS/BTY179},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VeltriKS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VervierM18,
author = {Kevin Vervier and
Jacob J. Michaelson},
title = {TiSAn: estimating tissue-specific effects of coding and non-coding
variants},
journal = {Bioinform.},
volume = {34},
number = {18},
pages = {3061--3068},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty301},
doi = {10.1093/BIOINFORMATICS/BTY301},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/VervierM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VesztrocyDR18,
author = {Alex Warwick Vesztrocy and
Christophe Dessimoz and
Henning Redestig},
title = {Prioritising candidate genes causing {QTL} using hierarchical orthologous
groups},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i612--i619},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty615},
doi = {10.1093/BIOINFORMATICS/BTY615},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VesztrocyDR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VetrovskyBM18,
author = {Tom{\'{a}}s Vetrovsk{\'{y}} and
Petr Baldrian and
Daniel C. Morais},
title = {{SEED} 2: a user-friendly platform for amplicon high-throughput sequencing
data analyses},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {2292--2294},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty071},
doi = {10.1093/BIOINFORMATICS/BTY071},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VetrovskyBM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VijayanM18,
author = {Vipin Vijayan and
Tijana Milenkovic},
title = {Aligning dynamic networks with DynaWAVE},
journal = {Bioinform.},
volume = {34},
number = {10},
pages = {1795--1798},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx841},
doi = {10.1093/BIOINFORMATICS/BTX841},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VijayanM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VijayanM18a,
author = {Vipin Vijayan and
Tijana Milenkovic},
title = {Aligning dynamic networks with DynaWAVE},
journal = {Bioinform.},
volume = {34},
number = {11},
pages = {1980},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty038},
doi = {10.1093/BIOINFORMATICS/BTY038},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/VijayanM18a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ViricelGSB18,
author = {Cl{\'{e}}ment Viricel and
Simon de Givry and
Thomas Schiex and
Sophie Barbe},
title = {Cost function network-based design of protein-protein interactions:
predicting changes in binding affinity},
journal = {Bioinform.},
volume = {34},
number = {15},
pages = {2581--2589},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty092},
doi = {10.1093/BIOINFORMATICS/BTY092},
timestamp = {Thu, 23 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ViricelGSB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VoP18,
author = {Nam S. Vo and
Vinhthuy Phan},
title = {Leveraging known genomic variants to improve detection of variants,
especially close-by Indels},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {2918--2926},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty183},
doi = {10.1093/BIOINFORMATICS/BTY183},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/VoP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VogesOH18,
author = {Jan Voges and
J{\"{o}}rn Ostermann and
Mikel Hernaez},
title = {{CALQ:} compression of quality values of aligned sequencing data},
journal = {Bioinform.},
volume = {34},
number = {10},
pages = {1650--1658},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx737},
doi = {10.1093/BIOINFORMATICS/BTX737},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VogesOH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VolpeMGS18,
author = {Massimiliano Volpe and
Marco Miralto and
Stefano Gustincich and
Remo Sanges},
title = {ClusterScan: simple and generalistic identification of genomic clusters},
journal = {Bioinform.},
volume = {34},
number = {22},
pages = {3921--3923},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty486},
doi = {10.1093/BIOINFORMATICS/BTY486},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/VolpeMGS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VuGSKR18,
author = {Duong Vu and
Sonja Georgievska and
Szaniszlo Szoke and
Arnold Kuzniar and
Vincent Robert},
title = {fMLC: fast multi-level clustering and visualization of large molecular
datasets},
journal = {Bioinform.},
volume = {34},
number = {9},
pages = {1577--1579},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx810},
doi = {10.1093/BIOINFORMATICS/BTX810},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VuGSKR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VuWKNWPR18,
author = {Trung{-}Nghia Vu and
Quin F. Wills and
Krishna R. Kalari and
Nifang Niu and
Liewei Wang and
Yudi Pawitan and
Mattias Rantalainen},
title = {Isoform-level gene expression patterns in single-cell RNA-sequencing
data},
journal = {Bioinform.},
volume = {34},
number = {14},
pages = {2392--2400},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty100},
doi = {10.1093/BIOINFORMATICS/BTY100},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/VuWKNWPR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WalkerPOBSWM18,
author = {Mark A. Walker and
Chandra Sekhar Pedamallu and
Akinyemi I. Ojesina and
Susan Bullman and
Ted Sharpe and
Christopher W. Whelan and
Matthew Meyerson},
title = {{GATK} PathSeq: a customizable computational tool for the discovery
and identification of microbial sequences in libraries from eukaryotic
hosts},
journal = {Bioinform.},
volume = {34},
number = {24},
pages = {4287--4289},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty501},
doi = {10.1093/BIOINFORMATICS/BTY501},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WalkerPOBSWM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WandyNGDRH18,
author = {Joe Wandy and
Mu Niu and
Diana Giurghita and
R{\'{o}}n{\'{a}}n Daly and
Simon Rogers and
Dirk Husmeier},
title = {ShinyKGode: an interactive application for {ODE} parameter inference
using gradient matching},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {2314--2315},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty089},
doi = {10.1093/BIOINFORMATICS/BTY089},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WandyNGDRH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WandyZHDBR18,
author = {Joe Wandy and
Yunfeng Zhu and
Justin J. J. van der Hooft and
R{\'{o}}n{\'{a}}n Daly and
Michael P. Barrett and
Simon Rogers},
title = {Ms2lda.org: web-based topic modelling for substructure discovery in
mass spectrometry},
journal = {Bioinform.},
volume = {34},
number = {2},
pages = {317--318},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx582},
doi = {10.1093/BIOINFORMATICS/BTX582},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WandyZHDBR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Wang18,
author = {Dapeng Wang},
title = {GCevobase: an evolution-based database for {GC} content in eukaryotic
genomes},
journal = {Bioinform.},
volume = {34},
number = {12},
pages = {2129--2131},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty068},
doi = {10.1093/BIOINFORMATICS/BTY068},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Wang18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangCMSGZ18,
author = {Zhenjia Wang and
Mete Civelek and
Clint L. Miller and
Nathan C. Sheffield and
Michael J. Guertin and
Chongzhi Zang},
title = {{BART:} a transcription factor prediction tool with query gene sets
or epigenomic profiles},
journal = {Bioinform.},
volume = {34},
number = {16},
pages = {2867--2869},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty194},
doi = {10.1093/BIOINFORMATICS/BTY194},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangCMSGZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangCY18,
author = {Zhezhen Wang and
John M. Cunningham and
Xinan Holly Yang},
title = {CisPi: a transcriptomic score for disclosing cis-acting disease-associated
