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@article{DBLP:journals/bioinformatics/0002PWZMZ15,
author = {Ke Liu and
Shengwen Peng and
Junqiu Wu and
ChengXiang Zhai and
Hiroshi Mamitsuka and
Shanfeng Zhu},
title = {MeSHLabeler: improving the accuracy of large-scale MeSH indexing by
integrating diverse evidence},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {339--347},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv237},
doi = {10.1093/BIOINFORMATICS/BTV237},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/0002PWZMZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AbascalTV15,
author = {Federico Abascal and
Michael L. Tress and
Alfonso Valencia},
title = {Alternative splicing and co-option of transposable elements: the case
of TMPO/LAP2{\(\alpha\)} and {ZNF451} in mammals},
journal = {Bioinform.},
volume = {31},
number = {14},
pages = {2257--2261},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv132},
doi = {10.1093/BIOINFORMATICS/BTV132},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AbascalTV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AbuinPPA15,
author = {Jos{\'{e}} Manuel Abu{\'{\i}}n and
Juan Carlos Pichel and
Tom{\'{a}}s F. Pena and
Jorge Amigo},
title = {BigBWA: approaching the Burrows-Wheeler aligner to Big Data technologies},
journal = {Bioinform.},
volume = {31},
number = {24},
pages = {4003--4005},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv506},
doi = {10.1093/BIOINFORMATICS/BTV506},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AbuinPPA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AchawanantakunC15,
author = {Rujira Achawanantakun and
Jiao Chen and
Yanni Sun and
Yuan Zhang},
title = {LncRNA-ID: Long non-coding {RNA} IDentification using balanced random
forests},
journal = {Bioinform.},
volume = {31},
number = {24},
pages = {3897--3905},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv480},
doi = {10.1093/BIOINFORMATICS/BTV480},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AchawanantakunC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AdebaliOZ15,
author = {Ogun Adebali and
Davi R. Ortega and
Igor B. Zhulin},
title = {CDvist: a webserver for identification and visualization of conserved
domains in protein sequences},
journal = {Bioinform.},
volume = {31},
number = {9},
pages = {1475--1477},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu836},
doi = {10.1093/BIOINFORMATICS/BTU836},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AdebaliOZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AfsariFGM15,
author = {Bahman Afsari and
Elana J. Fertig and
Donald Geman and
Luigi Marchionni},
title = {switchBox: an {R} package for k-Top Scoring Pairs classifier development},
journal = {Bioinform.},
volume = {31},
number = {2},
pages = {273--274},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu622},
doi = {10.1093/BIOINFORMATICS/BTU622},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AfsariFGM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AgarwalGP15,
author = {Swapna Agarwal and
Pradip Ghanty and
Nikhil R. Pal},
title = {Identification of a small set of plasma signalling proteins using
neural network for prediction of Alzheimer's disease},
journal = {Bioinform.},
volume = {31},
number = {15},
pages = {2505--2513},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv173},
doi = {10.1093/BIOINFORMATICS/BTV173},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AgarwalGP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Aguilera-Mendoza15,
author = {Longendri Aguilera{-}Mendoza and
Yovani Marrero{-}Ponce and
Roberto Tellez{-}Ibarra and
Monica T. Llorente{-}Quesada and
Jes{\'{u}}s Salgado and
Stephen J. Barigye and
Jun Liu},
title = {Overlap and diversity in antimicrobial peptide databases: compiling
a non-redundant set of sequences},
journal = {Bioinform.},
volume = {31},
number = {15},
pages = {2553--2559},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv180},
doi = {10.1093/BIOINFORMATICS/BTV180},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Aguilera-Mendoza15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AhmedMZDMF15,
author = {Zeeshan Ahmed and
Michel Mayr and
Saman Zeeshan and
Thomas Dandekar and
Martin J. Mueller and
Agnes Fekete},
title = {\emph{Lipid-Pro: } a computational lipid identification solution for
untargeted lipidomics on data-independent acquisition tandem mass
spectrometry platforms},
journal = {Bioinform.},
volume = {31},
number = {7},
pages = {1150--1153},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu796},
doi = {10.1093/BIOINFORMATICS/BTU796},
timestamp = {Fri, 28 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AhmedMZDMF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AhnCP15,
author = {Tae{-}Hyuk Ahn and
Juanjuan Chai and
Chongle Pan},
title = {Sigma: Strain-level inference of genomes from metagenomic analysis
for biosurveillance},
journal = {Bioinform.},
volume = {31},
number = {2},
pages = {170--177},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu641},
doi = {10.1093/BIOINFORMATICS/BTU641},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AhnCP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AhnX15,
author = {Jaegyoon Ahn and
Xinshu Xiao},
title = {{RASER:} reads aligner for SNPs and editing sites of {RNA}},
journal = {Bioinform.},
volume = {31},
number = {24},
pages = {3906--3913},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv505},
doi = {10.1093/BIOINFORMATICS/BTV505},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AhnX15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AibarFDR15,
author = {Sara Aibar and
Celia Fontanillo and
Conrad Droste and
Javier De Las Rivas},
title = {Functional Gene Networks: R/Bioc package to generate and analyse gene
networks derived from functional enrichment and clustering},
journal = {Bioinform.},
volume = {31},
number = {10},
pages = {1686--1688},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu864},
doi = {10.1093/BIOINFORMATICS/BTU864},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AibarFDR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AimoLHNGGKDGRBX15,
author = {Lucila Aimo and
Robin Liechti and
Nevila Hyka{-}Nouspikel and
Anne Niknejad and
Anne Gleizes and
Lou G{\"{o}}tz and
Dmitry Kuznetsov and
Fabrice P. A. David and
F. Gisou van der Goot and
Howard Riezman and
Lydie Bougueleret and
Ioannis Xenarios and
Alan J. Bridge},
title = {The SwissLipids knowledgebase for lipid biology},
journal = {Bioinform.},
volume = {31},
number = {17},
pages = {2860--2866},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv285},
doi = {10.1093/BIOINFORMATICS/BTV285},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AimoLHNGGKDGRBX15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AitkenKA15,
author = {Stuart Aitken and
Alastair M. Kilpatrick and
Ozgur E. Akman},
title = {Dizzy-Beats: a Bayesian evidence analysis tool for systems biology},
journal = {Bioinform.},
volume = {31},
number = {11},
pages = {1863--1865},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv062},
doi = {10.1093/BIOINFORMATICS/BTV062},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AitkenKA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AkalinFVMS15,
author = {Altuna Akalin and
Vedran Franke and
Kristian Vlahovicek and
Christopher E. Mason and
Dirk Sch{\"{u}}beler},
title = {genomation: a toolkit to summarize, annotate and visualize genomic
intervals},
journal = {Bioinform.},
volume = {31},
number = {7},
pages = {1127--1129},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu775},
doi = {10.1093/BIOINFORMATICS/BTU775},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AkalinFVMS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Al-ShatnawiAS15,
author = {Mufleh Al{-}Shatnawi and
M. Omair Ahmad and
M. N. Shanmukha Swamy},
title = {Prediction of Indel flanking regions in protein sequences using a
variable-order Markov model},
journal = {Bioinform.},
volume = {31},
number = {1},
pages = {40--47},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu556},
doi = {10.1093/BIOINFORMATICS/BTU556},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Al-ShatnawiAS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlJaddaPBHTWMYR15,
author = {Khalifeh AlJadda and
Melody P. Porterfield and
Robert Bridger and
Christian Heiss and
Michael Tiemeyer and
Lance Wells and
John A. Miller and
William S. York and
Ren{\'{e}} Ranzinger},
title = {EUROCarbDB(CCRC): a EUROCarbDB node for storing glycomics standard
data},
journal = {Bioinform.},
volume = {31},
number = {2},
pages = {242--245},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu609},
doi = {10.1093/BIOINFORMATICS/BTU609},
timestamp = {Thu, 11 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AlJaddaPBHTWMYR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlhossaryHMK15,
author = {Amr Alhossary and
Stephanus Daniel Handoko and
Yuguang Mu and
Chee Keong Kwoh},
title = {Fast, accurate, and reliable molecular docking with QuickVina 2},
journal = {Bioinform.},
volume = {31},
number = {13},
pages = {2214--2216},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv082},
doi = {10.1093/BIOINFORMATICS/BTV082},
timestamp = {Fri, 28 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AlhossaryHMK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlkanE15,
author = {Ferhat Alkan and
Cesim Erten},
title = {SiPAN: simultaneous prediction and alignment of protein-protein interaction
networks},
journal = {Bioinform.},
volume = {31},
number = {14},
pages = {2356--2363},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv160},
doi = {10.1093/BIOINFORMATICS/BTV160},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AlkanE15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AllahyarR15,
author = {Amin Allahyar and
Jeroen de Ridder},
title = {{FERAL:} network-based classifier with application to breast cancer
outcome prediction},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {311--319},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv255},
doi = {10.1093/BIOINFORMATICS/BTV255},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AllahyarR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AllamKS15,
author = {Amin Allam and
Panos Kalnis and
Victor V. Solovyev},
title = {Karect: accurate correction of substitution, insertion and deletion
errors for next-generation sequencing data},
journal = {Bioinform.},
volume = {31},
number = {21},
pages = {3421--3428},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv415},
doi = {10.1093/BIOINFORMATICS/BTV415},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AllamKS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AllhoffSCLZC15,
author = {Manuel Allhoff and
Kristin Ser{\'{e}} and
Heike Chauvistr{\'{e}} and
Qiong Lin and
Martin Zenke and
Ivan G. Costa},
title = {Detecting differential peaks in ChIP-seq signals with {ODIN}},
journal = {Bioinform.},
volume = {31},
number = {6},
pages = {980},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv030},
doi = {10.1093/BIOINFORMATICS/BTV030},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AllhoffSCLZC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlonEE15,
author = {Shahar Alon and
Muhammad Erew and
Eli Eisenberg},
title = {{DREAM:} a webserver for the identification of editing sites in mature
miRNAs using deep sequencing data},
journal = {Bioinform.},
volume = {31},
number = {15},
pages = {2568--2570},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv187},
doi = {10.1093/BIOINFORMATICS/BTV187},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AlonEE15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlvarezCC15,
author = {Mariano J. Alvarez and
James C. Chen and
Andrea Califano},
title = {{DIGGIT:} a Bioconductor package to infer genetic variants driving
cellular phenotypes},
journal = {Bioinform.},
volume = {31},
number = {24},
pages = {4032--4034},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv499},
doi = {10.1093/BIOINFORMATICS/BTV499},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AlvarezCC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlvesY15,
author = {Gelio Alves and
Yi{-}Kuo Yu},
title = {Mass spectrometry-based protein identification with accurate statistical
significance assignment},
journal = {Bioinform.},
volume = {31},
number = {5},
pages = {699--706},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu717},
doi = {10.1093/BIOINFORMATICS/BTU717},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AlvesY15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AmarYMHS15,
author = {David Amar and
Daniel Yekutieli and
Adi Maron{-}Katz and
Talma Hendler and
Ron Shamir},
title = {A hierarchical Bayesian model for flexible module discovery in three-way
time-series data},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {17--26},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv228},
doi = {10.1093/BIOINFORMATICS/BTV228},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AmarYMHS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AmesL15,
author = {Ryan M. Ames and
Simon C. Lovell},
title = {DupliPHY-Web: a web server for DupliPHY and DupliPHY-ML},
journal = {Bioinform.},
volume = {31},
number = {3},
pages = {416--417},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu645},
doi = {10.1093/BIOINFORMATICS/BTU645},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AmesL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AmgalanL15,
author = {Bayarbaatar Amgalan and
Hyunju Lee},
title = {{DEOD:} uncovering dominant effects of cancer-driver genes based on
a partial covariance selection method},
journal = {Bioinform.},
volume = {31},
number = {15},
pages = {2452--2460},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv175},
doi = {10.1093/BIOINFORMATICS/BTV175},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AmgalanL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AmirCW15,
author = {Naama Amir and
Dan Cohen and
Haim J. Wolfson},
title = {DockStar: a novel ILP-based integrative method for structural modeling
of multimolecular protein complexes},
journal = {Bioinform.},
volume = {31},
number = {17},
pages = {2801--2807},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv270},
doi = {10.1093/BIOINFORMATICS/BTV270},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AmirCW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AnLSBWN15,
author = {Jiyuan An and
John Lai and
Atul Sajjanhar and
Jyotsna Batra and
Chenwei Wang and
Colleen C. Nelson},
title = {J-Circos: an interactive Circos plotter},
journal = {Bioinform.},
volume = {31},
number = {9},
pages = {1463--1465},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu842},
doi = {10.1093/BIOINFORMATICS/BTU842},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AnLSBWN15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AndersPH15,
author = {Simon Anders and
Paul Theodor Pyl and
Wolfgang Huber},
title = {HTSeq - a Python framework to work with high-throughput sequencing
data},
journal = {Bioinform.},
volume = {31},
number = {2},
pages = {166--169},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu638},
doi = {10.1093/BIOINFORMATICS/BTU638},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AndersPH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AndreaniS15,
author = {Jessica Andreani and
Johannes S{\"{o}}ding},
title = {bbcontacts: prediction of \emph{{\(\beta\)}}-strand pairing from direct
coupling patterns},
journal = {Bioinform.},
volume = {31},
number = {11},
pages = {1729--1737},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv041},
doi = {10.1093/BIOINFORMATICS/BTV041},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AndreaniS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AntanaviciuteDC15,
author = {Agne Antanaviciute and
Catherine Daly and
Laura A. Crinnion and
Alexander F. Markham and
Christopher M. Watson and
David T. Bonthron and
Ian M. Carr},
title = {GeneTIER: prioritization of candidate disease genes using tissue-specific
gene expression profiles},
journal = {Bioinform.},
volume = {31},
number = {16},
pages = {2728--2735},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv196},
doi = {10.1093/BIOINFORMATICS/BTV196},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AntanaviciuteDC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AntanaviciuteWH15,
author = {Agne Antanaviciute and
Christopher M. Watson and
Sally M. Harrison and
Carolina Lascelles and
Laura A. Crinnion and
Alexander F. Markham and
David T. Bonthron and
Ian M. Carr},
title = {{OVA:} integrating molecular and physical phenotype data from multiple
biomedical domain ontologies with variant filtering for enhanced variant
prioritization},
journal = {Bioinform.},
volume = {31},
number = {23},
pages = {3822--3829},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv473},
doi = {10.1093/BIOINFORMATICS/BTV473},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AntanaviciuteWH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ArakiCMOTMNHK15,
author = {Michihiro Araki and
Robert Sidney Cox III and
Hiroki Makiguchi and
Teppei Ogawa and
Takeshi Taniguchi and
Kohei Miyaoku and
Masahiko Nakatsui and
Kiyotaka Y. Hara and
Akihiko Kondo},
title = {M-path: a compass for navigating potential metabolic pathways},
journal = {Bioinform.},
volume = {31},
number = {6},
pages = {905--911},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu750},
doi = {10.1093/BIOINFORMATICS/BTU750},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ArakiCMOTMNHK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AramSPVK15,
author = {Parham Aram and
Lingli Shen and
John A. Pugh and
Seetharaman Vaidyanathan and
Visakan Kadirkamanathan},
title = {An efficient {TOF-SIMS} image analysis with spatial correlation and
alternating non-negativity-constrained least squares},
journal = {Bioinform.},
volume = {31},
number = {5},
pages = {753--760},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu734},
doi = {10.1093/BIOINFORMATICS/BTU734},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AramSPVK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Arandjelovic15,
author = {Ognjen Arandjelovic},
title = {Discovering hospital admission patterns using models learnt from electronic
hospital records},
journal = {Bioinform.},
volume = {31},
number = {24},
pages = {3970--3976},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv508},
doi = {10.1093/BIOINFORMATICS/BTV508},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Arandjelovic15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ArnoldRPSK15,
author = {Matthias Arnold and
Johannes Raffler and
Arne Pfeufer and
Karsten Suhre and
Gabi Kastenm{\"{u}}ller},
title = {\emph{SNiPA}: an interactive, genetic variant-centered annotation
browser},
journal = {Bioinform.},
volume = {31},
number = {8},
pages = {1334--1336},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu779},
doi = {10.1093/BIOINFORMATICS/BTU779},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ArnoldRPSK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AsarnowRSCS15,
author = {Daniel Asarnow and
Liliana Rojo{-}Arreola and
Brian M. Suzuki and
Conor R. Caffrey and
Rahul Singh},
title = {The {QDREC} web server: determining dose-response characteristics
of complex macroparasites in phenotypic drug screens},
journal = {Bioinform.},
volume = {31},
number = {9},
pages = {1515--1518},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu831},
doi = {10.1093/BIOINFORMATICS/BTU831},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AsarnowRSCS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AsshauerWDM15,
author = {Kathrin Petra A{\ss}hauer and
Bernd Wemheuer and
Rolf Daniel and
Peter Meinicke},
title = {Tax4Fun: predicting functional profiles from metagenomic 16S rRNA
data},
journal = {Bioinform.},
volume = {31},
number = {17},
pages = {2882--2884},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv287},
doi = {10.1093/BIOINFORMATICS/BTV287},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AsshauerWDM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AttoliniPR15,
author = {Camille Stephan{-}Otto Attolini and
V{\'{\i}}ctor Pe{\~{n}}a and
David Rossell},
title = {Designing alternative splicing RNA-seq studies. Beyond generic guidelines},
journal = {Bioinform.},
volume = {31},
number = {22},
pages = {3631--3637},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv436},
doi = {10.1093/BIOINFORMATICS/BTV436},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AttoliniPR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AyyalaL15,
author = {Deepak Nag Ayyala and
Shili Lin},
title = {GrammR: graphical representation and modeling of count data with application
in metagenomics},
journal = {Bioinform.},
volume = {31},
number = {10},
pages = {1648--1654},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv032},
doi = {10.1093/BIOINFORMATICS/BTV032},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AyyalaL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BadgeleySC15,
author = {Marcus A. Badgeley and
Stuart C. Sealfon and
Maria D. Chikina},
title = {Hybrid Bayesian-rank integration approach improves the predictive
power of genomic dataset aggregation},
journal = {Bioinform.},
volume = {31},
number = {2},
pages = {209--215},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu518},
doi = {10.1093/BIOINFORMATICS/BTU518},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BadgeleySC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaetsDKSR15,
author = {Greet De Baets and
Joost J. J. van Durme and
Rob van der Kant and
Joost Schymkowitz and
Frederic Rousseau},
title = {Solubis: optimize your protein},
journal = {Bioinform.},
volume = {31},
number = {15},
pages = {2580--2582},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv162},
doi = {10.1093/BIOINFORMATICS/BTV162},
timestamp = {Mon, 04 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BaetsDKSR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Baez-OrtegaLHGG15,
author = {Adrian Baez{-}Ortega and
Fabian Lorenzo{-}Diaz and
Mariano Hernandez and
Carlos Ignacio Gonzalez{-}Vila and
Jos{\'{e}} Luis Roda Garc{\'{\i}}a and
Marcos Colebrook and
Carlos Flores},
title = {IonGAP: integrative bacterial genome analysis for Ion Torrent sequence
data},
journal = {Bioinform.},
volume = {31},
number = {17},
pages = {2870--2873},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv283},
doi = {10.1093/BIOINFORMATICS/BTV283},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Baez-OrtegaLHGG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaileyVHL15,
author = {Swneke D. Bailey and
Carl Virtanen and
Benjamin Haibe{-}Kains and
Mathieu Lupien},
title = {{ABC:} a tool to identify SNVs causing allele-specific transcription
factor binding from ChIP-Seq experiments},
journal = {Bioinform.},
volume = {31},
number = {18},
pages = {3057--3059},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv321},
doi = {10.1093/BIOINFORMATICS/BTV321},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BaileyVHL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BalechVDMNP15,
author = {Bachir Balech and
Saverio Vicario and
Giacinto Donvito and
Alfonso Monaco and
Pasquale Notarangelo and
Graziano Pesole},
title = {{MSA-PAD:} {DNA} multiple sequence alignment framework based on {PFAM}
accessed domain information},
journal = {Bioinform.},
volume = {31},
number = {15},
pages = {2571--2573},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv141},
doi = {10.1093/BIOINFORMATICS/BTV141},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BalechVDMNP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BallouzVG15,
author = {Sara Ballouz and
Wim Verleyen and
Jesse A. Gillis},
title = {Guidance for RNA-seq co-expression network construction and analysis:
safety in numbers},
journal = {Bioinform.},
volume = {31},
number = {13},
pages = {2123--2130},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv118},
doi = {10.1093/BIOINFORMATICS/BTV118},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BallouzVG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BanAJ15,
author = {Yuguang Ban and
Lingling An and
Hongmei Jiang},
title = {Investigating microbial co-occurrence patterns based on metagenomic
compositional data},
journal = {Bioinform.},
volume = {31},
number = {20},
pages = {3322--3329},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv364},
doi = {10.1093/BIOINFORMATICS/BTV364},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BanAJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BansalWAK15,
author = {Mukul S. Bansal and
Yi{-}Chieh Wu and
Eric J. Alm and
Manolis Kellis},
title = {Improved gene tree error correction in the presence of horizontal
gene transfer},
journal = {Bioinform.},
volume = {31},
number = {8},
pages = {1211--1218},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu806},
doi = {10.1093/BIOINFORMATICS/BTU806},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BansalWAK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BastienBMM15,
author = {Philippe Bastien and
Fr{\'{e}}d{\'{e}}ric Bertrand and
Nicolas Meyer and
Myriam Maumy{-}Bertrand},
title = {Deviance residuals-based sparse {PLS} and sparse kernel {PLS} regression
for censored data},
journal = {Bioinform.},
volume = {31},
number = {3},
pages = {397--404},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu660},
doi = {10.1093/BIOINFORMATICS/BTU660},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BastienBMM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BeauclairBZSZ15,
author = {Guillaume Beauclair and
Antoine Bridier{-}Nahmias and
Jean{-}Fran{\c{c}}ois Zagury and
Ali Sa{\"{\i}}b and
Alessia Zamborlini},
title = {{JASSA:} a comprehensive tool for prediction of SUMOylation sites
and SIMs},
journal = {Bioinform.},
volume = {31},
number = {21},
pages = {3483--3491},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv403},
doi = {10.1093/BIOINFORMATICS/BTV403},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BeauclairBZSZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BeckDF15,
author = {Daniel Beck and
Christopher Dennis and
James A. Foster},
title = {Seed: a user-friendly tool for exploring and visualizing microbial
community data},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {602--603},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu693},
doi = {10.1093/BIOINFORMATICS/BTU693},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BeckDF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BeertenDGCSRS15,
author = {Jacinte Beerten and
Joost J. J. van Durme and
Rodrigo Gallardo and
Emidio Capriotti and
Louise C. Serpell and
Frederic Rousseau and
Joost Schymkowitz},
title = {{WALTZ-DB:} a benchmark database of amyloidogenic hexapeptides},
journal = {Bioinform.},
volume = {31},
number = {10},
pages = {1698--1700},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv027},
doi = {10.1093/BIOINFORMATICS/BTV027},
timestamp = {Mon, 04 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BeertenDGCSRS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BeinsteinerMK15,
author = {Brice Beinsteiner and
Jonathan Michalon and
Bruno P. Klaholz},
title = {IBiSS, a versatile and interactive tool for integrated sequence and
3D structure analysis of large macromolecular complexes},
journal = {Bioinform.},
volume = {31},
number = {20},
pages = {3339--3344},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv347},
doi = {10.1093/BIOINFORMATICS/BTV347},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BeinsteinerMK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BemisHEFVMSV15,
author = {Kyle D. Bemis and
April Harry and
Livia S. Eberlin and
Christina Ferreira and
Stephanie M. van de Ven and
Parag Mallick and
Mark L. Stolowitz and
Olga Vitek},
title = {\emph{Cardinal}: an {R} package for statistical analysis of mass spectrometry-based
imaging experiments},
journal = {Bioinform.},
volume = {31},
number = {14},
pages = {2418--2420},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv146},
doi = {10.1093/BIOINFORMATICS/BTV146},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BemisHEFVMSV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BenidtN15,
author = {Sam Benidt and
Dan Nettleton},
title = {SimSeq: a nonparametric approach to simulation of RNA-sequence datasets},
journal = {Bioinform.},
volume = {31},
number = {13},
pages = {2131--2140},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv124},
doi = {10.1093/BIOINFORMATICS/BTV124},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BenidtN15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BeranM15,
author = {Pavel Beran and
Ivan Mraz},
title = {{ABIF} Manager: simple reading and editing of {ABIF} formatted files},
journal = {Bioinform.},
volume = {31},
number = {24},
pages = {4012--4013},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv512},
doi = {10.1093/BIOINFORMATICS/BTV512},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BeranM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BhattacharyaC15,
author = {Anindya Bhattacharya and
Yan Cui},
title = {miR2GO: comparative functional analysis for microRNAs},
journal = {Bioinform.},
volume = {31},
number = {14},
pages = {2403--2405},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv140},
doi = {10.1093/BIOINFORMATICS/BTV140},
timestamp = {Mon, 25 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BhattacharyaC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BickhartHXSTRST15,
author = {Derek M. Bickhart and
Jana L. Hutchison and
Lingyang Xu and
Robert D. Schnabel and
Jeremy F. Taylor and
James M. Reecy and
Steven G. Schroeder and
Curtis P. Van Tassell and
Tad S. Sonstegard and
George E. Liu},
title = {{RAPTR-SV:} a hybrid method for the detection of structural variants},
journal = {Bioinform.},
volume = {31},
number = {13},
pages = {2084--2090},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv086},
doi = {10.1093/BIOINFORMATICS/BTV086},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BickhartHXSTRST15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BiehlSBBDMNRZH15,
author = {Michael Biehl and
Peter J. Sadowski and
Gyan Bhanot and
Erhan Bilal and
Adel Dayarian and
Pablo Meyer and
Raquel Norel and
Kahn Rhrissorrakrai and
Michael D. Zeller and
Sahand Hormoz},
title = {Inter-species prediction of protein phosphorylation in the sbv {IMPROVER}
species translation challenge},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {453--461},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu407},
doi = {10.1093/BIOINFORMATICS/BTU407},
timestamp = {Fri, 01 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BiehlSBBDMNRZH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BilalSPMMBRMNIBRPHSAP15,
author = {Erhan Bilal and
Theodore Sakellaropoulos and
Challenge Participants and
Ioannis N. Melas and
Dimitris E. Messinis and
Vincenzo Belcastro and
Kahn Rhrissorrakrai and
Pablo Meyer and
Raquel Norel and
Anita Iskandar and
Elise Blaese and
John Jeremy Rice and
Manuel C. Peitsch and
Julia Hoeng and
Gustavo Stolovitzky and
Leonidas G. Alexopoulos and
Carine Poussin},
title = {A crowd-sourcing approach for the construction of species-specific
cell signaling networks},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {484--491},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu659},
doi = {10.1093/BIOINFORMATICS/BTU659},
timestamp = {Fri, 01 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BilalSPMMBRMNIBRPHSAP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BiswasGRZ15,
author = {Abhishek Biswas and
David Gauthier and
Desh Ranjan and
Mohammad Zubair},
title = {ISQuest: finding insertion sequences in prokaryotic sequence fragment
data},
journal = {Bioinform.},
volume = {31},
number = {21},
pages = {3406--3412},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv388},
doi = {10.1093/BIOINFORMATICS/BTV388},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BiswasGRZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BlassleM15,
author = {Alexander Bl{\"{a}}{\ss}le and
Patrick M{\"{u}}ller},
title = {PyFDAP: automated analysis of fluorescence decay after photoconversion
{(FDAP)} experiments},
journal = {Bioinform.},
volume = {31},
number = {6},
pages = {972--974},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu735},
doi = {10.1093/BIOINFORMATICS/BTU735},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BlassleM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BleazardLG15,
author = {Thomas Bleazard and
Janine A. Lamb and
Sam Griffiths{-}Jones},
title = {Bias in microRNA functional enrichment analysis},
journal = {Bioinform.},
volume = {31},
number = {10},
pages = {1592--1598},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv023},
doi = {10.1093/BIOINFORMATICS/BTV023},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BleazardLG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BlivenBP15,
author = {Spencer E. Bliven and
Philip E. Bourne and
Andreas Prlic},
title = {Detection of circular permutations within protein structures using
{CE-CP}},
journal = {Bioinform.},
volume = {31},
number = {8},
pages = {1316--1318},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu823},
doi = {10.1093/BIOINFORMATICS/BTU823},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BlivenBP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BodenhoferBHH15,
author = {Ulrich Bodenhofer and
Enrico Bonatesta and
Christoph Horejs{-}Kainrath and
Sepp Hochreiter},
title = {msa: an {R} package for multiple sequence alignment},
journal = {Bioinform.},
volume = {31},
number = {24},
pages = {3997--3999},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv494},
doi = {10.1093/BIOINFORMATICS/BTV494},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BodenhoferBHH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BorozanWF15,
author = {Ivan Borozan and
Stuart N. Watt and
Vincent Ferretti},
title = {Integrating alignment-based and alignment-free sequence similarity
measures for biological sequence classification},
journal = {Bioinform.},
volume = {31},
number = {9},
pages = {1396--1404},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv006},
doi = {10.1093/BIOINFORMATICS/BTV006},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BorozanWF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BosiDGBSLCFF15,
author = {Emanuele Bosi and
Beatrice Donati and
Marco Galardini and
Sara Brunetti and
Marie{-}France Sagot and
Pietro Li{\`{o}} and
Pierluigi Crescenzi and
Renato Fani and
Marco Fondi},
title = {MeDuSa: a multi-draft based scaffolder},
journal = {Bioinform.},
volume = {31},
number = {15},
pages = {2443--2451},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv171},
doi = {10.1093/BIOINFORMATICS/BTV171},
timestamp = {Sun, 12 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BosiDGBSLCFF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BouvierDFBN15,
author = {Guillaume Bouvier and
Nathan Desdouits and
Mathias Ferber and
Arnaud Blondel and
Michael Nilges},
title = {An automatic tool to analyze and cluster macromolecular conformations
based on self-organizing maps},
journal = {Bioinform.},
volume = {31},
number = {9},
pages = {1490--1492},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu849},
doi = {10.1093/BIOINFORMATICS/BTU849},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BouvierDFBN15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BradburyGADGK0V15,
author = {James Bradbury and
Gr{\'{e}}gory Genta{-}Jouve and
James William Allwood and
Warwick B. Dunn and
Royston Goodacre and
Joshua D. Knowles and
Shan He and
Mark R. Viant},
title = {{MUSCLE:} automated multi-objective evolutionary optimization of targeted
{LC-MS/MS} analysis},
journal = {Bioinform.},
volume = {31},
number = {6},
pages = {975--977},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu740},
doi = {10.1093/BIOINFORMATICS/BTU740},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BradburyGADGK0V15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrindaSK15,
author = {Karel Brinda and
Maciej Sykulski and
Gregory Kucherov},
title = {Spaced seeds improve \emph{k}-mer-based metagenomic classification},
journal = {Bioinform.},
volume = {31},
number = {22},
pages = {3584--3592},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv419},
doi = {10.1093/BIOINFORMATICS/BTV419},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BrindaSK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrombergC15,
author = {Yana Bromberg and
Emidio Capriotti},
title = {Editor's Choice: {SNP-SIG} 2013: the state of the art of genomic variant
interpretation},
journal = {Bioinform.},
volume = {31},
number = {3},
pages = {449--450},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu415},
doi = {10.1093/BIOINFORMATICS/BTU415},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BrombergC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrownP15,
author = {Adam S. Brown and
Chirag J. Patel},
title = {aRrayLasso: a network-based approach to microarray interconversion},
journal = {Bioinform.},
volume = {31},
number = {23},
pages = {3859--3861},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv469},
doi = {10.1093/BIOINFORMATICS/BTV469},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BrownP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrynildsrudSB15,
author = {Ola Brynildsrud and
Lars{-}Gustav Snipen and
Jon Bohlin},
title = {CNOGpro: detection and quantification of CNVs in prokaryotic whole-genome
sequencing data},
journal = {Bioinform.},
volume = {31},
number = {11},
pages = {1708--1715},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv070},
doi = {10.1093/BIOINFORMATICS/BTV070},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BrynildsrudSB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BudcziesBTKD15,
author = {Jan Budczies and
Michael Bockmayr and
Denise Treue and
Frederick Klauschen and
Carsten Denkert},
title = {Semiconductor sequencing: how many flows do you need?},
journal = {Bioinform.},
volume = {31},
number = {8},
pages = {1199--1203},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu805},
doi = {10.1093/BIOINFORMATICS/BTU805},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BudcziesBTKD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BunkuteCCBNF15,
author = {Egle Bunkute and
Christopher Cummins and
Fraser J. Crofts and
Gareth Bunce and
Ian T. Nabney and
Darren R. Flower},
title = {{PIP-DB:} the Protein Isoelectric Point database},
journal = {Bioinform.},
volume = {31},
number = {2},
pages = {295--296},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu637},
doi = {10.1093/BIOINFORMATICS/BTU637},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BunkuteCCBNF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BurtonMBWDWTLCG15,
author = {Paul R. Burton and
Madeleine J. Murtagh and
Andy Boyd and
James B. Williams and
Edward S. Dove and
Susan E. Wallace and
Anne{-}Marie Tass{\'{e}} and
Julian Little and
Rex L. Chisholm and
Amadou Gaye and
Kristian Hveem and
Anthony J. Brookes and
Pat Goodwin and
Jon Fistein and
Martin Bobrow and
Bartha M. Knoppers},
title = {Data Safe Havens in health research and healthcare},
journal = {Bioinform.},
volume = {31},
number = {20},
pages = {3241--3248},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv279},
doi = {10.1093/BIOINFORMATICS/BTV279},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BurtonMBWDWTLCG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BuskeMMRB15,
author = {Orion J. Buske and
AshokKumar Manickaraj and
Seema Mital and
Peter N. Ray and
Michael Brudno},
title = {Identification of deleterious synonymous variants in human genomes},
journal = {Bioinform.},
volume = {31},
number = {5},
pages = {799},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu765},
doi = {10.1093/BIOINFORMATICS/BTU765},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BuskeMMRB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BystryABSBHSD15,
author = {Vojtech Bystr{\'{y}} and
Andreas Agathangelidis and
Vasilis Bikos and
Lesley Ann Sutton and
Panagiotis Baliakas and
Anastasia Hadzidimitriou and
Kostas Stamatopoulos and
Nikos Darzentas},
title = {ARResT/AssignSubsets: a novel application for robust subclassification
of chronic lymphocytic leukemia based on {B} cell receptor {IG} stereotypy},
journal = {Bioinform.},
volume = {31},
number = {23},
pages = {3844--3846},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv456},
doi = {10.1093/BIOINFORMATICS/BTV456},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BystryABSBHSD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CaiHWXYZZ15,
author = {Ruichu Cai and
Zhifeng Hao and
Marianne Winslett and
Xiaokui Xiao and
Yin Yang and
Zhenjie Zhang and
Shuigeng Zhou},
title = {Deterministic identification of specific individuals from {GWAS} results},
journal = {Bioinform.},
volume = {31},
number = {11},
pages = {1701--1707},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv018},
doi = {10.1093/BIOINFORMATICS/BTV018},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CaiHWXYZZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CaoBALC15,
author = {Renzhi Cao and
Debswapna Bhattacharya and
Badri Adhikari and
Jilong Li and
Jianlin Cheng},
title = {Large-scale model quality assessment for improving protein tertiary
structure prediction},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {116--123},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv235},
doi = {10.1093/BIOINFORMATICS/BTV235},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CaoBALC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CaoS15,
author = {Chang{-}Chang Cao and
Xiao Sun},
title = {Accurate estimation of haplotype frequency from pooled sequencing
data and cost-effective identification of rare haplotype carriers
by overlapping pool sequencing},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {515--522},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu670},
doi = {10.1093/BIOINFORMATICS/BTU670},
timestamp = {Wed, 08 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CaoS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CaoXXC15,
author = {Dong{-}Sheng Cao and
Nan Xiao and
Qing{-}Song Xu and
Alex F. Chen},
title = {Rcpi: R/Bioconductor package to generate various descriptors of proteins,
compounds and their interactions},
journal = {Bioinform.},
volume = {31},
number = {2},
pages = {279--281},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu624},
doi = {10.1093/BIOINFORMATICS/BTU624},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CaoXXC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CapeceVVRCSSFB15,
author = {Vincenzo Capece and
Julio C. Garcia Vizcaino and
Ramon Vidal and
Raza{-}Ur Rahman and
Tonatiuh Pena Centeno and
Orr Shomroni and
Irantzu Suberviola and
Andr{\'{e}} Fischer and
Stefan Bonn},
title = {Oasis: online analysis of small {RNA} deep sequencing data},
journal = {Bioinform.},
volume = {31},
number = {13},
pages = {2205--2207},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv113},
doi = {10.1093/BIOINFORMATICS/BTV113},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CapeceVVRCSSFB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CapomaccioMBVA15,
author = {Stefano Capomaccio and
Marco Milanesi and
L. Bomba and
E. Vajana and
Paolo Ajmone{-}Marsan},
title = {{MUGBAS:} a species free gene-based programme suite for post-GWAS
analysis},
journal = {Bioinform.},
volume = {31},
number = {14},
pages = {2380--2381},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv144},
doi = {10.1093/BIOINFORMATICS/BTV144},
timestamp = {Mon, 30 Mar 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CapomaccioMBVA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CastelliniPM15,
author = {Alberto Castellini and
Daniele Paltrinieri and
Vincenzo Manca},
title = {MP-GeneticSynth: inferring biological network regulations from time
series},
journal = {Bioinform.},
volume = {31},
number = {5},
pages = {785--787},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu694},
doi = {10.1093/BIOINFORMATICS/BTU694},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CastelliniPM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CeolM15,
author = {Arnaud C{\'{e}}ol and
Heiko M{\"{u}}ller},
title = {The {MI} bundle: enabling network and structural biology in genome
visualization tools},
journal = {Bioinform.},
volume = {31},
number = {22},
pages = {3679--3681},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv431},
doi = {10.1093/BIOINFORMATICS/BTV431},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CeolM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChaeRNK15,
author = {Heejoon Chae and
SungMin Rhee and
Kenneth P. Nephew and
Sun Kim},
title = {BioVLAB-MMIA-NGS: microRNA-mRNA integrated analysis using high-throughput
sequencing data},
journal = {Bioinform.},
volume = {31},
number = {2},
pages = {265--267},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu614},
doi = {10.1093/BIOINFORMATICS/BTU614},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChaeRNK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChambazN15,
author = {Antoine Chambaz and
Pierre Neuvial},
title = {tmle.npvi: targeted, integrative search of associations between {DNA}
copy number and gene expression, accounting for {DNA} methylation},
journal = {Bioinform.},
volume = {31},
number = {18},
pages = {3054--3056},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv320},
doi = {10.1093/BIOINFORMATICS/BTV320},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChambazN15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChanZYBHOZ15,
author = {Wallace K. B. Chan and
Hongjiu Zhang and
Jianyi Yang and
Jeffrey R. Brender and
Junguk Hur and
Arzucan {\"{O}}zg{\"{u}}r and
Yang Zhang},
title = {{GLASS:} a comprehensive database for experimentally validated GPCR-ligand
associations},
journal = {Bioinform.},
volume = {31},
number = {18},
pages = {3035--3042},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv302},
doi = {10.1093/BIOINFORMATICS/BTV302},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChanZYBHOZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChaplaisG15,
author = {Emmanuel Chaplais and
Henri{-}Jean Garchon},
title = {stringgaussnet: from differentially expressed genes to semantic and
Gaussian networks generation},
journal = {Bioinform.},
volume = {31},
number = {23},
pages = {3865--3867},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv450},
doi = {10.1093/BIOINFORMATICS/BTV450},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChaplaisG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Charlop-PowersB15,
author = {Zachary Charlop{-}Powers and
Sean F. Brady},
title = {phylogeo: an {R} package for geographic analysis and visualization
of microbiome data},
journal = {Bioinform.},
volume = {31},
number = {17},
pages = {2909--2911},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv269},
doi = {10.1093/BIOINFORMATICS/BTV269},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Charlop-PowersB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChattopadhyayNF15,
author = {Amit K. Chattopadhyay and
Diar Nasiev and
Darren R. Flower},
title = {A statistical physics perspective on alignment-independent protein
sequence comparison},
journal = {Bioinform.},
volume = {31},
number = {15},
pages = {2469--2474},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv167},
doi = {10.1093/BIOINFORMATICS/BTV167},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChattopadhyayNF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChaudharyFB15,
author = {Ruchi Chaudhary and
David Fern{\'{a}}ndez{-}Baca and
John Gordon Burleigh},
title = {MulRF: a software package for phylogenetic analysis using multi-copy
gene trees},
journal = {Bioinform.},
volume = {31},
number = {3},
pages = {432--433},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu648},