lincRNAs},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i664--i670},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty574},
doi = {10.1093/BIOINFORMATICS/BTY574},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangCY18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangCYNRS0H18,
author = {Xiaoqian Wang and
Hong Chen and
Jingwen Yan and
Kwangsik Nho and
Shannon L. Risacher and
Andrew J. Saykin and
Li Shen and
Heng Huang},
title = {Quantitative trait loci identification for brain endophenotypes via
new additive model with random networks},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i866--i874},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty557},
doi = {10.1093/BIOINFORMATICS/BTY557},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangCYNRS0H18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangDH18,
author = {Xiaoqian Wang and
Kamran Ghasedi Dizaji and
Heng Huang},
title = {Conditional generative adversarial network for gene expression inference},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i603--i611},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty563},
doi = {10.1093/BIOINFORMATICS/BTY563},
timestamp = {Thu, 30 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangDH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangJWZZ18,
author = {Kaili Wang and
Yiren Jian and
Huiwen Wang and
Chen Zeng and
Yunjie Zhao},
title = {RBind: computational network method to predict {RNA} binding sites},
journal = {Bioinform.},
volume = {34},
number = {18},
pages = {3131--3136},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty345},
doi = {10.1093/BIOINFORMATICS/BTY345},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangJWZZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangLBW18,
author = {Liya Wang and
Zhenyuan Lu and
Peter Van Buren and
Doreen Ware},
title = {SciApps: a cloud-based platform for reproducible bioinformatics workflows},
journal = {Bioinform.},
volume = {34},
number = {22},
pages = {3917--3920},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty439},
doi = {10.1093/BIOINFORMATICS/BTY439},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangLBW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangLCZZSKIC18,
author = {Ching{-}Wei Wang and
Yu{-}Ching Lee and
Evelyne Calista and
Fan Zhou and
Hongtu Zhu and
Ryohei Suzuki and
Daisuke Komura and
Shumpei Ishikawa and
Shih{-}Ping Cheng},
title = {A benchmark for comparing precision medicine methods in thyroid cancer
diagnosis using tissue microarrays},
journal = {Bioinform.},
volume = {34},
number = {10},
pages = {1767--1773},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx838},
doi = {10.1093/BIOINFORMATICS/BTX838},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangLCZZSKIC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangLKM18,
author = {Zichen Wang and
Alexander Lachmann and
Alexandra B. Keenan and
Avi Ma'ayan},
title = {{L1000FWD:} fireworks visualization of drug-induced transcriptomic
signatures},
journal = {Bioinform.},
volume = {34},
number = {12},
pages = {2150--2152},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty060},
doi = {10.1093/BIOINFORMATICS/BTY060},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangLKM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangLTRMWH18,
author = {Y. X. Rachel Wang and
Ke Liu and
Elizabeth Theusch and
Jerome I Rotter and
Marisa W. Medina and
Michael S. Waterman and
Haiyan Huang},
title = {Generalized correlation measure using count statistics for gene expression
data with ordered samples},
journal = {Bioinform.},
volume = {34},
number = {4},
pages = {617--624},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx641},
doi = {10.1093/BIOINFORMATICS/BTX641},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangLTRMWH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangN18,
author = {Yaxuan Wang and
Luay Nakhleh},
title = {Towards an accurate and efficient heuristic for species/gene tree
co-estimation},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i697--i705},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty599},
doi = {10.1093/BIOINFORMATICS/BTY599},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangN18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangSSSXG18,
author = {Juexin Wang and
Robert Sheridan and
Sel{\c{c}}uk Onur S{\"{u}}mer and
Nikolaus Schultz and
Dong Xu and
Jianjiong Gao},
title = {{G2S:} a web-service for annotating genomic variants on 3D protein
structures},
journal = {Bioinform.},
volume = {34},
number = {11},
pages = {1949--1950},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty047},
doi = {10.1093/BIOINFORMATICS/BTY047},
timestamp = {Thu, 23 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangSSSXG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangWLL18,
author = {Anqi Wang and
Zhanyu Wang and
Zheng Li and
Lei M. Li},
title = {{BAUM:} improving genome assembly by adaptive unique mapping and local
overlap-layout-consensus approach},
journal = {Bioinform.},
volume = {34},
number = {12},
pages = {2019--2028},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty020},
doi = {10.1093/BIOINFORMATICS/BTY020},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangWLL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangWLXLB18,
author = {Zi Wang and
Dali Wang and
Chengcheng Li and
Yichi Xu and
Husheng Li and
Zhirong Bao},
title = {Deep reinforcement learning of cell movement in the early stage of
C.elegans embryogenesis},
journal = {Bioinform.},
volume = {34},
number = {18},
pages = {3169--3177},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty323},
doi = {10.1093/BIOINFORMATICS/BTY323},
timestamp = {Thu, 17 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangWLXLB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangXDHCZCX18,
author = {Dongwei Wang and
Chunling Xu and
Shanwen Ding and
Xin Huang and
Xi Cheng and
Chao Zhang and
Chun Chen and
Hui Xie},
title = {Identification and function of {FAR} protein family genes from a transcriptome
analysis of Aphelenchoides besseyi},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {2936--2943},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty209},
doi = {10.1093/BIOINFORMATICS/BTY209},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangXDHCZCX18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangYLMHRZACSSL18,
author = {Jiawei Wang and
Bingjiao Yang and
Andr{\'{e}} Leier and
Tatiana T. Marquez{-}Lago and
Morihiro Hayashida and
Andrea Rocker and
Yanju Zhang and
Tatsuya Akutsu and
Kuo{-}Chen Chou and
Richard A. Strugnell and
Jiangning Song and
Trevor Lithgow},
title = {Bastion6: a bioinformatics approach for accurate prediction of type
{VI} secreted effectors},
journal = {Bioinform.},
volume = {34},
number = {15},
pages = {2546--2555},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty155},
doi = {10.1093/BIOINFORMATICS/BTY155},
timestamp = {Fri, 23 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangYLMHRZACSSL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangYW18,
author = {Anliang Wang and
Xiaolong Yan and
Zhijun Wei},
title = {ImagePy: an open-source, Python-based and platform-independent software
package for bioimage analysis},
journal = {Bioinform.},
volume = {34},
number = {18},
pages = {3238--3240},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty313},
doi = {10.1093/BIOINFORMATICS/BTY313},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangYW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WardSF18,
author = {Lewis M. Ward and
Patrick M. Shih and
Woodward W. Fischer},
title = {MetaPOAP: presence or absence of metabolic pathways in metagenome-assembled
genomes},
journal = {Bioinform.},
volume = {34},
number = {24},
pages = {4284--4286},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty510},
doi = {10.1093/BIOINFORMATICS/BTY510},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WardSF18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WarnkeHU18,
author = {Tom Warnke and
Tobias Helms and
Adelinde M. Uhrmacher},
title = {Reproducible and flexible simulation experiments with ML-Rules and
{SESSL}},
journal = {Bioinform.},
volume = {34},
number = {8},
pages = {1424--1427},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx741},
doi = {10.1093/BIOINFORMATICS/BTX741},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WarnkeHU18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WeberLDMQMOWKME18,
author = {Nick Weber and
David Liou and
Jennifer Dommer and
Philip MacMenamin and
Mariam Qui{\~{n}}ones and
Ian Misner and
Andrew J. Oler and
Joe Wan and
Lewis Kim and
Meghan Coakley McCarthy and
Samuel Ezeji and
Karlynn Noble and
Darrell E. Hurt},
title = {Nephele: a cloud platform for simplified, standardized and reproducible
microbiome data analysis},
journal = {Bioinform.},
volume = {34},
number = {8},
pages = {1411--1413},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx617},
doi = {10.1093/BIOINFORMATICS/BTX617},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WeberLDMQMOWKME18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WeiJYXZJ18,
author = {Lin Wei and
Zhilin Jin and
Shengjie Yang and
Yanxun Xu and
Yitan Zhu and
Yuan Ji},
title = {TCGA-assembler 2: software pipeline for retrieval and processing of
{TCGA/CPTAC} data},
journal = {Bioinform.},
volume = {34},
number = {9},
pages = {1615--1617},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx812},
doi = {10.1093/BIOINFORMATICS/BTX812},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WeiJYXZJ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WeiPFMHL18,
author = {Chih{-}Hsuan Wei and
Lon Phan and
Juliana Feltz and
Rama Maiti and
Tim Hefferon and
Zhiyong Lu},
title = {tmVar 2.0: integrating genomic variant information from literature
with dbSNP and ClinVar for precision medicine},
journal = {Bioinform.},
volume = {34},
number = {1},
pages = {80--87},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx541},
doi = {10.1093/BIOINFORMATICS/BTX541},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WeiPFMHL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WeiZCSS18,
author = {Leyi Wei and
Chen Zhou and
Huangrong Chen and
Jiangning Song and
Ran Su},
title = {ACPred-FL: a sequence-based predictor using effective feature representation
to improve the prediction of anti-cancer peptides},
journal = {Bioinform.},
volume = {34},
number = {23},
pages = {4007--4016},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty451},
doi = {10.1093/BIOINFORMATICS/BTY451},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WeiZCSS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WeiZFLW18,
author = {Zheng Wei and
Wei Zhang and
Huan Fang and
Yanda Li and
Xiaowo Wang},
title = {esATAC: an easy-to-use systematic pipeline for ATAC-seq data analysis},
journal = {Bioinform.},
volume = {34},
number = {15},
pages = {2664--2665},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty141},
doi = {10.1093/BIOINFORMATICS/BTY141},
timestamp = {Mon, 01 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WeiZFLW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WeinrebWK18,
author = {Caleb Weinreb and
Samuel L. Wolock and
Allon M. Klein},
title = {{SPRING:} a kinetic interface for visualizing high dimensional single-cell
expression data},
journal = {Bioinform.},
volume = {34},
number = {7},
pages = {1246--1248},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx792},
doi = {10.1093/BIOINFORMATICS/BTX792},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WeinrebWK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WelshFPMIBTPS18,
author = {Ciaran M. Welsh and
Nicola Fullard and
Carole J. Proctor and
Alvaro Martinez{-}Guimera and
Robert J. Isfort and
Charles C. Bascom and
Ryan Tasseff and
Stefan A. Przyborski and
Daryl P. Shanley},
title = {PyCoTools: a Python toolbox for {COPASI}},
journal = {Bioinform.},
volume = {34},
number = {21},
pages = {3702--3710},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty409},
doi = {10.1093/BIOINFORMATICS/BTY409},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WelshFPMIBTPS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WenCZLL18,
author = {Ming Wen and
Peisheng Cong and
Zhimin Zhang and
Hongmei Lu and
Tonghua Li},
title = {DeepMirTar: a deep-learning approach for predicting human miRNA targets},
journal = {Bioinform.},
volume = {34},
number = {22},
pages = {3781--3787},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty424},
doi = {10.1093/BIOINFORMATICS/BTY424},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WenCZLL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WhelanIB18,
author = {Simon Whelan and
Iker Irisarri and
Fabien Burki},
title = {{PREQUAL:} detecting non-homologous characters in sets of unaligned
homologous sequences},
journal = {Bioinform.},
volume = {34},
number = {22},
pages = {3929--3930},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty448},
doi = {10.1093/BIOINFORMATICS/BTY448},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WhelanIB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WilksGNL18,
author = {Christopher Wilks and
Phani Gaddipati and
Abhinav Nellore and
Ben Langmead},
title = {Snaptron: querying splicing patterns across tens of thousands of RNA-seq
samples},
journal = {Bioinform.},
volume = {34},
number = {1},
pages = {114--116},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx547},
doi = {10.1093/BIOINFORMATICS/BTX547},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WilksGNL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WiltonLFS18,
author = {Richard Wilton and
Xin Li and
Andrew P. Feinberg and
Alexander S. Szalay},
title = {Arioc: GPU-accelerated alignment of short bisulfite-treated reads},
journal = {Bioinform.},
volume = {34},
number = {15},
pages = {2673--2675},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty167},
doi = {10.1093/BIOINFORMATICS/BTY167},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WiltonLFS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WinterWHAZC18,
author = {David J. Winter and
Steven H. Wu and
Abigail A. Howell and
Ricardo B. R. Azevedo and
Rebecca A. Zufall and
Reed A. Cartwright},
title = {accuMUlate: a mutation caller designed for mutation accumulation experiments},
journal = {Bioinform.},
volume = {34},
number = {15},
pages = {2659--2660},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty165},
doi = {10.1093/BIOINFORMATICS/BTY165},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WinterWHAZC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WongCCW18,
author = {Nathan W. Wong and
Yuhao Chen and
Shuai Chen and
Xiaowei Wang},
title = {OncomiR: an online resource for exploring pan-cancer microRNA dysregulation},
journal = {Bioinform.},
volume = {34},
number = {4},
pages = {713--715},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx627},
doi = {10.1093/BIOINFORMATICS/BTX627},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WongCCW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WongNBSL18,
author = {Kim Wong and
Jos{\'{e}} Fern{\'{a}}ndez Navarro and
Ludvig Bergenstr{\aa}hle and
Patrik L. St{\aa}hl and
Joakim Lundeberg},
title = {{ST} Spot Detector: a web-based application for automatic spot and
tissue detection for spatial Transcriptomics image datasets},
journal = {Bioinform.},
volume = {34},
number = {11},
pages = {1966--1968},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty030},
doi = {10.1093/BIOINFORMATICS/BTY030},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WongNBSL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WosteD18,
author = {Marius W{\"{o}}ste and
Martin Dugas},
title = {{VIPER:} a web application for rapid expert review of variant calls},
journal = {Bioinform.},
volume = {34},
number = {11},
pages = {1928--1929},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty022},
doi = {10.1093/BIOINFORMATICS/BTY022},
timestamp = {Mon, 01 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WosteD18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WozniakPSVK18,
author = {Pawel P. Wozniak and
J. Pelc and