doi = {10.1093/BIOINFORMATICS/BTU648},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChaudharyFB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChaudharyNG15,
author = {Priyashree Chaudhary and
Athi N. Naganathan and
M. Michael Gromiha},
title = {Folding RaCe: a robust method for predicting changes in protein folding
rates upon point mutations},
journal = {Bioinform.},
volume = {31},
number = {13},
pages = {2091--2097},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv091},
doi = {10.1093/BIOINFORMATICS/BTV091},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChaudharyNG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenCCL15,
author = {Lujia Chen and
Chunhui Cai and
Vicky Chen and
Xinghua Lu},
title = {Trans-species learning of cellular signaling systems with bimodal
deep belief networks},
journal = {Bioinform.},
volume = {31},
number = {18},
pages = {3008--3015},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv315},
doi = {10.1093/BIOINFORMATICS/BTV315},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenCCL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenCTOTC15,
author = {Gengbo Chen and
Liang Cui and
Guo Shou Teo and
Choon Nam Ong and
Chuen Seng Tan and
Hyungwon Choi},
title = {MetTailor: dynamic block summary and intensity normalization for robust
analysis of mass spectrometry data in metabolomics},
journal = {Bioinform.},
volume = {31},
number = {22},
pages = {3645--3652},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv434},
doi = {10.1093/BIOINFORMATICS/BTV434},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenCTOTC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenGMRNZ15,
author = {Haifen Chen and
Jing Guo and
Shital K. Mishra and
Paul Robson and
Mahesan Niranjan and
Jie Zheng},
title = {Single-cell transcriptional analysis to uncover regulatory circuits
driving cell fate decisions in early mouse development},
journal = {Bioinform.},
volume = {31},
number = {7},
pages = {1060--1066},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu777},
doi = {10.1093/BIOINFORMATICS/BTU777},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenGMRNZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenHF15,
author = {Jonathan E. Chen and
Conrad C. Huang and
Thomas E. Ferrin},
title = {RRDistMaps: a {UCSF} Chimera tool for viewing and comparing protein
distance maps},
journal = {Bioinform.},
volume = {31},
number = {9},
pages = {1484--1486},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu841},
doi = {10.1093/BIOINFORMATICS/BTU841},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenHF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenLKLC15,
author = {Li Chen and
Han Liu and
Jean{-}Pierre A. Kocher and
Hongzhe Li and
Jun Chen},
title = {glmgraph: an {R} package for variable selection and predictive modeling
of structured genomic data},
journal = {Bioinform.},
volume = {31},
number = {24},
pages = {3991--3993},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv497},
doi = {10.1093/BIOINFORMATICS/BTV497},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenLKLC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenLZX15,
author = {Yang Chen and
Li Li and
Guo{-}Qiang Zhang and
Rong Xu},
title = {Phenome-driven disease genetics prediction toward drug discovery},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {276--283},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv245},
doi = {10.1093/BIOINFORMATICS/BTV245},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenLZX15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenSSXQ15,
author = {Xiang Chen and
Shao{-}Ping Shi and
Sheng{-}Bao Suo and
Hao{-}Dong Xu and
Jian{-}Ding Qiu},
title = {Proteomic analysis and prediction of human phosphorylation sites in
subcellular level reveal subcellular specificity},
journal = {Bioinform.},
volume = {31},
number = {2},
pages = {194--200},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu598},
doi = {10.1093/BIOINFORMATICS/BTU598},
timestamp = {Tue, 22 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenSSXQ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenWQW15,
author = {Li Chen and
Chi Wang and
Zhaohui S. Qin and
Hao Wu},
title = {A novel statistical method for quantitative comparison of multiple
ChIP-seq datasets},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {1889--1896},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv094},
doi = {10.1093/BIOINFORMATICS/BTV094},
timestamp = {Thu, 15 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenWQW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenWZZSCCLCL15,
author = {Rui Chen and
Qiang Wei and
Xiaowei Zhan and
Xue Zhong and
James S. Sutcliffe and
Nancy J. Cox and
Edwin H. Cook Jr. and
Chun Li and
Wei Chen and
Bingshan Li},
title = {A haplotype-based framework for group-wise transmission/disequilibrium
tests for rare variant association analysis},
journal = {Bioinform.},
volume = {31},
number = {9},
pages = {1452--1459},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu860},
doi = {10.1093/BIOINFORMATICS/BTU860},
timestamp = {Thu, 09 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenWZZSCCLCL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenYTHH15,
author = {Yi{-}Hsiung Chen and
Chi{-}Dung Yang and
Ching{-}Ping Tseng and
Hsien{-}Da Huang and
Shinn{-}Ying Ho},
title = {GeNOSA: inferring and experimentally supporting quantitative gene
regulatory networks in prokaryotes},
journal = {Bioinform.},
volume = {31},
number = {13},
pages = {2151--2158},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv075},
doi = {10.1093/BIOINFORMATICS/BTV075},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenYTHH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenZBLZC15,
author = {Wei Chen and
Xitong Zhang and
Jordan Brooker and
Hao Lin and
Liqing Zhang and
Kuo{-}Chen Chou},
title = {PseKNC-General: a cross-platform package for generating various modes
of pseudo nucleotide compositions},
journal = {Bioinform.},
volume = {31},
number = {1},
pages = {119--120},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu602},
doi = {10.1093/BIOINFORMATICS/BTU602},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenZBLZC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CheongTYN15,
author = {Wei{-}Hien Cheong and
Yung{-}Chie Tan and
Soon{-}Joo Yap and
Kee{-}Peng Ng},
title = {ClicO {FS:} an interactive web-based service of Circos},
journal = {Bioinform.},
volume = {31},
number = {22},
pages = {3685--3687},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv433},
doi = {10.1093/BIOINFORMATICS/BTV433},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CheongTYN15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChermakPSVSCO15,
author = {Edrisse Chermak and
Andrea Petta and
Luigi Serra and
Anna Vangone and
Vittorio Scarano and
Luigi Cavallo and
Romina Oliva},
title = {{CONSRANK:} a server for the analysis, comparison and ranking of docking
models based on inter-residue contacts},
journal = {Bioinform.},
volume = {31},
number = {9},
pages = {1481--1483},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu837},
doi = {10.1093/BIOINFORMATICS/BTU837},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChermakPSVSCO15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChibaSNYIOM15,
author = {Kenichi Chiba and
Yuichi Shiraishi and
Yasunobu Nagata and
Kenichi Yoshida and
Seiya Imoto and
Seishi Ogawa and
Satoru Miyano},
title = {Genomon ITDetector: a tool for somatic internal tandem duplication
detection from cancer genome sequencing data},
journal = {Bioinform.},
volume = {31},
number = {1},
pages = {116--118},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu593},
doi = {10.1093/BIOINFORMATICS/BTU593},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChibaSNYIOM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChikinaZS15,
author = {Maria D. Chikina and
Elena Zaslavsky and
Stuart C. Sealfon},
title = {CellCODE: a robust latent variable approach to differential expression
analysis for heterogeneous cell populations},
journal = {Bioinform.},
volume = {31},
number = {10},
pages = {1584--1591},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv015},
doi = {10.1093/BIOINFORMATICS/BTV015},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChikinaZS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChildsGS15,
author = {Dorothee Childs and
Sergio Grimbs and
Joachim Selbig},
title = {Refined elasticity sampling for Monte Carlo-based identification of
stabilizing network patterns},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {214--220},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv243},
doi = {10.1093/BIOINFORMATICS/BTV243},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChildsGS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChiuC15,
author = {Jimmy Ka Ho Chiu and
Yi{-}Ping Phoebe Chen},
title = {Pairwise {RNA} secondary structure alignment with conserved stem pattern},
journal = {Bioinform.},
volume = {31},
number = {24},
pages = {3914--3921},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv471},
doi = {10.1093/BIOINFORMATICS/BTV471},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChiuC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChoiC15,
author = {Yongwook Choi and
Agnes P. Chan},
title = {{PROVEAN} web server: a tool to predict the functional effect of amino
acid substitutions and indels},
journal = {Bioinform.},
volume = {31},
number = {16},
pages = {2745--2747},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv195},
doi = {10.1093/BIOINFORMATICS/BTV195},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChoiC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChowdhuryGWHRSS15,
author = {Salim Akhter Chowdhury and
E. Michael Gertz and
Darawalee Wangsa and
Kerstin Heselmeyer{-}Haddad and
Thomas Ried and
Alejandro A. Sch{\"{a}}ffer and
Russell Schwartz},
title = {Inferring models of multiscale copy number evolution for single-tumor
phylogenetics},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {258--267},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv233},
doi = {10.1093/BIOINFORMATICS/BTV233},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChowdhuryGWHRSS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChuMHCS15,
author = {Tianjiao Chu and
Jean{-}Francois Mouillet and
Brian L. Hood and
Thomas P. Conrads and
Yoel Sadovsky},
title = {The assembly of miRNA-mRNA-protein regulatory networks using high-throughput
expression data},
journal = {Bioinform.},
volume = {31},
number = {11},
pages = {1780--1787},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv038},
doi = {10.1093/BIOINFORMATICS/BTV038},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChuMHCS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChuaBTDJ15,
author = {Huey{-}Eng Chua and
Sourav S. Bhowmick and
Lisa Tucker{-}Kellogg and
C. Forbes Dewey Jr.},
title = {{TENET:} topological feature-based target characterization in signalling
networks},
journal = {Bioinform.},
volume = {31},
number = {20},
pages = {3306--3314},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv360},
doi = {10.1093/BIOINFORMATICS/BTV360},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChuaBTDJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChungS15,
author = {Neo Christopher Chung and
John D. Storey},
title = {Statistical significance of variables driving systematic variation
in high-dimensional data},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {545--554},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu674},
doi = {10.1093/BIOINFORMATICS/BTU674},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChungS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CicekRO15,
author = {A. Erc{\"{u}}ment {\c{C}}i{\c{c}}ek and
Kathryn Roeder and
Gultekin {\"{O}}zsoyoglu},
title = {{MIRA:} mutual information-based reporter algorithm for metabolic
networks},
journal = {Bioinform.},
volume = {31},
number = {7},
pages = {1160},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv081},
doi = {10.1093/BIOINFORMATICS/BTV081},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CicekRO15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CingolaniSB15,
author = {Pablo Cingolani and
Rob Sladek and
Mathieu Blanchette},
title = {BigDataScript: a scripting language for data pipelines},
journal = {Bioinform.},
volume = {31},
number = {1},
pages = {10--16},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu595},
doi = {10.1093/BIOINFORMATICS/BTU595},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CingolaniSB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ClarkK15,
author = {Connor Clark and
Jugal Kalita},
title = {A multiobjective memetic algorithm for {PPI} network alignment},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {1988--1998},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv063},
doi = {10.1093/BIOINFORMATICS/BTV063},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ClarkK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CobanogluOTB15,
author = {Murat Can Cobanoglu and
Zolt{\'{a}}n N. Oltvai and
D. Lansing Taylor and
Ivet Bahar},
title = {BalestraWeb: efficient online evaluation of drug-target interactions},
journal = {Bioinform.},
volume = {31},
number = {1},
pages = {131--133},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu599},
doi = {10.1093/BIOINFORMATICS/BTU599},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CobanogluOTB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CoelhoPFNKRC15,
author = {Lu{\'{\i}}s Pedro Coelho and
Catarina Pato and
Ana Fri{\~{a}}es and
Ariane Neumann and
Maren von K{\"{o}}ckritz{-}Blickwede and
M{\'{a}}rio Ramirez and
Jo{\~{a}}o Andr{\'{e}} Carri{\c{c}}o},
title = {Automatic determination of {NET} (neutrophil extracellular traps)
coverage in fluorescent microscopy images},
journal = {Bioinform.},
volume = {31},
number = {14},
pages = {2364--2370},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv156},
doi = {10.1093/BIOINFORMATICS/BTV156},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CoelhoPFNKRC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CoetzeeCH15,
author = {Simon G. Coetzee and
Gerhard A. Coetzee and
Dennis J. Hazelett},
title = {\emph{motifbreakR}: an R/Bioconductor package for predicting variant
effects at transcription factor binding sites},
journal = {Bioinform.},
volume = {31},
number = {23},
pages = {3847--3849},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv470},
doi = {10.1093/BIOINFORMATICS/BTV470},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CoetzeeCH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CoilJD15,
author = {David Coil and
Guillaume Jospin and
Aaron E. Darling},
title = {A5-miseq: an updated pipeline to assemble microbial genomes from Illumina
MiSeq data},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {587--589},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu661},
doi = {10.1093/BIOINFORMATICS/BTU661},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CoilJD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ColomboV15,
author = {Nicol{\`{o}} Colombo and
Nikos Vlassis},
title = {FastMotif: spectral sequence motif discovery},
journal = {Bioinform.},
volume = {31},
number = {16},
pages = {2623--2631},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv208},
doi = {10.1093/BIOINFORMATICS/BTV208},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ColomboV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CorpasJBBBFGGKLMMPRTVWSA15,
author = {Manuel Corpas and
Rafael C. Jim{\'{e}}nez and
Erik Bongcam{-}Rudloff and
Aidan Budd and
Michelle D. Brazas and
Pedro L. Fernandes and
Bruno A. Ga{\"{e}}ta and
Celia W. G. van Gelder and
Eija Korpelainen and
Fran Lewitter and
Annette McGrath and
Daniel MacLean and
Patricia M. Palagi and
Kristian Rother and
Jan Taylor and
Allegra Via and
Mick Watson and
Maria Victoria Schneider and
Teresa K. Attwood},
title = {The {GOBLET} training portal: a global repository of bioinformatics
training materials, courses and trainers},
journal = {Bioinform.},
volume = {31},
number = {1},
pages = {140--142},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu601},
doi = {10.1093/BIOINFORMATICS/BTU601},
timestamp = {Thu, 25 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CorpasJBBBFGGKLMMPRTVWSA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CorrellBSOG15,
author = {Michael Correll and
Adam L. Bailey and
Alper Sarikaya and
David H. O'Connor and
Michael Gleicher},
title = {LayerCake: a tool for the visual comparison of viral deep sequencing
data},
journal = {Bioinform.},
volume = {31},
number = {21},
pages = {3522--3528},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv407},
doi = {10.1093/BIOINFORMATICS/BTV407},
timestamp = {Sat, 16 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CorrellBSOG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CourtotMDDGJTMM15,
author = {M{\'{e}}lanie Courtot and
Justin Meskas and
Alexander D. Diehl and
Radina Droumeva and
Raphael Gottardo and
Adrin Jalali and
Mohammad Jafar Taghiyar and
Holden T. Maecker and
J. Philip McCoy and
Alan Ruttenberg and
Richard H. Scheuermann and
Ryan Remy Brinkman},
title = {flowCL: ontology-based cell population labelling in flow cytometry},
journal = {Bioinform.},
volume = {31},
number = {8},
pages = {1337--1339},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu807},
doi = {10.1093/BIOINFORMATICS/BTU807},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CourtotMDDGJTMM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CromarZYP15,
author = {Graham L. Cromar and
Anthony Zhao and
Alex Yang and
John Parkinson},
title = {Hyperscape: visualization for complex biological networks},
journal = {Bioinform.},
volume = {31},
number = {20},
pages = {3390--3391},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv385},
doi = {10.1093/BIOINFORMATICS/BTV385},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CromarZYP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CuiNG15,
author = {Xuefeng Cui and
Hammad Naveed and
Xin Gao},
title = {Finding optimal interaction interface alignments between biological
complexes},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {133--141},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv242},
doi = {10.1093/BIOINFORMATICS/BTV242},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CuiNG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DaigleSPS15,
author = {Bernie J. Daigle Jr. and
Mohammad Soltani and
Linda R. Petzold and
Abhyudai Singh},
title = {Inferring single-cell gene expression mechanisms using stochastic
simulation},
journal = {Bioinform.},
volume = {31},
number = {9},
pages = {1428--1435},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv007},
doi = {10.1093/BIOINFORMATICS/BTV007},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DaigleSPS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DallOlioVBWL15,
author = {Giovanni Marco Dall'Olio and
Ali R. Vahdati and
Jaume Bertranpetit and
Andreas Wagner and
Hafid Laayouni},
title = {VCF2Networks: applying genotype networks to single-nucleotide variants
data},
journal = {Bioinform.},
volume = {31},
number = {3},
pages = {438--439},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu650},
doi = {10.1093/BIOINFORMATICS/BTU650},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DallOlioVBWL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DasLSDLO15,
author = {Sayoni Das and
David A. Lee and
Ian Sillitoe and
Natalie L. Dawson and
Jonathan G. Lees and
Christine A. Orengo},
title = {Functional classification of {CATH} superfamilies: a domain-based
approach for protein function annotation},
journal = {Bioinform.},
volume = {31},
number = {21},
pages = {3460--3467},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv398},
doi = {10.1093/BIOINFORMATICS/BTV398},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DasLSDLO15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DaviesDHPHCJHEO15,
author = {Mark Davies and
Nathan Dedman and
Anne Hersey and
George Papadatos and
Matthew D. Hall and
Lourdes Cucurull{-}Sanchez and
Phil Jeffrey and
Samiul Hasan and
Peter J. Eddershaw and
John P. Overington},
title = {{ADME} SARfari: comparative genomics of drug metabolizing systems},
journal = {Bioinform.},
volume = {31},
number = {10},
pages = {1695--1697},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv010},
doi = {10.1093/BIOINFORMATICS/BTV010},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DaviesDHPHCJHEO15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DavisYMSP15,
author = {Darren Davis and
{\"{O}}mer Nebil Yaveroglu and
No{\"{e}}l Malod{-}Dognin and
Aleksandar Stojmirovic and
Natasa Przulj},
title = {Topology-function conservation in protein-protein interaction networks},
journal = {Bioinform.},
volume = {31},
number = {10},
pages = {1632--1639},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv026},
doi = {10.1093/BIOINFORMATICS/BTV026},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DavisYMSP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DayarianRWBBHMNRBLT15,
author = {Adel Dayarian and
Roberto Romero and
Zhiming Wang and
Michael Biehl and
Erhan Bilal and
Sahand Hormoz and
Pablo Meyer and
Raquel Norel and
Kahn Rhrissorrakrai and
Gyan Bhanot and
Feng Luo and
Adi L. Tarca},
title = {Predicting protein phosphorylation from gene expression: top methods
from the {IMPROVER} Species Translation Challenge},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {462--470},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu490},
doi = {10.1093/BIOINFORMATICS/BTU490},
timestamp = {Fri, 01 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DayarianRWBBHMNRBLT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DecapRHCF15,
author = {Dries Decap and
Joke Reumers and
Charlotte Herzeel and
Pascal Costanza and
Jan Fostier},
title = {Halvade: scalable sequence analysis with MapReduce},
journal = {Bioinform.},
volume = {31},
number = {15},
pages = {2482--2488},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv179},
doi = {10.1093/BIOINFORMATICS/BTV179},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DecapRHCF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DelgadoMMGB15,
author = {Soledad Delgado and
Federico Mor{\'{a}}n and
Antonio Mora Garc{\'{\i}}a and
Juan Juli{\'{a}}n Merelo Guerv{\'{o}}s and
Carlos Briones},
title = {A novel representation of genomic sequences for taxonomic clustering
and visualization by means of self-organizing maps},
journal = {Bioinform.},
volume = {31},
number = {5},
pages = {736--744},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu708},
doi = {10.1093/BIOINFORMATICS/BTU708},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DelgadoMMGB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DengWL15,
author = {Fei Deng and
Lusheng Wang and
Xiaowen Liu},
title = {An efficient algorithm for the blocked pattern matching problem},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {532--538},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu678},
doi = {10.1093/BIOINFORMATICS/BTU678},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DengWL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DentDLLLLN15,
author = {Jennifer E. Dent and
Valentina Devescovi and
Han Li and
Pietro Di Lena and
Youtao Lu and
Yuanhua Liu and
Christine Nardini},
title = {Mechanotransduction map: simulation model, molecular pathway, gene
set},
journal = {Bioinform.},
volume = {31},
number = {7},
pages = {1053--1059},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu776},
doi = {10.1093/BIOINFORMATICS/BTU776},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DentDLLLLN15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DeorowiczKGD15,
author = {Sebastian Deorowicz and
Marek Kokot and
Szymon Grabowski and
Agnieszka Debudaj{-}Grabysz},
title = {{KMC} 2: fast and resource-frugal \emph{k}-mer counting},
journal = {Bioinform.},
volume = {31},
number = {10},
pages = {1569--1576},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv022},
doi = {10.1093/BIOINFORMATICS/BTV022},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DeorowiczKGD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DesoukiJGL15,
author = {Abdelmoneim Amer Desouki and
Florian Jarre and
Gabriel Gelius{-}Dietrich and
Martin J. Lercher},
title = {CycleFreeFlux: efficient removal of thermodynamically infeasible loops
from flux distributions},
journal = {Bioinform.},
volume = {31},
number = {13},
pages = {2159--2165},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv096},
doi = {10.1093/BIOINFORMATICS/BTV096},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DesoukiJGL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DialsinghAA15,
author = {Isaac Dialsingh and
Stefanie R. Austin and
Naomi S. Altman},
title = {Estimating the proportion of true null hypotheses when the statistics
are discrete},
journal = {Bioinform.},
volume = {31},
number = {14},
pages = {2303--2309},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv104},
doi = {10.1093/BIOINFORMATICS/BTV104},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DialsinghAA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DimontSKH15,
author = {Emmanuel Dimont and
Jiantao Shi and
Rory D. Kirchner and
Winston Hide},
title = {edgeRun: an {R} package for sensitive, functionally relevant differential
expression discovery using an unconditional exact test},
journal = {Bioinform.},
volume = {31},
number = {15},
pages = {2589--2590},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv209},
doi = {10.1093/BIOINFORMATICS/BTV209},
timestamp = {Thu, 25 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DimontSKH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DingLH15,
author = {Jun Ding and
Xiaoman Li and
Haiyan Hu},
title = {MicroRNA modules prefer to bind weak and unconventional target sites},
journal = {Bioinform.},
volume = {31},
number = {9},
pages = {1366--1374},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu833},
doi = {10.1093/BIOINFORMATICS/BTU833},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DingLH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DingXLMSMC15,
author = {Liang Ding and
Xingran Xue and
Sal LaMarca and
Mohammad Mohebbi and
Abdul Samad and
Russell L. Malmberg and
Liming Cai},
title = {Accurate prediction of {RNA} nucleotide interactions with backbone
\emph{k}-tree model},
journal = {Bioinform.},
volume = {31},
number = {16},
pages = {2660--2667},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv210},
doi = {10.1093/BIOINFORMATICS/BTV210},
timestamp = {Fri, 10 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DingXLMSMC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DingZZLJAWW15,
author = {Bo Ding and
Lina Zheng and
Yun Zhu and
Nan Li and
Haiyang Jia and
Rizi Ai and
Andre Wildberg and
Wei Wang},
title = {Normalization and noise reduction for single cell RNA-seq experiments},
journal = {Bioinform.},
volume = {31},
number = {13},
pages = {2225--2227},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv122},
doi = {10.1093/BIOINFORMATICS/BTV122},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DingZZLJAWW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DottoCSSPOW15,
author = {Bruno Reis Dotto and
Evelise Leis Carvalho and
Alexandre Freitas Silva and
Luiz Fernando Duarte Silva and
Paulo Marcos Pinto and
Mauro Freitas Ortiz and
Gabriel da Luz Wallau},
title = {{HTT-DB:} Horizontally transferred transposable elements database},
journal = {Bioinform.},
volume = {31},
number = {17},
pages = {2915--2917},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv281},
doi = {10.1093/BIOINFORMATICS/BTV281},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DottoCSSPOW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DowstPWMBQB15,
author = {Heidi Dowst and
Benjamin Pew and
Chris Watkins and
Apollo McOwiti and
Jonathan Barney and
Shijing Qu and
Lauren B. Becnel},
title = {Acquire: an open-source comprehensive cancer biobanking system},
journal = {Bioinform.},
volume = {31},
number = {10},
pages = {1655--1662},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv012},
doi = {10.1093/BIOINFORMATICS/BTV012},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DowstPWMBQB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DrogeGM15,
author = {Johannes Dr{\"{o}}ge and
I. Gregor and
Alice Carolyn McHardy},
title = {\emph{Taxator-tk}: precise taxonomic assignment of metagenomes by
fast approximation of evolutionary neighborhoods},
journal = {Bioinform.},
volume = {31},
number = {6},
pages = {817--824},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu745},
doi = {10.1093/BIOINFORMATICS/BTU745},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DrogeGM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DruetG15,
author = {Tom Druet and
Michel Georges},
title = {{LINKPHASE3:} an improved pedigree-based phasing algorithm robust
to genotyping and map errors},
journal = {Bioinform.},
volume = {31},
number = {10},
pages = {1677--1679},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu859},
doi = {10.1093/BIOINFORMATICS/BTU859},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DruetG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DucheneH15,
author = {Sebasti{\'{a}}n Duch{\^{e}}ne and
Simon Y. W. Ho},
title = {Mammalian genome evolution is governed by multiple pacemakers},
journal = {Bioinform.},
volume = {31},
number = {13},
pages = {2061--2065},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv121},
doi = {10.1093/BIOINFORMATICS/BTV121},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DucheneH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DuffyR15,
author = {Fergal J. Duffy and
Pauline M. Rudd},
title = {GlycoProfileAssigner: automated structural assignment with error estimation
for glycan {LC} data},
journal = {Bioinform.},
volume = {31},
number = {13},
pages = {2220--2221},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv129},
doi = {10.1093/BIOINFORMATICS/BTV129},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DuffyR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EdgarF15,
author = {Robert C. Edgar and
Henrik Flyvbjerg},
title = {Error filtering, pair assembly and error correction for next-generation
sequencing reads},
journal = {Bioinform.},
volume = {31},
number = {21},
pages = {3476--3482},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv401},
doi = {10.1093/BIOINFORMATICS/BTV401},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/EdgarF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EdmandsBS15,
author = {William M. B. Edmands and
Dinesh K. Barupal and
Augustin Scalbert},
title = {MetMSLine: an automated and fully integrated pipeline for rapid processing
of high-resolution {LC-MS} metabolomic datasets},
journal = {Bioinform.},
volume = {31},
number = {5},
pages = {788--790},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu705},
doi = {10.1093/BIOINFORMATICS/BTU705},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/EdmandsBS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/El-KebirOAR15,
author = {Mohammed El{-}Kebir and
Layla Oesper and
Hannah Acheson{-}Field and
Benjamin J. Raphael},
title = {Reconstruction of clonal trees and tumor composition from multi-sample
sequencing data},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {62--70},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv261},
doi = {10.1093/BIOINFORMATICS/BTV261},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/El-KebirOAR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/El-KebirSHBDMBH15,
author = {Mohammed El{-}Kebir and
Hayssam Soueidan and
Thomas Hume and
Daniela Beisser and
Marcus T. Dittrich and
Tobias M{\"{u}}ller and
Guillaume Blin and
Jaap Heringa and
Macha Nikolski and
Lodewyk F. A. Wessels and
Gunnar W. Klau},
title = {xHeinz: an algorithm for mining cross-species network modules under
a flexible conservation model},
journal = {Bioinform.},
volume = {31},
number = {19},
pages = {3147--3155},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv316},
doi = {10.1093/BIOINFORMATICS/BTV316},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/El-KebirSHBDMBH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EtheringtonRM15,
author = {Graham J. Etherington and
Ricardo H. Ramirez{-}Gonzalez and
Dan MacLean},
title = {bio-samtools 2: a package for analysis and visualization of sequence
and alignment data with SAMtools in Ruby},
journal = {Bioinform.},
volume = {31},
number = {15},
pages = {2565--2567},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv178},
doi = {10.1093/BIOINFORMATICS/BTV178},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/EtheringtonRM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EuesdenLO15,
author = {Jack Euesden and
Cathryn M. Lewis and
Paul F. O'Reilly},
title = {PRSice: Polygenic Risk Score software},
journal = {Bioinform.},
volume = {31},
number = {9},
pages = {1466--1468},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu848},
doi = {10.1093/BIOINFORMATICS/BTU848},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/EuesdenLO15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EyalLB15,
author = {Eran Eyal and
Gengkon Lum and
Ivet Bahar},
title = {The anisotropic network model web server at 2015 {(ANM} 2.0)},
journal = {Bioinform.},
volume = {31},
number = {9},
pages = {1487--1489},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu847},
doi = {10.1093/BIOINFORMATICS/BTU847},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/EyalLB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FangHZD15,
author = {Huaying Fang and
Chengcheng Huang and
Hongyu Zhao and
Minghua Deng},
title = {CCLasso: correlation inference for compositional data through Lasso},
journal = {Bioinform.},
volume = {31},
number = {19},
pages = {3172--3180},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv349},
doi = {10.1093/BIOINFORMATICS/BTV349},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FangHZD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FariselliMSC15,
author = {Piero Fariselli and
Pier Luigi Martelli and
Castrense Savojardo and
Rita Casadio},
title = {{INPS:} predicting the impact of non-synonymous variations on protein
stability from sequence},
journal = {Bioinform.},
volume = {31},
number = {17},
pages = {2816--2821},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv291},
doi = {10.1093/BIOINFORMATICS/BTV291},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FariselliMSC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FenollosaOACOG15,
author = {Carlos Fenollosa and
Marcel Ot{\'{o}}n and
Pau Andrio and
Jorge Cort{\'{e}}s and
Modesto Orozco and
Josep Ram{\'{o}}n Go{\~{n}}i},
title = {{SEABED:} Small molEcule activity scanner weB servicE baseD},
journal = {Bioinform.},
volume = {31},
number = {5},
pages = {773--775},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu709},
doi = {10.1093/BIOINFORMATICS/BTU709},
timestamp = {Fri, 07 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FenollosaOACOG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FenyoB15,
author = {David Feny{\"{o}} and
Ronald C. Beavis},
title = {The {GPMDB} {REST} interface},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {2056--2058},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv107},
doi = {10.1093/BIOINFORMATICS/BTV107},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FenyoB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FerminACN15,
author = {Damian Fermin and
Dmitry Avtonomov and
Hyungwon Choi and
Alexey I. Nesvizhskii},
title = {LuciPHOr2: site localization of generic post-translational modifications
from tandem mass spectrometry data},
journal = {Bioinform.},
volume = {31},
number = {7},
pages = {1141--1143},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu788},
doi = {10.1093/BIOINFORMATICS/BTU788},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FerminACN15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FieldCCEVWAG15,
author = {Matthew A. Field and
Vicky Cho and
Matthew C. Cook and
Anselm Enders and
Carola G. Vinuesa and
Belinda Whittle and
T. Daniel Andrews and
Chris C. Goodnow},
title = {Reducing the search space for causal genetic variants with {VASP}},
journal = {Bioinform.},
volume = {31},
number = {14},
pages = {2377--2379},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv135},
doi = {10.1093/BIOINFORMATICS/BTV135},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FieldCCEVWAG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FischMGDCLS15,
author = {Kathleen M. Fisch and
Tobias Mei{\ss}ner and
Louis Gioia and
Jean{-}Christophe Ducom and
Tristan M. Carland and
Salvatore Loguercio and
Andrew I. Su},
title = {Omics Pipe: a community-based framework for reproducible multi-omics
data analysis},
journal = {Bioinform.},
volume = {31},
number = {11},
pages = {1724--1728},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv061},
doi = {10.1093/BIOINFORMATICS/BTV061},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FischMGDCLS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FischerCSCCSV15,
author = {Carlos N. Fischer and
Claudia M. A. Carareto and
Renato Augusto Corr{\^{e}}a dos Santos and
Ricardo Cerri and
Eduardo P. Costa and
Leander Schietgat and
Celine Vens},
title = {Learning HMMs for nucleotide sequences from amino acid alignments},
journal = {Bioinform.},
volume = {31},
number = {11},
pages = {1836--1838},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv054},
doi = {10.1093/BIOINFORMATICS/BTV054},
timestamp = {Sat, 18 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FischerCSCCSV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FisherM15,
author = {Charles K. Fisher and
Pankaj Mehta},
title = {Bayesian feature selection for high-dimensional linear regression
via the Ising approximation with applications to genomics},
journal = {Bioinform.},
volume = {31},
number = {11},
pages = {1754--1761},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv037},
doi = {10.1093/BIOINFORMATICS/BTV037},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FisherM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FoggK15,
author = {Christiana N. Fogg and
Diane E. Kovats},
title = {Message from the {ISCB:} {ISMB/ECCB} Rebooted: 2015 Brings Major Update
to the Conference Program},
journal = {Bioinform.},
volume = {31},
number = {11},
pages = {1878--1879},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv207},
doi = {10.1093/BIOINFORMATICS/BTV207},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FoggK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FoggK15a,
author = {Christiana N. Fogg and
Diane E. Kovats},
title = {Message from {ISCB:} Outstanding contributions to {ISCB} award},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {2059--2060},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv206},
doi = {10.1093/BIOINFORMATICS/BTV206},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FoggK15a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FoggK15b,
author = {Christiana N. Fogg and
Diane E. Kovats},
title = {Message from the {ISCB:} 2015 {ISCB} Accomplishment by a Senior Scientist
Award: Cyrus Chothia},
journal = {Bioinform.},
volume = {31},
number = {13},
pages = {2238--2239},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv218},
doi = {10.1093/BIOINFORMATICS/BTV218},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FoggK15b.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FolkmanYLSSMCLZ15,
author = {Lukas Folkman and
Yuedong Yang and
Zhixiu Li and
Bela Stantic and
Abdul Sattar and
Matthew E. Mort and
David N. Cooper and
Yunlong Liu and
Yaoqi Zhou},
title = {DDIG-in: detecting disease-causing genetic variations due to frameshifting
indels and nonsense mutations employing sequence and structural properties
at nucleotide and protein levels},
journal = {Bioinform.},
volume = {31},
number = {10},
pages = {1599--1606},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu862},
doi = {10.1093/BIOINFORMATICS/BTU862},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FolkmanYLSSMCLZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FrazeeJLL15,
author = {Alyssa C. Frazee and
Andrew E. Jaffe and
Ben Langmead and
Jeffrey T. Leek},
title = {\emph{Polyester}: simulating RNA-seq datasets with differential transcript
expression},
journal = {Bioinform.},
volume = {31},
number = {17},
pages = {2778--2784},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv272},
doi = {10.1093/BIOINFORMATICS/BTV272},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FrazeeJLL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FreireDFVC15,
author = {Jo{\~{a}}o Miguel Freire and
Susana Almeida Dias and
Lu{\'{\i}}s Flores and
Ana Salom{\'{e}} Veiga and
Miguel A. R. B. Castanho},
title = {Mining viral proteins for antimicrobial and cell-penetrating drug
delivery peptides},
journal = {Bioinform.},
volume = {31},
number = {14},
pages = {2252--2256},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv131},
doi = {10.1093/BIOINFORMATICS/BTV131},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FreireDFVC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FriebelNJHHDH15,
author = {Adrian Friebel and
Johannes Neitsch and
Tim Johann and
Seddik Hammad and
Jan G. Hengstler and
Dirk Drasdo and
Stefan Hoehme},
title = {TiQuant: software for tissue analysis, quantification and surface
reconstruction},
journal = {Bioinform.},
volume = {31},
number = {19},
pages = {3234--3236},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv346},
doi = {10.1093/BIOINFORMATICS/BTV346},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FriebelNJHHDH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FrishbergSG15,
author = {Amit Frishberg and
Yael Steuerman and
Irit Gat{-}Viks},
title = {CoD: inferring immune-cell quantities related to disease states},
journal = {Bioinform.},
volume = {31},
number = {24},
pages = {3961--3969},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv498},
doi = {10.1093/BIOINFORMATICS/BTV498},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FrishbergSG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Frohlich15,
author = {Holger Fr{\"{o}}hlich},
title = {biRte: Bayesian inference of context-specific regulator activities
and transcriptional networks},
journal = {Bioinform.},
volume = {31},
number = {20},
pages = {3290--3298},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv379},
doi = {10.1093/BIOINFORMATICS/BTV379},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Frohlich15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FuchsbergerAH15,
author = {Christian Fuchsberger and
Gon{\c{c}}alo R. Abecasis and
David A. Hinds},
title = {minimac2: faster genotype imputation},
journal = {Bioinform.},
volume = {31},
number = {5},
pages = {782--784},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu704},
doi = {10.1093/BIOINFORMATICS/BTU704},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FuchsbergerAH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FullerMHS0W15,
author = {Jonathan C. Fuller and
Michael Martinez and
Stefan Henrich and
Antonia Stank and
Stefan Richter and
Rebecca C. Wade},
title = {LigDig: a web server for querying ligand-protein interactions},
journal = {Bioinform.},
volume = {31},
number = {7},
pages = {1147--1149},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu784},
doi = {10.1093/BIOINFORMATICS/BTU784},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FullerMHS0W15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GaidatzisLHS15,
author = {Dimos Gaidatzis and
Anita Lerch and
Florian Hahne and
Michael B. Stadler},
title = {QuasR: quantification and annotation of short reads in {R}},
journal = {Bioinform.},
volume = {31},
number = {7},
pages = {1130--1132},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu781},
doi = {10.1093/BIOINFORMATICS/BTU781},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GaidatzisLHS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Galili15,
author = {Tal Galili},
title = {dendextend: an {R} package for visualizing, adjusting and comparing
trees of hierarchical clustering},
journal = {Bioinform.},
volume = {31},
number = {22},
pages = {3718--3720},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv428},
doi = {10.1093/BIOINFORMATICS/BTV428},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Galili15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GaoC15,
author = {Bin Gao and
Yuehua Cui},
title = {Learning directed acyclic graphical structures with genetical genomics
data},
journal = {Bioinform.},
volume = {31},
number = {24},
pages = {3953--3960},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv513},
doi = {10.1093/BIOINFORMATICS/BTV513},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GaoC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GaoZMLSCZGLGFYO15,
author = {Shengjie Gao and
Dan Zou and
Likai Mao and
Huayu Liu and
Pengfei Song and
Youguo Chen and
Shancen Zhao and
Changduo Gao and
Xiangchun Li and
Zhibo Gao and
Xiaodong Fang and
Huanming Yang and
Torben F. {\O}rntoft and
Karina D. S{\o}rensen and
Lars Bolund},
title = {BS-SNPer: {SNP} calling in bisulfite-seq data},
journal = {Bioinform.},
volume = {31},
number = {24},
pages = {4006--4008},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv507},
doi = {10.1093/BIOINFORMATICS/BTV507},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GaoZMLSCZGLGFYO15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GardnerSH15,
author = {Shea N. Gardner and
Tom Slezak and
Barry G. Hall},
title = {kSNP3.0: {SNP} detection and phylogenetic analysis of genomes without
genome alignment or reference genome},
journal = {Bioinform.},
volume = {31},
number = {17},
pages = {2877--2878},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv271},
doi = {10.1093/BIOINFORMATICS/BTV271},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GardnerSH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GaudreaultMN15,
author = {Francis Gaudreault and
Louis{-}Philippe Morency and
Rafael J. Najmanovich},
title = {NRGsuite: a PyMOL plugin to perform docking simulations in real time
using FlexAID},
journal = {Bioinform.},
volume = {31},
number = {23},
pages = {3856--3858},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv458},
doi = {10.1093/BIOINFORMATICS/BTV458},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GaudreaultMN15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GayeBB15,
author = {Amadou Gaye and
Thomas W. Y. Burton and
Paul R. Burton},
title = {{ESPRESSO:} taking into account assessment errors on outcome and exposures
in power analysis for association studies},
journal = {Bioinform.},
volume = {31},
number = {16},
pages = {2691--2696},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv219},
doi = {10.1093/BIOINFORMATICS/BTV219},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GayeBB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Gehring0LH15,
author = {Julian Gehring and
Bernd Fischer and
Michael F. Lawrence and
Wolfgang Huber},
title = {SomaticSignatures: inferring mutational signatures from single-nucleotide
variants},
journal = {Bioinform.},
volume = {31},
number = {22},
pages = {3673--3675},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv408},
doi = {10.1093/BIOINFORMATICS/BTV408},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Gehring0LH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GehrmannR15,
author = {Thies Gehrmann and
Marcel J. T. Reinders},
title = {Proteny: discovering and visualizing statistically significant syntenic
clusters at the proteome level},
journal = {Bioinform.},
volume = {31},
number = {21},
pages = {3437--3444},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv389},
doi = {10.1093/BIOINFORMATICS/BTV389},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GehrmannR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GeihsYWHMMMCHTD15,
author = {Matthias Geihs and
Ying Yan and
Klaudia Walter and
Jie Huang and
Yasin Memari and
Josine L. Min and
Daniel Mead and
Tim J. P. Hubbard and
Nicholas J. Timpson and
Thomas A. Down and
Nicole Soranzo},
title = {An interactive genome browser of association results from the {UK10K}
cohorts project},
journal = {Bioinform.},
volume = {31},
number = {24},
pages = {4029--4031},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv491},
doi = {10.1093/BIOINFORMATICS/BTV491},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GeihsYWHMMMCHTD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GerstlJZ15,
author = {Matthias P. Gerstl and
Christian Jungreuthmayer and
J{\"{u}}rgen Zanghellini},
title = {tEFMA: computing thermodynamically feasible elementary flux modes
in metabolic networks},
journal = {Bioinform.},
volume = {31},
number = {13},
pages = {2232--2234},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv111},
doi = {10.1093/BIOINFORMATICS/BTV111},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GerstlJZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Gevaert15,
author = {Olivier Gevaert},
title = {MethylMix: an {R} package for identifying {DNA} methylation-driven
genes},
journal = {Bioinform.},
volume = {31},
number = {11},
pages = {1839--1841},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv020},
doi = {10.1093/BIOINFORMATICS/BTV020},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Gevaert15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GfellerZ15,
author = {David Gfeller and
Vincent Zoete},
title = {Protein homology reveals new targets for bioactive small molecules},
journal = {Bioinform.},
volume = {31},
number = {16},
pages = {2721--2727},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv214},
doi = {10.1093/BIOINFORMATICS/BTV214},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GfellerZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GhadieJP15,
author = {Mohamed A. Ghadie and
Nathalie Japkowicz and
Theodore J. Perkins},
title = {Gene selection for the reconstruction of stem cell differentiation
trees: a linear programming approach},
journal = {Bioinform.},
volume = {31},
number = {16},
pages = {2676--2682},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv192},
doi = {10.1093/BIOINFORMATICS/BTV192},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GhadieJP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GhoraieBZ15,
author = {Laleh Soltan Ghoraie and
Forbes J. Burkowski and
Mu Zhu},
title = {Using kernelized partial canonical correlation analysis to study directly
coupled side chains and allostery in small {G} proteins},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {124--132},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv241},
doi = {10.1093/BIOINFORMATICS/BTV241},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GhoraieBZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GhouzamPBG15,
author = {Yassine Ghouzam and
Guillaume Postic and
Alexandre G. de Brevern and
Jean{-}Christophe Gelly},
title = {Improving protein fold recognition with hybrid profiles combining
sequence and structure evolution},
journal = {Bioinform.},
volume = {31},
number = {23},
pages = {3782--3789},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv462},
doi = {10.1093/BIOINFORMATICS/BTV462},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GhouzamPBG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GiacomoniCMLPPD15,
author = {Franck Giacomoni and
Gildas Le Corguill{\'{e}} and
Misharl Monsoor and
Marion Landi and
Pierre Pericard and
M{\'{e}}lanie P{\'{e}}t{\'{e}}ra and
Christophe Duperier and
Marie Tremblay{-}Franco and
Jean{-}Fran{\c{c}}ois Martin and
Daniel Jacob and
Sophie Goulitquer and
Etienne A. Th{\'{e}}venot and
Christophe Caron},
title = {Workflow4Metabolomics: a collaborative research infrastructure for
computational metabolomics},
journal = {Bioinform.},
volume = {31},
number = {9},
pages = {1493--1495},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu813},
doi = {10.1093/BIOINFORMATICS/BTU813},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GiacomoniCMLPPD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GiancarloRU15,
author = {Raffaele Giancarlo and
Simona E. Rombo and
Filippo Utro},
title = {Epigenomic \emph{k}-mer dictionaries: shedding light on how sequence
composition influences \emph{in vivo} nucleosome positioning},
journal = {Bioinform.},
volume = {31},
number = {18},
pages = {2939--2946},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv295},
doi = {10.1093/BIOINFORMATICS/BTV295},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GiancarloRU15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GibbS15,
author = {Sebastian Gibb and
Korbinian Strimmer},
title = {Differential protein expression and peak selection in mass spectrometry
data by binary discriminant analysis},
journal = {Bioinform.},
volume = {31},
number = {19},
pages = {3156--3162},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv334},
doi = {10.1093/BIOINFORMATICS/BTV334},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GibbS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GibbonsCMTP15,
author = {Bryson C. Gibbons and
Matthew Chambers and
Matthew E. Monroe and
David L. Tabb and
Samuel H. Payne},
title = {Correcting systematic bias and instrument measurement drift with mzRefinery},
journal = {Bioinform.},
volume = {31},
number = {23},
pages = {3838--3840},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv437},
doi = {10.1093/BIOINFORMATICS/BTV437},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GibbonsCMTP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GierlinskiCSSSS15,
author = {Marek Gierlinski and
Christian Cole and
Piet{\`{a}} Schofield and
Nicholas J. Schurch and
Alexander Sherstnev and
Vijender Singh and
Nicola Wrobel and
Karim Gharbi and
Gordon G. Simpson and
Tom Owen{-}Hughes and
Mark L. Blaxter and
Geoffrey J. Barton},
title = {Statistical models for RNA-seq data derived from a two-condition 48-replicate
experiment},
journal = {Bioinform.},
volume = {31},
number = {22},
pages = {3625--3630},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv425},
doi = {10.1093/BIOINFORMATICS/BTV425},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GierlinskiCSSSS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GieseAHBDWBK15,
author = {Heiko Giese and
J{\"{o}}rg Ackermann and
Heinrich Heide and
Lea Bleier and
Stefan Dr{\"{o}}se and
Ilka Wittig and
Ulrich Brandt and
Ina Koch},
title = {{NOVA:} a software to analyze complexome profiling data},
journal = {Bioinform.},
volume = {31},
number = {3},
pages = {440--441},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu623},
doi = {10.1093/BIOINFORMATICS/BTU623},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GieseAHBDWBK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Gillet-Markowska15,
author = {Alexandre Gillet{-}Markowska and
Hugues Richard and
Gilles Fischer and
Ingrid Lafontaine},
title = {Ulysses: accurate detection of low-frequency structural variations
in large insert-size sequencing libraries},
journal = {Bioinform.},
volume = {31},
number = {6},
pages = {801--808},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu730},
doi = {10.1093/BIOINFORMATICS/BTU730},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Gillet-Markowska15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GilliesRSK15,
author = {Christopher E. Gillies and
Catherine C. Robertson and
Matthew G. Sampson and
Hyun Min Kang},
title = {GeneVetter: a web tool for quantitative monogenic assessment of rare
diseases},
journal = {Bioinform.},
volume = {31},
number = {22},
pages = {3682--3684},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv432},
doi = {10.1093/BIOINFORMATICS/BTV432},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GilliesRSK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GimenoAHGGCG15,
author = {Alejandro Gimeno and
Pablo Ares and
Ignacio Horcas and
Adriana Gil and
Jos{\'{e}} M. G{\'{o}}mez{-}Rodr{\'{\i}}guez and
Jaime Colchero and
Julio G{\'{o}}mez{-}Herrero},
title = {'Flatten plus': a recent implementation in WSxM for biological research},
journal = {Bioinform.},
volume = {31},
number = {17},
pages = {2918--2920},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv278},
doi = {10.1093/BIOINFORMATICS/BTV278},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GimenoAHGGCG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GiriSCKB15,
author = {Varun Giri and
Tadi Venkata Sivakumar and
Kwang Myung Cho and
Tae Yong Kim and
Anirban Bhaduri},
title = {RxnSim: a tool to compare biochemical reactions},
journal = {Bioinform.},
volume = {31},
number = {22},
pages = {3712--3714},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv416},
doi = {10.1093/BIOINFORMATICS/BTV416},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GiriSCKB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GiuliettiMAPP15,
author = {Matteo Giulietti and
Sara Armida Milantoni and
Tatiana Armeni and
Giovanni Principato and
Francesco Piva},
title = {ExportAid: database of {RNA} elements regulating nuclear {RNA} export
in mammals},
journal = {Bioinform.},
volume = {31},
number = {2},
pages = {246--251},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu620},
doi = {10.1093/BIOINFORMATICS/BTU620},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GiuliettiMAPP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GkantounaKVIPLZPTP15,
author = {Vassiliki A. Gkantouna and
Manousos E. Kambouris and
Emmanouil Viennas and
Zafeiria{-}Marina Ioannou and
Michael Paraskevas and
George Lagoumintzis and
Zoi Zagoriti and
George P. Patrinos and
Giannis E. Tzimas and
Konstantinos Poulas},
title = {Introducing dAUTObase: a first step towards the global scale geoepidemiology
of autoimmune syndromes and diseases},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {581--586},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu690},
doi = {10.1093/BIOINFORMATICS/BTU690},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GkantounaKVIPLZPTP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Glaab015,
author = {Enrico Glaab and
Reinhard Schneider},
title = {RepExplore: addressing technical replicate variance in proteomics
and metabolomics data analysis},
journal = {Bioinform.},
volume = {31},
number = {13},
pages = {2235--2237},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv127},
doi = {10.1093/BIOINFORMATICS/BTV127},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Glaab015.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GleissDMH15,
author = {Andreas Gleiss and
Mohammed Dakna and
Harald Mischak and
Georg Heinze},
title = {Two-group comparisons of zero-inflated intensity values: the choice
of test statistic matters},
journal = {Bioinform.},
volume = {31},
number = {14},
pages = {2310--2317},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv154},
doi = {10.1093/BIOINFORMATICS/BTV154},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GleissDMH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GoncalvesGAMSPM15,
author = {Wellisson R. S. Gon{\c{c}}alves and
Valdete M. Gon{\c{c}}alves{-}Almeida and
Aleksander L. Arruda and
Wagner Meira Jr. and
Carlos Henrique da Silveira and
Douglas E. V. Pires and
Raquel Cardoso de Melo Minardi},
title = {PDBest: a user-friendly platform for manipulating and enhancing protein
structures},
journal = {Bioinform.},
volume = {31},
number = {17},
pages = {2894--2896},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv223},
doi = {10.1093/BIOINFORMATICS/BTV223},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GoncalvesGAMSPM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GoslineOF15,
author = {Sara J. C. Gosline and
Coyin Oh and
Ernest Fraenkel},
title = {SAMNetWeb: identifying condition-specific networks linking signaling
and transcription},
journal = {Bioinform.},
volume = {31},
number = {7},
pages = {1124--1126},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu748},
doi = {10.1093/BIOINFORMATICS/BTU748},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GoslineOF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GrabowskiDR15,
author = {Szymon Grabowski and
Sebastian Deorowicz and
Lukasz Roguski},
title = {Disk-based compression of data from genome sequencing},
journal = {Bioinform.},
volume = {31},
number = {9},
pages = {1389--1395},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu844},
doi = {10.1093/BIOINFORMATICS/BTU844},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GrabowskiDR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GrapovWF15,
author = {Dmitry Grapov and
Kwanjeera Wanichthanarak and
Oliver Fiehn},
title = {MetaMapR: pathway independent metabolomic network analysis incorporating
unknowns},
journal = {Bioinform.},
volume = {31},
number = {16},
pages = {2757--2760},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv194},
doi = {10.1093/BIOINFORMATICS/BTV194},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GrapovWF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GrauGK15,
author = {Jan Grau and
Ivo Grosse and
Jens Keilwagen},
title = {{PRROC:} computing and visualizing precision-recall and receiver operating
characteristic curves in {R}},
journal = {Bioinform.},
volume = {31},
number = {15},
pages = {2595--2597},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv153},
doi = {10.1093/BIOINFORMATICS/BTV153},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GrauGK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GrewalMR15,
author = {Rajdeep Kaur Grewal and
Devrani Mitra and
Soumen Roy},
title = {Mapping networks of light-dark transition in {LOV} photoreceptors},
journal = {Bioinform.},
volume = {31},
number = {22},
pages = {3608--3616},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv429},
doi = {10.1093/BIOINFORMATICS/BTV429},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GrewalMR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuardoMBPLCAVAT15,
author = {Mario Di Guardo and
Diego Micheletti and
Luca Bianco and
Herma J. J. Koehorst{-}van Putten and
Sara Longhi and
Fabrizio Costa and
Maria Jos{\'{e}} Aranzana and
Riccardo Velasco and
Pere Ar{\'{u}}s and
Michela Troggio and
Eric W. van de Weg},
title = {ASSIsT: an automatic {SNP} scoring tool for in- and outbreeding species},
journal = {Bioinform.},
volume = {31},
number = {23},
pages = {3873--3874},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv446},
doi = {10.1093/BIOINFORMATICS/BTV446},
timestamp = {Thu, 28 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuardoMBPLCAVAT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Guitart-PlaKRCS15,
author = {Oriol Guitart{-}Pla and
Manjunath Kustagi and
Frank R{\"{u}}gheimer and
Andrea Califano and
Benno Schwikowski},
title = {The Cyni framework for network inference in Cytoscape},
journal = {Bioinform.},
volume = {31},
number = {9},
pages = {1499--1501},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu812},
doi = {10.1093/BIOINFORMATICS/BTU812},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Guitart-PlaKRCS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GulaS15,
author = {Igor A. Gula and
Alexander M. Samsonov},
title = {A model for the expression of \emph{gap} genes based on the Jeffreys-type
equation},
journal = {Bioinform.},
volume = {31},
number = {5},
pages = {714--719},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu695},
doi = {10.1093/BIOINFORMATICS/BTU695},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GulaS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GulloGRPMPW15,
author = {Francesca Gullo and
Mark van der Garde and
Giulia Russo and
Marzio Pennisi and
Santo Motta and
Francesco Pappalardo and
Suzanne Watt},
title = {Computational modeling of the expansion of human cord blood CD133\({}^{\mbox{+}}\)
hematopoietic stem/progenitor cells with different cytokine combinations},
journal = {Bioinform.},
volume = {31},
number = {15},
pages = {2514--2522},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv172},
doi = {10.1093/BIOINFORMATICS/BTV172},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GulloGRPMPW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GunawardanaFTWW15,
author = {Yawwani Gunawardana and
Shuhei Fujiwara and
Akiko Takeda and
Jeongmin Woo and
Christopher H. Woelk and
Mahesan Niranjan},
title = {Outlier detection at the transcriptome-proteome interface},
journal = {Bioinform.},
volume = {31},
number = {15},
pages = {2530--2536},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv182},
doi = {10.1093/BIOINFORMATICS/BTV182},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GunawardanaFTWW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GundersenJRKMFH15,
author = {Gregory W. Gundersen and
Matthew R. Jones and
Andrew D. Rouillard and
Yan Kou and
Caroline D. Monteiro and
Axel S. Feldmann and
Kevin S. Hu and
Avi Ma'ayan},
title = {GEO2Enrichr: browser extension and server app to extract gene sets
from {GEO} and analyze them for biological functions},
journal = {Bioinform.},
volume = {31},
number = {18},
pages = {3060--3062},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv297},
doi = {10.1093/BIOINFORMATICS/BTV297},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GundersenJRKMFH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuoCW15,
author = {Yunfei Guo and
David V. Conti and
Kai Wang},
title = {Enlight: web-based integration of {GWAS} results with biological annotations},
journal = {Bioinform.},
volume = {31},
number = {2},
pages = {275--276},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu639},
doi = {10.1093/BIOINFORMATICS/BTU639},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuoCW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuoQJ15,
author = {Qingli Guo and
Xiongfei Qu and
Weibo Jin},
title = {PhaseTank: genome-wide computational identification of phasiRNAs and
their regulatory cascades},
journal = {Bioinform.},
volume = {31},
number = {2},
pages = {284--286},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu628},
doi = {10.1093/BIOINFORMATICS/BTU628},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuoQJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuoTBBWQONHY15,
author = {Zhengyu Guo and
Boriana Tzvetkova and
Jennifer M. Bassik and
Tara Bodziak and
Brianna M. Wojnar and
Wei Qiao and
Md A. Obaida and
Sacha B. Nelson and
Bo Hua Hu and
Peng Yu},
title = {RNASeqMetaDB: a database and web server for navigating metadata of
publicly available mouse RNA-Seq datasets},
journal = {Bioinform.},
volume = {31},
number = {24},
pages = {4038--4040},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv503},
doi = {10.1093/BIOINFORMATICS/BTV503},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuoTBBWQONHY15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuptaHUGYK15,
author = {Namita T. Gupta and
Jason A. Vander Heiden and
Mohamed Uduman and
Daniel Gadala{-}Maria and
Gur Yaari and
Steven H. Kleinstein},
title = {Change-O: a toolkit for analyzing large-scale {B} cell immunoglobulin
repertoire sequencing data},
journal = {Bioinform.},
volume = {31},
number = {20},
pages = {3356--3358},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv359},
doi = {10.1093/BIOINFORMATICS/BTV359},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuptaHUGYK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GusnantoTSSRW15,
author = {Arief Gusnanto and
Peter Tcherveniakov and
Farag Shuweihdi and
Manar Samman and
Pamela Rabbitts and
Henry M. Wood},
title = {Stratifying tumour subtypes based on copy number alteration profiles
using next-generation sequence data},
journal = {Bioinform.},
volume = {31},
number = {16},
pages = {2713--2720},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv191},
doi = {10.1093/BIOINFORMATICS/BTV191},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GusnantoTSSRW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Gutierrez-Sacristan15,
author = {Alba Guti{\'{e}}rrez{-}Sacrist{\'{a}}n and
Sol{\`{e}}ne Grosdidier and
Olga Valverde and
Marta Torrens and
{\`{A}}lex Bravo and
Janet Pi{\~{n}}ero Gonz{\'{a}}lez and
Ferran Sanz and
Laura In{\'{e}}s Furlong},
title = {PsyGeNET: a knowledge platform on psychiatric disorders and their
genes},
journal = {Bioinform.},
volume = {31},
number = {18},
pages = {3075--3077},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv301},
doi = {10.1093/BIOINFORMATICS/BTV301},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Gutierrez-Sacristan15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HaBD15,
author = {Min Jin Ha and
Veerabhadran Baladandayuthapani and
Kim{-}Anh Do},
title = {{DINGO:} differential network analysis in genomics},
journal = {Bioinform.},
volume = {31},
number = {21},
pages = {3413--3420},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv406},
doi = {10.1093/BIOINFORMATICS/BTV406},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HaBD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HaaseRSF15,
author = {Kerstin Haase and
Silke Raffegerst and
Dolores J. Schendel and
Dmitrij Frishman},
title = {Expitope: a web server for epitope expression},
journal = {Bioinform.},
volume = {31},
number = {11},
pages = {1854--1856},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv068},
doi = {10.1093/BIOINFORMATICS/BTV068},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HaaseRSF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HaeusslerRHCZKC15,
author = {Maximilian Haeussler and
Brian J. Raney and
Angie S. Hinrichs and
Hiram Clawson and
Ann S. Zweig and
Donna Karolchik and
Jonathan Casper and
Matthew L. Speir and
David Haussler and
W. James Kent},
title = {Navigating protected genomics data with {UCSC} Genome Browser in a
Box},
journal = {Bioinform.},
volume = {31},
number = {5},
pages = {764--766},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu712},
doi = {10.1093/BIOINFORMATICS/BTU712},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HaeusslerRHCZKC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HafemeisterRBMNRBT15,
author = {Christoph Hafemeister and
Roberto Romero and
Erhan Bilal and
Pablo Meyer and
Raquel Norel and
Kahn Rhrissorrakrai and
Richard Bonneau and
Adi L. Tarca},
title = {Inter-species pathway perturbation prediction via data-driven detection
of functional homology},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {501--508},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu570},
doi = {10.1093/BIOINFORMATICS/BTU570},
timestamp = {Fri, 01 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HafemeisterRBMNRBT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HaghverdiBT15,
author = {Laleh Haghverdi and
Florian Buettner and
Fabian J. Theis},
title = {Diffusion maps for high-dimensional single-cell analysis of differentiation
data},
journal = {Bioinform.},
volume = {31},
number = {18},
pages = {2989--2998},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv325},
doi = {10.1093/BIOINFORMATICS/BTV325},
timestamp = {Thu, 17 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HaghverdiBT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HakkinenR15,
author = {Antti H{\"{a}}kkinen and
Andre S. Ribeiro},
title = {Estimation of GFP-tagged {RNA} numbers from temporal fluorescence
intensity data},
journal = {Bioinform.},
volume = {31},
number = {1},
pages = {69--75},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu592},
doi = {10.1093/BIOINFORMATICS/BTU592},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HakkinenR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HalehalliN15,
author = {Rachita Ramachandra Halehalli and
Hampapathalu Adimurthy Nagarajaram},
title = {Molecular principles of human virus protein-protein interactions},
journal = {Bioinform.},
volume = {31},
number = {7},
pages = {1025--1033},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu763},
doi = {10.1093/BIOINFORMATICS/BTU763},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HalehalliN15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HamadaOFA15,
author = {Michiaki Hamada and
Yukiteru Ono and
Ryohei Fujimaki and
Kiyoshi Asai},
title = {Learning chromatin states with factorized information criteria},
journal = {Bioinform.},
volume = {31},
number = {15},
pages = {2426--2433},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv163},
doi = {10.1093/BIOINFORMATICS/BTV163},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HamadaOFA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HampR15,
author = {Tobias Hamp and
Burkhard Rost},
title = {More challenges for machine-learning protein interactions},
journal = {Bioinform.},
volume = {31},
number = {10},
pages = {1521--1525},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu857},
doi = {10.1093/BIOINFORMATICS/BTU857},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HampR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HampR15a,
author = {Tobias Hamp and
Burkhard Rost},
title = {Evolutionary profiles improve protein-protein interaction prediction
from sequence},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {1945--1950},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv077},
doi = {10.1093/BIOINFORMATICS/BTV077},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HampR15a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HanSN15,
author = {Eunjung Han and
Janet S. Sinsheimer and
John Novembre},
title = {Fast and accurate site frequency spectrum estimation from low coverage
sequence data},
journal = {Bioinform.},
volume = {31},
number = {5},
pages = {720--727},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu725},
doi = {10.1093/BIOINFORMATICS/BTU725},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HanSN15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HanWZW15,
author = {Bo W. Han and
Wei Wang and
Phillip D. Zamore and
Zhiping Weng},
title = {piPipes: a set of pipelines for piRNA and transposon analysis via
small RNA-seq, RNA-seq, degradome- and CAGE-seq, ChIP-seq and genomic
{DNA} sequencing},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {593--595},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu647},
doi = {10.1093/BIOINFORMATICS/BTU647},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HanWZW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HandfieldSCM15,
author = {Louis{-}Fran{\c{c}}ois Handfield and
Bob Strome and
Yolanda T. Chong and
Alan M. Moses},
title = {Local statistics allow quantification of cell-to-cell variability
from high-throughput microscope images},
journal = {Bioinform.},
volume = {31},
number = {6},
pages = {940--947},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu759},
doi = {10.1093/BIOINFORMATICS/BTU759},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HandfieldSCM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HarnPSJ15,
author = {Yeu{-}Chern Harn and
M. J. Powers and
Elizabeth A. Shank and
Vladimir Jojic},
title = {Deconvolving molecular signatures of interactions between microbial
colonies},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {142--150},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv251},
doi = {10.1093/BIOINFORMATICS/BTV251},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HarnPSJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HarrisCCGHL15,
author = {Nomi L. Harris and
Peter J. A. Cock and
Brad A. Chapman and
Jeremy Goecks and
Hans{-}Rudolf Hotz and
Hilmar Lapp},
title = {The Bioinformatics Open Source Conference {(BOSC)} 2013},
journal = {Bioinform.},
volume = {31},
number = {2},
pages = {299--300},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu413},
doi = {10.1093/BIOINFORMATICS/BTU413},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HarrisCCGHL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HartRHGWF15,
author = {Reece K. Hart and
Rudolph Rico and
Emily Hare and
John Garcia and
Jody Westbrook and
Vincent A. Fusaro},
title = {A Python package for parsing, validating, mapping and formatting sequence
variants using {HGVS} nomenclature},
journal = {Bioinform.},
volume = {31},
number = {2},
pages = {268--270},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu630},
doi = {10.1093/BIOINFORMATICS/BTU630},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HartRHGWF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HarveyMDWLP15,
author = {Chris T. Harvey and
Gregory A. Moyerbrailean and
Gordon O. Davis and
Xiaoquan Wen and
Francesca Luca and
Roger Pique{-}Regi},
title = {QuASAR: quantitative allele-specific analysis of reads},
journal = {Bioinform.},
volume = {31},
number = {8},
pages = {1235--1242},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu802},
doi = {10.1093/BIOINFORMATICS/BTU802},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HarveyMDWLP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HauboldKP15,
author = {Bernhard Haubold and
Fabian Kl{\"{o}}tzl and
Peter Pfaffelhuber},
title = {andi: Fast and accurate estimation of evolutionary distances between
closely related genomes},
journal = {Bioinform.},
volume = {31},
number = {8},
pages = {1169--1175},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu815},
doi = {10.1093/BIOINFORMATICS/BTU815},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HauboldKP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HayerPLHG15,
author = {Katharina E. Hayer and
Angel D. Pizarro and
Nicholas F. Lahens and
John B. Hogenesch and
Gregory R. Grant},
title = {Benchmark analysis of algorithms for determining and quantifying full-length
mRNA splice forms from RNA-seq data},
journal = {Bioinform.},
volume = {31},
number = {24},
pages = {3938--3945},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv488},
doi = {10.1093/BIOINFORMATICS/BTV488},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HayerPLHG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeLTN15,
author = {Wei He and
Zhi Liang and
Maikun Teng and
Liwen Niu},
title = {mFASD: a structure-based algorithm for discriminating different types
of metal-binding sites},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {1938--1944},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv044},
doi = {10.1093/BIOINFORMATICS/BTV044},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HeLTN15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeWAT15,
author = {Liye He and
Krister Wennerberg and
Tero Aittokallio and
Jing Tang},
title = {{TIMMA-R:} an {R} package for predicting synergistic multi-targeted
drug combinations in cancer cell lines or patient-derived samples},
journal = {Bioinform.},
volume = {31},
number = {11},
pages = {1866--1868},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv067},
doi = {10.1093/BIOINFORMATICS/BTV067},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HeWAT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeZF15,
author = {Yuting He and
Fan Zhang and
Patrick Flaherty},
title = {{RVD2:} an ultra-sensitive variant detection model for low-depth heterogeneous
next-generation sequencing data},
journal = {Bioinform.},
volume = {31},
number = {17},
pages = {2785--2793},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv275},
doi = {10.1093/BIOINFORMATICS/BTV275},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HeZF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeZLZ15,
author = {Sha He and
Hai Zhang and
Haihua Liu and
Hao Zhu},
title = {LongTarget: a tool to predict lncRNA DNA-binding motifs and binding
sites via Hoogsteen base-pairing analysis},
journal = {Bioinform.},
volume = {31},
number = {2},
pages = {178--186},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu643},
doi = {10.1093/BIOINFORMATICS/BTU643},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HeZLZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeZW15,
author = {Chao He and
Michael Q. Zhang and
Xiaowo Wang},
title = {{MICC:} an {R} package for identifying chromatin interactions from
ChIA-PET data},
journal = {Bioinform.},
volume = {31},
number = {23},
pages = {3832--3834},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv445},
doi = {10.1093/BIOINFORMATICS/BTV445},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HeZW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HebbringRYMJL15,
author = {Scott J. Hebbring and
Majid Rastegar{-}Mojarad and
Zhan Ye and
John Mayer and
Crystal Jacobson and
Simon M. Lin},
title = {Application of clinical text data for phenome-wide association studies
(PheWASs)},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {1981--1987},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv076},
doi = {10.1093/BIOINFORMATICS/BTV076},
timestamp = {Thu, 25 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HebbringRYMJL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeinonenGMBMTBZ15,
author = {Markus Heinonen and
Olivier Guipaud and
Fabien Milliat and
Val{\'{e}}rie Buard and
B{\'{e}}atrice Micheau and
Georges Tarlet and
Marc Benderitter and
Farida Zehraoui and
Florence d'Alch{\'{e}}{-}Buc},
title = {Detecting time periods of differential gene expression using Gaussian
processes: an application to endothelial cells exposed to radiotherapy
dose fraction},
journal = {Bioinform.},
volume = {31},
number = {5},
pages = {728--735},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu699},
doi = {10.1093/BIOINFORMATICS/BTU699},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HeinonenGMBMTBZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HelfrichAPSGWKN15,
author = {Stefan Helfrich and
Charaf E. Azzouzi and
Christopher Probst and
Johannes Seiffarth and
Alexander Gr{\"{u}}nberger and
Wolfgang Wiechert and
Dietrich Kohlheyer and
Katharina N{\"{o}}h},
title = {Vizardous: interactive analysis of microbial populations with single
cell resolution},
journal = {Bioinform.},
volume = {31},
number = {23},
pages = {3875--3877},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv468},
doi = {10.1093/BIOINFORMATICS/BTV468},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HelfrichAPSGWKN15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HendrickxACCEEG15,
author = {Diana M. Hendrickx and
Hugo J. W. L. Aerts and
Florian Caiment and
Dominic Clark and
Timothy M. D. Ebbels and
Chris T. A. Evelo and
Hans Gmuender and
Dennie G. A. J. Hebels and
Ralf Herwig and
J{\"{u}}rgen Hescheler and
Danyel G. J. Jennen and
Marlon J. A. Jetten and
Stathis Kanterakis and
Hector C. Keun and
Vera Matser and
John P. Overington and
Ekaterina Pilicheva and
Ugis Sarkans and
Marcelo P. Segura{-}Lepe and
Isaia Sotiriadou and
Timo Wittenberger and
Clemens Wittwehr and
Antonella Zanzi and
Jos C. S. Kleinjans},
title = {diXa: a data infrastructure for chemical safety assessment},
journal = {Bioinform.},
volume = {31},
number = {9},
pages = {1505--1507},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu827},
doi = {10.1093/BIOINFORMATICS/BTU827},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HendrickxACCEEG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HendrickxJBCKK15,
author = {Diana M. Hendrickx and
Danyel G. J. Jennen and
Jacob J. Bried{\'{e}} and
Rachel Cavill and
Theo M. de Kok and
Jos C. S. Kleinjans},
title = {Pattern recognition methods to relate time profiles of gene expression
with phenotypic data: a comparative study},
journal = {Bioinform.},
volume = {31},
number = {13},
pages = {2115--2122},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv108},
doi = {10.1093/BIOINFORMATICS/BTV108},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HendrickxJBCKK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HenriquesRSB15,
author = {David Henriques and
Miguel Rocha and
Julio Saez{-}Rodriguez and
Julio R. Banga},
title = {Reverse engineering of logic-based differential equation models using
a mixed-integer dynamic optimization approach},
journal = {Bioinform.},
volume = {31},
number = {18},
pages = {2999--3007},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv314},
doi = {10.1093/BIOINFORMATICS/BTV314},
timestamp = {Wed, 12 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HenriquesRSB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HensmanPGHR15,
author = {James Hensman and
Panagiotis Papastamoulis and
Peter Glaus and
Antti Honkela and
Magnus Rattray},
title = {Fast and accurate approximate inference of transcript expression from
RNA-seq data},
journal = {Bioinform.},
volume = {31},
number = {24},
pages = {3881--3889},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv483},
doi = {10.1093/BIOINFORMATICS/BTV483},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HensmanPGHR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HildebrandtSFG0NRSSTLKH15,
author = {Anna Katharina Hildebrandt and
Daniel St{\"{o}}ckel and
Nina M. Fischer and
Luis de la Garza and
Jens Kr{\"{u}}ger and
Stefan Nickels and
Marc R{\"{o}}ttig and
Charlotta Sch{\"{a}}rfe and
Marcel Schumann and
Philipp Thiel and
Hans{-}Peter Lenhof and
Oliver Kohlbacher and
Andreas Hildebrandt},
title = {ballaxy: web services for structural bioinformatics},
journal = {Bioinform.},
volume = {31},
number = {1},
pages = {121--122},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu574},
doi = {10.1093/BIOINFORMATICS/BTU574},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HildebrandtSFG0NRSSTLKH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HirshPGFT15,
author = {Layla Hirsh and
Damiano Piovesan and
Manuel Giollo and
Carlo Ferrari and
Silvio C. E. Tosatto},
title = {The Victor {C++} library for protein representation and advanced manipulation},
journal = {Bioinform.},
volume = {31},
number = {7},
pages = {1138--1140},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu773},
doi = {10.1093/BIOINFORMATICS/BTU773},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HirshPGFT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HodgkinsFPGPSI15,
author = {Alex Hodgkins and
Anna Farne and
Sajith Perera and
Tiago Grego and
David J. Parry{-}Smith and
William C. Skarnes and
Vivek Iyer},
title = {{WGE:} a {CRISPR} database for genome engineering},
journal = {Bioinform.},
volume = {31},
number = {18},
pages = {3078--3080},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv308},
doi = {10.1093/BIOINFORMATICS/BTV308},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HodgkinsFPGPSI15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HoengPMJ15,
author = {Julia Hoeng and
Manuel C. Peitsch and
Pablo Meyer and
Igor Jurisica},
title = {Where are we at regarding species translation? {A} review of the sbv
{IMPROVER} challenge},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {451--452},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv065},
doi = {10.1093/BIOINFORMATICS/BTV065},
timestamp = {Fri, 01 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HoengPMJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HolfordK15,
author = {Matthew E. Holford and
Michael Krauthammer},
title = {Mutadelic: mutation analysis using description logic inferencing capabilities},
journal = {Bioinform.},
volume = {31},
number = {23},
pages = {3742--3747},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv467},
doi = {10.1093/BIOINFORMATICS/BTV467},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HolfordK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HoltgreweKR15,
author = {Manuel Holtgrewe and
L{\'{e}}on Kuchenbecker and
Knut Reinert},
title = {Methods for the detection and assembly of novel sequence in high-throughput
sequencing data},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {1904--1912},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv051},
doi = {10.1093/BIOINFORMATICS/BTV051},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HoltgreweKR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HoogstrateJM15,
author = {Youri Hoogstrate and
Guido Jenster and
Elena S. Martens{-}Uzunova},
title = {FlaiMapper: computational annotation of small ncRNA-derived fragments
using RNA-seq high-throughput data},
journal = {Bioinform.},
volume = {31},
number = {5},
pages = {665--673},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu696},
doi = {10.1093/BIOINFORMATICS/BTU696},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HoogstrateJM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HormozBBBMNRD15,
author = {Sahand Hormoz and
Gyan Bhanot and
Michael Biehl and
Erhan Bilal and
Pablo Meyer and
Raquel Norel and
Kahn Rhrissorrakrai and
Adel Dayarian},
title = {Inter-species inference of gene set enrichment in lung epithelial
cells from proteomic and large transcriptomic datasets},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {492--500},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu569},
doi = {10.1093/BIOINFORMATICS/BTU569},
timestamp = {Fri, 01 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HormozBBBMNRD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HormozdiariKYPE15,
author = {Farhad Hormozdiari and
Gleb Kichaev and
Wen{-}Yun Yang and
Bogdan Pasaniuc and
Eleazar Eskin},
title = {Identification of causal genes for complex traits},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {206--213},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv240},
doi = {10.1093/BIOINFORMATICS/BTV240},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HormozdiariKYPE15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HounietRTHXGKK15,
author = {Darren T. Houniet and
Thahira J. Rahman and
Saeed Al Turki and
Matthew E. Hurles and
Yaobo Xu and
Judith A. Goodship and
Bernard D. Keavney and
Mauro F. Santibanez{-}Koref},
title = {Using population data for assessing next-generation sequencing performance},
journal = {Bioinform.},
volume = {31},
number = {1},
pages = {56--61},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu606},
doi = {10.1093/BIOINFORMATICS/BTU606},
timestamp = {Tue, 17 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HounietRTHXGKK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuJGZLG15,
author = {Bo Hu and
Jinpu Jin and
Anyuan Guo and
He Zhang and
Jingchu Luo and
Ge Gao},
title = {{GSDS} 2.0: an upgraded gene feature visualization server},
journal = {Bioinform.},
volume = {31},
number = {8},
pages = {1296--1297},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu817},
doi = {10.1093/BIOINFORMATICS/BTU817},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuJGZLG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuR15,
author = {Jialu Hu and
Knut Reinert},
title = {LocalAli: an evolutionary-based local alignment approach to identify
functionally \emph{conserved} modules in multiple networks},
journal = {Bioinform.},
volume = {31},
number = {3},
pages = {363--372},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu652},
doi = {10.1093/BIOINFORMATICS/BTU652},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangG15,
author = {Yi{-}Fei Huang and
Geoffrey Brian Golding},
title = {FuncPatch: a web server for the fast Bayesian inference of conserved
functional patches in protein 3D structures},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {523--531},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu673},
doi = {10.1093/BIOINFORMATICS/BTU673},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuangG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangWSLLGHZ15,
author = {Wenkang Huang and
Guanqiao Wang and
Qiancheng Shen and
Xinyi Liu and
Shaoyong Lu and
Lv Geng and
Zhimin Huang and
Jian Zhang},
title = {ASBench: benchmarking sets for allosteric discovery},
journal = {Bioinform.},
volume = {31},
number = {15},
pages = {2598--2600},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv169},
doi = {10.1093/BIOINFORMATICS/BTV169},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuangWSLLGHZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HulovatyyCM15,
author = {Yuriy Hulovatyy and
Huili Chen and
Tijana Milenkovic},
title = {Exploring the structure and function of temporal networks with dynamic
graphlets},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {171--180},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv227},
doi = {10.1093/BIOINFORMATICS/BTV227},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HulovatyyCM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HungCBTP15,
author = {Le Viet Hung and
Silvia Caprari and
Massimiliano Bizai and
Daniele Toti and
Fabio Polticelli},
title = {{LIBRA:} LIgand Binding site Recognition Application},
journal = {Bioinform.},
volume = {31},
number = {24},
pages = {4020--4022},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv489},
doi = {10.1093/BIOINFORMATICS/BTV489},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HungCBTP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuntGOBFGNKKO15,
author = {Martin Hunt and
Astrid Gall and
Swee Hoe Ong and
Jacqui Brener and
Bridget Ferns and
Philip J. R. Goulder and
Eleni Nastouli and
Jacqueline A. Keane and
Paul Kellam and
Thomas D. Otto},
title = {{IVA:} accurate \emph{de novo} assembly of {RNA} virus genomes},
journal = {Bioinform.},
volume = {31},
number = {14},
pages = {2374--2376},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv120},
doi = {10.1093/BIOINFORMATICS/BTV120},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuntGOBFGNKKO15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HurleyCWBPC15,
author = {Daniel G. Hurley and
Joseph Cursons and
Yi Kan Wang and
David M. Budden and
Cristin G. Print and
Edmund J. Crampin},
title = {NAIL, a software toolset for inferring, analyzing and visualizing
regulatory networks},
journal = {Bioinform.},
volume = {31},
number = {2},
pages = {277--278},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu612},
doi = {10.1093/BIOINFORMATICS/BTU612},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HurleyCWBPC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HurleyCWBPC15a,
author = {Daniel G. Hurley and
Joseph Cursons and
Yi Kan Wang and
David M. Budden and
Cristin G. Print and
Edmund J. Crampin},
title = {NAIL, a software toolset for inferring, analyzing and visualizing
regulatory networks},
journal = {Bioinform.},
volume = {31},
number = {13},
pages = {2015--2240},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv095},
doi = {10.1093/BIOINFORMATICS/BTV095},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HurleyCWBPC15a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HussanHGGCWST15,
author = {Jagir R. Hussan and
Peter J. Hunter and
Patrick A. Gladding and
Neil L. Greenberg and
G. Richard Christie and
Alan Wu and
Hugh Sorby and
James D. Thomas},
title = {{ICMA:} an integrated cardiac modeling and analysis platform},
journal = {Bioinform.},
volume = {31},
number = {8},
pages = {1331--1333},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu809},
doi = {10.1093/BIOINFORMATICS/BTU809},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HussanHGGCWST15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Huynh-ThuS15,
author = {V{\^{a}}n Anh Huynh{-}Thu and
Guido Sanguinetti},
title = {Combining tree-based and dynamical systems for the inference of gene
regulatory networks},
journal = {Bioinform.},
volume = {31},
number = {10},
pages = {1614--1622},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu863},
doi = {10.1093/BIOINFORMATICS/BTU863},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Huynh-ThuS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HwangLVMKZGW15,
author = {Yih{-}Chii Hwang and
Chiao{-}Feng Lin and
Otto Valladares and
John Malamon and
Pavel P. Kuksa and
Qi Zheng and
Brian D. Gregory and
Li{-}San Wang},
title = {{HIPPIE:} a high-throughput identification pipeline for promoter interacting
enhancer elements},
journal = {Bioinform.},
volume = {31},
number = {8},
pages = {1290--1292},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu801},
doi = {10.1093/BIOINFORMATICS/BTU801},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HwangLVMKZGW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IbrahimLO15,
author = {Mahmoud M. Ibrahim and
Scott A. Lacadie and
Uwe Ohler},
title = {{JAMM:} a peak finder for joint analysis of {NGS} replicates},
journal = {Bioinform.},
volume = {31},