M. Skrzypecki and
Gert Vriend and
Malgorzata Kotulska},
title = {Bio-knowledge-based filters improve residue-residue contact prediction
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volume = {34},
number = {21},
pages = {3675--3683},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty416},
doi = {10.1093/BIOINFORMATICS/BTY416},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WozniakPSVK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WuLWW18,
author = {Lin Wu and
Min Li and
Jianxin Wang and
Fang{-}Xiang Wu},
title = {CytoCtrlAnalyser: a Cytoscape app for biomolecular network controllability
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journal = {Bioinform.},
volume = {34},
number = {8},
pages = {1428--1430},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx764},
doi = {10.1093/BIOINFORMATICS/BTX764},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WuLWW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WuS18,
author = {Yue Wu and
Sriram Sankararaman},
title = {A scalable estimator of {SNP} heritability for biobank-scale data},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i187--i194},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty253},
doi = {10.1093/BIOINFORMATICS/BTY253},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WuS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WuTHHLTC18,
author = {Han{-}Ming Wu and
Yin{-}Jing Tien and
Meng{-}Ru Ho and
Hai{-}Gwo Hwu and
Wen{-}Chang Lin and
Mi{-}Hua Tao and
Chun{-}Houh Chen},
title = {Covariate-adjusted heatmaps for visualizing biological data via correlation
decomposition},
journal = {Bioinform.},
volume = {34},
number = {20},
pages = {3529--3538},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty335},
doi = {10.1093/BIOINFORMATICS/BTY335},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WuTHHLTC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WuZSW18,
author = {Zhijin Wu and
Yi Zhang and
Michael L. Stitzel and
Hao Wu},
title = {Two-phase differential expression analysis for single cell RNA-seq},
journal = {Bioinform.},
volume = {34},
number = {19},
pages = {3340--3348},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty329},
doi = {10.1093/BIOINFORMATICS/BTY329},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WuZSW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WuZWPHCKZ18,
author = {Jiansheng Wu and
Qiuming Zhang and
Weijian Wu and
Tao Pang and
Haifeng Hu and
Wallace K. B. Chan and
Xiaoyan Ke and
Yang Zhang},
title = {{WDL-RF:} predicting bioactivities of ligand molecules acting with
{G} protein-coupled receptors by combining weighted deep learning
and random forest},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {2271--2282},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty070},
doi = {10.1093/BIOINFORMATICS/BTY070},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WuZWPHCKZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/X18,
title = {{ISMB} 2018 {PROCEEDINGS} {PAPERS} {COMMITTEE}},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i1},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty359},
doi = {10.1093/BIOINFORMATICS/BTY359},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/X18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/X18a,
title = {Author Index},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i593--i594},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty509},
doi = {10.1093/BIOINFORMATICS/BTY509},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/X18a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XiaoBS18,
author = {Jinfeng Xiao and
Charles Blatti and
Saurabh Sinha},
title = {SigMat: a classification scheme for gene signature matching},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i547--i554},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty251},
doi = {10.1093/BIOINFORMATICS/BTY251},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XiaoBS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XiaoLLCD18,
author = {Qiu Xiao and
Jiawei Luo and
Cheng Liang and
Jie Cai and
Pingjian Ding},
title = {A graph regularized non-negative matrix factorization method for identifying
microRNA-disease associations},
journal = {Bioinform.},
volume = {34},
number = {2},
pages = {239--248},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx545},
doi = {10.1093/BIOINFORMATICS/BTX545},
timestamp = {Mon, 21 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XiaoLLCD18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XieZO18,
author = {Zhengwei Xie and
Tianyu Zhang and
Qi Ouyang},
title = {Genome-scale fluxes predicted under the guidance of enzyme abundance
using a novel hyper-cube shrink algorithm},
journal = {Bioinform.},
volume = {34},
number = {3},
pages = {502--510},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx574},
doi = {10.1093/BIOINFORMATICS/BTX574},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XieZO18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XingQYLZFXHP18,
author = {Wenhui Xing and
Junsheng Qi and
Xiaohui Yuan and
Lin Li and
Xiaoyu Zhang and
Yuhua Fu and
Shengwu Xiong and
Lun Hu and
Jing Peng},
title = {A gene-phenotype relationship extraction pipeline from the biomedical
literature using a representation learning approach},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i386--i394},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty263},
doi = {10.1093/BIOINFORMATICS/BTY263},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/XingQYLZFXHP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XuFLWW18,
author = {Clerk Nuo Xu and
Dongfang Fu and
Shiang Li and
Yuxuan Wang and
Aloysius Wong},
title = {GCPred: a web tool for guanylyl cyclase functional centre prediction
from amino acid sequence},
journal = {Bioinform.},
volume = {34},
number = {12},
pages = {2134--2135},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty067},
doi = {10.1093/BIOINFORMATICS/BTY067},
timestamp = {Sun, 21 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/XuFLWW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XuFSWD18,
author = {Chao Xu and
Jian Fang and
Hui Shen and
Yu{-}Ping Wang and
Hong{-}Wen Deng},
title = {{EPS-LASSO:} test for high-dimensional regression under extreme phenotype
sampling of continuous traits},
journal = {Bioinform.},
volume = {34},
number = {12},
pages = {1996--2003},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty042},
doi = {10.1093/BIOINFORMATICS/BTY042},
timestamp = {Fri, 02 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XuFSWD18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XuZLHSLLDZJLJLZ18,
author = {Jing Xu and
Linna Zhao and
Di Liu and
Simeng Hu and
Xiuling Song and
Jin Li and
Hongchao Lv and
Lian Duan and
Mingming Zhang and
Qinghua Jiang and
Guiyou Liu and
Shuilin Jin and
Mingzhi Liao and
Meng Zhang and
Rennan Feng and
Fanwu Kong and
Liangde Xu and
Yongshuai Jiang},
title = {{EWAS:} epigenome-wide association study software 2.0},
journal = {Bioinform.},
volume = {34},
number = {15},
pages = {2657--2658},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty163},
doi = {10.1093/BIOINFORMATICS/BTY163},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/XuZLHSLLDZJLJLZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YanBGCW18,
author = {Aimin Yan and
Yuguang Ban and
Zhen Gao and
Xi Chen and
Lily Wang},
title = {PathwaySplice: an {R} package for unbiased pathway analysis of alternative
splicing in RNA-Seq data},
journal = {Bioinform.},
volume = {34},
number = {18},
pages = {3220--3222},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty317},
doi = {10.1093/BIOINFORMATICS/BTY317},
timestamp = {Fri, 06 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YanBGCW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YanFC18,
author = {Qi Yan and
Zhou Fang and
Wei Chen},
title = {KMgene: a unified {R} package for gene-based association analysis
for complex traits},
journal = {Bioinform.},
volume = {34},
number = {12},
pages = {2144--2146},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty066},