number = {1},
pages = {48--55},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu568},
doi = {10.1093/BIOINFORMATICS/BTU568},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/IbrahimLO15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IhmsF15,
author = {Elihu C. Ihms and
Mark P. Foster},
title = {{MESMER:} minimal ensemble solutions to multiple experimental restraints},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {1951--1958},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv079},
doi = {10.1093/BIOINFORMATICS/BTV079},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/IhmsF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IkebataY15,
author = {Hisaki Ikebata and
Ryo Yoshida},
title = {Repulsive parallel {MCMC} algorithm for discovering diverse motifs
from large sequence sets},
journal = {Bioinform.},
volume = {31},
number = {10},
pages = {1561--1568},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv017},
doi = {10.1093/BIOINFORMATICS/BTV017},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/IkebataY15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IsakovBGHCYBVS15,
author = {Ofer Isakov and
Antonio V. Border{\'{\i}}a and
David Golan and
Amir Hamenahem and
Gershon Celniker and
Liron Yoffe and
Herv{\'{e}} Blanc and
Marco Vignuzzi and
Noam Shomron},
title = {Deep sequencing analysis of viral infection and evolution allows rapid
and detailed characterization of viral mutant spectrum},
journal = {Bioinform.},
volume = {31},
number = {13},
pages = {2141--2150},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv101},
doi = {10.1093/BIOINFORMATICS/BTV101},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/IsakovBGHCYBVS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ItzelSMKMSBSBRWTMGT15,
author = {Timo Itzel and
Peter Scholz and
Thorsten Maass and
Markus Krupp and
Jens U. Marquardt and
Susanne Strand and
Diana Becker and
Frank Staib and
Harald Binder and
Stephanie Roessler and
Xin Wei Wang and
Snorri Thorgeirsson and
Martina M{\"{u}}ller and
Peter R. Galle and
Andreas Teufel},
title = {Translating bioinformatics in oncology: guilt-by-profiling analysis
and identification of {KIF18B} and {CDCA3} as novel driver genes in
carcinogenesis},
journal = {Bioinform.},
volume = {31},
number = {2},
pages = {216--224},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu586},
doi = {10.1093/BIOINFORMATICS/BTU586},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ItzelSMKMSBSBRWTMGT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IzidoroMP15,
author = {Sandro C. Izidoro and
Raquel Cardoso de Melo Minardi and
Gisele L. Pappa},
title = {{GASS:} identifying enzyme active sites with genetic algorithms},
journal = {Bioinform.},
volume = {31},
number = {6},
pages = {864--870},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu746},
doi = {10.1093/BIOINFORMATICS/BTU746},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/IzidoroMP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JalaliKSBS15,
author = {Saakshi Jalali and
Shruti Kapoor and
Ambily Sivadas and
Deeksha Bhartiya and
Vinod Scaria},
title = {Computational approaches towards understanding human long non-coding
{RNA} biology},
journal = {Bioinform.},
volume = {31},
number = {14},
pages = {2241--2251},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv148},
doi = {10.1093/BIOINFORMATICS/BTV148},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JalaliKSBS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JaliliMMM15,
author = {Vahid Jalili and
Matteo Matteucci and
Marco Masseroli and
Marco J. Morelli},
title = {Using combined evidence from replicates to evaluate ChIP-seq peaks},
journal = {Bioinform.},
volume = {31},
number = {17},
pages = {2761--2769},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv293},
doi = {10.1093/BIOINFORMATICS/BTV293},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JaliliMMM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JammalamadakaSF15,
author = {Aruna Jammalamadaka and
Panuakdet Suwannatat and
Steven K. Fisher and
B. S. Manjunath and
Tobias H{\"{o}}llerer and
Gabriel Luna},
title = {Characterizing spatial distributions of astrocytes in the mammalian
retina},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {2024--2031},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv097},
doi = {10.1093/BIOINFORMATICS/BTV097},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JammalamadakaSF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JangCJPYLKKL15,
author = {Insu Jang and
Hyeshik Chang and
Yukyung Jun and
Seong{-}Jin Park and
Jin Ok Yang and
Byungwook Lee and
Wan Kyu Kim and
V. Narry Kim and
Sanghyuk Lee},
title = {miRseqViewer: multi-panel visualization of sequence, structure and
expression for analysis of microRNA sequencing data},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {596--598},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu676},
doi = {10.1093/BIOINFORMATICS/BTU676},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JangCJPYLKKL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JanssenG15,
author = {Stefan Janssen and
Robert Giegerich},
title = {The {RNA} shapes studio},
journal = {Bioinform.},
volume = {31},
number = {3},
pages = {423--425},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu649},
doi = {10.1093/BIOINFORMATICS/BTU649},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JanssenG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JayasundaraSMCT15,
author = {Duleepa Jayasundara and
Isaam Saeed and
Suhinthan Maheswararajah and
Bill C. Chang and
Sen{-}Lin Tang and
Saman K. Halgamuge},
title = {ViQuaS: an improved reconstruction pipeline for viral quasispecies
spectra generated by next-generation sequencing},
journal = {Bioinform.},
volume = {31},
number = {6},
pages = {886--896},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu754},
doi = {10.1093/BIOINFORMATICS/BTU754},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JayasundaraSMCT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JeongHPSKLY15,
author = {Euna Jeong and
Ningning He and
Hyerin Park and
Mee Song and
Nayoung Kim and
Seong Joon Lee and
Sukjoon Yoon},
title = {{MACE:} mutation-oriented profiling of chemical response and gene
expression in cancers},
journal = {Bioinform.},
volume = {31},
number = {9},
pages = {1508--1514},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu835},
doi = {10.1093/BIOINFORMATICS/BTU835},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JeongHPSKLY15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JeszenoiHBSH15,
author = {Norbert Jeszenoi and
Istv{\'{a}}n Horv{\'{a}}th and
M{\'{o}}nika B{\'{a}}lint and
David van der Spoel and
Csaba Het{\'{e}}nyi},
title = {Mobility-based prediction of hydration structures of protein surfaces},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {1959--1965},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv093},
doi = {10.1093/BIOINFORMATICS/BTV093},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JeszenoiHBSH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JiLLWFCW15,
author = {Guoli Ji and
Lei Li and
Qingshun Quinn Li and
Xiangdong Wu and
Jingyi Fu and
Gong Chen and
Xiaohui Wu},
title = {{PASPA:} a web server for mRNA poly(A) site predictions in plants
and algae},
journal = {Bioinform.},
volume = {31},
number = {10},
pages = {1671--1673},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv004},
doi = {10.1093/BIOINFORMATICS/BTV004},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JiLLWFCW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JinTPH15,
author = {Ying Jin and
Oliver H. Tam and
Eric Paniagua and
Molly Hammell},
title = {TEtranscripts: a package for including transposable elements in differential
expression analysis of RNA-seq datasets},
journal = {Bioinform.},
volume = {31},
number = {22},
pages = {3593--3599},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv422},
doi = {10.1093/BIOINFORMATICS/BTV422},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JinTPH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JingS15,
author = {Peng{-}Jie Jing and
Hong{-}Bin Shen},
title = {{MACOED:} a multi-objective ant colony optimization algorithm for
{SNP} epistasis detection in genome-wide association studies},
journal = {Bioinform.},
volume = {31},
number = {5},
pages = {634--641},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu702},
doi = {10.1093/BIOINFORMATICS/BTU702},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JingS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JohnsonKS15,
author = {Rob Johnson and
Paul D. W. Kirk and
Michael P. H. Stumpf},
title = {{SYSBIONS:} nested sampling for systems biology},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {604--605},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu675},
doi = {10.1093/BIOINFORMATICS/BTU675},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JohnsonKS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JolyM15,
author = {Valentin Joly and
Daniel P. Matton},
title = {KAPPA, a simple algorithm for discovery and clustering of proteins
defined by a key amino acid pattern: a case study of the cysteine-rich
proteins},
journal = {Bioinform.},
volume = {31},
number = {11},
pages = {1716--1723},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv047},
doi = {10.1093/BIOINFORMATICS/BTV047},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JolyM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JonesAO15,
author = {Graham Jones and
Zeynep Aydin and
Bengt Oxelman},
title = {{DISSECT:} an assignment-free Bayesian discovery method for species
delimitation under the multispecies coalescent},
journal = {Bioinform.},
volume = {31},
number = {7},
pages = {991--998},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu770},
doi = {10.1093/BIOINFORMATICS/BTU770},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JonesAO15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JonesC15,
author = {David T. Jones and
Domenico Cozzetto},
title = {{DISOPRED3:} precise disordered region predictions with annotated
protein-binding activity},
journal = {Bioinform.},
volume = {31},
number = {6},
pages = {857--863},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu744},
doi = {10.1093/BIOINFORMATICS/BTU744},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JonesC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JonesSKT15,
author = {David T. Jones and
Tanya Singh and
Tomasz Kosci{\'{o}}lek and
Stuart J. Tetchner},
title = {MetaPSICOV: combining coevolution methods for accurate prediction
of contacts and long range hydrogen bonding in proteins},
journal = {Bioinform.},
volume = {31},
number = {7},
pages = {999--1006},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu791},
doi = {10.1093/BIOINFORMATICS/BTU791},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JonesSKT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JuLRSZLDAWMC15,
author = {Zhenlin Ju and
Wenbin Liu and
Paul L. Roebuck and
Doris R. Siwak and
Nianxiang Zhang and
Yiling Lu and
Michael A. Davies and
Rehan Akbani and
John N. Weinstein and
Gordon B. Mills and
Kevin R. Coombes},
title = {Development of a robust classifier for quality control of reverse-phase
protein arrays},
journal = {Bioinform.},
volume = {31},
number = {6},
pages = {912--918},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu736},
doi = {10.1093/BIOINFORMATICS/BTU736},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JuLRSZLDAWMC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Juan-BlancoDA15,
author = {Teresa Juan{-}Blanco and
Miquel Duran{-}Frigola and
Patrick Aloy},
title = {IntSide: a web server for the chemical and biological examination
of drug side effects},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {612--613},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu688},
doi = {10.1093/BIOINFORMATICS/BTU688},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Juan-BlancoDA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JuanLWTZW15,
author = {Liran Juan and
Yongzhuang Liu and
Yongtian Wang and
Mingxiang Teng and
Tianyi Zang and
Yadong Wang},
title = {Family genome browser: visualizing genomes with pedigree information},
journal = {Bioinform.},
volume = {31},
number = {14},
pages = {2262--2268},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv151},
doi = {10.1093/BIOINFORMATICS/BTV151},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JuanLWTZW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JuanesMMPA15,
author = {Jos{\'{e}} M. Juanes and
Ana Miguel and
Lucas J. Morales and
Jos{\'{e}} E. P{\'{e}}rez{-}Ort{\'{\i}}n and
Vicente Arnau},
title = {A web application for the unspecific detection of differentially expressed
{DNA} regions in strand-specific expression data},
journal = {Bioinform.},
volume = {31},
number = {19},
pages = {3228--3230},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv343},
doi = {10.1093/BIOINFORMATICS/BTV343},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JuanesMMPA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JuliaTR15,
author = {Miguel Juli{\'{a}} and
Amalio Telenti and
Antonio Rausell},
title = {\emph{Sincell}: an R/Bioconductor package for statistical assessment
of cell-state hierarchies from single-cell RNA-seq},
journal = {Bioinform.},
volume = {31},
number = {20},
pages = {3380--3382},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv368},
doi = {10.1093/BIOINFORMATICS/BTV368},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JuliaTR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KaharaL15,
author = {Juhani K{\"{a}}h{\"{a}}r{\"{a}} and
Harri L{\"{a}}hdesm{\"{a}}ki},
title = {BinDNase: a discriminatory approach for transcription factor binding
prediction using DNase {I} hypersensitivity data},
journal = {Bioinform.},
volume = {31},
number = {17},
pages = {2852--2859},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv294},
doi = {10.1093/BIOINFORMATICS/BTV294},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KaharaL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Kahramanogullari15,
author = {Ozan Kahramanogullari and
Luca Cardelli},
title = {Gener: a minimal programming module for chemical controllers based
on {DNA} strand displacement},
journal = {Bioinform.},
volume = {31},
number = {17},
pages = {2906--2908},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv286},
doi = {10.1093/BIOINFORMATICS/BTV286},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Kahramanogullari15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KaisersSS15,
author = {Wolfgang Kaisers and
Heiner Schaal and
Holger Schwender},
title = {rbamtools: an {R} interface to samtools enabling fast accumulative
tabulation of splicing events over multiple RNA-seq samples},
journal = {Bioinform.},
volume = {31},
number = {10},
pages = {1663--1664},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu846},
doi = {10.1093/BIOINFORMATICS/BTU846},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KaisersSS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KangZCDLG15,
author = {Mingon Kang and
Chunling Zhang and
Hyung{-}Wook Chun and
Chris H. Q. Ding and
Chunyu Liu and
Jean Gao},
title = {eQTL epistasis: detecting epistatic effects and inferring hierarchical
relationships of genes in biological pathways},
journal = {Bioinform.},
volume = {31},
number = {5},
pages = {656--664},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu727},
doi = {10.1093/BIOINFORMATICS/BTU727},
timestamp = {Tue, 19 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KangZCDLG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KarpBKLLSHR15,
author = {Peter D. Karp and
Bonnie Berger and
Diane E. Kovats and
Thomas Lengauer and
Michal Linial and
Pardis Sabeti and
Winston Hide and
Burkhard Rost},
title = {Message from the {ISCB:} {ISCB} Ebola award for important future research
on the computational biology of Ebola virus},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {616--617},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv019},
doi = {10.1093/BIOINFORMATICS/BTV019},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KarpBKLLSHR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KatzWSSWTRMAB15,
author = {Yarden Katz and
Eric T. Wang and
Jacob Silterra and
Schraga Schwartz and
Bang Wong and
Helga Thorvaldsd{\'{o}}ttir and
James T. Robinson and
Jill P. Mesirov and
Edoardo M. Airoldi and
Christopher B. Burge},
title = {Quantitative visualization of alternative exon expression from RNA-seq
data},
journal = {Bioinform.},
volume = {31},
number = {14},
pages = {2400--2402},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv034},
doi = {10.1093/BIOINFORMATICS/BTV034},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KatzWSSWTRMAB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KeaneCS15,
author = {Peter Keane and
Rhodri Ceredig and
Cathal Seoighe},
title = {Promiscuous mRNA splicing under the control of {AIRE} in medullary
thymic epithelial cells},
journal = {Bioinform.},
volume = {31},
number = {7},
pages = {986--990},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu785},
doi = {10.1093/BIOINFORMATICS/BTU785},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KeaneCS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KelleyLLMMEL15,
author = {James J. Kelley and
Anatoliy Lane and
Xiaowei Li and
Brahmaji Mutthoju and
Shay Maor and
Dennis Egen and
Desmond S. Lun},
title = {{MOST:} a software environment for constraint-based metabolic modeling
and strain design},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {610--611},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu685},
doi = {10.1093/BIOINFORMATICS/BTU685},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KelleyLLMMEL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KellyGBSLCBL15,
author = {Brendan J. Kelly and
Robert Gross and
Kyle Bittinger and
Scott A. Sherrill{-}Mix and
James D. Lewis and
Ronald G. Collman and
Frederic D. Bushman and
Hongzhe Li},
title = {Power and sample-size estimation for microbiome studies using pairwise
distances and {PERMANOVA}},
journal = {Bioinform.},
volume = {31},
number = {15},
pages = {2461--2468},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv183},
doi = {10.1093/BIOINFORMATICS/BTV183},
timestamp = {Fri, 30 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KellyGBSLCBL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KerpedjievHH15,
author = {Peter Kerpedjiev and
Stefan Hammer and
Ivo L. Hofacker},
title = {Forna (force-directed {RNA):} Simple and effective online {RNA} secondary
structure diagrams},
journal = {Bioinform.},
volume = {31},
number = {20},
pages = {3377--3379},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv372},
doi = {10.1093/BIOINFORMATICS/BTV372},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KerpedjievHH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KhamisEGB15,
author = {Abdullah M. Khamis and
Magbubah Essack and
Xin Gao and
Vladimir B. Bajic},
title = {Distinct profiling of antimicrobial peptide families},
journal = {Bioinform.},
volume = {31},
number = {6},
pages = {849--856},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu738},
doi = {10.1093/BIOINFORMATICS/BTU738},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KhamisEGB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KhanWCK15,
author = {Ishita K. Khan and
Qing Wei and
Meghana Chitale and
Daisuke Kihara},
title = {{PFP/ESG:} automated protein function prediction servers enhanced
with Gene Ontology visualization tool},
journal = {Bioinform.},
volume = {31},
number = {2},
pages = {271--272},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu646},
doi = {10.1093/BIOINFORMATICS/BTU646},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KhanWCK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KhataeeL15,
author = {Hamidreza Khataee and
Alan Wee{-}Chung Liew},
title = {A stochastic automaton model for simulating kinesin processivity},
journal = {Bioinform.},
volume = {31},
number = {3},
pages = {390--396},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu664},
doi = {10.1093/BIOINFORMATICS/BTU664},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KhataeeL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KhisteI15,
author = {Nilesh Khiste and
Lucian Ilie},
title = {{E-MEM:} efficient computation of maximal exact matches for very large
genomes},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {509--514},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu687},
doi = {10.1093/BIOINFORMATICS/BTU687},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KhisteI15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KielaGSK15,
author = {Douwe Kiela and
Yufan Guo and
Ulla Stenius and
Anna Korhonen},
title = {Unsupervised discovery of information structure in biomedical documents},
journal = {Bioinform.},
volume = {31},
number = {7},
pages = {1084--1092},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu758},
doi = {10.1093/BIOINFORMATICS/BTU758},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KielaGSK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KierczakJFBTPSM15,
author = {Marcin Kierczak and
Jagoda Jablonska and
Simon K. G. Forsberg and
Matteo Bianchi and
Katarina Tengvall and
Mats E. Pettersson and
Veronika Scholz and
Jennifer R. S. Meadows and
Patric Jern and
{\"{O}}rjan Carlborg and
Kerstin Lindblad{-}Toh},
title = {cgmisc: enhanced genome-wide association analyses and visualization},
journal = {Bioinform.},
volume = {31},
number = {23},
pages = {3830--3831},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv426},
doi = {10.1093/BIOINFORMATICS/BTV426},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KierczakJFBTPSM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimCDP15,
author = {Yoo{-}Ah Kim and
Dong{-}Yeon Cho and
Phuong Dao and
Teresa M. Przytycka},
title = {MEMCover: integrated analysis of mutual exclusivity and functional
network reveals dysregulated pathways across multiple cancer types},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {284--292},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv247},
doi = {10.1093/BIOINFORMATICS/BTV247},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimCDP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimECRC15,
author = {Sung{-}Hwan Kim and
Onyeka Ezenwoye and
Hwan{-}Gue Cho and
Keith D. Robertson and
Jeong{-}Hyeon Choi},
title = {iTagPlot: an accurate computation and interactive drawing tool for
tag density plot},
journal = {Bioinform.},
volume = {31},
number = {14},
pages = {2384--2387},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv166},
doi = {10.1093/BIOINFORMATICS/BTV166},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimECRC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimFM15,
author = {Minji Kim and
Farzad Farnoud and
Olgica Milenkovic},
title = {HyDRA: gene prioritization via hybrid distance-score rank aggregation},
journal = {Bioinform.},
volume = {31},
number = {7},
pages = {1034--1043},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu766},
doi = {10.1093/BIOINFORMATICS/BTU766},
timestamp = {Tue, 29 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimFM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimJPP15,
author = {Hyunwoo Kim and
Hosung Jo and
Heejin Park and
Eunok Paek},
title = {\emph{HiXCorr}: a portable high-speed \emph{X}\({}_{\mbox{Corr}}\)
engine for high-resolution tandem mass spectrometry},
journal = {Bioinform.},
volume = {31},
number = {24},
pages = {4026--4028},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv490},
doi = {10.1093/BIOINFORMATICS/BTV490},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimJPP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimKNKL15,
author = {Junho Kim and
Sanghyeon Kim and
Hojung Nam and
Sangwoo Kim and
Doheon Lee},
title = {SoloDel: a probabilistic model for detecting low-frequent somatic
deletions from unmatched sequencing data},
journal = {Bioinform.},
volume = {31},
number = {19},
pages = {3105--3113},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv358},
doi = {10.1093/BIOINFORMATICS/BTV358},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimKNKL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimLKCYKGNHJKPK15,
author = {Dae{-}Kyum Kim and
Jaewook Lee and
Sae Rom Kim and
Dong{-}Sic Choi and
Yae Jin Yoon and
Ji Hyun Kim and
Gyeongyun Go and
Dinh Nhung and
Kahye Hong and
Su Chul Jang and
Si{-}Hyun Kim and
Kyong{-}Su Park and
Oh Youn Kim and
Hyun Taek Park and
Ji Hye Seo and
Elena Aikawa and
Monika Baj{-}Krzyworzeka and
Bas W. M. van Balkom and
Mattias Belting and
Lionel Blanc and
Vincent Bond and
Antonella Bongiovanni and
Francesc E. Borr{\`{a}}s and
Luc Bu{\'{e}}e and
Edit I. Buz{\'{a}}s and
Lesley Cheng and
Aled Clayton and
Emanuele Cocucci and
Charles S. Dela Cruz and
Dominic M. Desiderio and
Dolores Di Vizio and
Karin Ekstr{\"{o}}m and
Juan M. Falcon{-}Perez and
Chris Gardiner and
Bernd Giebel and
David W. Greening and
Julia Christina Gross and
Dwijendra Gupta and
An Hendrix and
Andrew F. Hill and
Michelle M. Hill and
Esther Nolte{-}'t Hoen and
Do Won Hwang and
Jameel Inal and
Medicharla V. Jagannadham and
Muthuvel Jayachandran and
Young{-}Koo Jee and
Malene J{\o}rgensen and
Kwang Pyo Kim and
Yoon{-}Keun Kim and
Thomas Kislinger and
Cecilia L{\"{a}}sser and
Dong Soo Lee and
Hakmo Lee and
Johannes van Leeuwen and
Thomas Lener and
Ming{-}Lin Liu and
Jan L{\"{o}}tvall and
Antonio Marcilla and
Suresh Mathivanan and
Andreas M{\"{o}}ller and
Jess Morhayim and
Fran{\c{c}}ois Mullier and
Irina Nazarenko and
Rienk Nieuwland and
Diana N. Nunes and
Ken C. Pang and
Jaesung Park and
Tushar Patel and
Gabriella Pocsfalvi and
Hernando del Portillo and
Ulrich Putz and
Marcel I. Ramirez and
Marcio L. Rodrigues and
Tae{-}Young Roh and
Felix Royo and
Susmita Sahoo and
Raymond Schiffelers and
Shivani Sharma and
Pia Siljander and
Richard J. Simpson and
Carolina Soekmadji and
Philip Stahl and
Allan Stensballe and
Ewa L. Stepien and
Hidetoshi Tahara and
Arne Trummer and
Hadi Valadi and
Laura J. Vella and
Sun Nyunt Wai and
Kenneth W. Witwer and
Mar{\'{\i}}a Y{\'{a}}{\~{n}}ez{-}M{\'{o}} and
Hyewon Youn and
Reinhard Zeidler and
Yong Song Gho},
title = {EVpedia: a community web portal for extracellular vesicles research},
journal = {Bioinform.},
volume = {31},
number = {6},
pages = {933--939},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu741},
doi = {10.1093/BIOINFORMATICS/BTU741},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimLKCYKGNHJKPK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimSY15,
author = {Sungchul Kim and
Lee Sael and
Hwanjo Yu},
title = {A mutation profile for top-\emph{k} patient search exploiting Gene-Ontology
and orthogonal non-negative matrix factorization},
journal = {Bioinform.},
volume = {31},
number = {22},
pages = {3653--3659},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv409},
doi = {10.1093/BIOINFORMATICS/BTV409},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimSY15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimuraK15,
author = {Kouichi Kimura and
Asako Koike},
title = {Ultrafast {SNP} analysis using the Burrows-Wheeler transform of short-read
data},
journal = {Bioinform.},
volume = {31},
number = {10},
pages = {1577--1583},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv024},
doi = {10.1093/BIOINFORMATICS/BTV024},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimuraK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KingsfordP15,
author = {Carl Kingsford and
Rob Patro},
title = {Reference-based compression of short-read sequences using path encoding},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {1920--1928},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv071},
doi = {10.1093/BIOINFORMATICS/BTV071},
timestamp = {Tue, 03 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KingsfordP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KirkwoodHOW15,
author = {Jobie Kirkwood and
David Hargreaves and
Simon O'Keefe and
Julie Wilson},
title = {Using isoelectric point to determine the pH for initial protein crystallization
trials},
journal = {Bioinform.},
volume = {31},
number = {9},
pages = {1444--1451},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv011},
doi = {10.1093/BIOINFORMATICS/BTV011},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KirkwoodHOW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KirmitzoglouP15,
author = {Ioannis Kirmitzoglou and
Vasilis J. Promponas},
title = {LCR-eXXXplorer: a web platform to search, visualize and share data
for low complexity regions in protein sequences},
journal = {Bioinform.},
volume = {31},
number = {13},
pages = {2208--2210},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv115},
doi = {10.1093/BIOINFORMATICS/BTV115},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KirmitzoglouP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KirsanovaBRS15,
author = {Catherine Kirsanova and
Alvis Brazma and
Gabriella Rustici and
Ugis Sarkans},
title = {Cellular phenotype database: a repository for systems microscopy data},
journal = {Bioinform.},
volume = {31},
number = {16},
pages = {2736--2740},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv199},
doi = {10.1093/BIOINFORMATICS/BTV199},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KirsanovaBRS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KlambauerWMUMH15,
author = {G{\"{u}}nter Klambauer and
Martin Wischenbart and
Michael Mahr and
Thomas Unterthiner and
Andreas Mayr and
Sepp Hochreiter},
title = {Rchemcpp: a web service for structural analoging in ChEMBL, Drugbank
and the Connectivity Map},
journal = {Bioinform.},
volume = {31},
number = {20},
pages = {3392--3394},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv373},
doi = {10.1093/BIOINFORMATICS/BTV373},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KlambauerWMUMH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KleftogiannisWA15,
author = {Dimitrios Kleftogiannis and
Limsoon Wong and
John A. C. Archer and
Panos Kalnis},
title = {Hi-Jack: a novel computational framework for pathway-based inference
of host-pathogen interactions},
journal = {Bioinform.},
volume = {31},
number = {14},
pages = {2332--2339},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv138},
doi = {10.1093/BIOINFORMATICS/BTV138},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KleftogiannisWA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KleinPAGFH15,
author = {Felix A. Klein and
Tibor Pakozdi and
Simon Anders and
Yad Ghavi{-}Helm and
Eileen E. M. Furlong and
Wolfgang Huber},
title = {FourCSeq: analysis of 4C sequencing data},
journal = {Bioinform.},
volume = {31},
number = {19},
pages = {3085--3091},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv335},
doi = {10.1093/BIOINFORMATICS/BTV335},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KleinPAGFH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KleinkaufMB15,
author = {Robert Kleinkauf and
Martin Mann and
Rolf Backofen},
title = {antaRNA: ant colony-based {RNA} sequence design},
journal = {Bioinform.},
volume = {31},
number = {19},
pages = {3114--3121},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv319},
doi = {10.1093/BIOINFORMATICS/BTV319},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KleinkaufMB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KlukowskiWGBW15,
author = {Piotr Klukowski and
Michal J. Walczak and
Adam Gonczarek and
Julien Boudet and
Gerhard Wider},
title = {Computer vision-based automated peak picking applied to protein {NMR}
spectra},
journal = {Bioinform.},
volume = {31},
number = {18},
pages = {2981--2988},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv318},
doi = {10.1093/BIOINFORMATICS/BTV318},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KlukowskiWGBW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KnightH15,
author = {Christopher J. Knight and
Jochen S. Hub},
title = {MemGen: a general web server for the setup of lipid membrane simulation
systems},
journal = {Bioinform.},
volume = {31},
number = {17},
pages = {2897--2899},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv292},
doi = {10.1093/BIOINFORMATICS/BTV292},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KnightH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KonwarHBKWHMCH15,
author = {Kishori M. Konwar and
Niels W. Hanson and
Maya P. Bhatia and
Dongjae Kim and
Shang{-}Ju Wu and
Aria S. Hahn and
Connor Morgan{-}Lang and
Hiu Kan Cheung and
Steven J. Hallam},
title = {MetaPathways v2.5: quantitative functional, taxonomic and usability
improvements},
journal = {Bioinform.},
volume = {31},
number = {20},
pages = {3345--3347},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv361},
doi = {10.1093/BIOINFORMATICS/BTV361},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KonwarHBKWHMCH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KorneliussenM15,
author = {Thorfinn Sand Korneliussen and
Ida Moltke},
title = {NgsRelate: a software tool for estimating pairwise relatedness from
next-generation sequencing data},
journal = {Bioinform.},
volume = {31},
number = {24},
pages = {4009--4011},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv509},
doi = {10.1093/BIOINFORMATICS/BTV509},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KorneliussenM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KorthauerK15,
author = {Keegan D. Korthauer and
Christina Kendziorski},
title = {MADGiC: a model-based approach for identifying driver genes in cancer},
journal = {Bioinform.},
volume = {31},
number = {10},
pages = {1526--1535},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu858},
doi = {10.1093/BIOINFORMATICS/BTU858},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KorthauerK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KoskinenTNH15,
author = {Patrik Koskinen and
Petri T{\"{o}}r{\"{o}}nen and
Jussi Nokso{-}Koivisto and
Liisa Holm},
title = {{PANNZER:} high-throughput functional annotation of uncharacterized
proteins in an error-prone environment},
journal = {Bioinform.},
volume = {31},
number = {10},
pages = {1544--1552},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu851},
doi = {10.1093/BIOINFORMATICS/BTU851},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KoskinenTNH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KosugiHT15,
author = {Shunichi Kosugi and
Hideki Hirakawa and
Satoshi Tabata},
title = {GMcloser: closing gaps in assemblies accurately with a likelihood-based
selection of contig or long-read alignments},
journal = {Bioinform.},
volume = {31},
number = {23},
pages = {3733--3741},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv465},
doi = {10.1093/BIOINFORMATICS/BTV465},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KosugiHT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KozlovAS15,
author = {Alexey M. Kozlov and
Andre J. Aberer and
Alexandros Stamatakis},
title = {ExaML version 3: a tool for phylogenomic analyses on supercomputers},
journal = {Bioinform.},
volume = {31},
number = {15},
pages = {2577--2579},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv184},
doi = {10.1093/BIOINFORMATICS/BTV184},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KozlovAS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KrokhotinHD15,
author = {Andrey Krokhotin and
Kevin Houlihan and
Nikolay V. Dokholyan},
title = {iFoldRNA v2: folding {RNA} with constraints},
journal = {Bioinform.},
volume = {31},
number = {17},
pages = {2891--2893},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv221},
doi = {10.1093/BIOINFORMATICS/BTV221},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KrokhotinHD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KrugerGNO15,
author = {Felix A. Kr{\"{u}}ger and
Anna Gaulton and
Michal Nowotka and
John P. Overington},
title = {PPDMs - a resource for mapping small molecule bioactivities from ChEMBL
to Pfam-A protein domains},
journal = {Bioinform.},
volume = {31},
number = {5},
pages = {776--778},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu711},
doi = {10.1093/BIOINFORMATICS/BTU711},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KrugerGNO15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KuchenbeckerNHN15,
author = {L{\'{e}}on Kuchenbecker and
Mikalai Nienen and
Jochen Hecht and
Avidan U. Neumann and
Nina Babel and
Knut Reinert and
Peter N. Robinson},
title = {{IMSEQ} - a fast and error aware approach to immunogenetic sequence
analysis},
journal = {Bioinform.},
volume = {31},
number = {18},
pages = {2963--2971},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv309},
doi = {10.1093/BIOINFORMATICS/BTV309},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KuchenbeckerNHN15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KuksaMDG15,
author = {Pavel P. Kuksa and
Martin Renqiang Min and
Rishabh Dugar and
Mark Gerstein},
title = {High-order neural networks and kernel methods for peptide-MHC binding
prediction},
journal = {Bioinform.},
volume = {31},
number = {22},
pages = {3600--3607},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv371},
doi = {10.1093/BIOINFORMATICS/BTV371},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KuksaMDG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KumarG15,
author = {Rajendra Kumar and
Helmut Grubm{\"{u}}ller},
title = {do{\_}x3dna: a tool to analyze structural fluctuations of dsDNA or
dsRNA from molecular dynamics simulations},
journal = {Bioinform.},
volume = {31},
number = {15},
pages = {2583--2585},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv190},
doi = {10.1093/BIOINFORMATICS/BTV190},
timestamp = {Fri, 28 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KumarG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KumarSSGB15,
author = {Runjun D. Kumar and
Adam C. Searleman and
S. Joshua Swamidass and
Obi L. Griffith and
Ron Bose},
title = {Statistically identifying tumor suppressors and oncogenes from pan-cancer
genome-sequencing data},
journal = {Bioinform.},
volume = {31},
number = {22},
pages = {3561--3568},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv430},
doi = {10.1093/BIOINFORMATICS/BTV430},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KumarSSGB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KurczyIJUHFHARM15,
author = {Michael E. Kurczy and
Julijana Ivanisevic and
Caroline H. Johnson and
Winnie Uritboonthai and
Linh Hoang and
Mingliang Fang and
Matthew Hicks and
Anthony Aldebot and
Duane Rinehart and
Lisa J. Mellander and
Ralf Tautenhahn and
Gary J. Patti and
Mary E. Spilker and
H. Paul Benton and
Gary Siuzdak},
title = {Determining conserved metabolic biomarkers from a million database
queries},
journal = {Bioinform.},
volume = {31},
number = {23},
pages = {3721--3724},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv475},
doi = {10.1093/BIOINFORMATICS/BTV475},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KurczyIJUHFHARM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KuzniarDNPL15,
author = {Arnold Kuzniar and
Somdutta Dhir and
Harm Nijveen and
S{\'{a}}ndor Pongor and
Jack A. M. Leunissen},
title = {Multi-netclust: an efficient tool for finding connected clusters in
multi-parametric networks},
journal = {Bioinform.},
volume = {31},
number = {19},
pages = {3240},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv479},
doi = {10.1093/BIOINFORMATICS/BTV479},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KuzniarDNPL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KyodaTHO15,
author = {Koji Kyoda and
Yukako Tohsato and
Kenneth H. L. Ho and
Shuichi Onami},
title = {Biological Dynamics Markup Language {(BDML):} an open format for representing
quantitative biological dynamics data},
journal = {Bioinform.},
volume = {31},
number = {7},
pages = {1044--1052},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu767},
doi = {10.1093/BIOINFORMATICS/BTU767},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KyodaTHO15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LaFaveVB15,
author = {Matthew C. LaFave and
Gaurav K. Varshney and
Shawn M. Burgess},
title = {GeIST: a pipeline for mapping integrated {DNA} elements},
journal = {Bioinform.},
volume = {31},
number = {19},
pages = {3219--3221},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv350},
doi = {10.1093/BIOINFORMATICS/BTV350},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LaFaveVB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LairdLB15,
author = {Matthew R. Laird and
Morgan G. I. Langille and
Fiona S. L. Brinkman},
title = {GenomeD3Plot: a library for rich, interactive visualizations of genomic
data in web applications},
journal = {Bioinform.},
volume = {31},
number = {20},
pages = {3348--3349},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv376},
doi = {10.1093/BIOINFORMATICS/BTV376},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LairdLB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LajugieFB15,
author = {Julien Lajugie and
Nicolas Fourel and
Eric E. Bouhassira},
title = {GenPlay Multi-Genome, a tool to compare and analyze multiple human
genomes in a graphical interface},
journal = {Bioinform.},
volume = {31},
number = {1},
pages = {109--111},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu588},
doi = {10.1093/BIOINFORMATICS/BTU588},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LajugieFB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LamLKT15,
author = {Ka{-}Kit Lam and
Kurt LaButti and
Asif Khalak and
David N. C. Tse},
title = {FinisherSC: a repeat-aware tool for upgrading \emph{de novo} assembly
using long reads},
journal = {Bioinform.},
volume = {31},
number = {19},
pages = {3207--3209},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv280},
doi = {10.1093/BIOINFORMATICS/BTV280},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LamLKT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LanPKMS15,
author = {Shiwei Lan and
Julia A. Palacios and
Michael D. Karcher and
Vladimir N. Minin and
Babak Shahbaba},
title = {An efficient Bayesian inference framework for coalescent-based nonparametric
phylodynamics},
journal = {Bioinform.},
volume = {31},
number = {20},
pages = {3282--3289},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv378},
doi = {10.1093/BIOINFORMATICS/BTV378},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LanPKMS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LaneHOB15,
author = {Courtney E. Lane and
Daniel Hulgan and
Kelly O'Quinn and
Michael G. Benton},
title = {CEMAsuite: open source degenerate {PCR} primer design},
journal = {Bioinform.},
volume = {31},
number = {22},
pages = {3688--3690},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv420},
doi = {10.1093/BIOINFORMATICS/BTV420},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LaneHOB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LaurentCCDPDSB15,
author = {Benoist Laurent and
Matthieu Chavent and
Tristan Cragnolini and
Anna Caroline E. Dahl and
Samuela Pasquali and
Philippe Derreumaux and
Mark S. P. Sansom and
Marc Baaden},
title = {Epock: rapid analysis of protein pocket dynamics},
journal = {Bioinform.},
volume = {31},
number = {9},
pages = {1478--1480},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu822},
doi = {10.1093/BIOINFORMATICS/BTU822},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LaurentCCDPDSB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeBWVRFB15,
author = {Donghyung Lee and
T. Bernard Bigdeli and
Vernell S. Williamson and
Vladimir I. Vladimirov and
Brien P. Riley and
Ayman H. Fanous and
Silviu{-}Alin Bacanu},
title = {{DISTMIX:} direct imputation of summary statistics for unmeasured
SNPs from mixed ethnicity cohorts},
journal = {Bioinform.},
volume = {31},
number = {19},
pages = {3099--3104},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv348},
doi = {10.1093/BIOINFORMATICS/BTV348},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeBWVRFB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeJMPSLI15,
author = {Hui Sun Lee and
Sunhwan Jo and
Srayanta Mukherjee and
Sang{-}Jun Park and
Jeffrey Skolnick and
Jooyoung Lee and
Wonpil Im},
title = {GS-align for glycan structure alignment and similarity measurement},
journal = {Bioinform.},
volume = {31},
number = {16},
pages = {2653--2659},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv202},
doi = {10.1093/BIOINFORMATICS/BTV202},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeJMPSLI15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeKTLYD15,
author = {Seungmyung Lee and
Hanjoo Kim and
Siqi Tian and
Taehoon Lee and
Sungroh Yoon and
Rhiju Das},
title = {Automated band annotation for {RNA} structure probing experiments
with numerous capillary electrophoresis profiles},
journal = {Bioinform.},
volume = {31},
number = {17},
pages = {2808--2815},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv282},
doi = {10.1093/BIOINFORMATICS/BTV282},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeKTLYD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeTM15,
author = {Woonghee Lee and
Marco Tonelli and
John L. Markley},
title = {{NMRFAM-SPARKY:} enhanced software for biomolecular {NMR} spectroscopy},
journal = {Bioinform.},
volume = {31},
number = {8},
pages = {1325--1327},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu830},
doi = {10.1093/BIOINFORMATICS/BTU830},
timestamp = {Mon, 30 Oct 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeTM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeWBRFVB15,
author = {Donghyung Lee and
Vernell S. Williamson and
T. Bernard Bigdeli and
Brien P. Riley and
Ayman H. Fanous and
Vladimir I. Vladimirov and
Silviu{-}Alin Bacanu},
title = {{JEPEG:} a summary statistics based tool for gene-level joint testing
of functional variants},
journal = {Bioinform.},
volume = {31},
number = {8},
pages = {1176--1182},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu816},
doi = {10.1093/BIOINFORMATICS/BTU816},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeWBRFVB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeesHMFAKVVERO15,
author = {Jonathan G. Lees and
Jean{-}Karim H{\'{e}}rich{\'{e}} and
Ian Morilla and
Jos{\'{e}} Mar{\'{\i}}a Fern{\'{a}}ndez and
Priit Adler and
Martin Krallinger and
Jaak Vilo and
Alfonso Valencia and
Jan Ellenberg and
Juan A. G. Ranea and
Christine A. Orengo},
title = {{FUN-L:} gene prioritization for RNAi screens},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {2052--2053},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv073},
doi = {10.1093/BIOINFORMATICS/BTV073},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeesHMFAKVVERO15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LegendreBHN15,
author = {Rachel Legendre and
Agn{\`{e}}s Baudin{-}Baillieu and
Isabelle Hatin and
Olivier Namy},
title = {RiboTools: a Galaxy toolbox for qualitative ribosome profiling analysis},
journal = {Bioinform.},
volume = {31},
number = {15},
pages = {2586--2588},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv174},
doi = {10.1093/BIOINFORMATICS/BTV174},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LegendreBHN15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LekschasSSK15,
author = {Fritz Lekschas and
Harald Stachelscheid and
Stefanie Seltmann and
Andreas Kurtz},
title = {Semantic Body Browser: graphical exploration of an organism and spatially
resolved expression data visualization},
journal = {Bioinform.},
volume = {31},
number = {5},
pages = {794--796},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu707},
doi = {10.1093/BIOINFORMATICS/BTU707},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LekschasSSK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LengLMNDTTDSK15,
author = {Ning Leng and
Yuan Li and
Brian E. McIntosh and
Bao Kim Nguyen and
Bret Duffin and
Shulan Tian and
James A. Thomson and
Colin N. Dewey and
Ron M. Stewart and
Christina Kendziorski},
title = {EBSeq-HMM: a Bayesian approach for identifying gene-expression changes