doi = {10.1093/BIOINFORMATICS/BTY066},
timestamp = {Mon, 14 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YanFC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YanGZ18,
author = {Hongwei Yan and
Andreas D. M. Gunawan and
Louxin Zhang},
title = {S-Cluster++: a fast program for solving the cluster containment problem
for phylogenetic networks},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i680--i686},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty594},
doi = {10.1093/BIOINFORMATICS/BTY594},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YanGZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YanH18,
author = {Yumeng Yan and
Sheng{-}You Huang},
title = {{RRDB:} a comprehensive and non-redundant benchmark for {RNA-RNA}
docking and scoring},
journal = {Bioinform.},
volume = {34},
number = {3},
pages = {453--458},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx615},
doi = {10.1093/BIOINFORMATICS/BTX615},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YanH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangCL18,
author = {Cheng{-}Hong Yang and
Li{-}Yeh Chuang and
Yu{-}Da Lin},
title = {Multiobjective multifactor dimensionality reduction to detect {SNP-SNP}
interactions},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {2228--2236},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty076},
doi = {10.1093/BIOINFORMATICS/BTY076},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangCL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangFQXS18,
author = {Yang Yang and
Xiaofeng Fu and
Wenhao Qu and
Yiqun Xiao and
Hong{-}Bin Shen},
title = {MiRGOFS: a GO-based functional similarity measurement for miRNAs,
with applications to the prediction of miRNA subcellular localization
and miRNA-disease association},
journal = {Bioinform.},
volume = {34},
number = {20},
pages = {3547--3556},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty343},
doi = {10.1093/BIOINFORMATICS/BTY343},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangFQXS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangG18,
author = {Zhi{-}Kai Yang and
Feng Gao},
title = {The systematic analysis of ultraconserved genomic regions in the budding
yeast},
journal = {Bioinform.},
volume = {34},
number = {1},
pages = {180},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx751},
doi = {10.1093/BIOINFORMATICS/BTX751},
timestamp = {Thu, 25 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangG18a,
author = {Zhi{-}Kai Yang and
Feng Gao},
title = {The systematic analysis of ultraconserved genomic regions in the budding
yeast},
journal = {Bioinform.},
volume = {34},
number = {3},
pages = {361--366},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx619},
doi = {10.1093/BIOINFORMATICS/BTX619},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangG18a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangLZWG18,
author = {Zhi{-}Kai Yang and
Hao Luo and
Yanming Zhang and
Baijing Wang and
Feng Gao},
title = {Recombinational DSBs-intersected genes converge on specific disease-
and adaptability-related pathways},
journal = {Bioinform.},
volume = {34},
number = {20},
pages = {3421--3426},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty376},
doi = {10.1093/BIOINFORMATICS/BTY376},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangLZWG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangNWIWWPCSZC18,
author = {Yang Yang and
Katherine E. Niehaus and
Timothy M. Walker and
Zamin Iqbal and
A. Sarah Walker and
Daniel J. Wilson and
Tim E. A. Peto and
Derrick W. Crook and
E. Grace Smith and
Tingting Zhu and
David A. Clifton},
title = {Machine learning for classifying tuberculosis drug-resistance from
{DNA} sequencing data},
journal = {Bioinform.},
volume = {34},
number = {10},
pages = {1666--1671},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx801},
doi = {10.1093/BIOINFORMATICS/BTX801},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangNWIWWPCSZC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangS18,
author = {Jing Yang and
Hong{-}Bin Shen},
title = {MemBrain-contact 2.0: a new two-stage machine learning model for the
prediction enhancement of transmembrane protein residue contacts in
the full chain},
journal = {Bioinform.},
volume = {34},
number = {2},
pages = {230--238},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx593},
doi = {10.1093/BIOINFORMATICS/BTX593},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangWBA18,
author = {Kevin K. Yang and
Zachary Wu and
Claire N. Bedbrook and
Frances H. Arnold},
title = {Learned protein embeddings for machine learning},
journal = {Bioinform.},
volume = {34},
number = {15},
pages = {2642--2648},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty178},
doi = {10.1093/BIOINFORMATICS/BTY178},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangWBA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangWBA18a,
author = {Kevin K. Yang and
Zachary Wu and
Claire N. Bedbrook and
Frances H. Arnold},
title = {Learned protein embeddings for machine learning},
journal = {Bioinform.},
volume = {34},
number = {23},
pages = {4138},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty455},
doi = {10.1093/BIOINFORMATICS/BTY455},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangWBA18a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangYZXZWZ18,
author = {Cheng Yang and
Longshu Yang and
Man Zhou and
Haoling Xie and
Chengjiu Zhang and
May D. Wang and
Huaiqiu Zhu},
title = {LncADeep: an ab initio lncRNA identification and functional annotation
tool based on deep learning},
journal = {Bioinform.},
volume = {34},
number = {22},
pages = {3825--3834},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty428},
doi = {10.1093/BIOINFORMATICS/BTY428},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangYZXZWZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YeLJLW18,
author = {Congting Ye and
Yuqi Long and
Guoli Ji and
Qingshun Quinn Li and
Xiaohui Wu},
title = {APAtrap: identification and quantification of alternative polyadenylation
sites from RNA-seq data},
journal = {Bioinform.},
volume = {34},
number = {11},
pages = {1841--1849},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty029},
doi = {10.1093/BIOINFORMATICS/BTY029},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YeLJLW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YeoCWCB18,
author = {Sarah Yeo and
Lauren Coombe and
Ren{\'{e}} L. Warren and
Justin Chu and
Inan{\c{c}} Birol},
title = {{ARCS:} scaffolding genome drafts with linked reads},
journal = {Bioinform.},
volume = {34},
number = {5},
pages = {725--731},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx675},
doi = {10.1093/BIOINFORMATICS/BTX675},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YeoCWCB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YiRZAL18,
author = {Haidong Yi and
Ayush T. Raman and
Han Zhang and
Genevera I. Allen and
Zhandong Liu},
title = {Detecting hidden batch factors through data-adaptive adjustment for
biological effects},
journal = {Bioinform.},
volume = {34},
number = {7},
pages = {1141--1147},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx635},
doi = {10.1093/BIOINFORMATICS/BTX635},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YiRZAL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YinJCLYCTZ18,
author = {Xiaole Yin and
Xiaotao Jiang and
Benli Chai and
Liguan Li and
Ying Yang and
James R. Cole and
James M. Tiedje and
Tong Zhang},
title = {ARGs-OAP v2.0 with an expanded {SARG} database and Hidden Markov Models
for enhancement characterization and quantification of antibiotic
resistance genes in environmental metagenomes},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {2263--2270},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty053},
doi = {10.1093/BIOINFORMATICS/BTY053},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YinJCLYCTZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YingLSL18,
author = {Dingge Ying and
Mulin Jun Li and
Pak Chung Sham and
Miao{-}Xin Li},
title = {A powerful approach reveals numerous expression quantitative trait
haplotypes in multiple tissues},
journal = {Bioinform.},
volume = {34},
number = {18},
pages = {3145--3150},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty318},
doi = {10.1093/BIOINFORMATICS/BTY318},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YingLSL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YipCPJTYY18,
author = {Danny Kit{-}Sang Yip and
Landon L. Chan and
Iris K. Pang and
Wei Jiang and
Nelson L. S. Tang and
Weichuan Yu and
Kevin Y. Yip},
title = {A network approach to exploring the functional basis of gene-gene
epistatic interactions in disease susceptibility},
journal = {Bioinform.},
volume = {34},
number = {10},
pages = {1741--1749},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty005},
doi = {10.1093/BIOINFORMATICS/BTY005},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YipCPJTYY18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YonesSM18,
author = {Cristian A. Yones and
Georgina Stegmayer and
Diego H. Milone},
title = {Genome-wide pre-miRNA discovery from few labeled examples},
journal = {Bioinform.},
volume = {34},
number = {4},
pages = {541--549},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx612},
doi = {10.1093/BIOINFORMATICS/BTX612},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YonesSM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YoshizoeTT18,
author = {Kazuki Yoshizoe and
Aika Terada and
Koji Tsuda},
title = {{MP-LAMP:} parallel detection of statistically significant multi-loci
markers on cloud platforms},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {3047--3049},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty219},
doi = {10.1093/BIOINFORMATICS/BTY219},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YoshizoeTT18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YouZXSMZ18,
author = {Ronghui You and
Zihan Zhang and
Yi Xiong and
Fengzhu Sun and
Hiroshi Mamitsuka and
Shanfeng Zhu},
title = {GOLabeler: improving sequence-based large-scale protein function prediction
by learning to rank},
journal = {Bioinform.},
volume = {34},
number = {14},
pages = {2465--2473},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty130},
doi = {10.1093/BIOINFORMATICS/BTY130},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YouZXSMZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Yu18,
author = {Guangchuang Yu},
title = {Using meshes for MeSH term enrichment and semantic analyses},
journal = {Bioinform.},
volume = {34},
number = {21},
pages = {3766--3767},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty410},
doi = {10.1093/BIOINFORMATICS/BTY410},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Yu18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuFPCKS18,
author = {Kun{-}Hsing Yu and
Michael R. Fitzpatrick and
Luke Pappas and
Warren Chan and
Jessica Kung and
Michael Snyder},
title = {Omics AnalySIs System for PRecision Oncology {(OASISPRO):} a web-based
omics analysis tool for clinical phenotype prediction},
journal = {Bioinform.},
volume = {34},
number = {2},
pages = {319--320},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx572},
doi = {10.1093/BIOINFORMATICS/BTX572},
timestamp = {Mon, 15 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuFPCKS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuJWZL18,
author = {Guoxian Yu and
Yuan Jiang and
Jun Wang and
Hao Zhang and
Haiwei Luo},
title = {{BMC3C:} binning metagenomic contigs using codon usage, sequence composition
and read coverage},
journal = {Bioinform.},
volume = {34},
number = {24},
pages = {4172--4179},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty519},
doi = {10.1093/BIOINFORMATICS/BTY519},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuJWZL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuOY18,
author = {Yiming Yu and
Yidan Ouyang and
Wen Yao},
title = {shinyCircos: an R/Shiny application for interactive creation of Circos
plot},
journal = {Bioinform.},
volume = {34},
number = {7},
pages = {1229--1231},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx763},
doi = {10.1093/BIOINFORMATICS/BTX763},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuOY18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZakeriSAEM18,
author = {Pooya Zakeri and
Jaak Simm and
Adam Arany and
Sarah ElShal and
Yves Moreau},
title = {Gene prioritization using Bayesian matrix factorization with genomic
and phenotypic side information},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i447--i456},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty289},
doi = {10.1093/BIOINFORMATICS/BTY289},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZakeriSAEM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZengHZ18,
author = {Ping Zeng and
Xingjie Hao and
Xiang Zhou},
title = {Pleiotropic mapping and annotation selection in genome-wide association
studies with penalized Gaussian mixture models},
journal = {Bioinform.},
volume = {34},
number = {16},
pages = {2797--2807},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty204},
doi = {10.1093/BIOINFORMATICS/BTY204},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZengHZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZengLLZ18,
author = {Xiangxiang Zeng and
Li Liu and
Linyuan L{\"{u}} and
Quan Zou},
title = {Prediction of potential disease-associated microRNAs using structural
perturbation method},
journal = {Bioinform.},
volume = {34},
number = {14},
pages = {2425--2432},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty112},
doi = {10.1093/BIOINFORMATICS/BTY112},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZengLLZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhaiSCTM18,
author = {Jingjing Zhai and
Jie Song and
Qian Cheng and
Yunjia Tang and
Chuang Ma},
title = {{PEA:} an integrated {R} toolkit for plant epitranscriptome analysis},
journal = {Bioinform.},
volume = {34},
number = {21},
pages = {3747--3749},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty421},
doi = {10.1093/BIOINFORMATICS/BTY421},
timestamp = {Sun, 12 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhaiSCTM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangBRZCABI18,
author = {Peng Zhang and
Benedetta Bigio and
Franck Rapaport and
Shen{-}Ying Zhang and
Jean{-}Laurent Casanova and
Laurent Abel and
Bertrand Boisson and
Yuval Itan},
title = {PopViz: a webserver for visualizing minor allele frequencies and damage
prediction scores of human genetic variations},
journal = {Bioinform.},
volume = {34},
number = {24},
pages = {4307--4309},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty536},
doi = {10.1093/BIOINFORMATICS/BTY536},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangBRZCABI18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangFZ18,
author = {Wensheng Zhang and
Erik K. Flemington and
Kun Zhang},
title = {Driver gene mutations based clustering of tumors: methods and applications},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i404--i411},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty232},
doi = {10.1093/BIOINFORMATICS/BTY232},
timestamp = {Thu, 09 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangFZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangLHSXYHZY18,
author = {Xinyan Zhang and
Bingzong Li and
Huiying Han and
Sha Song and
Hongxia Xu and
Zixuan Yi and
Yating Hong and
Wenzhuo Zhuang and
Nengjun Yi},
title = {Pathway-structured predictive modeling for multi-level drug response
in multiple myeloma},
journal = {Bioinform.},
volume = {34},
number = {21},
pages = {3609--3615},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty436},
doi = {10.1093/BIOINFORMATICS/BTY436},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangLHSXYHZY18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangLLL18,
author = {Junpeng Zhang and
Lin Liu and
Jiuyong Li and
Thuc Duy Le},
title = {LncmiRSRN: identification and analysis of long non-coding {RNA} related
miRNA sponge regulatory network in human cancer},