in ordered RNA-seq experiments},
journal = {Bioinform.},
volume = {31},
number = {16},
pages = {2614--2622},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv193},
doi = {10.1093/BIOINFORMATICS/BTV193},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LengLMNDTTDSK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LhotaHHNX15,
author = {John Lhota and
Ruth Hauptman and
Thomas Hart and
Clara Ng and
Lei Xie},
title = {A new method to improve network topological similarity search: applied
to fold recognition},
journal = {Bioinform.},
volume = {31},
number = {13},
pages = {2106--2114},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv125},
doi = {10.1093/BIOINFORMATICS/BTV125},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LhotaHHNX15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Li15,
author = {Heng Li},
title = {{BFC:} correcting Illumina sequencing errors},
journal = {Bioinform.},
volume = {31},
number = {17},
pages = {2885--2887},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv290},
doi = {10.1093/BIOINFORMATICS/BTV290},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Li15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Li15a,
author = {Heng Li},
title = {FermiKit: assembly-based variant calling for Illumina resequencing
data},
journal = {Bioinform.},
volume = {31},
number = {22},
pages = {3694--3696},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv440},
doi = {10.1093/BIOINFORMATICS/BTV440},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Li15a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiCYZJPKJGHCJLXLL15,
author = {Liping Li and
Enguo Chen and
Chun Yang and
Jun Zhu and
Pushkala Jayaraman and
Jeff de Pons and
Catherine C. Kaczorowski and
Howard J. Jacob and
Andrew S. Greene and
Matthew R. Hodges and
Allen W. Cowley Jr. and
Mingyu Liang and
Haiming Xu and
Pengyuan Liu and
Yan Lu},
title = {Improved rat genome gene prediction by integration of ESTs with RNA-Seq
information},
journal = {Bioinform.},
volume = {31},
number = {1},
pages = {25--32},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu608},
doi = {10.1093/BIOINFORMATICS/BTU608},
timestamp = {Tue, 26 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiCYZJPKJGHCJLXLL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiFRXMGS15,
author = {Wenzhi Li and
Guoxing Fu and
Weinian Rao and
Wei Xu and
Li Ma and
Shiwen Guo and
Qing Song},
title = {GenomeLaser: fast and accurate haplotyping from pedigree genotypes},
journal = {Bioinform.},
volume = {31},
number = {24},
pages = {3984--3987},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv452},
doi = {10.1093/BIOINFORMATICS/BTV452},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiFRXMGS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiGLAZ15,
author = {Wenyuan Li and
Ke Gong and
Qingjiao Li and
Frank Alber and
Xianghong Jasmine Zhou},
title = {Hi-Corrector: a fast, scalable and memory-efficient package for normalizing
large-scale Hi-C data},
journal = {Bioinform.},
volume = {31},
number = {6},
pages = {960--962},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu747},
doi = {10.1093/BIOINFORMATICS/BTU747},
timestamp = {Fri, 19 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiGLAZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiHFWWRZGCZZLCL15,
author = {Peng Li and
Chao Huang and
Yingxue Fu and
Jinan Wang and
Ziyin Wu and
Jinlong Ru and
Chunli Zheng and
Zihu Guo and
Xuetong Chen and
Wei Zhou and
Wenjuan Zhang and
Yan Li and
Jianxin Chen and
Aiping Lu and
Yonghua Wang},
title = {Large-scale exploration and analysis of drug combinations},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {2007--2016},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv080},
doi = {10.1093/BIOINFORMATICS/BTV080},
timestamp = {Wed, 27 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiHFWWRZGCZZLCL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiLLSL15,
author = {Dinghua Li and
Chi{-}Man Liu and
Ruibang Luo and
Kunihiko Sadakane and
Tak Wah Lam},
title = {{MEGAHIT:} an ultra-fast single-node solution for large and complex
metagenomics assembly via succinct \emph{de Bruijn} graph},
journal = {Bioinform.},
volume = {31},
number = {10},
pages = {1674--1676},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv033},
doi = {10.1093/BIOINFORMATICS/BTV033},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiLLSL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiLWWZWS15,
author = {Fuyi Li and
Chen Li and
Mingjun Wang and
Geoffrey I. Webb and
Yang Zhang and
James C. Whisstock and
Jiangning Song},
title = {GlycoMine: a machine learning-based approach for predicting N-, {C-}
and O-linked glycosylation in the human proteome},
journal = {Bioinform.},
volume = {31},
number = {9},
pages = {1411--1419},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu852},
doi = {10.1093/BIOINFORMATICS/BTU852},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiLWWZWS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiWL15,
author = {Biao Li and
Gao T. Wang and
Suzanne M. Leal},
title = {Generation of sequence-based data for pedigree-segregating Mendelian
or Complex traits},
journal = {Bioinform.},
volume = {31},
number = {22},
pages = {3706--3708},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv412},
doi = {10.1093/BIOINFORMATICS/BTV412},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiWL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiX15,
author = {Yi Li and
Xiaohui Xie},
title = {Deconvolving tumor purity and ploidy by integrating copy number alterations
and loss of heterozygosity},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {618},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu683},
doi = {10.1093/BIOINFORMATICS/BTU683},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiX15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiZC15,
author = {Yan{-}Hui Li and
Gaigai Zhang and
Qinghua Cui},
title = {{PPUS:} a web server to predict PUS-specific pseudouridine sites},
journal = {Bioinform.},
volume = {31},
number = {20},
pages = {3362--3364},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv366},
doi = {10.1093/BIOINFORMATICS/BTV366},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiZC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiangLLZ15,
author = {Cheng Liang and
Yue Li and
Jiawei Luo and
Zhaolei Zhang},
title = {A novel motif-discovery algorithm to identify co-regulatory motifs
in large transcription factor and microRNA co-regulatory networks
in human},
journal = {Bioinform.},
volume = {31},
number = {14},
pages = {2348--2355},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv159},
doi = {10.1093/BIOINFORMATICS/BTV159},
timestamp = {Mon, 21 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiangLLZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LinardASMRBTPL15,
author = {Benjamin Linard and
Alexis Allot and
Raphael Schneider and
Can Morel and
Raymond Ripp and
Marc Bigler and
Julie Dawn Thompson and
Olivier Poch and
Odile Lecompte},
title = {OrthoInspector 2.0: Software and database updates},
journal = {Bioinform.},
volume = {31},
number = {3},
pages = {447--448},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu642},
doi = {10.1093/BIOINFORMATICS/BTU642},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LinardASMRBTPL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LindbergHQ15,
author = {Michael R. Lindberg and
Ira M. Hall and
Aaron R. Quinlan},
title = {Population-based structural variation discovery with Hydra-Multi},
journal = {Bioinform.},
volume = {31},
number = {8},
pages = {1286--1289},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu771},
doi = {10.1093/BIOINFORMATICS/BTU771},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LindbergHQ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LindenbaumR15,
author = {Pierre Lindenbaum and
Richard Redon},
title = {mod{\_}bio: Apache modules for Next-Generation sequencing data},
journal = {Bioinform.},
volume = {31},
number = {1},
pages = {112--113},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu547},
doi = {10.1093/BIOINFORMATICS/BTU547},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LindenbaumR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuCL15,
author = {Chengcheng Liu and
Ju Xin Chin and
Dong{-}Yup Lee},
title = {SynLinker: an integrated system for designing linkers and synthetic
fusion proteins},
journal = {Bioinform.},
volume = {31},
number = {22},
pages = {3700--3702},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv447},
doi = {10.1093/BIOINFORMATICS/BTV447},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuCL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuCW15,
author = {Bin Liu and
Junjie Chen and
Xiaolong Wang},
title = {Application of learning to rank to protein remote homology detection},
journal = {Bioinform.},
volume = {31},
number = {21},
pages = {3492--3498},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv413},
doi = {10.1093/BIOINFORMATICS/BTV413},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuCW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuGGWLWLLH15,
author = {Zhongyang Liu and
Feifei Guo and
Jiangyong Gu and
Yong Wang and
Yang Li and
Dan Wang and
Liang Lu and
Dong Li and
Fuchu He},
title = {Similarity-based prediction for Anatomical Therapeutic Chemical classification
of drugs by integrating multiple data sources},
journal = {Bioinform.},
volume = {31},
number = {11},
pages = {1788--1795},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv055},
doi = {10.1093/BIOINFORMATICS/BTV055},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuGGWLWLLH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuGPXWZXLJZ15,
author = {Xian Liu and
Yuan Gao and
Jianlong Peng and
Yuan Xu and
Yulan Wang and
Nannan Zhou and
Jing Xing and
Xiaomin Luo and
Hualiang Jiang and
Mingyue Zheng},
title = {TarPred: a web application for predicting therapeutic and side effect
targets of chemical compounds},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {2049--2051},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv099},
doi = {10.1093/BIOINFORMATICS/BTV099},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuGPXWZXLJZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuLFWC15,
author = {Bin Liu and
Fule Liu and
Longyun Fang and
Xiaolong Wang and
Kuo{-}Chen Chou},
title = {repDNA: a Python package to generate various modes of feature vectors
for {DNA} sequences by incorporating user-defined physicochemical
properties and sequence-order effects},
journal = {Bioinform.},
volume = {31},
number = {8},
pages = {1307--1309},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu820},
doi = {10.1093/BIOINFORMATICS/BTU820},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuLFWC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuLHLLZNLW15,
author = {Zhihai Liu and
Yan Li and
Li Han and
Jie Li and
Jie Liu and
Zhixiong Zhao and
Wei Nie and
Yuchen Liu and
Renxiao Wang},
title = {PDB-wide collection of binding data: current status of the PDBbind
database},
journal = {Bioinform.},
volume = {31},
number = {3},
pages = {405--412},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu626},
doi = {10.1093/BIOINFORMATICS/BTU626},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuLHLLZNLW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuMG15,
author = {Yang Liu and
Erica Manesso and
Rudiyanto Gunawan},
title = {{REDEMPTION:} reduced dimension ensemble modeling and parameter estimation},
journal = {Bioinform.},
volume = {31},
number = {20},
pages = {3387--3389},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv365},
doi = {10.1093/BIOINFORMATICS/BTV365},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuMG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuSBMP15,
author = {Zhenqiu Liu and
Fengzhu Sun and
Jonathan Braun and
Dermot P. B. McGovern and
Steven T. Piantadosi},
title = {Multilevel regularized regression for simultaneous taxa selection
and network construction with metagenomic count data},
journal = {Bioinform.},
volume = {31},
number = {7},
pages = {1067--1074},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu778},
doi = {10.1093/BIOINFORMATICS/BTU778},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuSBMP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuSGZZ15,
author = {Hui Liu and
Jianjiang Sun and
Jihong Guan and
Jie Zheng and
Shuigeng Zhou},
title = {Improving compound-protein interaction prediction by building up highly
credible negative samples},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {221--229},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv256},
doi = {10.1093/BIOINFORMATICS/BTV256},
timestamp = {Mon, 23 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuSGZZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuWDLWQ15,
author = {Honglei Liu and
Zheng Wei and
Antonia Dominguez and
Yanda Li and
Xiaowo Wang and
Lei S. Qi},
title = {{CRISPR-ERA:} a comprehensive design tool for CRISPR-mediated gene
editing, repression and activation},
journal = {Bioinform.},
volume = {31},
number = {22},
pages = {3676--3678},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv423},
doi = {10.1093/BIOINFORMATICS/BTV423},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuWDLWQ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuXMLNZLZZZXR15,
author = {Wenzhong Liu and
Yubin Xie and
Jiyong Ma and
Xiaotong Luo and
Peng Nie and
Zhixiang Zuo and
Urs Lahrmann and
Qi Zhao and
Yueyuan Zheng and
Yong Zhao and
Yu Xue and
Jian Ren},
title = {{IBS:} an illustrator for the presentation and visualization of biological
sequences},
journal = {Bioinform.},
volume = {31},
number = {20},
pages = {3359--3361},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv362},
doi = {10.1093/BIOINFORMATICS/BTV362},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuXMLNZLZZZXR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Llinares-LopezG15,
author = {Felipe Llinares{-}L{\'{o}}pez and
Dominik G. Grimm and
Dean A. Bodenham and
Udo Gieraths and
Mahito Sugiyama and
Beth Rowan and
Karsten M. Borgwardt},
title = {Genome-wide detection of intervals of genetic heterogeneity associated
with complex traits},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {240--249},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv263},
doi = {10.1093/BIOINFORMATICS/BTV263},
timestamp = {Wed, 17 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Llinares-LopezG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Loffler-WirthKB15,
author = {Henry L{\"{o}}ffler{-}Wirth and
Martin Kalcher and
Hans Binder},
title = {oposSOM: R-package for high-dimensional portraying of genome-wide
expression landscapes on bioconductor},
journal = {Bioinform.},
volume = {31},
number = {19},
pages = {3225--3227},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv342},
doi = {10.1093/BIOINFORMATICS/BTV342},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Loffler-WirthKB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LonardiMWACDC15,
author = {Stefano Lonardi and
Seyed Hamid Mirebrahim and
Steve Wanamaker and
Matthew Alpert and
Gianfranco Ciardo and
Denisa Duma and
Timothy J. Close},
title = {When less is more: 'slicing' sequencing data improves read decoding
accuracy and \emph{de novo} assembly quality},
journal = {Bioinform.},
volume = {31},
number = {18},
pages = {2972--2980},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv311},
doi = {10.1093/BIOINFORMATICS/BTV311},
timestamp = {Tue, 24 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LonardiMWACDC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LopezAGPMDMT15,
author = {Elias D. L{\'{o}}pez and
Juan Pablo Arcon and
Diego F. Gauto and
Ariel A. Petruk and
Carlos P. Modenutti and
Victoria G. Dumas and
Marcelo A. Marti and
Adrian Gustavo Turjanski},
title = {{WATCLUST:} a tool for improving the design of drugs based on protein-water
interactions},
journal = {Bioinform.},
volume = {31},
number = {22},
pages = {3697--3699},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv411},
doi = {10.1093/BIOINFORMATICS/BTV411},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LopezAGPMDMT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LuLDPLL15,
author = {Yao Lu and
Yulan Lu and
Jingyuan Deng and
Hai Peng and
Hui Lu and
Long Jason Lu},
title = {A novel essential domain perspective for exploring gene essentiality},
journal = {Bioinform.},
volume = {31},
number = {18},
pages = {2921--2929},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv312},
doi = {10.1093/BIOINFORMATICS/BTV312},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LuLDPLL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LuijkGSHZ15,
author = {Ren{\'{e}} Luijk and
Jelle J. Goeman and
P. Eline Slagboom and
Bastiaan T. Heijmans and
Erik W. van Zwet},
title = {An alternative approach to multiple testing for methylation {QTL}
mapping reduces the proportion of falsely identified CpGs},
journal = {Bioinform.},
volume = {31},
number = {3},
pages = {340--345},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu654},
doi = {10.1093/BIOINFORMATICS/BTU654},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LuijkGSHZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LuoWLZWLP15,
author = {Junwei Luo and
Jianxin Wang and
Weilong Li and
Zhen Zhang and
Fang{-}Xiang Wu and
Min Li and
Yi Pan},
title = {{EPGA2:} memory-efficient \emph{de novo} assembler},
journal = {Bioinform.},
volume = {31},
number = {24},
pages = {3988--3990},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv487},
doi = {10.1093/BIOINFORMATICS/BTV487},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LuoWLZWLP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LuoWZWLP15,
author = {Junwei Luo and
Jianxin Wang and
Zhen Zhang and
Fang{-}Xiang Wu and
Min Li and
Yi Pan},
title = {{EPGA:} \emph{de novo} assembly using the distributions of reads and
insert size},
journal = {Bioinform.},
volume = {31},
number = {6},
pages = {825--833},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu762},
doi = {10.1093/BIOINFORMATICS/BTU762},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LuoWZWLP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LvWMYWWCJLL15,
author = {Yingli Lv and
Shuyuan Wang and
Fanlin Meng and
Lei Yang and
Zhifeng Wang and
Jing Wang and
Xiaowen Chen and
Wei Jiang and
Yixue Li and
Xia Li},
title = {Identifying novel associations between small molecules and miRNAs
based on integrated molecular networks},
journal = {Bioinform.},
volume = {31},
number = {22},
pages = {3638--3644},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv417},
doi = {10.1093/BIOINFORMATICS/BTV417},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LvWMYWWCJLL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaJJ15,
author = {Shining Ma and
Tao Jiang and
Rui Jiang},
title = {Differential regulation enrichment analysis via the integration of
transcriptional regulatory network and gene expression data},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {563--571},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu672},
doi = {10.1093/BIOINFORMATICS/BTU672},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaJJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaWWX15,
author = {Jianzhu Ma and
Sheng Wang and
Zhiyong Wang and
Jinbo Xu},
title = {Protein contact prediction by integrating joint evolutionary coupling
analysis and supervised learning},
journal = {Bioinform.},
volume = {31},
number = {21},
pages = {3506--3513},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv472},
doi = {10.1093/BIOINFORMATICS/BTV472},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaWWX15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaatukGRBFSSPRS15,
author = {Noa Maatuk and
Yitav Glantz{-}Gashai and
Maya Rotman and
Meirav Baydany and
Gennadiy Fonar and
Amir Shechvitz and
Karin Shemer and
Aviva Peleg and
Eli Reuveni and
Abraham O. Samson},
title = {{PHI-DAC:} protein homology database through dihedral angle conservation},
journal = {Bioinform.},
volume = {31},
number = {2},
pages = {292--294},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu617},
doi = {10.1093/BIOINFORMATICS/BTU617},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaatukGRBFSSPRS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MachielaC15,
author = {Mitchell J. Machiela and
Stephen J. Chanock},
title = {LDlink: a web-based application for exploring population-specific
haplotype structure and linking correlated alleles of possible functional
variants},
journal = {Bioinform.},
volume = {31},
number = {21},
pages = {3555--3557},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv402},
doi = {10.1093/BIOINFORMATICS/BTV402},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MachielaC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MadeiraTMBSTCMB15,
author = {F{\'{a}}bio Madeira and
Michele Tinti and
Gavuthami Murugesan and
Emily Berrett and
Margaret Stafford and
Rachel Toth and
Christian Cole and
Carol MacKintosh and
Geoffrey J. Barton},
title = {14-3-3-Pred: improved methods to predict 14-3-3-binding phosphopeptides},
journal = {Bioinform.},
volume = {31},
number = {14},
pages = {2276--2283},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv133},
doi = {10.1093/BIOINFORMATICS/BTV133},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MadeiraTMBSTCMB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaeharaO15,
author = {Kazumitsu Maehara and
Yasuyuki Ohkawa},
title = {agplus: a rapid and flexible tool for aggregation plots},
journal = {Bioinform.},
volume = {31},
number = {18},
pages = {3046--3047},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv322},
doi = {10.1093/BIOINFORMATICS/BTV322},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaeharaO15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MagasinG15,
author = {Jonathan D. Magasin and
Dietlind L. Gerloff},
title = {Pooled assembly of marine metagenomic datasets: enriching annotation
through chimerism},
journal = {Bioinform.},
volume = {31},
number = {3},
pages = {311--317},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu546},
doi = {10.1093/BIOINFORMATICS/BTU546},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MagasinG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MahadevanKK15,
author = {Radhakrishnan Mahadevan and
Axel von Kamp and
Steffen Klamt},
title = {Genome-scale strain designs based on regulatory minimal cut sets},
journal = {Bioinform.},
volume = {31},
number = {17},
pages = {2844--2851},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv217},
doi = {10.1093/BIOINFORMATICS/BTV217},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MahadevanKK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MalekTCFGB15,
author = {Mehrnoush Malek and
Mohammad Jafar Taghiyar and
Lauren Chong and
Greg Finak and
Raphael Gottardo and
Ryan Remy Brinkman},
title = {flowDensity: reproducing manual gating of flow cytometry data by automated
density-based cell population identification},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {606--607},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu677},
doi = {10.1093/BIOINFORMATICS/BTU677},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MalekTCFGB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MalhisG15,
author = {Nawar Malhis and
J{\"{o}}rg Gsponer},
title = {Computational identification of MoRFs in protein sequences},
journal = {Bioinform.},
volume = {31},
number = {11},
pages = {1738--1744},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv060},
doi = {10.1093/BIOINFORMATICS/BTV060},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MalhisG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MalikicMDS15,
author = {Salem Malikic and
Andrew W. McPherson and
Nilgun Donmez and
Cenk S. Sahinalp},
title = {Clonality inference in multiple tumor samples using phylogeny},
journal = {Bioinform.},
volume = {31},
number = {9},
pages = {1349--1356},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv003},
doi = {10.1093/BIOINFORMATICS/BTV003},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MalikicMDS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Malod-DogninP15,
author = {No{\"{e}}l Malod{-}Dognin and
Natasa Przulj},
title = {{L-GRAAL:} Lagrangian graphlet-based network aligner},
journal = {Bioinform.},
volume = {31},
number = {13},
pages = {2182--2189},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv130},
doi = {10.1093/BIOINFORMATICS/BTV130},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Malod-DogninP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MalysaHORGW15,
author = {Greg Malysa and
Mikel Hernaez and
Idoia Ochoa and
Milind Rao and
Karthik Ganesan and
Tsachy Weissman},
title = {{QVZ:} lossy compression of quality values},
journal = {Bioinform.},
volume = {31},
number = {19},
pages = {3122--3129},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv330},
doi = {10.1093/BIOINFORMATICS/BTV330},
timestamp = {Thu, 10 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MalysaHORGW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MandricZ15,
author = {Igor Mandric and
Alex Zelikovsky},
title = {ScaffMatch: scaffolding algorithm based on maximum weight matching},
journal = {Bioinform.},
volume = {31},
number = {16},
pages = {2632--2638},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv211},
doi = {10.1093/BIOINFORMATICS/BTV211},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MandricZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ManorS15,
author = {Ohad Manor and
Eran Segal},
title = {GenoExp: a web tool for predicting gene expression levels from single
nucleotide polymorphisms},
journal = {Bioinform.},
volume = {31},
number = {11},
pages = {1848--1850},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv050},
doi = {10.1093/BIOINFORMATICS/BTV050},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ManorS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ManterB15,
author = {Daniel K. Manter and
Matthew G. Bakker},
title = {Estimating beta diversity for under-sampled communities using the
variably weighted Odum dissimilarity index and OTUshuff},
journal = {Bioinform.},
volume = {31},
number = {21},
pages = {3451--3459},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv394},
doi = {10.1093/BIOINFORMATICS/BTV394},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ManterB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaoAWWSYS15,
author = {Chunhong Mao and
David Abraham and
Alice R. Wattam and
Meredith J. C. Wilson and
Maulik Shukla and
Hyun Seung Yoo and
Bruno W. S. Sobral},
title = {Curation, integration and visualization of bacterial virulence factors
in {PATRIC}},
journal = {Bioinform.},
volume = {31},
number = {2},
pages = {252--258},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu631},
doi = {10.1093/BIOINFORMATICS/BTU631},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaoAWWSYS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaoKDHB15,
author = {Wenzhi Mao and
Cihan Kaya and
Anindita Dutta and
Amnon Horovitz and
Ivet Bahar},
title = {Comparative study of the effectiveness and limitations of current
methods for detecting sequence coevolution},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {1929--1937},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv103},
doi = {10.1093/BIOINFORMATICS/BTV103},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaoKDHB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaplesonDS15,
author = {Daniel Mapleson and
Nizar Drou and
David Swarbreck},
title = {{RAMPART:} a workflow management system for \emph{de novo} genome
assembly},
journal = {Bioinform.},
volume = {31},
number = {11},
pages = {1824--1826},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv056},
doi = {10.1093/BIOINFORMATICS/BTV056},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaplesonDS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MarchettiM15,
author = {Luca Marchetti and
Vincenzo Manca},
title = {MpTheory Java library: a multi-platform Java library for systems biology
based on the Metabolic {P} theory},
journal = {Bioinform.},
volume = {31},
number = {8},
pages = {1328--1330},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu814},
doi = {10.1093/BIOINFORMATICS/BTU814},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MarchettiM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MarciniukTN15,
author = {Kristen Marciniuk and
Brett Trost and
Scott Napper},
title = {EpIC: a rational pipeline for epitope immunogenicity characterization},
journal = {Bioinform.},
volume = {31},
number = {14},
pages = {2388--2390},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv136},
doi = {10.1093/BIOINFORMATICS/BTV136},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MarciniukTN15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Marcos-AlcaldeS15,
author = {I{\~{n}}igo Marcos{-}Alcalde and
Javier Setoain and
Jes{\'{u}}s I. Mendieta{-}Moreno and
Jes{\'{u}}s Mendieta and
Paulino G{\'{o}}mez{-}Puertas},
title = {{MEPSA:} minimum energy pathway analysis for energy landscapes},
journal = {Bioinform.},
volume = {31},
number = {23},
pages = {3853--3855},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv453},
doi = {10.1093/BIOINFORMATICS/BTV453},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Marcos-AlcaldeS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MarshallB15,
author = {Owen J. Marshall and
Andrea H. Brand},
title = {damidseq{\_}pipeline: an automated pipeline for processing DamID sequencing
datasets},
journal = {Bioinform.},
volume = {31},
number = {20},
pages = {3371--3373},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv386},
doi = {10.1093/BIOINFORMATICS/BTV386},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MarshallB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MartinyCCMNVVM15,
author = {Virginie Y. Martiny and
Pablo Carbonell and
Florent Chevillard and
Gautier Moroy and
Arnaud B. Nicot and
Philippe Vayer and
Bruno O. Villoutreix and
Maria A. Miteva},
title = {Integrated structure- and ligand-based \emph{in silico} approach to
predict inhibition of cytochrome {P450} 2D6},
journal = {Bioinform.},
volume = {31},
number = {24},
pages = {3930--3937},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv486},
doi = {10.1093/BIOINFORMATICS/BTV486},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MartinyCCMNVVM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MasseroliPVKJPM15,
author = {Marco Masseroli and
Pietro Pinoli and
Francesco Venco and
Abdulrahman Kaitoua and
Vahid Jalili and
Fernando Palluzzi and
Heiko M{\"{u}}ller and
Stefano Ceri},
title = {GenoMetric Query Language: a novel approach to large-scale genomic
data management},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {1881--1888},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv048},
doi = {10.1093/BIOINFORMATICS/BTV048},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MasseroliPVKJPM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MatlockHS15,
author = {Matthew K. Matlock and
Tyler B. Hughes and
Sanjay Joshua Swamidass},
title = {XenoSite server: a web-available site of metabolism prediction tool},
journal = {Bioinform.},
volume = {31},
number = {7},
pages = {1136--1137},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu761},
doi = {10.1093/BIOINFORMATICS/BTU761},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MatlockHS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MatosKK15,
author = {Marta R. A. Matos and
Bettina Knapp and
Lars Kaderali},
title = {lpNet: a linear programming approach to reconstruct signal transduction
networks},
journal = {Bioinform.},
volume = {31},
number = {19},
pages = {3231--3233},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv327},
doi = {10.1093/BIOINFORMATICS/BTV327},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MatosKK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MayoSS15,
author = {Tom R. Mayo and
Gabriele Beate Schweikert and
Guido Sanguinetti},
title = {M\({}^{\mbox{3}}\)D: a kernel-based test for spatially correlated
changes in methylation profiles},
journal = {Bioinform.},
volume = {31},
number = {6},
pages = {809--816},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu749},
doi = {10.1093/BIOINFORMATICS/BTU749},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MayoSS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MazzaferriRLC15,
author = {Javier Mazzaferri and
Joannie Roy and
Stephane Lefrancois and
Santiago Costantino},
title = {Adaptive settings for the nearest-neighbor particle tracking algorithm},
journal = {Bioinform.},
volume = {31},
number = {8},
pages = {1279--1285},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu793},
doi = {10.1093/BIOINFORMATICS/BTU793},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MazzaferriRLC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/McMurdieH15,
author = {Paul J. McMurdie and
Susan P. Holmes},
title = {Shiny-phyloseq: Web application for interactive microbiome analysis
with provenance tracking},
journal = {Bioinform.},
volume = {31},
number = {2},
pages = {282--283},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu616},
doi = {10.1093/BIOINFORMATICS/BTU616},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/McMurdieH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/McTavishHABCHRS15,
author = {Emily Jane McTavish and
Cody E. Hinchliff and
James F. Allman and
Joseph W. Brown and
Karen Cranston and
Mark T. Holder and
Jonathan Rees and
Stephen A. Smith},
title = {Phylesystem: a git-based data store for community-curated phylogenetic
estimates},
journal = {Bioinform.},
volume = {31},
number = {17},
pages = {2794--2800},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv276},
doi = {10.1093/BIOINFORMATICS/BTV276},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/McTavishHABCHRS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MegjhaniRMLMTCH15,
author = {Murad Megjhani and
Nicolas Rey{-}Villamizar and
Amine Merouane and
Yanbin Lu and
Amit Mukherjee and
Kristen Trett and
Peter H. J. Chong and
Carolyn Harris and
William Shain and
Badrinath Roysam},
title = {Population-scale three-dimensional reconstruction and quantitative
profiling of microglia arbors},
journal = {Bioinform.},
volume = {31},
number = {13},
pages = {2190--2198},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv109},
doi = {10.1093/BIOINFORMATICS/BTV109},
timestamp = {Mon, 16 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MegjhaniRMLMTCH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MeierS15,
author = {Armin Meier and
Johannes S{\"{o}}ding},
title = {Context similarity scoring improves protein sequence alignments in
the midnight zone},
journal = {Bioinform.},
volume = {31},
number = {5},
pages = {674--681},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu697},
doi = {10.1093/BIOINFORMATICS/BTU697},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MeierS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Meinicke15,
author = {Peter Meinicke},
title = {UProC: tools for ultra-fast protein domain classification},
journal = {Bioinform.},
volume = {31},
number = {9},
pages = {1382--1388},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu843},
doi = {10.1093/BIOINFORMATICS/BTU843},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Meinicke15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MerouaneRLLRLSC15,
author = {Amine Merouane and
Nicolas Rey{-}Villamizar and
Yanbin Lu and
Ivan Liadi and
Gabrielle Romain and
Jennifer Lu and
Harjeet Singh and
Laurence J. N. Cooper and
Navin Varadarajan and
Badrinath Roysam},
title = {Automated profiling of individual cell-cell interactions from high-throughput
time-lapse imaging microscopy in nanowell grids {(TIMING)}},
journal = {Bioinform.},
volume = {31},
number = {19},
pages = {3189--3197},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv355},
doi = {10.1093/BIOINFORMATICS/BTV355},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MerouaneRLLRLSC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MessihLT15,
author = {Mario Abdel Messih and
Rosalba Lepore and
Anna Tramontano},
title = {LoopIng: a template-based tool for predicting the structure of protein
loops},
journal = {Bioinform.},
volume = {31},
number = {23},
pages = {3767--3772},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv438},
doi = {10.1093/BIOINFORMATICS/BTV438},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MessihLT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MirarabW15,
author = {Siavash Mirarab and
Tandy J. Warnow},
title = {{ASTRAL-II:} coalescent-based species tree estimation with many hundreds
of taxa and thousands of genes},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {44--52},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv234},
doi = {10.1093/BIOINFORMATICS/BTV234},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MirarabW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MirebrahimCL15,
author = {Seyed Hamid Mirebrahim and
Timothy J. Close and
Stefano Lonardi},
title = {\emph{De novo} meta-assembly of ultra-deep sequencing data},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {9--16},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv226},
doi = {10.1093/BIOINFORMATICS/BTV226},
timestamp = {Tue, 24 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MirebrahimCL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MoalF15,
author = {Iain H. Moal and
Juan Fern{\'{a}}ndez{-}Recio},
title = {Comment on 'protein-protein binding affinity prediction from amino
acid sequence'},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {614--615},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu682},
doi = {10.1093/BIOINFORMATICS/BTU682},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MoalF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MoalJF15,
author = {Iain H. Moal and
Brian Jim{\'{e}}nez{-}Garc{\'{\i}}a and
Juan Fern{\'{a}}ndez{-}Recio},
title = {CCharPPI web server: computational characterization of protein-protein
interactions from structure},
journal = {Bioinform.},
volume = {31},
number = {1},
pages = {123--125},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu594},
doi = {10.1093/BIOINFORMATICS/BTU594},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MoalJF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MohiyuddinMLAGA15,
author = {Marghoob Mohiyuddin and
John C. Mu and
Jian Li and
Narges Bani Asadi and
Mark B. Gerstein and
Alexej Abyzov and
Wing H. Wong and
Hugo Y. K. Lam},
title = {MetaSV: an accurate and integrative structural-variant caller for
next generation sequencing},
journal = {Bioinform.},
volume = {31},
number = {16},
pages = {2741--2744},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv204},
doi = {10.1093/BIOINFORMATICS/BTV204},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MohiyuddinMLAGA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MoneyW15,
author = {Daniel Money and
Simon Whelan},
title = {GeLL: a generalized likelihood library for phylogenetic models},
journal = {Bioinform.},
volume = {31},
number = {14},
pages = {2391--2393},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv126},
doi = {10.1093/BIOINFORMATICS/BTV126},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MoneyW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MoniXL15,
author = {Mohammad Ali Moni and
Haoming Xu and
Pietro Li{\`{o}}},
title = {CytoCom: a Cytoscape app to visualize, query and analyse disease comorbidity
networks},
journal = {Bioinform.},
volume = {31},
number = {6},
pages = {969--971},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu731},
doi = {10.1093/BIOINFORMATICS/BTU731},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MoniXL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MorbeyECVAS15,
author = {Roger A. Morbey and
Alex J. Elliot and
Andre Charlett and
Neville Q. Verlander and
Nick Andrews and
Gillian E. Smith},
title = {The application of a novel 'rising activity, multi-level mixed effects,
indicator emphasis' {(RAMMIE)} method for syndromic surveillance in
England},
journal = {Bioinform.},
volume = {31},
number = {22},
pages = {3660--3665},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv418},
doi = {10.1093/BIOINFORMATICS/BTV418},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MorbeyECVAS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MoreauB15,
author = {Yves Moreau and
Niko Beerenwinkel},
title = {{ISMB/ECCB} 2015},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {1--2},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv303},
doi = {10.1093/BIOINFORMATICS/BTV303},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MoreauB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MorfopoulouP15,
author = {Sofia Morfopoulou and
Vincent Plagnol},
title = {Bayesian mixture analysis for metagenomic community profiling},
journal = {Bioinform.},
volume = {31},
number = {18},
pages = {2930--2938},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv317},
doi = {10.1093/BIOINFORMATICS/BTV317},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MorfopoulouP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MorimotoNYKAOT15,
author = {Kentaro Morimoto and
Takashi Nishikaze and
Akiyasu C. Yoshizawa and
Shigeki Kajihara and
Ken Aoshima and
Yoshiya Oda and
Koichi Tanaka},
title = {GlycanAnalysis Plug-in: a database search tool for \emph{N}-glycan
structures using mass spectrometry},
journal = {Bioinform.},
volume = {31},
number = {13},
pages = {2217--2219},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv110},
doi = {10.1093/BIOINFORMATICS/BTV110},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MorimotoNYKAOT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MorrisWYMF15,
author = {John H. Morris and
Allan Wu and
Roxanne A. Yamashita and
Aron Marchler{-}Bauer and
Thomas E. Ferrin},
title = {cddApp: a Cytoscape app for accessing the {NCBI} conserved domain
database},
journal = {Bioinform.},
volume = {31},
number = {1},
pages = {134--136},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu605},
doi = {10.1093/BIOINFORMATICS/BTU605},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MorrisWYMF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MortonWM15,
author = {Taj Morton and
Weng{-}Keen Wong and
Molly Megraw},
title = {{TIPR:} transcription initiation pattern recognition on a genome scale},
journal = {Bioinform.},
volume = {31},
number = {23},
pages = {3725--3732},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv464},
doi = {10.1093/BIOINFORMATICS/BTV464},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MortonWM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MpindiSDJSWAOK15,
author = {John{-}Patrick Mpindi and
Potdar Swapnil and
Dmitrii Bychkov and
Saarela Jani and
Khalid Saeed and
Krister Wennerberg and
Tero Aittokallio and
P{\"{a}}ivi {\"{O}}stling and
Olli{-}P. Kallioniemi},
title = {Impact of normalization methods on high-throughput screening data
with high hit rates and drug testing with dose-response data},
journal = {Bioinform.},
volume = {31},
number = {23},
pages = {3815--3821},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv455},
doi = {10.1093/BIOINFORMATICS/BTV455},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MpindiSDJSWAOK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MuMLAGAWL15,
author = {John C. Mu and
Marghoob Mohiyuddin and
Jian Li and
Narges Bani Asadi and
Mark B. Gerstein and
Alexej Abyzov and
Wing H. Wong and
Hugo Y. K. Lam},
title = {VarSim: a high-fidelity simulation and validation framework for high-throughput
genome sequencing with cancer applications},
journal = {Bioinform.},
volume = {31},
number = {9},
pages = {1469--1471},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu828},
doi = {10.1093/BIOINFORMATICS/BTU828},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MuMLAGAWL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MudvariMKSKEGH15,
author = {Prakriti Mudvari and
Mercedeh Movassagh and
Kamran Kowsari and
Ali Seyfi and
Maria Kokkinaki and
Nathan J. Edwards and
Nady Golestaneh and
Anelia Horvath},
title = {SNPlice: variants that modulate Intron retention from RNA-sequencing
data},
journal = {Bioinform.},
volume = {31},
number = {8},
pages = {1191--1198},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu804},
doi = {10.1093/BIOINFORMATICS/BTU804},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MudvariMKSKEGH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Mueller-Planitz15,
author = {Felix Mueller{-}Planitz},
title = {Crossfinder-assisted mapping of protein crosslinks formed by site-specifically
incorporated crosslinkers},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {2043--2045},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv083},
doi = {10.1093/BIOINFORMATICS/BTV083},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Mueller-Planitz15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MuggliPRB15,
author = {Martin D. Muggli and
Simon J. Puglisi and
Roy Ronen and
Christina Boucher},
title = {Misassembly detection using paired-end sequence reads and optical
mapping data},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {80--88},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv262},
doi = {10.1093/BIOINFORMATICS/BTV262},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MuggliPRB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MuhlhausenHK15,
author = {Stefanie M{\"{u}}hlhausen and
Marcel Hellkamp and
Martin Kollmar},
title = {GenePainter v. 2.0 resolves the taxonomic distribution of intron positions},
journal = {Bioinform.},
volume = {31},
number = {8},
pages = {1302--1304},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu798},
doi = {10.1093/BIOINFORMATICS/BTU798},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MuhlhausenHK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MusacchiaBPSS15,
author = {Francesco Musacchia and
Swaraj Basu and
Giuseppe Petrosino and
Marco Salvemini and
Remo Sanges},
title = {Annocript: a flexible pipeline for the annotation of transcriptomes
able to identify putative long noncoding RNAs},
journal = {Bioinform.},
volume = {31},
number = {13},
pages = {2199--2201},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv106},
doi = {10.1093/BIOINFORMATICS/BTV106},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MusacchiaBPSS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NadafMF15,
author = {Javad Nadaf and
Jacek Majewski and
Somayyeh Fahiminiya},
title = {ExomeAI: detection of recurrent allelic imbalance in tumors using
whole-exome sequencing data},
journal = {Bioinform.},
volume = {31},
number = {3},
pages = {429--431},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu665},
doi = {10.1093/BIOINFORMATICS/BTU665},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NadafMF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NaitoHBU15,
author = {Yuki Naito and
Kimihiro Hino and
Hidemasa Bono and
Kumiko Ui{-}Tei},
title = {CRISPRdirect: software for designing CRISPR/Cas guide {RNA} with reduced
off-target sites},
journal = {Bioinform.},
volume = {31},
number = {7},
pages = {1120--1123},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu743},
doi = {10.1093/BIOINFORMATICS/BTU743},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NaitoHBU15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NajafabadiAH15,
author = {Hamed Shateri Najafabadi and
Mihai Albu and
Timothy R. Hughes},
title = {Identification of {C2H2-ZF} binding preferences from ChIP-seq data
using {RCADE}},
journal = {Bioinform.},
volume = {31},
number = {17},
pages = {2879--2881},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv284},
doi = {10.1093/BIOINFORMATICS/BTV284},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NajafabadiAH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NaldiMMKTXSHC15,
author = {Aur{\'{e}}lien Naldi and
Pedro T. Monteiro and
Christoph M{\"{u}}ssel and
Hans A. Kestler and
Denis Thieffry and
Ioannis Xenarios and
Julio Saez{-}Rodriguez and
Tom{\'{a}}s Helikar and
Claudine Chaouiya},
title = {Cooperative development of logical modelling standards and tools with
CoLoMoTo},
journal = {Bioinform.},
volume = {31},
number = {7},
pages = {1154--1159},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv013},
doi = {10.1093/BIOINFORMATICS/BTV013},
timestamp = {Thu, 04 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NaldiMMKTXSHC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NatoCSNBW15,
author = {Alejandro Q. Nato and
Nicola H. Chapman and
Harkirat K. Sohi and
Hiep D. Nguyen and
Zoran Brkanac and
Ellen M. Wijsman},
title = {{PBAP:} a pipeline for file processing and quality control of pedigree
data with dense genetic markers},
journal = {Bioinform.},
volume = {31},
number = {23},
pages = {3790--3798},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv444},
doi = {10.1093/BIOINFORMATICS/BTV444},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NatoCSNBW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Navarro-GomezLS15,
author = {Daniel Navarro{-}Gomez and
Jeremy Leipzig and
Lishuang Shen and
Marie T. Lott and
Alphons P. M. Stassen and
Douglas C. Wallace and
Janey L. Wiggs and
Marni J. Falk and
Mannis van Oven and
Xiaowu Gai},
title = {Phy-Mer: a novel alignment-free and reference-independent mitochondrial
haplogroup classifier},
journal = {Bioinform.},
volume = {31},
number = {8},
pages = {1310--1312},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu825},
doi = {10.1093/BIOINFORMATICS/BTU825},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Navarro-GomezLS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NaveedHHBAG15,
author = {Hammad Naveed and
Umar S. Hameed and
Deborah Harrus and
William Bourguet and
Stefan T. Arold and
Xin Gao},
title = {An integrated structure- and system-based framework to identify new
targets of metabolites and known drugs},
journal = {Bioinform.},
volume = {31},
number = {24},
pages = {3922--3929},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv477},
doi = {10.1093/BIOINFORMATICS/BTV477},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NaveedHHBAG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NayfachFP15,
author = {Stephen Nayfach and
Michael A. Fischbach and
Katherine S. Pollard},
title = {MetaQuery: a web server for rapid annotation and quantitative analysis
of specific genes in the human gut microbiome},
journal = {Bioinform.},
volume = {31},
number = {20},
pages = {3368--3370},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv382},
doi = {10.1093/BIOINFORMATICS/BTV382},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NayfachFP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NeherB15,
author = {Richard A. Neher and
Trevor Bedford},
title = {nextflu: real-time tracking of seasonal influenza virus evolution
in humans},
journal = {Bioinform.},
volume = {31},
number = {21},
pages = {3546--3548},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv381},
doi = {10.1093/BIOINFORMATICS/BTV381},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NeherB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NelsonMH15,
author = {Chase W. Nelson and
Louise H. Moncla and
Austin L. Hughes},
title = {SNPGenie: estimating evolutionary parameters to detect natural selection
using pooled next-generation sequencing data},
journal = {Bioinform.},
volume = {31},
number = {22},
pages = {3709--3711},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv449},
doi = {10.1093/BIOINFORMATICS/BTV449},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NelsonMH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Newman15,
author = {Scott Newman},
title = {Interactive analysis of large cancer copy number studies with Copy
Number Explorer},
journal = {Bioinform.},
volume = {31},
number = {17},
pages = {2874--2876},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv298},
doi = {10.1093/BIOINFORMATICS/BTV298},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Newman15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NguyenV15,
author = {Minh N. Nguyen and
Chandra S. Verma},
title = {Rclick: a web server for comparison of {RNA} 3D structures},
journal = {Bioinform.},
volume = {31},
number = {6},
pages = {966--968},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu752},
doi = {10.1093/BIOINFORMATICS/BTU752},
timestamp = {Mon, 04 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NguyenV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NicolleRE15,
author = {R{\'{e}}my Nicolle and
Fran{\c{c}}ois Radvanyi and
Mohamed Elati},
title = {CoRegNet: reconstruction and integrated analysis of co-regulatory
networks},
journal = {Bioinform.},
volume = {31},
number = {18},
pages = {3066--3068},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv305},
doi = {10.1093/BIOINFORMATICS/BTV305},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NicolleRE15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NiederbergerFUP15,
author = {Theresa Niederberger and
Henrik Failmezger and
Diana Uskat and
Don Poron and
Ingmar Glauche and
Nico Scherf and
Ingo Roeder and
Timm Schroeder and
Achim Tresch},
title = {Factor graph analysis of live cell-imaging data reveals mechanisms
of cell fate decisions},
journal = {Bioinform.},
volume = {31},
number = {11},
pages = {1816--1823},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv040},
doi = {10.1093/BIOINFORMATICS/BTV040},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NiederbergerFUP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NikolskiySP15,
author = {Igor Nikolskiy and
Gary Siuzdak and
Gary J. Patti},
title = {Discriminating precursors of common fragments for large-scale metabolite
profiling by triple quadrupole mass spectrometry},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {2017--2023},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv085},
doi = {10.1093/BIOINFORMATICS/BTV085},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NikolskiySP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NohDW15,
author = {Katharina N{\"{o}}h and
Peter Droste and
Wolfgang Wiechert},
title = {Visual workflows for \({}^{\mbox{13}}\)C-metabolic flux analysis},
journal = {Bioinform.},
volume = {31},
number = {3},
pages = {346--354},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu585},
doi = {10.1093/BIOINFORMATICS/BTU585},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NohDW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NovakRHP15,
author = {Adam M. Novak and
Yohei Rosen and
David Haussler and
Benedict Paten},
title = {Canonical, stable, general mapping using context schemes},
journal = {Bioinform.},
volume = {31},
number = {22},
pages = {3569--3576},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv435},
doi = {10.1093/BIOINFORMATICS/BTV435},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NovakRHP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NumanagicMPSFS15,
author = {Ibrahim Numanagic and
Salem Malikic and
Victoria M. Pratt and
Todd C. Skaar and
David A. Flockhart and
S{\"{u}}leyman Cenk Sahinalp},
title = {Cypiripi: exact genotyping of \emph{CYP2D6} using high-throughput
sequencing data},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {27--34},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv232},
doi = {10.1093/BIOINFORMATICS/BTV232},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NumanagicMPSFS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OConnellSCHGC15,
author = {Jared O'Connell and
Ole Schulz{-}Trieglaff and
Emma Carlson and
Matthew M. Hims and
Niall A. Gormley and
Anthony J. Cox},
title = {NxTrim: optimized trimming of Illumina mate pair reads},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {2035--2037},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv057},
doi = {10.1093/BIOINFORMATICS/BTV057},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OConnellSCHGC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ONeillAPHKDB15,
author = {Kieran O'Neill and
Nima Aghaeepour and
Jeremy Parker and
Donna Hogge and
Aly Karsan and
Bakul Dalal and
Ryan Remy Brinkman},
title = {Deep profiling of multitube flow cytometry data},
journal = {Bioinform.},
volume = {31},
number = {10},
pages = {1623--1631},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv008},
doi = {10.1093/BIOINFORMATICS/BTV008},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ONeillAPHKDB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OchoaHW15,
author = {Idoia Ochoa and
Mikel Hernaez and
Tsachy Weissman},
title = {iDoComp: a compression scheme for assembled genomes},
journal = {Bioinform.},
volume = {31},
number = {5},
pages = {626--633},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu698},
doi = {10.1093/BIOINFORMATICS/BTU698},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OchoaHW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OchoaJVP15,
author = {David Ochoa and
David de Juan and
Alfonso Valencia and
Florencio Pazos},
title = {Detection of significant protein coevolution},
journal = {Bioinform.},
volume = {31},
number = {13},
pages = {2166--2173},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv102},
doi = {10.1093/BIOINFORMATICS/BTV102},
timestamp = {Sat, 19 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/OchoaJVP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OconeHMT15,
author = {Andrea Ocone and
Laleh Haghverdi and
Nikola S. M{\"{u}}ller and
Fabian J. Theis},
title = {Reconstructing gene regulatory dynamics from high-dimensional single-cell
snapshot data},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {89--96},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv257},
doi = {10.1093/BIOINFORMATICS/BTV257},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OconeHMT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OdenB15,
author = {Steve Oden and
Luciano Brocchieri},
title = {Quantitative frame analysis and the annotation of GC-rich (and other)
prokaryotic genomes. An application to \emph{Anaeromyxobacter dehalogenans}},
journal = {Bioinform.},
volume = {31},
number = {20},
pages = {3254--3261},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv339},
doi = {10.1093/BIOINFORMATICS/BTV339},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OdenB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OferL15,
author = {Dan Ofer and
Michal Linial},
title = {ProFET: Feature engineering captures high-level protein functions},
journal = {Bioinform.},
volume = {31},
number = {21},
pages = {3429--3436},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv345},
doi = {10.1093/BIOINFORMATICS/BTV345},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/OferL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OlimpieriMT15,
author = {Pier Paolo Olimpieri and
Paolo Marcatili and
Anna Tramontano},
title = {Tabhu: tools for antibody humanization},
journal = {Bioinform.},
volume = {31},
number = {3},
pages = {434--435},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu667},
doi = {10.1093/BIOINFORMATICS/BTU667},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OlimpieriMT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OlivaF15,
author = {Baldo Oliva and
Narcis Fernandez{-}Fuentes},
title = {Knowledge-based modeling of peptides at protein interfaces: PiPreD},
journal = {Bioinform.},
volume = {31},
number = {9},
pages = {1405--1410},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu838},
doi = {10.1093/BIOINFORMATICS/BTU838},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OlivaF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OliwaS15,
author = {Tomasz Oliwa and
Yang Shen},
title = {cNMA: a framework of encounter complex-based normal mode analysis
to model conformational changes in protein interactions},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {151--160},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv252},
doi = {10.1093/BIOINFORMATICS/BTV252},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OliwaS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OrensteinS15,
author = {Yaron Orenstein and
Ron Shamir},
title = {Design of shortest double-stranded {DNA} sequences covering all \emph{k}-mers
with applications to protein-binding microarrays and synthetic enhancers},
journal = {Bioinform.},
volume = {31},
number = {8},
pages = {1340},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv084},
doi = {10.1093/BIOINFORMATICS/BTV084},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OrensteinS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OuMCLYLCAKLL15,
author = {Min Ou and
Ricky Ma and
Jeanno Cheung and
Katie Lo and
Patrick Yee and
Tewei Luo and
T. L. Chan and
Chun Hang Au and
Ava Kwong and
Ruibang Luo and
Tak Wah Lam},
title = {database.bio: a web application for interpreting human variations},
journal = {Bioinform.},
volume = {31},
number = {24},
pages = {4035--4037},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv500},
doi = {10.1093/BIOINFORMATICS/BTV500},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/OuMCLYLCAKLL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OvermarsHSF15,
author = {Lex Overmars and
Sacha A. F. T. van Hijum and
Roland J. Siezen and
Christof Francke},
title = {CiVi: circular genome visualization with unique features to analyze
sequence elements},
journal = {Bioinform.},
volume = {31},
number = {17},
pages = {2867--2869},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv249},
doi = {10.1093/BIOINFORMATICS/BTV249},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OvermarsHSF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OyeyemiDRS15,
author = {Oyebode J. Oyeyemi and
Oluwafemi Davies and
David L. Robertson and
Jean{-}Marc Schwartz},
title = {A logical model of {HIV-1} interactions with the T-cell activation
signalling pathway},
journal = {Bioinform.},
volume = {31},
number = {7},
pages = {1075--1083},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu787},
doi = {10.1093/BIOINFORMATICS/BTU787},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OyeyemiDRS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OzerSD15,
author = {Bugra Ozer and
Mahmut Samil Sagiroglu and
H{\"{u}}seyin Demirci},
title = {GeneCOST: a novel scoring-based prioritization framework for identifying
disease causing genes},
journal = {Bioinform.},
volume = {31},
number = {22},
pages = {3715--3717},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv424},
doi = {10.1093/BIOINFORMATICS/BTV424},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OzerSD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PafilisPSFFPVLH15,
author = {Evangelos Pafilis and
Sune Pletscher{-}Frankild and
Julia Schnetzer and
Lucia Fanini and
Sarah Faulwetter and
Christina Pavloudi and
Katerina Vasileiadou and
Patrick Leary and
Jennifer Hammock and
Katja Schulz and
Cynthia Sims Parr and
Christos Arvanitidis and
Lars Juhl Jensen},
title = {{ENVIRONMENTS} and {EOL:} identification of Environment Ontology terms
in text and the annotation of the Encyclopedia of Life},
journal = {Bioinform.},
volume = {31},
number = {11},
pages = {1872--1874},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv045},
doi = {10.1093/BIOINFORMATICS/BTV045},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PafilisPSFFPVLH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PageCHWRHFFKP15,
author = {Andrew J. Page and
Carla A. Cummins and
Martin Hunt and
Vanessa K. Wong and
Sandra Reuter and
Matthew T. G. Holden and
Maria Fookes and
Daniel Falush and
Jacqueline A. Keane and
Julian Parkhill},
title = {Roary: rapid large-scale prokaryote pan genome analysis},
journal = {Bioinform.},
volume = {31},
number = {22},
pages = {3691--3693},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv421},
doi = {10.1093/BIOINFORMATICS/BTV421},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PageCHWRHFFKP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PalmeHB15,
author = {Johannes Palme and
Sepp Hochreiter and
Ulrich Bodenhofer},
title = {KeBABS: an {R} package for kernel-based analysis of biological sequences},
journal = {Bioinform.},
volume = {31},
number = {15},
pages = {2574--2576},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv176},
doi = {10.1093/BIOINFORMATICS/BTV176},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PalmeHB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PalmerOTLGDVPBA15,
author = {Andrew Palmer and
Ekaterina Ovchinnikova and
Mikael Thun{\'{e}} and
R{\'{e}}gis Lavigne and
Blandine Gu{\'{e}}vel and
Andrey Dyatlov and
Olga Vitek and
Charles Pineau and
Mats Bor{\'{e}}n and
Theodore Alexandrov},
title = {Using collective expert judgements to evaluate quality measures of
mass spectrometry images},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {375--384},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv266},
doi = {10.1093/BIOINFORMATICS/BTV266},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PalmerOTLGDVPBA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PalopoliLE15,
author = {Nicolas Palopoli and
Kieren T. Lythgow and
Richard J. Edwards},
title = {QSLiMFinder: improved short linear motif prediction using specific
query protein data},
journal = {Bioinform.},
volume = {31},
number = {14},
pages = {2284--2293},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv155},
doi = {10.1093/BIOINFORMATICS/BTV155},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PalopoliLE15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PanseTGS15,
author = {Christian Panse and
Christian Trachsel and
Jonas Grossmann and
Ralph Schlapbach},
title = {specL - an R/Bioconductor package to prepare peptide spectrum matches
for use in targeted proteomics},
journal = {Bioinform.},
volume = {31},
number = {13},
pages = {2228--2231},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv105},
doi = {10.1093/BIOINFORMATICS/BTV105},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PanseTGS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PapanikolaouPPT15,
author = {Nikolas Papanikolaou and
Georgios A. Pavlopoulos and
Evangelos Pafilis and
Theodosios Theodosiou and
Reinhard Schneider and
Venkata P. Satagopam and
Christos A. Ouzounis and
Aristides G. Eliopoulos and
Vasilis J. Promponas and
Ioannis Iliopoulos},
title = {BioTextQuest+: a knowledge integration platform for literature mining
and concept discovery},
journal = {Bioinform.},
volume = {31},
number = {6},
pages = {979},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv029},
doi = {10.1093/BIOINFORMATICS/BTV029},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PapanikolaouPPT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PapatsenkoL15,
author = {Dmitri A. Papatsenko and
Ihor R. Lemischka},
title = {NetExplore: a web server for modeling small network motifs},
journal = {Bioinform.},
volume = {31},
number = {11},
pages = {1860--1862},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv058},
doi = {10.1093/BIOINFORMATICS/BTV058},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PapatsenkoL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ParkBEHHTBZ15,
author = {Danny S. Park and
Brielin Brown and
Celeste Eng and
Scott Huntsman and
Donglei Hu and
Dara G. Torgerson and
Esteban Gonz{\`{a}}lez Burchard and
Noah Zaitlen},
title = {Adapt-Mix: learning local genetic correlation structure improves summary
statistics-based analyses},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {181--189},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv230},
doi = {10.1093/BIOINFORMATICS/BTV230},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ParkBEHHTBZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ParkBK15,
author = {Jeongbin Park and
Sangsu Bae and
Jin{-}Soo Kim},
title = {Cas-Designer: a web-based tool for choice of CRISPR-Cas9 target sites},
journal = {Bioinform.},
volume = {31},
number = {24},
pages = {4014--4016},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv537},
doi = {10.1093/BIOINFORMATICS/BTV537},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ParkBK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ParkKZWLT15,
author = {Christopher Y. Park and
Arjun Krishnan and
Qian Zhu and
Aaron K. Wong and
Young{-}Suk Lee and
Olga G. Troyanskaya},
title = {Tissue-aware data integration approach for the inference of pathway
interactions in metazoan organisms},
journal = {Bioinform.},
volume = {31},
number = {7},
pages = {1093--1101},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu786},
doi = {10.1093/BIOINFORMATICS/BTU786},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ParkKZWLT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PatelCZESB15,
author = {Vishal R. Patel and
Nicholas Ceglia and
Michael Zeller and
Kristin Eckel{-}Mahan and
Paolo Sassone{-}Corsi and
Pierre Baldi},
title = {The pervasiveness and plasticity of circadian oscillations: the coupled
circadian-oscillators framework},
journal = {Bioinform.},
volume = {31},
number = {19},
pages = {3181--3188},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv353},
doi = {10.1093/BIOINFORMATICS/BTV353},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PatelCZESB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PatilBHL15,
author = {Prasad Patil and
Pierre{-}Olivier Bachant{-}Winner and
Benjamin Haibe{-}Kains and
Jeffrey T. Leek},
title = {Test set bias affects reproducibility of gene signatures},
journal = {Bioinform.},
volume = {31},
number = {14},
pages = {2318--2323},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv157},
doi = {10.1093/BIOINFORMATICS/BTV157},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PatilBHL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PatrickBMLY15,
author = {Ellis Patrick and
Michael J. Buckley and
Samuel M{\"{u}}ller and
David M. Lin and
Jean Yee Hwa Yang},
title = {Inferring data-specific micro-RNA function through the joint ranking
of micro-RNA and pathways from matched micro-RNA and gene expression
data},
journal = {Bioinform.},
volume = {31},
number = {17},
pages = {2822--2828},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv220},
doi = {10.1093/BIOINFORMATICS/BTV220},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PatrickBMLY15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PatrickCKB15,
author = {Ralph Patrick and
Kim{-}Anh L{\^{e}} Cao and
Bostjan Kobe and
Mikael Bod{\'{e}}n},
title = {PhosphoPICK: modelling cellular context to map kinase-substrate phosphorylation
events},
journal = {Bioinform.},
volume = {31},
number = {3},
pages = {382--389},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu663},
doi = {10.1093/BIOINFORMATICS/BTU663},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PatrickCKB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PatroK15,
author = {Rob Patro and
Carl Kingsford},
title = {Data-dependent bucketing improves reference-free compression of sequencing
reads},
journal = {Bioinform.},
volume = {31},
number = {17},
pages = {2770--2777},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv248},
doi = {10.1093/BIOINFORMATICS/BTV248},
timestamp = {Tue, 03 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PatroK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PearseCCITWH15,
author = {William D. Pearse and
Marc W. Cadotte and
Jeannine Cavender{-}Bares and
Anthony R. Ives and
Caroline M. Tucker and
Steve C. Walker and
Matthew R. Helmus},
title = {\emph{pez}: phylogenetics for the environmental sciences},
journal = {Bioinform.},
volume = {31},
number = {17},
pages = {2888--2890},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv277},
doi = {10.1093/BIOINFORMATICS/BTV277},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PearseCCITWH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PenfoldMW15,
author = {Christopher A. Penfold and
Jonathan B. A. Millar and
David L. Wild},
title = {Inferring orthologous gene regulatory networks using interspecies
data fusion},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {97--105},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv267},
doi = {10.1093/BIOINFORMATICS/BTV267},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PenfoldMW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PengSSLLKY15,
author = {Jing Peng and
Xinyi Shi and
Yiming Sun and
Dongye Li and
Baohui Liu and
Fanjiang Kong and
Xiaohui Yuan},
title = {QTLMiner: {QTL} database curation by mining tables in literature},
journal = {Bioinform.},
volume = {31},
number = {10},
pages = {1689--1691},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv016},
doi = {10.1093/BIOINFORMATICS/BTV016},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PengSSLLKY15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PengoHM15,
author = {Thomas Pengo and
Seamus J. Holden and
Suliana Manley},
title = {PALMsiever: a tool to turn raw data into results for single-molecule
localization microscopy},
journal = {Bioinform.},
volume = {31},
number = {5},
pages = {797--798},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu720},
doi = {10.1093/BIOINFORMATICS/BTU720},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PengoHM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PeraMT15,
author = {Loredana Le Pera and
Mariagiovanna Mazzapioda and
Anna Tramontano},
title = {3USS: a web server for detecting alternative 3{\({'}\)}UTRs from
RNA-seq experiments},
journal = {Bioinform.},
volume = {31},
number = {11},
pages = {1845--1847},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv035},
doi = {10.1093/BIOINFORMATICS/BTV035},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PeraMT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PereyaslavetsGD15,
author = {Leonid B. Pereyaslavets and
Anna V. Glyakina and
Nikita V. Dovidchenko and
Igor V. Sokolovskiy and
Oxana V. Galzitskaya},
title = {What handedness and angles between helices has the studied three-helical
protein domain?},
journal = {Bioinform.},
volume = {31},
number = {6},
pages = {963--965},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu737},
doi = {10.1093/BIOINFORMATICS/BTU737},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PereyaslavetsGD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PereyaslavetsSG15,
author = {Leonid B. Pereyaslavets and
Igor V. Sokolovskiy and
Oxana V. Galzitskaya},
title = {FoldNucleus: web server for the prediction of {RNA} and protein folding
nuclei from their 3D structures},
journal = {Bioinform.},
volume = {31},
number = {20},
pages = {3374--3376},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv369},
doi = {10.1093/BIOINFORMATICS/BTV369},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PereyaslavetsSG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Perez-RiverolUS15,
author = {Yasset P{\'{e}}rez{-}Riverol and
Julian Uszkoreit and
Aniel S{\'{a}}nchez and
Tobias Ternent and
Noemi del{-}Toro and
Henning Hermjakob and
Juan Antonio Vizca{\'{\i}}no and
Rui Wang},
title = {ms-data-core-api: an open-source, metadata-oriented library for computational
proteomics},
journal = {Bioinform.},
volume = {31},
number = {17},
pages = {2903--2905},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv250},
doi = {10.1093/BIOINFORMATICS/BTV250},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Perez-RiverolUS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PeriwalS15,
author = {Vinita Periwal and
Vinod Scaria},
title = {Insights into structural variations and genome rearrangements in prokaryotic
genomes},
journal = {Bioinform.},
volume = {31},
number = {1},
pages = {1--9},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu600},
doi = {10.1093/BIOINFORMATICS/BTU600},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PeriwalS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PersTH15,
author = {Tune H. Pers and
Pascal N. Timshel and
Joel Hirschhorn},
title = {SNPsnap: a Web-based tool for identification and annotation of matched
SNPs},
journal = {Bioinform.},
volume = {31},
number = {3},
pages = {418--420},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu655},
doi = {10.1093/BIOINFORMATICS/BTU655},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PersTH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PertusiSBT15,
author = {Dante A. Pertusi and
Andrew E. Stine and
Linda J. Broadbelt and
Keith E. J. Tyo},
title = {Efficient searching and annotation of metabolic networks using chemical
similarity},
journal = {Bioinform.},
volume = {31},
number = {7},
pages = {1016--1024},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu760},
doi = {10.1093/BIOINFORMATICS/BTU760},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PertusiSBT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PetraliaWYT15,
author = {Francesca Petralia and
Pei Wang and
Jialiang Yang and
Zhidong Tu},
title = {Integrative random forest for gene regulatory network inference},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {197--205},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv268},
doi = {10.1093/BIOINFORMATICS/BTV268},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PetraliaWYT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PetrenkoD15,
author = {Pavel Petrenko and
Andrew C. Doxey},
title = {mimicMe: a web server for prediction and analysis of host-like proteins
in microbial pathogens},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {590--592},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu681},
doi = {10.1093/BIOINFORMATICS/BTU681},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PetrenkoD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PetriAGZK15,
author = {Tobias Petri and
Stefan Altmann and
Ludwig Geistlinger and
Ralf Zimmer and
Robert K{\"{u}}ffner},
title = {Addressing false discoveries in network inference},
journal = {Bioinform.},
volume = {31},
number = {17},
pages = {2836--2843},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv215},
doi = {10.1093/BIOINFORMATICS/BTV215},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PetriAGZK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PeyVTRGBP15,
author = {Jon Pey and
Juan A. Villar and
Luis Tobalina and
Alberto Rezola and
Jos{\'{e}} Manuel Garc{\'{\i}}a Carrasco and
John E. Beasley and
Francisco J. Planes},
title = {TreeEFM: calculating elementary flux modes using linear optimization
in a tree-based algorithm},
journal = {Bioinform.},
volume = {31},
number = {6},
pages = {897--904},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu733},
doi = {10.1093/BIOINFORMATICS/BTU733},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PeyVTRGBP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PhanstielBHS15,
author = {Douglas H. Phanstiel and
Alan P. Boyle and
Nastaran Heidari and
Michael P. Snyder},
title = {Mango: a bias-correcting ChIA-PET analysis pipeline},
journal = {Bioinform.},
volume = {31},
number = {19},
pages = {3092--3098},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv336},
doi = {10.1093/BIOINFORMATICS/BTV336},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PhanstielBHS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PietalBK15,
author = {Michal J. Pietal and
Janusz M. Bujnicki and
Lukasz Pawel Kozlowski},
title = {GDFuzz3D: a method for protein 3D structure reconstruction from contact
maps, based on a non-Euclidean distance function},
journal = {Bioinform.},
volume = {31},
number = {21},
pages = {3499--3505},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv390},
doi = {10.1093/BIOINFORMATICS/BTV390},
timestamp = {Wed, 28 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PietalBK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PirinenLZCDDMR15,
author = {Matti Pirinen and
Tuuli Lappalainen and
Noah A. Zaitlen and
Emmanouil T. Dermitzakis and
Peter Donnelly and
Mark I. McCarthy and
Manuel A. Rivas},
title = {Assessing allele-specific expression across multiple tissues from
RNA-seq read data},
journal = {Bioinform.},
volume = {31},
number = {15},
pages = {2497--2504},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv074},
doi = {10.1093/BIOINFORMATICS/BTV074},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PirinenLZCDDMR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PomyenSEK15,
author = {Yotsawat Pomyen and
Marcelo Segura and
Timothy M. D. Ebbels and
Hector C. Keun},
title = {Over-representation of correlation analysis {(ORCA):} a method for
identifying associations between variable sets},
journal = {Bioinform.},
volume = {31},
number = {1},
pages = {102--108},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu589},
doi = {10.1093/BIOINFORMATICS/BTU589},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PomyenSEK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PookhaoSLJDJA15,
author = {Naruekamol Pookhao and
Michael B. Sohn and
Qike Li and
Isaac Jenkins and
Ruofei Du and
Hongmei Jiang and
Lingling An},
title = {A two-stage statistical procedure for feature selection and comparison
in functional analysis of metagenomes},
journal = {Bioinform.},
volume = {31},
number = {2},
pages = {158--165},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu635},
doi = {10.1093/BIOINFORMATICS/BTU635},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PookhaoSLJDJA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PopescuH15,
author = {Andrei{-}Alin Popescu and
Katharina T. Huber},
title = {{PSIKO2:} a fast and versatile tool to infer population stratification
on various levels in {GWAS}},
journal = {Bioinform.},
volume = {31},
number = {21},
pages = {3552--3554},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv396},
doi = {10.1093/BIOINFORMATICS/BTV396},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PopescuH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PorterM15,
author = {Craig T. Porter and
Andrew C. R. Martin},
title = {BiopLib and BiopTools - a {C} programming library and toolset for
manipulating protein structure},
journal = {Bioinform.},
volume = {31},
number = {24},
pages = {4017--4019},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv482},
doi = {10.1093/BIOINFORMATICS/BTV482},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PorterM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PouletALPAT15,
author = {Axel Poulet and
Ignacio Arganda{-}Carreras and
David Legland and
Aline V. Probst and
Philippe Andrey and
Christophe Tatout},
title = {\emph{NucleusJ}: an ImageJ plugin for quantifying 3D images of interphase
nuclei},
journal = {Bioinform.},
volume = {31},
number = {7},
pages = {1144--1146},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu774},
doi = {10.1093/BIOINFORMATICS/BTU774},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PouletALPAT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PratapaBR15,
author = {Aditya Pratapa and
Shankar Balachandran and
Karthik Raman},
title = {Fast-SL: an efficient algorithm to identify synthetic lethal sets
in metabolic networks},
journal = {Bioinform.},
volume = {31},
number = {20},
pages = {3299--3305},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv352},
doi = {10.1093/BIOINFORMATICS/BTV352},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PratapaBR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PretisKMMRAP15,
author = {Stefano de Pretis and
Theresia Kress and
Marco J. Morelli and
Giorgio E. M. Melloni and
Laura Riva and
Bruno Amati and
Mattia Pelizzola},
title = {INSPEcT: a computational tool to infer mRNA synthesis, processing
and degradation dynamics from {RNA-} and 4sU-seq time course experiments},
journal = {Bioinform.},
volume = {31},
number = {17},
pages = {2829--2835},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv288},
doi = {10.1093/BIOINFORMATICS/BTV288},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PretisKMMRAP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PriebeKHGL15,
author = {Steffen Priebe and
Christian Kreisel and
Fabian Horn and
Reinhard Guthke and
J{\"{o}}rg Linde},
title = {FungiFun2: a comprehensive online resource for systematic analysis
of gene lists from fungal species},
journal = {Bioinform.},
volume = {31},
number = {3},
pages = {445--446},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu627},
doi = {10.1093/BIOINFORMATICS/BTU627},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PriebeKHGL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ProchenkaPGKSZS15,
author = {Agnieszka Prochenka and
Piotr Pokarowski and
Piotr Gasperowicz and
Joanna Kosinska and
Piotr Stawinski and
Renata Zbiec{-}Piekarska and
Magdalena Sp{\'{o}}lnicka and
Wojciech Branicki and
Rafal Ploski},
title = {A cautionary note on using binary calls for analysis of {DNA} methylation},
journal = {Bioinform.},
volume = {31},
number = {9},
pages = {1519--1520},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv090},
doi = {10.1093/BIOINFORMATICS/BTV090},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ProchenkaPGKSZS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ProfitiFC15,
author = {Giuseppe Profiti and
Piero Fariselli and
Rita Casadio},
title = {AlignBucket: a tool to speed up 'all-against-all' protein sequence
alignments optimizing length constraints},
journal = {Bioinform.},
volume = {31},
number = {23},
pages = {3841--3843},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv451},
doi = {10.1093/BIOINFORMATICS/BTV451},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ProfitiFC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PybusLDULBE15,
author = {Marc Pybus and
Pierre Luisi and
Giovanni Marco Dall'Olio and
Manu Uzkudun and
Hafid Laayouni and
Jaume Bertranpetit and
Johannes Engelken},
title = {Hierarchical boosting: a machine-learning framework to detect and
classify hard selective sweeps in human populations},
journal = {Bioinform.},
volume = {31},
number = {24},
pages = {3946--3952},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv493},
doi = {10.1093/BIOINFORMATICS/BTV493},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PybusLDULBE15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/QinMC15,
author = {Sheng Qin and
Fei Ma and
Liming Chen},
title = {Gene regulatory networks by transcription factors and microRNAs in
breast cancer},
journal = {Bioinform.},
volume = {31},
number = {1},
pages = {76--83},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu597},
doi = {10.1093/BIOINFORMATICS/BTU597},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/QinMC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/QuangCX15,
author = {Daniel Quang and
Yifei Chen and
Xiaohui Xie},
title = {{DANN:} a deep learning approach for annotating the pathogenicity
of genetic variants},
journal = {Bioinform.},
volume = {31},
number = {5},
pages = {761--763},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu703},
doi = {10.1093/BIOINFORMATICS/BTU703},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/QuangCX15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/QuinnBCPPNZVBBR15,
author = {Gregory B. Quinn and
Chunxiao Bi and
Cole H. Christie and
Kyle Pang and
Andreas Prlic and
Takanori Nakane and
Christine Zardecki and
Maria Voigt and
Helen M. Berman and
Philip E. Bourne and
Peter W. Rose},
title = {{RCSB} {PDB} \emph{Mobile}: iOS and Android mobile apps to provide
data access and visualization to the {RCSB} Protein Data Bank},
journal = {Bioinform.},
volume = {31},
number = {1},
pages = {126--127},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu596},
doi = {10.1093/BIOINFORMATICS/BTU596},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/QuinnBCPPNZVBBR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RackhamDPB15,
author = {Owen J. L. Rackham and
Petros Dellaportas and
Enrico Petretto and
Leonardo Bottolo},
title = {WGBSSuite: simulating whole-genome bisulphite sequencing data and
benchmarking differential {DNA} methylation analysis tools},
journal = {Bioinform.},
volume = {31},
number = {14},
pages = {2371--2373},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv114},
doi = {10.1093/BIOINFORMATICS/BTV114},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RackhamDPB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RahmanJJLBP15,
author = {Mumtahena Rahman and
Laurie K. Jackson and
W. Evan Johnson and
Dean Y. Li and
Andrea H. Bild and
Stephen R. Piccolo},
title = {Alternative preprocessing of RNA-Sequencing data in The Cancer Genome
Atlas leads to improved analysis results},
journal = {Bioinform.},
volume = {31},
number = {22},
pages = {3666--3672},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv377},
doi = {10.1093/BIOINFORMATICS/BTV377},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RahmanJJLBP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RahmanMLJ15,
author = {Tameera Rahman and
Mana Mahapatra and
Emma Laing and
Yaochu Jin},
title = {Evolutionary non-linear modelling for selecting vaccines against antigenically
variable viruses},
journal = {Bioinform.},
volume = {31},
number = {6},
pages = {834--840},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu768},
doi = {10.1093/BIOINFORMATICS/BTU768},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RahmanMLJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RaimondiOV15,
author = {Daniele Raimondi and
Gabriele Orlando and
Wim F. Vranken},
title = {Clustering-based model of cysteine co-evolution improves disulfide
bond connectivity prediction and reduces homologous sequence requirements},
journal = {Bioinform.},
volume = {31},
number = {8},
pages = {1219--1225},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu794},
doi = {10.1093/BIOINFORMATICS/BTU794},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RaimondiOV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RamazzottiCLGKM15,
author = {Daniele Ramazzotti and
Giulio Caravagna and
Loes Olde Loohuis and
Alex Graudenzi and
Ilya Korsunsky and
Giancarlo Mauri and
Marco Antoniotti and
Bud Mishra},
title = {{CAPRI:} efficient inference of cancer progression models from cross-sectional
data},
journal = {Bioinform.},
volume = {31},
number = {18},
pages = {3016--3026},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv296},
doi = {10.1093/BIOINFORMATICS/BTV296},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RamazzottiCLGKM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Ramirez-Gonzalez15,
author = {Ricardo H. Ramirez{-}Gonzalez and
Cristobal Uauy and
Mario C{\'{a}}ccamo},
title = {PolyMarker: {A} fast polyploid primer design pipeline},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {2038--2039},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv069},
doi = {10.1093/BIOINFORMATICS/BTV069},
timestamp = {Tue, 02 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Ramirez-Gonzalez15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RanzingerACKLOS15,
author = {Ren{\'{e}} Ranzinger and
Kiyoko F. Aoki{-}Kinoshita and
Matthew P. Campbell and
Shin Kawano and
Thomas L{\"{u}}tteke and
Shujiro Okuda and
Daisuke Shinmachi and
Toshihide Shikanai and
Hiromichi Sawaki and
Philip V. Toukach and
Masaaki Matsubara and
Issaku Yamada and
Hisashi Narimatsu},
title = {GlycoRDF: an ontology to standardize glycomics data in {RDF}},
journal = {Bioinform.},
volume = {31},
number = {6},
pages = {919--925},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu732},
doi = {10.1093/BIOINFORMATICS/BTU732},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RanzingerACKLOS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RapsomanikiCGKLL15,
author = {Maria Anna Rapsomaniki and
Eugenio Cinquemani and
Nickolaos{-}Nikiforos Giakoumakis and
Panagiotis Kotsantis and
John Lygeros and
Zoi Lygerou},
title = {Inference of protein kinetics by stochastic modeling and simulation
of fluorescence recovery after photobleaching experiments},
journal = {Bioinform.},
volume = {31},
number = {3},
pages = {355--362},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu619},
doi = {10.1093/BIOINFORMATICS/BTU619},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RapsomanikiCGKLL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RathiMG15,
author = {Prakash Chandra Rathi and
Daniel Mulnaes and
Holger Gohlke},
title = {VisualCNA: a {GUI} for interactive constraint network analysis and
protein engineering for improving thermostability},
journal = {Bioinform.},
volume = {31},
number = {14},
pages = {2394--2396},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv139},
doi = {10.1093/BIOINFORMATICS/BTV139},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RathiMG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RauMMC15,
author = {Andrea Rau and
Cathy Maugis{-}Rabusseau and
Marie{-}Laure Martin{-}Magniette and
Gilles Celeux},
title = {Co-expression analysis of high-throughput transcriptome sequencing
data with Poisson mixture models},
journal = {Bioinform.},
volume = {31},
number = {9},
pages = {1420--1427},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu845},
doi = {10.1093/BIOINFORMATICS/BTU845},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RauMMC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RaueSSKMHVTAEMH15,
author = {Andreas Raue and
Bernhard Steiert and
Max Schelker and
Clemens Kreutz and
Tim Maiwald and
Helge Hass and
Joep Vanlier and
Christian T{\"{o}}nsing and
Lorenz Adlung and
Raphael Engesser and
Wolfgang Mader and
Tim Heinemann and
Jan Hasenauer and
Marcel Schilling and
Thomas H{\"{o}}fer and
Edda Klipp and
Fabian J. Theis and
Ursula Klingm{\"{u}}ller and
Birgit Schoeberl and
Jens Timmer},
title = {Data2Dynamics: a modeling environment tailored to parameter estimation
in dynamical systems},
journal = {Bioinform.},
volume = {31},
number = {21},
pages = {3558--3560},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv405},
doi = {10.1093/BIOINFORMATICS/BTV405},
timestamp = {Sat, 10 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RaueSSKMHVTAEMH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ReamBF15,
author = {David C. Ream and
Asma R. Bankapur and
Iddo Friedberg},
title = {An event-driven approach for studying gene block evolution in bacteria},
journal = {Bioinform.},
volume = {31},
number = {13},
pages = {2075--2083},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv128},
doi = {10.1093/BIOINFORMATICS/BTV128},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ReamBF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RegoK15,
author = {Nicholas Rego and
David Koes},
title = {3Dmol.js: molecular visualization with WebGL},
journal = {Bioinform.},
volume = {31},
number = {8},
pages = {1322--1324},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu829},
doi = {10.1093/BIOINFORMATICS/BTU829},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RegoK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RenaudSMWK15,
author = {Gabriel Renaud and
Udo Stenzel and
Tomislav Maricic and
Victor Wiebe and
Janet Kelso},
title = {deML: robust demultiplexing of Illumina sequences using a likelihood-based
approach},
journal = {Bioinform.},
volume = {31},
number = {5},
pages = {770--772},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu719},
doi = {10.1093/BIOINFORMATICS/BTU719},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RenaudSMWK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RensMT15,
author = {Karen E. van Rens and
Veli M{\"{a}}kinen and
Alexandru I. Tomescu},
title = {{SNV-PPILP:} refined {SNV} calling for tumor data using perfect phylogenies
and {ILP}},
journal = {Bioinform.},
volume = {31},
number = {7},
pages = {1133--1135},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu755},
doi = {10.1093/BIOINFORMATICS/BTU755},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RensMT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Reyes-HerreraSS15,
author = {Paula Helena Reyes{-}Herrera and
C. A. Speck{-}Hernandez and
Carlos Andr{\'{e}}s Sierra and
S. Herrera},
title = {BackCLIP: a tool to identify common background presence in {PAR-CLIP}
datasets},
journal = {Bioinform.},
volume = {31},
number = {22},
pages = {3703--3705},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv442},