journal = {Bioinform.},
volume = {34},
number = {24},
pages = {4232--4240},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty525},
doi = {10.1093/BIOINFORMATICS/BTY525},
timestamp = {Thu, 29 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangLLL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangMI18,
author = {Wei Zhang and
Jianzhu Ma and
Trey Ideker},
title = {Classifying tumors by supervised network propagation},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i484--i493},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty247},
doi = {10.1093/BIOINFORMATICS/BTY247},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangMI18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangOYHY18,
author = {Xiao{-}Fei Zhang and
Le Ou{-}Yang and
Shuo Yang and
Xiaohua Hu and
Hong Yan},
title = {DiffGraph: an {R} package for identifying gene network rewiring using
differential graphical models},
journal = {Bioinform.},
volume = {34},
number = {9},
pages = {1571--1573},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx836},
doi = {10.1093/BIOINFORMATICS/BTX836},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangOYHY18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangPW18,
author = {Juhua Zhang and
Wenbo Peng and
Lei Wang},
title = {LeNup: learning nucleosome positioning from {DNA} sequences with improved
convolutional neural networks},
journal = {Bioinform.},
volume = {34},
number = {10},
pages = {1705--1712},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty003},
doi = {10.1093/BIOINFORMATICS/BTY003},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangPW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangWC18,
author = {Jie Zhang and
Zhi Wei and
Jun Chen},
title = {A distance-based approach for testing the mediation effect of the
human microbiome},
journal = {Bioinform.},
volume = {34},
number = {11},
pages = {1875--1883},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty014},
doi = {10.1093/BIOINFORMATICS/BTY014},
timestamp = {Thu, 28 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangWC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangWYZM18,
author = {Ruochi Zhang and
Yuchuan Wang and
Yang Yang and
Yang Zhang and
Jian Ma},
title = {Predicting CTCF-mediated chromatin loops using {CTCF-MP}},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i133--i141},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty248},
doi = {10.1093/BIOINFORMATICS/BTY248},
timestamp = {Sat, 25 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangWYZM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangXRCF18,
author = {Ji Zhang and
Yanwen Xiong and
Lynn Rogers and
Glen P. Carter and
Nigel French},
title = {Genome-by-genome approach for fast bacterial genealogical relationship
evaluation},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {3025--3027},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty195},
doi = {10.1093/BIOINFORMATICS/BTY195},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangXRCF18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangXZY18,
author = {Le Zhang and
Ming Xiao and
Jingsong Zhou and
Jun Yu},
title = {Lineage-associated underrepresented permutations (LAUPs) of mammalian
genomic sequences based on a Jellyfish-based LAUPs analysis application
{(JBLA)}},
journal = {Bioinform.},
volume = {34},
number = {21},
pages = {3624--3630},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty392},
doi = {10.1093/BIOINFORMATICS/BTY392},
timestamp = {Fri, 06 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangXZY18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangZLWYD18,
author = {Yijia Zhang and
Wei Zheng and
Hongfei Lin and
Jian Wang and
Zhihao Yang and
Michel Dumontier},
title = {Drug-drug interaction extraction via hierarchical RNNs on sequence
and shortest dependency paths},
journal = {Bioinform.},
volume = {34},
number = {5},
pages = {828--835},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx659},
doi = {10.1093/BIOINFORMATICS/BTX659},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangZLWYD18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangZN18,
author = {Baohong Zhang and
Shanrong Zhao and
Isaac Neuhaus},
title = {canvasDesigner: a versatile interactive high-resolution scientific
multi-panel visualization toolkit},
journal = {Bioinform.},
volume = {34},
number = {19},
pages = {3419--3420},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty377},
doi = {10.1093/BIOINFORMATICS/BTY377},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangZN18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangZW18,
author = {Xiaohua Douglas Zhang and
Zhaozhi Zhang and
Dandan Wang},
title = {CGManalyzer: an {R} package for analyzing continuous glucose monitoring
studies},
journal = {Bioinform.},
volume = {34},
number = {9},
pages = {1609--1611},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx826},
doi = {10.1093/BIOINFORMATICS/BTX826},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangZW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangZW18a,
author = {Xiaohua Douglas Zhang and
Zhaozhi Zhang and
Dandan Wang},
title = {CGManalyzer: an {R} package for analyzing continuous glucose monitoring
studies},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {2340},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty144},
doi = {10.1093/BIOINFORMATICS/BTY144},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangZW18a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangZWLD18,
author = {Jingpu Zhang and
Zuping Zhang and
Zixiang Wang and
Yuting Liu and
Lei Deng},
title = {Ontological function annotation of long non-coding RNAs through hierarchical
multi-label classification},
journal = {Bioinform.},
volume = {34},
number = {10},
pages = {1750--1757},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx833},
doi = {10.1093/BIOINFORMATICS/BTX833},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangZWLD18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhaoCTW18,
author = {Rundong Zhao and
Zixuan Cang and
Yiying Tong and
Guo{-}Wei Wei},
title = {Protein pocket detection via convex hull surface evolution and associated
Reeb graph},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {i830--i837},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty598},
doi = {10.1093/BIOINFORMATICS/BTY598},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhaoCTW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhaoLLW18,
author = {Lu Zhao and
Zhimin Liu and
Sasha F. Levy and
Song Wu},
title = {Bartender: a fast and accurate clustering algorithm to count barcode
reads},
journal = {Bioinform.},
volume = {34},
number = {5},
pages = {739--747},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx655},
doi = {10.1093/BIOINFORMATICS/BTX655},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhaoLLW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhaoWARNSFPRC18,
author = {Sophie Zhao and
Ian Walsh and
Jodie L. Abrahams and
Louise Royle and
Terry Nguyen{-}Khuong and
Daniel Spencer and
Daryl L. Fernandes and
Nicolle H. Packer and
Pauline M. Rudd and
Matthew P. Campbell},
title = {GlycoStore: a database of retention properties for glycan analysis},
journal = {Bioinform.},
volume = {34},
number = {18},
pages = {3231--3232},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty319},
doi = {10.1093/BIOINFORMATICS/BTY319},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhaoWARNSFPRC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhaoWJLLL18,
author = {Liang Zhao and
Shaogui Wu and
Jiawen Jiang and
Wencui Li and
Jie Luo and
Jinyan Li},
title = {Novel overlapping subgraph clustering for the detection of antigen
epitopes},
journal = {Bioinform.},
volume = {34},
number = {12},
pages = {2061--2068},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty051},
doi = {10.1093/BIOINFORMATICS/BTY051},
timestamp = {Fri, 16 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhaoWJLLL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhaoZGX18,