doi = {10.1093/BIOINFORMATICS/BTV442},
timestamp = {Thu, 08 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Reyes-HerreraSS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Rezaei-GhalehKM15,
author = {Nasrollah Rezaei{-}Ghaleh and
Frederik Klama and
Francesca Munari and
Markus Zweckstetter},
title = {{HYCUD:} a computational tool for prediction of effective rotational
correlation time in flexible proteins},
journal = {Bioinform.},
volume = {31},
number = {8},
pages = {1319--1321},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu824},
doi = {10.1093/BIOINFORMATICS/BTU824},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Rezaei-GhalehKM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RhrissorrakraiBBNPMDIARPSMH15,
author = {Kahn Rhrissorrakrai and
Vincenzo Belcastro and
Erhan Bilal and
Raquel Norel and
Carine Poussin and
Carole Mathis and
R{\'{e}}mi H. J. Dulize and
Nikolai V. Ivanov and
Leonidas G. Alexopoulos and
John Jeremy Rice and
Manuel C. Peitsch and
Gustavo Stolovitzky and
Pablo Meyer and
Julia Hoeng},
title = {Understanding the limits of animal models as predictors of human biology:
lessons learned from the sbv {IMPROVER} Species Translation Challenge},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {471--483},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu611},
doi = {10.1093/BIOINFORMATICS/BTU611},
timestamp = {Fri, 01 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RhrissorrakraiBBNPMDIARPSMH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RibeiroMS15,
author = {Judemir Ribeiro and
Francisco Melo and
Andreas Sch{\"{u}}ller},
title = {PDIviz: analysis and visualization of protein-DNA binding interfaces},
journal = {Bioinform.},
volume = {31},
number = {16},
pages = {2751--2753},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv203},
doi = {10.1093/BIOINFORMATICS/BTV203},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RibeiroMS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RichardetCTH15,
author = {Renaud Richardet and
Jean{-}C{\'{e}}dric Chappelier and
Martin Telefont and
Sean L. Hill},
title = {Large-scale extraction of brain connectivity from the neuroscientific
literature},
journal = {Bioinform.},
volume = {31},
number = {10},
pages = {1640--1647},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv025},
doi = {10.1093/BIOINFORMATICS/BTV025},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RichardetCTH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RobillardMHD15,
author = {David E. Robillard and
Phelelani T. Mpangase and
Scott Hazelhurst and
Frank Dehne},
title = {SpeeDB: fast structural protein searches},
journal = {Bioinform.},
volume = {31},
number = {18},
pages = {3027--3034},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv274},
doi = {10.1093/BIOINFORMATICS/BTV274},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RobillardMHD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RobinsonAE15,
author = {Martin Robinson and
Steven S. Andrews and
Radek Erban},
title = {Multiscale reaction-diffusion simulations with Smoldyn},
journal = {Bioinform.},
volume = {31},
number = {14},
pages = {2406--2408},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv149},
doi = {10.1093/BIOINFORMATICS/BTV149},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RobinsonAE15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RodigerBS15,
author = {Stefan R{\"{o}}diger and
Michal Burdukiewicz and
Peter Schierack},
title = {chipPCR: an {R} package to pre-process raw data of amplification curves},
journal = {Bioinform.},
volume = {31},
number = {17},
pages = {2900--2902},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv205},
doi = {10.1093/BIOINFORMATICS/BTV205},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RodigerBS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RodriguezTWVKGM15,
author = {Nicolas Rodriguez and
Alex Thomas and
Leandro H. Watanabe and
Ibrahim Y. Vazirabad and
Victor Kofia and
Harold F. G{\'{o}}mez and
Florian Mittag and
Jakob Matthes and
Jan Rudolph and
Finja Wrzodek and
Eugen Netz and
Alexander Diamantikos and
Johannes Eichner and
Roland Keller and
Clemens Wrzodek and
Sebastian Fr{\"{o}}hlich and
Nathan E. Lewis and
Chris J. Myers and
Nicolas Le Nov{\`{e}}re and
Bernhard {\O}. Palsson and
Michael Hucka and
Andreas Dr{\"{a}}ger},
title = {{JSBML} 1.0: providing a smorgasbord of options to encode systems
biology models},
journal = {Bioinform.},
volume = {31},
number = {20},
pages = {3383--3386},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv341},
doi = {10.1093/BIOINFORMATICS/BTV341},
timestamp = {Thu, 03 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RodriguezTWVKGM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RognvaldssonYG15,
author = {Thorsteinn S. R{\"{o}}gnvaldsson and
Liwen You and
Daniel Garwicz},
title = {State of the art prediction of {HIV-1} protease cleavage sites},
journal = {Bioinform.},
volume = {31},
number = {8},
pages = {1204--1210},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu810},
doi = {10.1093/BIOINFORMATICS/BTU810},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RognvaldssonYG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RoqueiroWATMB15,
author = {Damian Roqueiro and
Menno J. Witteveen and
Verneri Anttila and
Gisela M. Terwindt and
Arn M. J. M. van den Maagdenberg and
Karsten M. Borgwardt},
title = {\emph{In silico} phenotyping via co-training for improved phenotype
prediction from genotype},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {303--310},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv254},
doi = {10.1093/BIOINFORMATICS/BTV254},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RoqueiroWATMB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RostRAM15,
author = {Hannes L. R{\"{o}}st and
George Rosenberger and
Ruedi Aebersold and
Lars Malmstr{\"{o}}m},
title = {Efficient visualization of high-throughput targeted proteomics experiments:
{TAPIR}},
journal = {Bioinform.},
volume = {31},
number = {14},
pages = {2415--2417},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv152},
doi = {10.1093/BIOINFORMATICS/BTV152},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RostRAM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RoyS15,
author = {Ambrish Roy and
Jeffrey Skolnick},
title = {{LIGSIFT:} an open-source tool for ligand structural alignment and
virtual screening},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {539--544},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu692},
doi = {10.1093/BIOINFORMATICS/BTU692},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RoyS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RudikDLFP15,
author = {Anastasia V. Rudik and
Alexander V. Dmitriev and
Alexey Lagunin and
Dmitry Filimonov and
Vladimir Poroikov},
title = {{SOMP:} web server for \emph{in silico} prediction of sites of metabolism
for drug-like compounds},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {2046--2048},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv087},
doi = {10.1093/BIOINFORMATICS/BTV087},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RudikDLFP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RyallSYHKKHT15,
author = {Karen A. Ryall and
Jimin Shin and
Minjae Yoo and
Trista K. Hinz and
Jihye Kim and
Jaewoo Kang and
Lynn E. Heasley and
Aik Choon Tan},
title = {Identifying kinase dependency in cancer cells by integrating high-throughput
drug screening and kinase inhibition data},
journal = {Bioinform.},
volume = {31},
number = {23},
pages = {3799--3806},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv427},
doi = {10.1093/BIOINFORMATICS/BTV427},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RyallSYHKKHT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SaddikiMF15,
author = {Hachem Saddiki and
Jon McAuliffe and
Patrick Flaherty},
title = {{GLAD:} a mixed-membership model for heterogeneous tumor subtype classification},
journal = {Bioinform.},
volume = {31},
number = {2},
pages = {225--232},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu618},
doi = {10.1093/BIOINFORMATICS/BTU618},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SaddikiMF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SafonovaBKSLSDS15,
author = {Yana Safonova and
Stefano Bonissone and
Eugene Kurpilyansky and
Ekaterina Starostina and
Alla L. Lapidus and
Jeremy Stinson and
Laura DePalatis and
Wendy Sandoval and
Jennie Lill and
Pavel A. Pevzner},
title = {IgRepertoireConstructor: a novel algorithm for antibody repertoire
construction and immunoproteogenomics analysis},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {53--61},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv238},
doi = {10.1093/BIOINFORMATICS/BTV238},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SafonovaBKSLSDS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SafonovaLL15,
author = {Yana Safonova and
Alla L. Lapidus and
Jennie Lill},
title = {IgSimulator: a versatile immunosequencing simulator},
journal = {Bioinform.},
volume = {31},
number = {19},
pages = {3213--3215},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv326},
doi = {10.1093/BIOINFORMATICS/BTV326},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SafonovaLL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SahaR15,
author = {Subrata Saha and
Sanguthevar Rajasekaran},
title = {{ERGC:} an efficient referential genome compression algorithm},
journal = {Bioinform.},
volume = {31},
number = {21},
pages = {3468--3475},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv399},
doi = {10.1093/BIOINFORMATICS/BTV399},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SahaR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SamishBN15,
author = {Ilan Samish and
Philip E. Bourne and
Rafael J. Najmanovich},
title = {Editor's Choice: Achievements and challenges in structural bioinformatics
and computational biophysics},
journal = {Bioinform.},
volume = {31},
number = {1},
pages = {146--150},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu769},
doi = {10.1093/BIOINFORMATICS/BTU769},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SamishBN15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SassBMT15,
author = {Steffen Sass and
Florian Buettner and
Nikola S. M{\"{u}}ller and
Fabian J. Theis},
title = {{RAMONA:} a Web application for gene set analysis on multilevel omics
data},
journal = {Bioinform.},
volume = {31},
number = {1},
pages = {128--130},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu610},
doi = {10.1093/BIOINFORMATICS/BTU610},
timestamp = {Thu, 17 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SassBMT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SatoS15,
author = {Tetsuya Sato and
Mikita Suyama},
title = {GenomeCons: a web server for manipulating multiple genome sequence
alignments and their consensus sequences},
journal = {Bioinform.},
volume = {31},
number = {8},
pages = {1293--1295},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu803},
doi = {10.1093/BIOINFORMATICS/BTU803},
timestamp = {Tue, 10 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SatoS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SavojardoMFC15,
author = {Castrense Savojardo and
Pier Luigi Martelli and
Piero Fariselli and
Rita Casadio},
title = {TPpred3 detects and discriminates mitochondrial and chloroplastic
targeting peptides in eukaryotic proteins},
journal = {Bioinform.},
volume = {31},
number = {20},
pages = {3269--3275},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv367},
doi = {10.1093/BIOINFORMATICS/BTV367},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SavojardoMFC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchaperKPMMSZXA15,
author = {Elke Schaper and
Alexander Korsunsky and
Julija Pecerska and
Antonio Messina and
Riccardo Murri and
Heinz Stockinger and
Stefan Zoller and
Ioannis Xenarios and
Maria Anisimova},
title = {{TRAL:} tandem repeat annotation library},
journal = {Bioinform.},
volume = {31},
number = {18},
pages = {3051--3053},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv306},
doi = {10.1093/BIOINFORMATICS/BTV306},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchaperKPMMSZXA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchenkelbergB15,
author = {Christian D. Schenkelberg and
Christopher Bystroff},
title = {InteractiveROSETTA: a graphical user interface for the PyRosetta protein
modeling suite},
journal = {Bioinform.},
volume = {31},
number = {24},
pages = {4023--4025},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv492},
doi = {10.1093/BIOINFORMATICS/BTV492},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchenkelbergB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchieggHHKHH15,
author = {Martin Schiegg and
Philipp Hanslovsky and
Carsten Haubold and
Ullrich K{\"{o}}the and
Lars Hufnagel and
Fred A. Hamprecht},
title = {Graphical model for joint segmentation and tracking of multiple dividing
cells},
journal = {Bioinform.},
volume = {31},
number = {6},
pages = {948--956},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu764},
doi = {10.1093/BIOINFORMATICS/BTU764},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchieggHHKHH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchisslerGLALPL15,
author = {A. Grant Schissler and
Vincent Gardeux and
Qike Li and
Ikbel Achour and
Haiquan Li and
Walter W. Piegorsch and
Yves A. Lussier},
title = {Dynamic changes of RNA-sequencing expression for precision medicine:
N-of-1-pathways Mahalanobis distance within pathways of single subjects
predicts breast cancer survival},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {293--302},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv253},
doi = {10.1093/BIOINFORMATICS/BTV253},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchisslerGLALPL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchmidG15,
author = {Marc W. Schmid and
Ueli Grossniklaus},
title = {Rcount: simple and flexible RNA-Seq read counting},
journal = {Bioinform.},
volume = {31},
number = {3},
pages = {436--437},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu680},
doi = {10.1093/BIOINFORMATICS/BTU680},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchmidG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchmidH15,
author = {Benjamin Schmid and
Jan Huisken},
title = {Real-time multi-view deconvolution},
journal = {Bioinform.},
volume = {31},
number = {20},
pages = {3398--3400},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv387},
doi = {10.1093/BIOINFORMATICS/BTV387},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchmidH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchmidtWBKK15,
author = {Ralf Schmidt and
Silvio Waschina and
Daniela Boettger{-}Schmidt and
Christian Kost and
Christoph Kaleta},
title = {Computing autocatalytic sets to unravel inconsistencies in metabolic
network reconstructions},
journal = {Bioinform.},
volume = {31},
number = {3},
pages = {373--381},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu658},
doi = {10.1093/BIOINFORMATICS/BTU658},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchmidtWBKK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchmidtZZCMCW15,
author = {Ellen M. Schmidt and
Ji Zhang and
Wei Zhou and
Jin Chen and
Karen L. Mohlke and
Y. Eugene Chen and
Cristen J. Willer},
title = {{GREGOR:} evaluating global enrichment of trait-associated variants
in epigenomic features using a systematic, data-driven approach},
journal = {Bioinform.},
volume = {31},
number = {16},
pages = {2601--2606},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv201},
doi = {10.1093/BIOINFORMATICS/BTV201},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchmidtZZCMCW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchreiberK15,
author = {Jacob Schreiber and
Kevin Karplus},
title = {Analysis of nanopore data using hidden Markov models},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {1897--1903},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv046},
doi = {10.1093/BIOINFORMATICS/BTV046},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchreiberK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchubertBJK15,
author = {Benjamin Schubert and
Hans{-}Philipp Brachvogel and
Christopher J{\"{u}}rges and
Oliver Kohlbacher},
title = {EpiToolKit - a web-based workbench for vaccine design},
journal = {Bioinform.},
volume = {31},
number = {13},
pages = {2211--2213},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv116},
doi = {10.1093/BIOINFORMATICS/BTV116},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchubertBJK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ScornavaccaJS15,
author = {C{\'{e}}line Scornavacca and
Edwin Jacox and
Gergely J. Sz{\"{o}}llosi},
title = {Joint amalgamation of most parsimonious reconciled gene trees},
journal = {Bioinform.},
volume = {31},
number = {6},
pages = {841--848},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu728},
doi = {10.1093/BIOINFORMATICS/BTU728},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ScornavaccaJS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SebagPRBVW15,
author = {Alice Schoenauer Sebag and
Sandra Plancade and
C{\'{e}}line Raulet{-}Tomkiewicz and
Robert Barouki and
Jean{-}Philippe Vert and
Thomas Walter},
title = {A generic methodological framework for studying single cell motility
in high-throughput time-lapse data},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {320--328},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv225},
doi = {10.1093/BIOINFORMATICS/BTV225},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SebagPRBVW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SeeberFRMF15,
author = {Michele Seeber and
Angelo Felline and
Francesco Raimondi and
Simona Mariani and
Francesca Fanelli},
title = {WebPSN: a web server for high-throughput investigation of structural
communication in biomacromolecules},
journal = {Bioinform.},
volume = {31},
number = {5},
pages = {779--781},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu718},
doi = {10.1093/BIOINFORMATICS/BTU718},
timestamp = {Thu, 11 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SeeberFRMF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SeguraSAAC15,
author = {Joan Segura and
Carlos Oscar S{\'{a}}nchez Sorzano and
Jes{\'{u}}s Cuenca Alba and
Patrick Aloy and
Jos{\'{e}} Mar{\'{\i}}a Carazo},
title = {Using neighborhood cohesiveness to infer interactions between protein
domains},
journal = {Bioinform.},
volume = {31},
number = {15},
pages = {2545--2552},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv188},
doi = {10.1093/BIOINFORMATICS/BTV188},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SeguraSAAC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Sela-CulangAPO15,
author = {Inbal Sela{-}Culang and
Shaul Ashkenazi and
Bjoern Peters and
Yanay Ofran},
title = {{PEASE:} predicting B-cell epitopes utilizing antibody sequence},
journal = {Bioinform.},
volume = {31},
number = {8},
pages = {1313--1315},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu790},
doi = {10.1093/BIOINFORMATICS/BTU790},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Sela-CulangAPO15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShahmuradovS15,
author = {Ilham A. Shahmuradov and
Victor V. Solovyev},
title = {Nsite, NsiteH and NsiteM computer tools for studying transcription
regulatory elements},
journal = {Bioinform.},
volume = {31},
number = {21},
pages = {3544--3545},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv404},
doi = {10.1093/BIOINFORMATICS/BTV404},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShahmuradovS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShaoM15,
author = {Mingfu Shao and
Bernard M. E. Moret},
title = {Comparing genomes with rearrangements and segmental duplications},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {329--338},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv229},
doi = {10.1093/BIOINFORMATICS/BTV229},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShaoM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShaoSTLLT15,
author = {Chi{-}Yu Shao and
Bo{-}Han Su and
Yi{-}shu Tu and
Chieh Lin and
Olivia A. Lin and
Yufeng J. Tseng},
title = {CypRules: a rule-based {P450} inhibition prediction server},
journal = {Bioinform.},
volume = {31},
number = {11},
pages = {1869--1871},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv043},
doi = {10.1093/BIOINFORMATICS/BTV043},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShaoSTLLT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SheikhizadehR15,
author = {Siavash Sheikhizadeh and
Dick de Ridder},
title = {{ACE:} accurate correction of errors using \emph{K}-mer tries},
journal = {Bioinform.},
volume = {31},
number = {19},
pages = {3216--3218},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv332},
doi = {10.1093/BIOINFORMATICS/BTV332},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SheikhizadehR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShenGWL15,
author = {Yi Shen and
Fan Gao and
Minghui Wang and
Ao Li},
title = {RPdb: a database of experimentally verified cellular reprogramming
records},
journal = {Bioinform.},
volume = {31},
number = {19},
pages = {3237--3239},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv331},
doi = {10.1093/BIOINFORMATICS/BTV331},
timestamp = {Mon, 16 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShenGWL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShenRPGECMBJ15,
author = {Ying Shen and
Mumtahena Rahman and
Stephen R. Piccolo and
Daniel Gusenleitner and
Nader N. El{-}Chaar and
Luis Cheng and
Stefano Monti and
Andrea H. Bild and
W. Evan Johnson},
title = {{ASSIGN:} context-specific genomic profiling of multiple heterogeneous
biological pathways},
journal = {Bioinform.},
volume = {31},
number = {11},
pages = {1745--1753},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv031},
doi = {10.1093/BIOINFORMATICS/BTV031},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShenRPGECMBJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShenWYSMZZ15,
author = {Wenlong Shen and
Dong Wang and
Bingyu Ye and
Minglei Shi and
Lei Ma and
Yan Zhang and
Zhihu Zhao},
title = {GC3-biased gene domains in mammalian genomes},
journal = {Bioinform.},
volume = {31},
number = {19},
pages = {3081--3084},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv329},
doi = {10.1093/BIOINFORMATICS/BTV329},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShenWYSMZZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShiBCSHCWX15,
author = {Xu Shi and
Robert O. Barnes and
Li Chen and
Ayesha N. Shajahan{-}Haq and
Leena Hilakivi{-}Clarke and
Robert Clarke and
Yue Joseph Wang and
Jianhua Xuan},
title = {BMRF-Net: a software tool for identification of protein interaction
subnetworks by a bagging Markov random field-based method},
journal = {Bioinform.},
volume = {31},
number = {14},
pages = {2412--2414},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv137},
doi = {10.1093/BIOINFORMATICS/BTV137},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShiBCSHCWX15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShiCJ15,
author = {Yang Shi and
Arul M. Chinnaiyan and
Hui Jiang},
title = {rSeqNP: a non-parametric approach for detecting differential expression
and splicing from RNA-Seq data},
journal = {Bioinform.},
volume = {31},
number = {13},
pages = {2222--2224},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv119},
doi = {10.1093/BIOINFORMATICS/BTV119},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShiCJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShiPL15,
author = {Huwenbo Shi and
Bogdan Pasaniuc and
Kenneth L. Lange},
title = {A multivariate Bernoulli model to predict DNaseI hypersensitivity
status from haplotype data},
journal = {Bioinform.},
volume = {31},
number = {21},
pages = {3514--3521},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv397},
doi = {10.1093/BIOINFORMATICS/BTV397},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShiPL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShiPYZLLKY15,
author = {Xinyi Shi and
Jing Peng and
Xiaohan Yu and
Xiaohong Zhang and
Dongye Li and
Baohui Liu and
Fanjiang Kong and
Xiaohui Yuan},
title = {PopGeV: a web-based large-scale population genome browser},
journal = {Bioinform.},
volume = {31},
number = {18},
pages = {3048--3050},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv324},
doi = {10.1093/BIOINFORMATICS/BTV324},
timestamp = {Wed, 22 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShiPYZLLKY15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShiZHXM15,
author = {Xingjie Shi and
Qing Zhao and
Jian Huang and
Yang Xie and
Shuangge Ma},
title = {Deciphering the associations between gene expression and copy number
alteration using a sparse double Laplacian shrinkage approach},
journal = {Bioinform.},
volume = {31},
number = {24},
pages = {3977--3983},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv518},
doi = {10.1093/BIOINFORMATICS/BTV518},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShiZHXM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShidhiSNNSD15,
author = {P. R. Shidhi and
Prashanth Suravajhala and
Aysha Nayeema and
Achuthsankar S. Nair and
Shailja Singh and
Pawan K. Dhar},
title = {Making novel proteins from pseudogenes},
journal = {Bioinform.},
volume = {31},
number = {1},
pages = {33--39},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu615},
doi = {10.1093/BIOINFORMATICS/BTU615},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShidhiSNNSD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShihabRGMCDGC15,
author = {Hashem A. Shihab and
Mark F. Rogers and
Julian Gough and
Matthew E. Mort and
David N. Cooper and
Ian N. M. Day and
Tom R. Gaunt and
Colin Campbell},
title = {An integrative approach to predicting the functional effects of non-coding
and coding sequence variation},
journal = {Bioinform.},
volume = {31},
number = {10},
pages = {1536--1543},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv009},
doi = {10.1093/BIOINFORMATICS/BTV009},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShihabRGMCDGC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SillSB15,
author = {Martin Sill and
Maral Saadati and
Axel Benner},
title = {Applying stability selection to consistently estimate sparse principal
components in high-dimensional molecular data},
journal = {Bioinform.},
volume = {31},
number = {16},
pages = {2683--2690},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv197},
doi = {10.1093/BIOINFORMATICS/BTV197},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SillSB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SilvaPCPF15,
author = {Raquel M. Silva and
Diogo Pratas and
Lu{\'{\i}}sa Castro and
Armando J. Pinho and
Paulo Jorge S. G. Ferreira},
title = {Three minimal sequences found in Ebola virus genomes and absent from
human {DNA}},
journal = {Bioinform.},
volume = {31},
number = {15},
pages = {2421--2425},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv189},
doi = {10.1093/BIOINFORMATICS/BTV189},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SilvaPCPF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Silverio-Machado15,
author = {Rita Silv{\'{e}}rio{-}Machado and
Br{\'{a}}ulio Roberto Gon{\c{c}}alves Marinho Couto and
Marcos Augusto dos Santos},
title = {Retrieval of \emph{Enterobacteriaceae} drug targets using singular
value decomposition},
journal = {Bioinform.},
volume = {31},
number = {8},
pages = {1267--1273},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu792},
doi = {10.1093/BIOINFORMATICS/BTU792},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Silverio-Machado15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SimaoWIKZ15,
author = {Felipe A. Sim{\~{a}}o and
Robert M. Waterhouse and
Panagiotis Ioannidis and
Evgenia V. Kriventseva and
Evgeny M. Zdobnov},
title = {{BUSCO:} assessing genome assembly and annotation completeness with
single-copy orthologs},
journal = {Bioinform.},
volume = {31},
number = {19},
pages = {3210--3212},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv351},
doi = {10.1093/BIOINFORMATICS/BTV351},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SimaoWIKZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SimhaBKS15,
author = {Ramanuja Simha and
Sebastian Briesemeister and
Oliver Kohlbacher and
Hagit Shatkay},
title = {Protein (multi-)location prediction: utilizing interdependencies via
a generative model},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {365--374},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv264},
doi = {10.1093/BIOINFORMATICS/BTV264},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SimhaBKS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SimmHK15,
author = {Dominic Simm and
Klas Hatje and
Martin Kollmar},
title = {Waggawagga: comparative visualization of coiled-coil predictions and
detection of stable single {\(\alpha\)}-helices {(SAH} domains)},
journal = {Bioinform.},
volume = {31},
number = {5},
pages = {767--769},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu700},
doi = {10.1093/BIOINFORMATICS/BTU700},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SimmHK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SkumsAGRMCDZK15,
author = {Pavel Skums and
Alexander Artyomenko and
Olga Glebova and
Sumathi Ramachandran and
Ion I. Mandoiu and
David S. Campo and
Zoya Dimitrova and
Alex Zelikovsky and
Yuri Khudyakov},
title = {Computational framework for next-generation sequencing of heterogeneous
viral populations using combinatorial pooling},
journal = {Bioinform.},
volume = {31},
number = {5},
pages = {682--690},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu726},
doi = {10.1093/BIOINFORMATICS/BTU726},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SkumsAGRMCDZK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SluisDLSSPL15,
author = {Sophie Van der Sluis and
Conor V. Dolan and
Jiang Li and
You{-}Qiang Song and
Pak Chung Sham and
Danielle Posthuma and
Miao{-}Xin Li},
title = {{MGAS:} a powerful tool for multivariate gene-based genome-wide association
analysis},
journal = {Bioinform.},
volume = {31},
number = {7},
pages = {1007--1015},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu783},
doi = {10.1093/BIOINFORMATICS/BTU783},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SluisDLSSPL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SmaouiOW15,
author = {Mohamed Raef Smaoui and
Henri Orland and
J{\'{e}}r{\^{o}}me Waldisp{\"{u}}hl},
title = {Probing the binding affinity of amyloids to reduce toxicity of oligomers
in diabetes},
journal = {Bioinform.},
volume = {31},
number = {14},
pages = {2294--2302},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv143},
doi = {10.1093/BIOINFORMATICS/BTV143},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SmaouiOW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SmithP15,
author = {Robert Smith and
John T. Prince},
title = {{JAMSS:} proteomics mass spectrometry simulation in Java},
journal = {Bioinform.},
volume = {31},
number = {5},
pages = {791--793},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu729},
doi = {10.1093/BIOINFORMATICS/BTU729},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SmithP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SohnDA15,
author = {Michael B. Sohn and
Ruofei Du and
Lingling An},
title = {A robust approach for identifying differentially abundant features
in metagenomic samples},
journal = {Bioinform.},
volume = {31},
number = {14},
pages = {2269--2275},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv165},
doi = {10.1093/BIOINFORMATICS/BTV165},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SohnDA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SohnHDJPK15,
author = {Kyung{-}Ah Sohn and
Joshua Wing Kei Ho and
Djordje Djordjevic and
Hyun{-}hwan Jeong and
Peter J. Park and
Ju Han Kim},
title = {hiHMM: Bayesian non-parametric joint inference of chromatin state
maps},
journal = {Bioinform.},
volume = {31},
number = {13},
pages = {2066--2074},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv117},
doi = {10.1093/BIOINFORMATICS/BTV117},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SohnHDJPK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SomogyiBGKMSS15,
author = {Endre T. Somogyi and
Jean{-}Marie Bouteiller and
James A. Glazier and
Matthias K{\"{o}}nig and
J. Kyle Medley and
Maciej H. Swat and
Herbert M. Sauro},
title = {libRoadRunner: a high performance {SBML} simulation and analysis library},
journal = {Bioinform.},
volume = {31},
number = {20},
pages = {3315--3321},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv363},
doi = {10.1093/BIOINFORMATICS/BTV363},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SomogyiBGKMSS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SpeicherP15,
author = {Nora K. Speicher and
Nico Pfeifer},
title = {Integrating different data types by regularized unsupervised multiple
kernel learning with application to cancer subtype discovery},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {268--275},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv244},
doi = {10.1093/BIOINFORMATICS/BTV244},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SpeicherP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SpiesZSS15,
author = {Noah Spies and
Justin M. Zook and
Marc Salit and
Arend Sidow},
title = {svviz: a read viewer for validating structural variants},
journal = {Bioinform.},
volume = {31},
number = {24},
pages = {3994--3996},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv478},
doi = {10.1093/BIOINFORMATICS/BTV478},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SpiesZSS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StaabZML15,
author = {Paul R. Staab and
Sha Zhu and
Dirk Metzler and
Gerton Lunter},
title = {scrm: efficiently simulating long sequences using the approximated
coalescent with recombination},
journal = {Bioinform.},
volume = {31},
number = {10},
pages = {1680--1682},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu861},
doi = {10.1093/BIOINFORMATICS/BTU861},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/StaabZML15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StatonB15,
author = {S. Evan Staton and
John M. Burke},
title = {Transposome: a toolkit for annotation of transposable element families
from unassembled sequence reads},
journal = {Bioinform.},
volume = {31},
number = {11},
pages = {1827--1829},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv059},
doi = {10.1093/BIOINFORMATICS/BTV059},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/StatonB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SteinfeldNCYT15,
author = {Israel Steinfeld and
Roy Navon and
Michael L. Creech and
Zohar Yakhini and
Anya Tsalenko},
title = {ENViz: a Cytoscape App for integrated statistical analysis and visualization
of sample-matched data with multiple data types},
journal = {Bioinform.},
volume = {31},
number = {10},
pages = {1683--1685},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu853},
doi = {10.1093/BIOINFORMATICS/BTU853},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SteinfeldNCYT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SteuernagelJWJW15,
author = {Burkhard Steuernagel and
Florian Jupe and
Kamil Witek and
Jonathan D. G. Jones and
Brande B. H. Wulff},
title = {NLR-parser: rapid annotation of plant {NLR} complements},
journal = {Bioinform.},
volume = {31},
number = {10},
pages = {1665--1667},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv005},
doi = {10.1093/BIOINFORMATICS/BTV005},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SteuernagelJWJW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StramMC15,
author = {Alex H. Stram and
Paul Marjoram and
Gary K. Chen},
title = {\emph{al3c}: high-performance software for parameter inference using
Approximate Bayesian Computation},
journal = {Bioinform.},
volume = {31},
number = {21},
pages = {3549--3551},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv393},
doi = {10.1093/BIOINFORMATICS/BTV393},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/StramMC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StrbenacMOY15,
author = {Dario Strbenac and
Graham J. Mann and
John T. Ormerod and
Jean Yee Hwa Yang},
title = {ClassifyR: an {R} package for performance assessment of classification
with applications to transcriptomics},
journal = {Bioinform.},
volume = {31},
number = {11},
pages = {1851--1853},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv066},
doi = {10.1093/BIOINFORMATICS/BTV066},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/StrbenacMOY15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Subramanian15,
author = {Sankar Subramanian},
title = {Using the plurality of codon positions to identify deleterious variants
in human exomes},
journal = {Bioinform.},
volume = {31},
number = {3},
pages = {301--305},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu653},
doi = {10.1093/BIOINFORMATICS/BTU653},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Subramanian15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SummerKORHD15,
author = {Georg Summer and
Thomas Kelder and
Keiichiro Ono and
Marijana Radonjic and
Stephane Heymans and
Barry Demchak},
title = {cyNeo4j: connecting Neo4j and Cytoscape},
journal = {Bioinform.},
volume = {31},
number = {23},
pages = {3868--3869},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv460},
doi = {10.1093/BIOINFORMATICS/BTV460},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SummerKORHD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SundstromZGM15,
author = {G{\"{o}}rel Sundstr{\"{o}}m and
Neda Zamani and
Manfred G. Grabherr and
Evan Mauceli},
title = {\emph{Whiteboard}: a framework for the programmatic visualization
of complex biological analyses},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {2054--2055},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv078},
doi = {10.1093/BIOINFORMATICS/BTV078},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SundstromZGM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SuoHLPSJCP15,
author = {Chen Suo and
Olga Hrydziuszko and
Donghwan Lee and
Setia Pramana and
Dhany Saputra and
Himanshu Joshi and
Stefano Calza and
Yudi Pawitan},
title = {Integration of somatic mutation, expression and functional data reveals
potential driver genes predictive of breast cancer survival},
journal = {Bioinform.},
volume = {31},
number = {16},
pages = {2607--2613},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv164},
doi = {10.1093/BIOINFORMATICS/BTV164},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SuoHLPSJCP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SuzekWHMW15,
author = {Baris E. Suzek and
Yuqi Wang and
Hongzhan Huang and
Peter B. McGarvey and
Cathy H. Wu},
title = {UniRef clusters: a comprehensive and scalable alternative for improving
sequence similarity searches},
journal = {Bioinform.},
volume = {31},
number = {6},
pages = {926--932},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu739},
doi = {10.1093/BIOINFORMATICS/BTU739},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SuzekWHMW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SuzukiKIA15,
author = {Shuji Suzuki and
Masanori Kakuta and
Takashi Ishida and
Yutaka Akiyama},
title = {Faster sequence homology searches by clustering subsequences},
journal = {Bioinform.},
volume = {31},
number = {8},
pages = {1183--1190},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu780},
doi = {10.1093/BIOINFORMATICS/BTU780},
timestamp = {Mon, 21 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SuzukiKIA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TanAK15,
author = {Adrian Tan and
Gon{\c{c}}alo R. Abecasis and
Hyun Min Kang},
title = {Unified representation of genetic variants},
journal = {Bioinform.},
volume = {31},
number = {13},
pages = {2202--2204},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv112},
doi = {10.1093/BIOINFORMATICS/BTV112},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TanAK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TanakaSI15,
author = {Simon Tanaka and
David Sichau and
Dagmar Iber},
title = {LBIBCell: a cell-based simulation environment for morphogenetic problems},
journal = {Bioinform.},
volume = {31},
number = {14},
pages = {2340--2347},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv147},
doi = {10.1093/BIOINFORMATICS/BTV147},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TanakaSI15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TangBKDNBA15,
author = {Yin Tang and
Emil Bouvier and
Chun Kit Kwok and
Yiliang Ding and
Anton Nekrutenko and
Philip C. Bevilacqua and
Sarah M. Assmann},
title = {StructureFold: genome-wide {RNA} secondary structure mapping and reconstruction
\emph{in vivo}},
journal = {Bioinform.},
volume = {31},
number = {16},
pages = {2668--2675},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv213},
doi = {10.1093/BIOINFORMATICS/BTV213},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TangBKDNBA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TangWLZL15,
author = {Ke Tang and
Samuel W. K. Wong and
Jun S. Liu and
Jinfeng Zhang and
Jie Liang},
title = {Conformational sampling and structure prediction of multiple interacting
loops in soluble and \emph{{\(\beta\)}}-barrel membrane proteins using
multi-loop distance-guided chain-growth Monte Carlo method},
journal = {Bioinform.},
volume = {31},
number = {16},
pages = {2646--2652},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv198},
doi = {10.1093/BIOINFORMATICS/BTV198},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TangWLZL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TarasovVCNP15,
author = {Artem Tarasov and
Albert J. Vilella and
Edwin Cuppen and
Isaac J. Nijman and
Pjotr Prins},
title = {Sambamba: fast processing of {NGS} alignment formats},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {2032--2034},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv098},
doi = {10.1093/BIOINFORMATICS/BTV098},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TarasovVCNP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TarragaPODMD15,
author = {Joaqu{\'{\i}}n T{\'{a}}rraga and
Mariano P{\'{e}}rez and
Juan M. Ordu{\~{n}}a and
Jos{\'{e}} Duato and
Ignacio Medina and
Joaqu{\'{\i}}n Dopazo},
title = {A parallel and sensitive software tool for methylation analysis on
multicore platforms},
journal = {Bioinform.},
volume = {31},
number = {19},
pages = {3130--3138},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv357},
doi = {10.1093/BIOINFORMATICS/BTV357},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TarragaPODMD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TaruttisSE15,
author = {Franziska Taruttis and
Rainer Spang and
Julia C. Engelmann},
title = {A statistical approach to virtual cellular experiments: improved causal
discovery using accumulation {IDA} (aIDA)},
journal = {Bioinform.},
volume = {31},
number = {23},
pages = {3807--3814},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv461},
doi = {10.1093/BIOINFORMATICS/BTV461},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TaruttisSE15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TaylorMMPDP15,
author = {Ryan M. Taylor and
Ryan H. Miller and
Ryan D. Miller and
Michael Porter and
James Dalgleish and
John T. Prince},
title = {Automated structural classification of lipids by machine learning},
journal = {Bioinform.},
volume = {31},
number = {5},
pages = {621--625},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu723},
doi = {10.1093/BIOINFORMATICS/BTU723},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TaylorMMPDP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TaylorSAW15,
author = {Avigail Taylor and
Julia Steinberg and
Tallulah S. Andrews and
Caleb Webber},
title = {GeneNet Toolbox for {MATLAB:} a flexible platform for the analysis
of gene connectivity in biological networks},
journal = {Bioinform.},
volume = {31},
number = {3},
pages = {442--444},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu669},
doi = {10.1093/BIOINFORMATICS/BTU669},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TaylorSAW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TelemanRRSMML15,
author = {Johan Teleman and
Hannes L. R{\"{o}}st and
George Rosenberger and
Uwe Schmitt and
Lars Malmstr{\"{o}}m and
Johan Malmstr{\"{o}}m and
Fredrik Levander},
title = {{DIANA} - algorithmic improvements for analysis of data-independent
acquisition {MS} data},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {555--562},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu686},
doi = {10.1093/BIOINFORMATICS/BTU686},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TelemanRRSMML15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TengHWT15,
author = {Li Teng and
Bing He and
Jiahui Wang and
Kai Tan},
title = {4DGenome: a comprehensive database of chromatin interactions},
journal = {Bioinform.},
volume = {31},
number = {15},
pages = {2560--2564},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv158},
doi = {10.1093/BIOINFORMATICS/BTV158},
timestamp = {Wed, 09 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TengHWT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TerraponLGH15,
author = {Nicolas Terrapon and
Vincent Lombard and
Harry J. Gilbert and
Bernard Henrissat},
title = {Automatic prediction of polysaccharide utilization loci in Bacteroidetes
species},
journal = {Bioinform.},
volume = {31},
number = {5},
pages = {647--655},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu716},
doi = {10.1093/BIOINFORMATICS/BTU716},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TerraponLGH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ThomasDSKWSMTBL15,
author = {Philippe Thomas and
Pawel Durek and
Ill{\'{e}}s Solt and
Bertram Klinger and
Franziska Witzel and
Pascal Schulthess and
Yvonne Mayer and
Domonkos Tikk and
Nils Bl{\"{u}}thgen and
Ulf Leser},
title = {Computer-assisted curation of a human regulatory core network from
the biological literature},
journal = {Bioinform.},
volume = {31},
number = {8},
pages = {1258--1266},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu795},
doi = {10.1093/BIOINFORMATICS/BTU795},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ThomasDSKWSMTBL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TianZHCZSXHW15,
author = {Ye Tian and
Bai Zhang and
Eric P. Hoffman and
Robert Clarke and
Zhen Zhang and
Ie{-}Ming Shih and
Jianhua Xuan and
David M. Herrington and
Yue Joseph Wang},
title = {{KDDN:} an open-source Cytoscape app for constructing differential
dependency networks with significant rewiring},
journal = {Bioinform.},
volume = {31},
number = {2},
pages = {287--289},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu632},
doi = {10.1093/BIOINFORMATICS/BTU632},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TianZHCZSXHW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TobalinaBPHLRBP15,
author = {Luis Tobalina and
Rafael Bargiela and
Jon Pey and
Florian{-}Alexander Herbst and
Iv{\'{a}}n Lores and
David Rojo and
Coral Barbas and
Ana I. Pel{\'{a}}ez and
Jes{\'{u}}s S{\'{a}}nchez and
Martin von Bergen and
Jana Seifert and
Manuel Ferrer and
Francisco J. Planes},
title = {Context-specific metabolic network reconstruction of a naphthalene-degrading
bacterial community guided by metaproteomic data},
journal = {Bioinform.},
volume = {31},
number = {11},
pages = {1771--1779},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv036},
doi = {10.1093/BIOINFORMATICS/BTV036},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TobalinaBPHLRBP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TongCJBDLLH015,
author = {Pan Tong and
Kevin R. Coombes and
Faye M. Johnson and
Lauren A. Byers and
Lixia Diao and
Diane D. Liu and
J. Jack Lee and
John V. Heymach and
Jing Wang},
title = {drexplorer: {A} tool to explore dose-response relationships and drug-drug