author = {Yixiu Zhao and
Xiangrui Zeng and
Qiang Guo and
Min Xu},
title = {An integration of fast alignment and maximum-likelihood methods for
electron subtomogram averaging and classification},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i227--i236},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty267},
doi = {10.1093/BIOINFORMATICS/BTY267},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhaoZGX18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhengZ18,
author = {Xiaobin Zheng and
Yixian Zheng},
title = {CscoreTool: fast Hi-C compartment analysis at high resolution},
journal = {Bioinform.},
volume = {34},
number = {9},
pages = {1568--1570},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx802},
doi = {10.1093/BIOINFORMATICS/BTX802},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhengZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhongXWZLLZ18,
author = {Yingli Zhong and
Ping Xuan and
Xiao Wang and
Tiangang Zhang and
Jianzhong Li and
Yong Liu and
Weixiong Zhang},
title = {A non-negative matrix factorization based method for predicting disease-associated
miRNAs in miRNA-disease bilayer network},
journal = {Bioinform.},
volume = {34},
number = {2},
pages = {267--277},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx546},
doi = {10.1093/BIOINFORMATICS/BTX546},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhongXWZLLZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhouHDYWS18,
author = {Jiajian Zhou and
Yile Huang and
Yingzhe Ding and
Jie Yuan and
Huating Wang and
Hao Sun},
title = {lncFunTK: a toolkit for functional annotation of long noncoding RNAs},
journal = {Bioinform.},
volume = {34},
number = {19},
pages = {3415--3416},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty339},
doi = {10.1093/BIOINFORMATICS/BTY339},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhouHDYWS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhouTBB18,
author = {Ying Zhou and
Xiaowen Tian and
Brian L. Browning and
Sharon R. Browning},
title = {POPdemog: visualizing population demographic history from simulation
scripts},
journal = {Bioinform.},
volume = {34},
number = {16},
pages = {2854--2855},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty184},
doi = {10.1093/BIOINFORMATICS/BTY184},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhouTBB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhouWKIZ18,
author = {Xianxiao Zhou and
Minghui Wang and
Igor Katsyv and
Hanna Irie and
Bin Zhang},
title = {{EMUDRA:} Ensemble of Multiple Drug Repositioning Approaches to improve
prediction accuracy},
journal = {Bioinform.},
volume = {34},
number = {18},
pages = {3151--3159},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty325},
doi = {10.1093/BIOINFORMATICS/BTY325},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhouWKIZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhouWWZ18,
author = {Zilu Zhou and
Weixin Wang and
Li{-}San Wang and
Nancy Ruonan Zhang},
title = {Integrative {DNA} copy number detection and genotyping from sequencing
and array-based platforms},
journal = {Bioinform.},
volume = {34},
number = {14},
pages = {2349--2355},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty104},
doi = {10.1093/BIOINFORMATICS/BTY104},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhouWWZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhouWZT18,
author = {Yan Zhou and
Xiang Wan and
Baoxue Zhang and
Tiejun Tong},
title = {Classifying next-generation sequencing data using a zero-inflated
Poisson model},
journal = {Bioinform.},
volume = {34},
number = {8},
pages = {1329--1335},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx768},
doi = {10.1093/BIOINFORMATICS/BTX768},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhouWZT18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhouZSX18,
author = {Anbo Zhou and
Yeting Zhang and
Yazhou Sun and
Jinchuan Xing},
title = {PipelineDog: a simple and flexible graphic pipeline construction and
maintenance tool},
journal = {Bioinform.},
volume = {34},
number = {9},
pages = {1603--1605},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx759},
doi = {10.1093/BIOINFORMATICS/BTX759},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhouZSX18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhuAM18,
author = {Sha Joe Zhu and
Jacob Almagro{-}Garcia and
Gil McVean},
title = {Deconvolution of multiple infections in Plasmodium falciparum from
high throughput sequencing data},
journal = {Bioinform.},
volume = {34},
number = {1},
pages = {9--15},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx530},
doi = {10.1093/BIOINFORMATICS/BTX530},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhuAM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhuF18,
author = {Shijia Zhu and
Gang Fang},
title = {MatrixEpistasis: ultrafast, exhaustive epistasis scan for quantitative
traits with covariate adjustment},
journal = {Bioinform.},
volume = {34},
number = {14},
pages = {2341--2348},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty094},
doi = {10.1093/BIOINFORMATICS/BTY094},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhuF18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhuLCP18,
author = {Qile Zhu and
Xiaolin Li and
Ana Conesa and
C{\'{e}}cile Pereira},
title = {{GRAM-CNN:} a deep learning approach with local context for named
entity recognition in biomedical text},
journal = {Bioinform.},
volume = {34},
number = {9},
pages = {1547--1554},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx815},
doi = {10.1093/BIOINFORMATICS/BTX815},
timestamp = {Fri, 08 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhuLCP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhuN18,
author = {Jiafan Zhu and
Luay Nakhleh},
title = {Inference of species phylogenies from bi-allelic markers using pseudo-likelihood},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i376--i385},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty295},
doi = {10.1093/BIOINFORMATICS/BTY295},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhuN18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhuRL18,
author = {Houxiang Zhu and
Emily Richmond and
Chun Liang},
title = {{CRISPR-RT:} a web application for designing CRISPR-C2c2 crRNA with
improved target specificity},
journal = {Bioinform.},
volume = {34},
number = {1},
pages = {117--119},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx580},
doi = {10.1093/BIOINFORMATICS/BTX580},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhuRL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhuWBX18,
author = {Jianwei Zhu and
Sheng Wang and
Dongbo Bu and
Jinbo Xu},
title = {Protein threading using residue co-variation and deep learning},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i263--i273},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty278},
doi = {10.1093/BIOINFORMATICS/BTY278},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhuWBX18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZitnikAL18,
author = {Marinka Zitnik and
Monica Agrawal and
Jure Leskovec},
title = {Modeling polypharmacy side effects with graph convolutional networks},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i457--i466},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty294},
doi = {10.1093/BIOINFORMATICS/BTY294},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZitnikAL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZuallaertGKSSN18,
author = {Jasper Zuallaert and
Fr{\'{e}}deric Godin and
Mijung Kim and
Arne Soete and
Yvan Saeys and
Wesley De Neve},
title = {SpliceRover: interpretable convolutional neural networks for improved
splice site prediction},
journal = {Bioinform.},
volume = {34},
number = {24},
pages = {4180--4188},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty497},
doi = {10.1093/BIOINFORMATICS/BTY497},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZuallaertGKSSN18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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