interactions},
journal = {Bioinform.},
volume = {31},
number = {10},
pages = {1692--1694},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv028},
doi = {10.1093/BIOINFORMATICS/BTV028},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TongCJBDLLH015.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TopaJKKH15,
author = {Hande Topa and
{\'{A}}gnes J{\'{o}}n{\'{a}}s and
Robert Kofler and
Carolin Kosiol and
Antti Honkela},
title = {Gaussian process test for high-throughput sequencing time series:
application to experimental evolution},
journal = {Bioinform.},
volume = {31},
number = {11},
pages = {1762--1770},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv014},
doi = {10.1093/BIOINFORMATICS/BTV014},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TopaJKKH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Trejo-BanosMS15,
author = {Daniel Trejo{-}Ba{\~{n}}os and
Andrew J. Millar and
Guido Sanguinetti},
title = {A Bayesian approach for structure learning in oscillating regulatory
networks},
journal = {Bioinform.},
volume = {31},
number = {22},
pages = {3617--3624},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv414},
doi = {10.1093/BIOINFORMATICS/BTV414},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Trejo-BanosMS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TrolleMGKSLSPN15,
author = {Thomas Trolle and
Imir G. Metushi and
Jason A. Greenbaum and
Yohan Kim and
John Sidney and
Ole Lund and
Alessandro Sette and
Bjoern Peters and
Morten Nielsen},
title = {Automated benchmarking of peptide-MHC class {I} binding predictions},
journal = {Bioinform.},
volume = {31},
number = {13},
pages = {2174--2181},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv123},
doi = {10.1093/BIOINFORMATICS/BTV123},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TrolleMGKSLSPN15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TrubetskoyRDCCCSFMCD15,
author = {Vassily Trubetskoy and
Alex A. Rodriguez and
Uptal J. Dave and
Nicholas Campbell and
Emily L. Crawford and
Edwin H. Cook Jr. and
James S. Sutcliffe and
Ian T. Foster and
Ravi K. Madduri and
Nancy J. Cox and
Lea K. Davis},
title = {Consensus Genotyper for Exome Sequencing {(CGES):} improving the quality
of exome variant genotypes},
journal = {Bioinform.},
volume = {31},
number = {2},
pages = {187--193},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu591},
doi = {10.1093/BIOINFORMATICS/BTU591},
timestamp = {Tue, 23 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TrubetskoyRDCCCSFMCD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TsaiCHHW15,
author = {Meng{-}Hsiun Tsai and
Mu{-}Yen Chen and
Steve G. Huang and
Yao{-}Ching Hung and
Hsin{-}Chieh Wang},
title = {A bio-inspired computing model for ovarian carcinoma classification
and oncogene detection},
journal = {Bioinform.},
volume = {31},
number = {7},
pages = {1102--1110},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu782},
doi = {10.1093/BIOINFORMATICS/BTU782},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TsaiCHHW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TsoiEA15,
author = {Lam C. Tsoi and
James T. Elder and
Gon{\c{c}}alo R. Abecasis},
title = {Graphical algorithm for integration of genetic and biological data:
proof of principle using psoriasis as a model},
journal = {Bioinform.},
volume = {31},
number = {8},
pages = {1243--1249},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu799},
doi = {10.1093/BIOINFORMATICS/BTU799},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TsoiEA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TsukuiNUKTMA15,
author = {Takahiro Tsukui and
Nozomi Nagano and
Myco Umemura and
Toshitaka Kumagai and
Goro Terai and
Masayuki Machida and
Kiyoshi Asai},
title = {Ustiloxins, fungal cyclic peptides, are ribosomally synthesized in
\emph{Ustilaginoidea virens}},
journal = {Bioinform.},
volume = {31},
number = {7},
pages = {981--985},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu753},
doi = {10.1093/BIOINFORMATICS/BTU753},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TsukuiNUKTMA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VaitsiakhovichDHLB15,
author = {Tatsiana Vaitsiakhovich and
Dmitriy Drichel and
Christine Herold and
Andr{\'{e}} Lacour and
Tim Becker},
title = {{METAINTER:} meta-analysis of multiple regression models in genome-wide
association studies},
journal = {Bioinform.},
volume = {31},
number = {2},
pages = {151--157},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu629},
doi = {10.1093/BIOINFORMATICS/BTU629},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VaitsiakhovichDHLB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VasilinetcPGKP15,
author = {Irina Vasilinetc and
Andrey D. Prjibelski and
Alexey A. Gurevich and
Anton I. Korobeynikov and
Pavel A. Pevzner},
title = {Assembling short reads from jumping libraries with large insert sizes},
journal = {Bioinform.},
volume = {31},
number = {20},
pages = {3262--3268},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv337},
doi = {10.1093/BIOINFORMATICS/BTV337},
timestamp = {Wed, 04 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VasilinetcPGKP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VazquezVP15,
author = {Miguel Vazquez and
Alfonso Valencia and
Tirso Pons},
title = {Structure-PPi: a module for the annotation of cancer-related single-nucleotide
variants at protein-protein interfaces},
journal = {Bioinform.},
volume = {31},
number = {14},
pages = {2397--2399},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv142},
doi = {10.1093/BIOINFORMATICS/BTV142},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VazquezVP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VerbistTRWBTACT15,
author = {Bie M. P. Verbist and
Kim Thys and
Joke Reumers and
Yves Wetzels and
Koen Van der Borght and
Willem Talloen and
Jeroen Aerssens and
Lieven Clement and
Olivier Thas},
title = {VirVarSeq: a low-frequency virus variant detection pipeline for Illumina
sequencing using adaptive base-calling accuracy filtering},
journal = {Bioinform.},
volume = {31},
number = {1},
pages = {94--101},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu587},
doi = {10.1093/BIOINFORMATICS/BTU587},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VerbistTRWBTACT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VergoulisKKGSHD15,
author = {Thanasis Vergoulis and
Ilias Kanellos and
Nikos Kostoulas and
Georgios K. Georgakilas and
Timos K. Sellis and
Artemis G. Hatzigeorgiou and
Theodore Dalamagas},
title = {mirPub: a database for searching microRNA publications},
journal = {Bioinform.},
volume = {31},
number = {9},
pages = {1502--1504},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu819},
doi = {10.1093/BIOINFORMATICS/BTU819},
timestamp = {Fri, 07 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/VergoulisKKGSHD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VerleyenBG15,
author = {Wim Verleyen and
Sara Ballouz and
Jesse A. Gillis},
title = {Measuring the wisdom of the crowds in network-based gene function
inference},
journal = {Bioinform.},
volume = {31},
number = {5},
pages = {745--752},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu715},
doi = {10.1093/BIOINFORMATICS/BTU715},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VerleyenBG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VerspoorSHBV15,
author = {Karin Verspoor and
Hagit Shatkay and
Lynette Hirschman and
Christian Blaschke and
Alfonso Valencia},
title = {Summary of the BioLINK {SIG} 2013 meeting at {ISMB/ECCB} 2013},
journal = {Bioinform.},
volume = {31},
number = {2},
pages = {297--298},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu412},
doi = {10.1093/BIOINFORMATICS/BTU412},
timestamp = {Thu, 17 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VerspoorSHBV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VijayanSM15,
author = {Vipin Vijayan and
Vikram Saraph and
Tijana Milenkovic},
title = {{MAGNA++:} Maximizing Accuracy in Global Network Alignment via both
node and edge conservation},
journal = {Bioinform.},
volume = {31},
number = {14},
pages = {2409--2411},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv161},
doi = {10.1093/BIOINFORMATICS/BTV161},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VijayanSM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VisVTKL15,
author = {Jonathan K. Vis and
Martijn Vermaat and
Peter E. M. Taschner and
Joost N. Kok and
Jeroen F. J. Laros},
title = {An efficient algorithm for the extraction of {HGVS} variant descriptions
from sequences},
journal = {Bioinform.},
volume = {31},
number = {23},
pages = {3751--3757},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv443},
doi = {10.1093/BIOINFORMATICS/BTV443},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/VisVTKL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VitsiosE15,
author = {Dimitrios M. Vitsios and
Anton J. Enright},
title = {Chimira: analysis of small {RNA} sequencing data and microRNA modifications},
journal = {Bioinform.},
volume = {31},
number = {20},
pages = {3365--3367},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv380},
doi = {10.1093/BIOINFORMATICS/BTV380},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VitsiosE15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VlasblomZRAGDKLRSCPGGHEMBB15,
author = {James Vlasblom and
Khalid Zuberi and
Harold Rodriguez and
Roland Arnold and
Alla Gagarinova and
Viktor Deineko and
Ashwani Kumar and
Elisa Leung and
Kamran Rizzolo and
Bahram Samanfar and
Luke Chang and
Sadhna Phanse and
Ashkan Golshani and
Jack Greenblatt and
Walid A. Houry and
Andrew Emili and
Quaid Morris and
Gary D. Bader and
Mohan Babu},
title = {Novel function discovery with GeneMANIA: a new integrated resource
for gene function prediction in \emph{Escherichia coli}},
journal = {Bioinform.},
volume = {31},
number = {3},
pages = {306--310},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu671},
doi = {10.1093/BIOINFORMATICS/BTU671},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/VlasblomZRAGDKLRSCPGGHEMBB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VolkelLSKK15,
author = {Gunnar V{\"{o}}lkel and
Ludwig Lausser and
Florian Schmid and
Johann M. Kraus and
Hans A. Kestler},
title = {Sputnik: \emph{ad hoc} distributed computation},
journal = {Bioinform.},
volume = {31},
number = {8},
pages = {1298--1301},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu818},
doi = {10.1093/BIOINFORMATICS/BTU818},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/VolkelLSKK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VuckovicGSI15,
author = {Dragana Vuckovic and
Paolo Gasparini and
Nicole Soranzo and
Valentina Iotchkova},
title = {MultiMeta: an {R} package for meta-analyzing multi-phenotype genome-wide
association studies},
journal = {Bioinform.},
volume = {31},
number = {16},
pages = {2754--2756},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv222},
doi = {10.1093/BIOINFORMATICS/BTV222},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/VuckovicGSI15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VuongCRLCM15,
author = {Hue Vuong and
Anney Che and
Sarangan Ravichandran and
Brian T. Luke and
Jack R. Collins and
Uma S. Mudunuri},
title = {{AVIA} v2.0: annotation, visualization and impact analysis of genomic
variants and genes},
journal = {Bioinform.},
volume = {31},
number = {16},
pages = {2748--2750},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv200},
doi = {10.1093/BIOINFORMATICS/BTV200},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VuongCRLCM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WachterB15,
author = {Astrid Wachter and
Tim Bei{\ss}barth},
title = {pwOmics: an {R} package for pathway-based integration of time-series
omics data using public database knowledge},
journal = {Bioinform.},
volume = {31},
number = {18},
pages = {3072--3074},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv323},
doi = {10.1093/BIOINFORMATICS/BTV323},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WachterB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WalshGDFZT15,
author = {Ian Walsh and
Manuel Giollo and
Tom{\'{a}}s Di Domenico and
Carlo Ferrari and
Olav Zimmermann and
Silvio C. E. Tosatto},
title = {Comprehensive large-scale assessment of intrinsic protein disorder},
journal = {Bioinform.},
volume = {31},
number = {2},
pages = {201--208},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu625},
doi = {10.1093/BIOINFORMATICS/BTU625},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WalshGDFZT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WalterSR15,
author = {Wencke Walter and
F{\'{a}}tima S{\'{a}}nchez{-}Cabo and
Mercedes Ricote},
title = {GOplot: an {R} package for visually combining expression data with
functional analysis},
journal = {Bioinform.},
volume = {31},
number = {17},
pages = {2912--2914},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv300},
doi = {10.1093/BIOINFORMATICS/BTV300},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WalterSR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WandyDBR15,
author = {Joe Wandy and
R{\'{o}}n{\'{a}}n Daly and
Rainer Breitling and
Simon Rogers},
title = {Incorporating peak grouping information for alignment of multiple
liquid chromatography-mass spectrometry datasets},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {1999--2006},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv072},
doi = {10.1093/BIOINFORMATICS/BTV072},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WandyDBR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangCY15,
author = {Bin Wang and
John M. Cunningham and
Xinan Holly Yang},
title = {Seq2pathway: an R/Bioconductor package for pathway analysis of next-generation
sequencing data},
journal = {Bioinform.},
volume = {31},
number = {18},
pages = {3043--3045},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv289},
doi = {10.1093/BIOINFORMATICS/BTV289},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangCY15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangCZB015,
author = {Sheng Wang and
Hyunghoon Cho and
ChengXiang Zhai and
Bonnie Berger and
Jian Peng},
title = {Exploiting ontology graph for predicting sparsely annotated gene function},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {357--364},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv260},
doi = {10.1093/BIOINFORMATICS/BTV260},
timestamp = {Thu, 07 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangCZB015.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangGCCSZLXW15,
author = {Niya Wang and
Ting Gong and
Robert Clarke and
Lulu Chen and
Ie{-}Ming Shih and
Zhen Zhang and
Douglas A. Levine and
Jianhua Xuan and
Yue Joseph Wang},
title = {{UNDO:} a Bioconductor {R} package for unsupervised deconvolution
of mixed gene expressions in tumor samples},
journal = {Bioinform.},
volume = {31},
number = {1},
pages = {137--139},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu607},
doi = {10.1093/BIOINFORMATICS/BTU607},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangGCCSZLXW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangMMMB15,
author = {Lili Wang and
Takuya Matsushita and
Lohith Madireddy and
Parvin Mousavi and
Sergio Baranzini},
title = {{PINBPA:} Cytoscape app for network analysis of {GWAS} data},
journal = {Bioinform.},
volume = {31},
number = {2},
pages = {262--264},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu644},
doi = {10.1093/BIOINFORMATICS/BTU644},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangMMMB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangNK15,
author = {Liguo Wang and
Jinfu J. Nie and
Jean{-}Pierre A. Kocher},
title = {{PVAAS:} identify variants associated with aberrant splicing from
RNA-seq},
journal = {Bioinform.},
volume = {31},
number = {10},
pages = {1668--1670},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv001},
doi = {10.1093/BIOINFORMATICS/BTV001},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangNK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangRSSG15,
author = {Jing Wang and
Leon Raskin and
David C. Samuels and
Yu Shyr and
Yan Guo},
title = {Genome measures used for quality control are dependent on gene function
and ancestry},
journal = {Bioinform.},
volume = {31},
number = {3},
pages = {318--323},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu668},
doi = {10.1093/BIOINFORMATICS/BTU668},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangRSSG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangSZQGLZLLG15,
author = {Hongwei Wang and
Qiang Sun and
Wenyuan Zhao and
Lishuang Qi and
Yunyan Gu and
Pengfei Li and
Mengmeng Zhang and
Yang Li and
Shu{-}Lin Liu and
Zheng Guo},
title = {Individual-level analysis of differential expression of genes and
pathways for personalized medicine},
journal = {Bioinform.},
volume = {31},
number = {1},
pages = {62--68},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu522},
doi = {10.1093/BIOINFORMATICS/BTU522},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangSZQGLZLLG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangXL15,
author = {Zixing Wang and
Wenlong Xu and
Yin Liu},
title = {Integrating full spectrum of sequence features into predicting functional
microRNA-mRNA interactions},
journal = {Bioinform.},
volume = {31},
number = {21},
pages = {3529--3536},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv392},
doi = {10.1093/BIOINFORMATICS/BTV392},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangXL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangYM15,
author = {Zi Wang and
Wei Yuan and
Giovanni Montana},
title = {Sparse multi-view matrix factorization: a multivariate approach to
multiple tissue comparisons},
journal = {Bioinform.},
volume = {31},
number = {19},
pages = {3163--3171},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv344},
doi = {10.1093/BIOINFORMATICS/BTV344},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangYM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangYZJ15,
author = {Quan Wang and
Hui Yu and
Zhongming Zhao and
Peilin Jia},
title = {EW{\_}dmGWAS: edge-weighted dense module search for genome-wide association
studies and gene expression profiles},
journal = {Bioinform.},
volume = {31},
number = {15},
pages = {2591--2594},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv150},
doi = {10.1093/BIOINFORMATICS/BTV150},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangYZJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangYZMAPDLW15,
author = {Xuefeng Wang and
Xiaoqing Yu and
Wei Zhu and
W. Richard McCombie and
Eric Antoniou and
R. Scott Powers and
Nicholas O. Davidson and
Ellen Li and
Jennie Williams},
title = {A trimming-and-retrieving alignment scheme for reduced representation
bisulfite sequencing},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {2040--2042},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv089},
doi = {10.1093/BIOINFORMATICS/BTV089},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangYZMAPDLW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangZZ15,
author = {Hong{-}Qiang Wang and
Chun{-}Hou Zheng and
Xing{-}Ming Zhao},
title = {\emph{j}NMFMA: a joint non-negative matrix factorization meta-analysis
of transcriptomics data},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {572--580},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu679},
doi = {10.1093/BIOINFORMATICS/BTU679},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangZZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangZZL15,
author = {Xiao Wang and
Weiwei Zhang and
Qiuwen Zhang and
Guo{-}Zheng Li},
title = {MultiP-SChlo: multi-label protein subchloroplast localization prediction
with Chou's pseudo amino acid composition and a novel multi-label
classifier},
journal = {Bioinform.},
volume = {31},
number = {16},
pages = {2639--2645},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv212},
doi = {10.1093/BIOINFORMATICS/BTV212},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangZZL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WarrenABDEGHHLM15,
author = {Andrew S. Warren and
Cristina Aurrecoechea and
Brian P. Brunk and
Prerak Desai and
Scott J. Emrich and
Gloria I. Giraldo{-}Calder{\'{o}}n and
Omar S. Harb and
Deborah Hix and
Daniel Lawson and
Dustin Machi and
Chunhong Mao and
Michael McClelland and
Eric K. Nordberg and
Maulik Shukla and
Leslie B. Vosshall and
Alice R. Wattam and
Rebecca Will and
Hyun Seung Yoo and
Bruno W. S. Sobral},
title = {RNA-Rocket: an RNA-Seq analysis resource for infectious disease research},
journal = {Bioinform.},
volume = {31},
number = {9},
pages = {1496--1498},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv002},
doi = {10.1093/BIOINFORMATICS/BTV002},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WarrenABDEGHHLM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WatsonTRTSGB15,
author = {Mick Watson and
Marian Thomson and
Judith E. Risse and
Richard Talbot and
Javier Santoyo{-}Lopez and
Karim Gharbi and
Mark L. Blaxter},
title = {poRe: an {R} package for the visualization and analysis of nanopore
sequencing data},
journal = {Bioinform.},
volume = {31},
number = {1},
pages = {114--115},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu590},
doi = {10.1093/BIOINFORMATICS/BTU590},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WatsonTRTSGB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Weber15,
author = {Gerald Weber},
title = {Optimization method for obtaining nearest-neighbour {DNA} entropies
and enthalpies directly from melting temperatures},
journal = {Bioinform.},
volume = {31},
number = {6},
pages = {871--877},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu751},
doi = {10.1093/BIOINFORMATICS/BTU751},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Weber15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WehrensBE15,
author = {Ron Wehrens and
Tom G. Bloemberg and
Paul H. C. Eilers},
title = {Fast parametric time warping of peak lists},
journal = {Bioinform.},
volume = {31},
number = {18},
pages = {3063--3065},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv299},
doi = {10.1093/BIOINFORMATICS/BTV299},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WehrensBE15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WeiZZLHCL15,
author = {Qiang Wei and
Xiaowei Zhan and
Xue Zhong and
Yongzhuang Liu and
Yujun Han and
Wei Chen and
Bingshan Li},
title = {A Bayesian framework for \emph{de novo} mutation calling in parents-offspring
trios},
journal = {Bioinform.},
volume = {31},
number = {9},
pages = {1375--1381},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu839},
doi = {10.1093/BIOINFORMATICS/BTU839},
timestamp = {Thu, 09 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WeiZZLHCL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WeirickJDU15,
author = {Tyler Weirick and
David John and
Stefanie Dimmeler and
Shizuka Uchida},
title = {C-It-Loci: a knowledge database for tissue-enriched loci},
journal = {Bioinform.},
volume = {31},
number = {21},
pages = {3537--3543},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv410},
doi = {10.1093/BIOINFORMATICS/BTV410},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WeirickJDU15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WeissenbacherTB15,
author = {Davy Weissenbacher and
Tasnia Tahsin and
Rachel Beard and
Mari Figaro and
Robert Rivera and
Matthew Scotch and
Graciela Gonzalez},
title = {Knowledge-driven geospatial location resolution for phylogeographic
models of virus migration},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {348--356},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv259},
doi = {10.1093/BIOINFORMATICS/BTV259},
timestamp = {Wed, 25 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WeissenbacherTB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WestbrookSFZVY15,
author = {John D. Westbrook and
Chenghua Shao and
Zukang Feng and
Marina Zhuravleva and
Sameer Velankar and
Jasmine Young},
title = {The chemical component dictionary: complete descriptions of constituent
molecules in experimentally determined 3D macromolecules in the Protein
Data Bank},
journal = {Bioinform.},
volume = {31},
number = {8},
pages = {1274--1278},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu789},
doi = {10.1093/BIOINFORMATICS/BTU789},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WestbrookSFZVY15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WickSZH15,
author = {Ryan R. Wick and
Mark B. Schultz and
Justin Zobel and
Kathryn E. Holt},
title = {Bandage: interactive visualization of \emph{de novo} genome assemblies},
journal = {Bioinform.},
volume = {31},
number = {20},
pages = {3350--3352},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv383},
doi = {10.1093/BIOINFORMATICS/BTV383},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WickSZH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WijetungeSBSCBR15,
author = {Chalini D. Wijetunge and
Isaam Saeed and
Berin A. Boughton and
Jeffrey M. Spraggins and
Richard M. Caprioli and
Antony Bacic and
Ute Roessner and
Saman K. Halgamuge},
title = {{EXIMS:} an improved data analysis pipeline based on a new peak picking
method for EXploring Imaging Mass Spectrometry data},
journal = {Bioinform.},
volume = {31},
number = {19},
pages = {3198--3206},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv356},
doi = {10.1093/BIOINFORMATICS/BTV356},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WijetungeSBSCBR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WillOMMB15,
author = {Sebastian Will and
Christina Otto and
Milad Miladi and
Mathias M{\"{o}}hl and
Rolf Backofen},
title = {{SPARSE:} quadratic time simultaneous alignment and folding of RNAs
without sequence-based heuristics},
journal = {Bioinform.},
volume = {31},
number = {15},
pages = {2489--2496},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv185},
doi = {10.1093/BIOINFORMATICS/BTV185},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WillOMMB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WilletHCW15,
author = {Cali E. Willet and
Bianca Haase and
Michael A. Charleston and
Claire M. Wade},
title = {Simple, rapid and accurate genotyping-by-sequencing from aligned whole
genomes with ArrayMaker},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {599--601},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu691},
doi = {10.1093/BIOINFORMATICS/BTU691},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WilletHCW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WimalaratneBJKD15,
author = {Sarala M. Wimalaratne and
Jerven T. Bolleman and
Nick S. Juty and
Toshiaki Katayama and
Michel Dumontier and
Nicole Redaschi and
Nicolas Le Nov{\`{e}}re and
Henning Hermjakob and
Camille Laibe},
title = {SPARQL-enabled identifier conversion with Identifiers.org},
journal = {Bioinform.},
volume = {31},
number = {11},
pages = {1875--1877},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv064},
doi = {10.1093/BIOINFORMATICS/BTV064},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WimalaratneBJKD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WinklerKGLKH15,
author = {Thomas W. Winkler and
Zolt{\'{a}}n Kutalik and
Mathias Gorski and
Claudio Lottaz and
Florian Kronenberg and
Iris M. Heid},
title = {EasyStrata: evaluation and visualization of stratified genome-wide
association meta-analysis data},
journal = {Bioinform.},
volume = {31},
number = {2},
pages = {259--261},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu621},
doi = {10.1093/BIOINFORMATICS/BTU621},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WinklerKGLKH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WintersingerW15,
author = {Jeff A. Wintersinger and
James D. Wasmuth},
title = {Kablammo: an interactive, web-based {BLAST} results visualizer},
journal = {Bioinform.},
volume = {31},
number = {8},
pages = {1305--1306},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu808},
doi = {10.1093/BIOINFORMATICS/BTU808},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WintersingerW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WiseB15,
author = {Aaron Wise and
Ziv Bar{-}Joseph},
title = {{SMARTS:} reconstructing disease response networks from multiple individuals
using time series gene expression data},
journal = {Bioinform.},
volume = {31},
number = {8},
pages = {1250--1257},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu800},
doi = {10.1093/BIOINFORMATICS/BTU800},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WiseB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WitteVDBADDVF15,
author = {Dieter De Witte and
Jan Van de Velde and
Dries Decap and
Michiel Van Bel and
Pieter Audenaert and
Piet Demeester and
Bart Dhoedt and
Klaas Vandepoele and
Jan Fostier},
title = {BLSSpeller: exhaustive comparative discovery of conserved \emph{cis}-regulatory
elements},
journal = {Bioinform.},
volume = {31},
number = {23},
pages = {3758--3766},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv466},
doi = {10.1093/BIOINFORMATICS/BTV466},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WitteVDBADDVF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WittelsburgerPL15,
author = {Ulrich Wittelsb{\"{u}}rger and
Bastian Pfeifer and
Martin J. Lercher},
title = {WhopGenome: high-speed access to whole-genome variation and sequence
data in {R}},
journal = {Bioinform.},
volume = {31},
number = {3},
pages = {413--415},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu636},
doi = {10.1093/BIOINFORMATICS/BTU636},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WittelsburgerPL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WittlerMSM15,
author = {Roland Wittler and
Tobias Marschall and
Alexander Sch{\"{o}}nhuth and
Veli M{\"{a}}kinen},
title = {Repeat- and error-aware comparison of deletions},
journal = {Bioinform.},
volume = {31},
number = {18},
pages = {2947--2954},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv304},
doi = {10.1093/BIOINFORMATICS/BTV304},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WittlerMSM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WitzelFLSB15,
author = {Franziska Witzel and
Raphaela Fritsche{-}Guenther and
Nadine Lehmann and
Anja Sieber and
Nils Bl{\"{u}}thgen},
title = {Analysis of impedance-based cellular growth assays},
journal = {Bioinform.},
volume = {31},
number = {16},
pages = {2705--2712},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv216},
doi = {10.1093/BIOINFORMATICS/BTV216},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WitzelFLSB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WolfeC15,
author = {Nicholas W. Wolfe and
Nathan L. Clark},
title = {{ERC} analysis: web-based inference of gene function via evolutionary
rate covariation},
journal = {Bioinform.},
volume = {31},
number = {23},
pages = {3835--3837},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv454},
doi = {10.1093/BIOINFORMATICS/BTV454},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WolfeC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WongCKLM15,
author = {Gerard Wong and
Jeffrey Chan and
Bronwyn A. Kingwell and
Christopher Leckie and
Peter J. Meikle},
title = {{LICRE:} unsupervised feature correlation reduction for lipidomics},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {619},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu689},
doi = {10.1093/BIOINFORMATICS/BTU689},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WongCKLM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WongLPZ15,
author = {Ka{-}Chun Wong and
Yue Li and
Chengbin Peng and
Zhaolei Zhang},
title = {SignalSpider: probabilistic pattern discovery on multiple normalized
ChIP-Seq signal profiles},
journal = {Bioinform.},
volume = {31},
number = {1},
pages = {17--24},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu604},
doi = {10.1093/BIOINFORMATICS/BTU604},
timestamp = {Mon, 06 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WongLPZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WozniakK15,
author = {Pawel P. Wozniak and
Malgorzata Kotulska},
title = {AmyLoad: website dedicated to amyloidogenic protein fragments},
journal = {Bioinform.},
volume = {31},
number = {20},
pages = {3395--3397},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv375},
doi = {10.1093/BIOINFORMATICS/BTV375},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WozniakK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Wu15,
author = {Yufeng Wu},
title = {A coalescent-based method for population tree inference with haplotypes},
journal = {Bioinform.},
volume = {31},
number = {5},
pages = {691--698},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu710},
doi = {10.1093/BIOINFORMATICS/BTU710},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Wu15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WuWW15,
author = {Hao Wu and
Chi Wang and
Zhijin Wu},
title = {{PROPER:} comprehensive power evaluation for differential expression
using RNA-seq},
journal = {Bioinform.},
volume = {31},
number = {2},
pages = {233--241},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu640},
doi = {10.1093/BIOINFORMATICS/BTU640},
timestamp = {Thu, 23 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WuWW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XavierXMR15,
author = {Alencar Xavier and
Shizhong Xu and
William M. Muir and
Katy Martin Rainey},
title = {{NAM:} association studies in multiple populations},
journal = {Bioinform.},
volume = {31},
number = {23},
pages = {3862--3864},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv448},
doi = {10.1093/BIOINFORMATICS/BTV448},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/XavierXMR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XiaoCZX15,
author = {Nan Xiao and
Dong{-}Sheng Cao and
Min{-}Feng Zhu and
Qing{-}Song Xu},
title = {protr/ProtrWeb: {R} package and web server for generating various
numerical representation schemes of protein sequences},
journal = {Bioinform.},
volume = {31},
number = {11},
pages = {1857--1859},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv042},
doi = {10.1093/BIOINFORMATICS/BTV042},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/XiaoCZX15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XiaoMZ15,
author = {Feifei Xiao and
Xiaoyi Min and
Heping Zhang},
title = {Modified screening and ranking algorithm for copy number variation
detection},
journal = {Bioinform.},
volume = {31},
number = {9},
pages = {1341--1348},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu850},
doi = {10.1093/BIOINFORMATICS/BTU850},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XiaoMZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XinGEPKAM15,
author = {Hongyi Xin and
John Greth and
John Emmons and
Gennady Pekhimenko and
Carl Kingsford and
Can Alkan and
Onur Mutlu},
title = {Shifted Hamming distance: a fast and accurate SIMD-friendly filter
to accelerate alignment verification in read mapping},
journal = {Bioinform.},
volume = {31},
number = {10},
pages = {1553--1560},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu856},
doi = {10.1093/BIOINFORMATICS/BTU856},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/XinGEPKAM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XuCS0C15,
author = {Lei Xu and
Jeffrey A. Cruz and
Linda J. Savage and
David M. Kramer and
Jin Chen},
title = {Plant photosynthesis phenomics data quality control},
journal = {Bioinform.},
volume = {31},
number = {11},
pages = {1796--1804},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu854},
doi = {10.1093/BIOINFORMATICS/BTU854},
timestamp = {Thu, 23 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/XuCS0C15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XuDYCLLL15,
author = {Zheng Xu and
Qing Duan and
Song Yan and
Wei Chen and
Mingyao Li and
Ethan M. Lange and
Yun Li},
title = {{DISSCO:} direct imputation of summary statistics allowing covariates},
journal = {Bioinform.},
volume = {31},
number = {15},
pages = {2434--2442},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv168},
doi = {10.1093/BIOINFORMATICS/BTV168},
timestamp = {Thu, 09 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XuDYCLLL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XuGSZ15,
author = {Yaomin Xu and
Xingyi Guo and
Jiayang Sun and
Zhongming Zhao},
title = {Snowball: resampling combined with distance-based regression to discover
transcriptional consequences of a driver mutation},
journal = {Bioinform.},
volume = {31},
number = {1},
pages = {84--93},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu603},
doi = {10.1093/BIOINFORMATICS/BTU603},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XuGSZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XuJLG15,
author = {Dong Xu and
Lukasz Jaroszewski and
Zhanwen Li and
Adam Godzik},
title = {{AIDA:} \emph{ab initio} domain assembly for automated multi-domain
protein structure prediction and domain-domain interaction prediction},
journal = {Bioinform.},
volume = {31},
number = {13},
pages = {2098--2105},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv092},
doi = {10.1093/BIOINFORMATICS/BTV092},
timestamp = {Wed, 30 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/XuJLG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XuMPFCGC15,
author = {Darui Xu and
Kara Marquis and
Jimin Pei and
Szu{-}Chin Fu and
Tolga Cagatay and
Nick V. Grishin and
Yuh Min Chook},
title = {LocNES: a computational tool for locating classical NESs in {CRM1}
cargo proteins},
journal = {Bioinform.},
volume = {31},
number = {9},
pages = {1357--1365},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu826},
doi = {10.1093/BIOINFORMATICS/BTU826},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XuMPFCGC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XuS15,
author = {Chen Xu and
Zhengchang Su},
title = {Identification of cell types from single-cell transcriptomes using
a novel clustering method},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {1974--1980},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv088},
doi = {10.1093/BIOINFORMATICS/BTV088},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XuS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XuSWQ15,
author = {Hao{-}Dong Xu and
Shao{-}Ping Shi and
Ping{-}Ping Wen and
Jian{-}Ding Qiu},
title = {SuccFind: a novel succinylation sites online prediction tool via enhanced
characteristic strategy},
journal = {Bioinform.},
volume = {31},
number = {23},
pages = {3748--3750},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv439},
doi = {10.1093/BIOINFORMATICS/BTV439},
timestamp = {Tue, 22 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XuSWQ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XuYZS15,
author = {Ying{-}Ying Xu and
Fan Yang and
Yang Zhang and
Hong{-}Bin Shen},
title = {Bioimaging-based detection of mislocalized proteins in human cancers
by semi-supervised learning},
journal = {Bioinform.},
volume = {31},
number = {7},
pages = {1111--1119},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu772},
doi = {10.1093/BIOINFORMATICS/BTU772},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/XuYZS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XuanHGLLZZD15,
author = {Ping Xuan and
Ke Han and
Yahong Guo and
Jin Li and
Xia Li and
Yingli Zhong and
Zhaogong Zhang and
Jian Ding},
title = {Prediction of potential disease-associated microRNAs based on random
walk},
journal = {Bioinform.},
volume = {31},
number = {11},
pages = {1805--1815},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv039},
doi = {10.1093/BIOINFORMATICS/BTV039},
timestamp = {Mon, 16 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XuanHGLLZZD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YamanishiTK15,
author = {Yoshihiro Yamanishi and
Yasuo Tabei and
Masaaki Kotera},
title = {Metabolome-scale \emph{de novo} pathway reconstruction using regioisomer-sensitive
graph alignments},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {161--170},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv224},
doi = {10.1093/BIOINFORMATICS/BTV224},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YamanishiTK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YanYXZZKBL15,
author = {Song Yan and
Shuai Yuan and
Zheng Xu and
Baqun Zhang and
Bo Zhang and
Guolian Kang and
Andrea Byrnes and
Yun Li},
title = {Likelihood-based complex trait association testing for arbitrary depth
sequencing data},
journal = {Bioinform.},
volume = {31},
number = {18},
pages = {2955--2962},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv307},
doi = {10.1093/BIOINFORMATICS/BTV307},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YanYXZZKBL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangHJZS15,
author = {Jing Yang and
Bao{-}Ji He and
Richard Jang and
Yang Zhang and
Hong{-}Bin Shen},
title = {Accurate disulfide-bonding network predictions improve \emph{ab initio}
structure prediction of cysteine-rich proteins},
journal = {Bioinform.},
volume = {31},
number = {23},
pages = {3773--3781},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv459},
doi = {10.1093/BIOINFORMATICS/BTV459},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangHJZS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangJ0Y15,
author = {Guangyuan Yang and
Wei Jiang and
Qiang Yang and
Weichuan Yu},
title = {{PBOOST:} a GPU-based tool for parallel permutation tests in genome-wide
association studies},
journal = {Bioinform.},
volume = {31},
number = {9},
pages = {1460--1462},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu840},
doi = {10.1093/BIOINFORMATICS/BTU840},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangJ0Y15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangR15,
author = {Jichen Yang and
Stephen A. Ramsey},
title = {A {DNA} shape-based regulatory score improves position-weight matrix-based
recognition of transcription factor binding sites},
journal = {Bioinform.},
volume = {31},
number = {21},
pages = {3445--3450},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv391},
doi = {10.1093/BIOINFORMATICS/BTV391},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangWLL15,
author = {Jing Yang and
Su{-}Juan Wu and
Yi{-}Xue Li and
Yuan{-}Yuan Li},
title = {DSviaDRM: an {R} package for estimating disease similarity via dysfunctional
regulation mechanism},
journal = {Bioinform.},
volume = {31},
number = {23},
pages = {3870--3872},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv474},
doi = {10.1093/BIOINFORMATICS/BTV474},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangWLL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangZY15,
author = {Youngik Yang and
Cuncong Zhong and
Shibu Yooseph},
title = {{SFA-SPA:} a suffix array based short peptide assembler for metagenomic
data},
journal = {Bioinform.},
volume = {31},
number = {11},
pages = {1833--1835},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv052},
doi = {10.1093/BIOINFORMATICS/BTV052},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangZY15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YatesBKMPRRTVF15,
author = {Andrew D. Yates and
Kathryn Beal and
Stephen Keenan and
William M. McLaren and
Miguel Pignatelli and
Graham R. S. Ritchie and
Magali Ruffier and
Kieron R. Taylor and
Alessandro Vullo and
Paul Flicek},
title = {The Ensembl {REST} {API:} Ensembl Data for Any Language},
journal = {Bioinform.},
volume = {31},
number = {1},
pages = {143--145},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu613},
doi = {10.1093/BIOINFORMATICS/BTU613},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YatesBKMPRRTVF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YaverogluMP15,
author = {{\"{O}}mer Nebil Yaveroglu and
Tijana Milenkovic and
Natasa Przulj},
title = {Proper evaluation of alignment-free network comparison methods},
journal = {Bioinform.},
volume = {31},
number = {16},
pages = {2697--2704},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv170},
doi = {10.1093/BIOINFORMATICS/BTV170},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YaverogluMP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YazdaniD15,
author = {A. Yazdani and
David B. Dunson},
title = {A hybrid bayesian approach for genome-wide association studies on
related individuals},
journal = {Bioinform.},
volume = {31},
number = {24},
pages = {3890--3896},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv496},
doi = {10.1093/BIOINFORMATICS/BTV496},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YazdaniD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YeJZL15,
author = {Chao Ye and
Bo Jiang and
Xuegong Zhang and
Jun S. Liu},
title = {dslice: an {R} package for nonparametric testing of associations with
application in {QTL} and gene set analysis},
journal = {Bioinform.},
volume = {31},
number = {11},
pages = {1842--1844},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv021},
doi = {10.1093/BIOINFORMATICS/BTV021},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YeJZL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YiLLZ15,
author = {Haisi Yi and
Zhe Li and
Tao Li and
Jindong Zhao},
title = {Bayexer: an accurate and fast Bayesian demultiplexer for Illumina
sequences},
journal = {Bioinform.},
volume = {31},
number = {24},
pages = {4000--4002},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv501},
doi = {10.1093/BIOINFORMATICS/BTV501},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YiLLZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YinV15,
author = {Peter Yin and
Benjamin Voight},
title = {MeRP: a high-throughput pipeline for Mendelian randomization analysis},
journal = {Bioinform.},
volume = {31},
number = {6},
pages = {957--959},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu742},
doi = {10.1093/BIOINFORMATICS/BTU742},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YinV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YooSKRLLJKT15,
author = {Minjae Yoo and
Jimin Shin and
Jihye Kim and
Karen A. Ryall and
Kyubum Lee and
Sunwon Lee and
Minji Jeon and
Jaewoo Kang and
Aik Choon Tan},
title = {DSigDB: drug signatures database for gene set analysis},
journal = {Bioinform.},
volume = {31},
number = {18},
pages = {3069--3071},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv313},
doi = {10.1093/BIOINFORMATICS/BTV313},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YooSKRLLJKT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YoonL15,
author = {Hyejin Yoon and
Thomas Leitner},
title = {PrimerDesign-M: a multiple-alignment based multiple-primer design
tool for walking across variable genomes},
journal = {Bioinform.},
volume = {31},
number = {9},
pages = {1472--1474},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu832},
doi = {10.1093/BIOINFORMATICS/BTU832},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YoonL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YounsiM15,
author = {Reda Younsi and
Dan MacLean},
title = {Using 2\emph{k} + 2 bubble searches to find single nucleotide polymorphisms
in \emph{k}-mer graphs},
journal = {Bioinform.},
volume = {31},
number = {5},
pages = {642--646},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu706},
doi = {10.1093/BIOINFORMATICS/BTU706},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YounsiM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuCSLA15,
author = {Yi{-}Kuo Yu and
John A. Capra and
Aleksandar Stojmirovic and
David Landsman and
Stephen F. Altschul},
title = {Log-odds sequence logos},
journal = {Bioinform.},
volume = {31},
number = {3},
pages = {324--331},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu634},
doi = {10.1093/BIOINFORMATICS/BTU634},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuCSLA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuPTG15,
author = {Jinchao Yu and
G{\'{e}}raldine Picord and
Pierre Tuff{\'{e}}ry and
Rapha{\"{e}}l Gu{\'{e}}rois},
title = {HHalign-Kbest: exploring sub-optimal alignments for remote homology
comparative modeling},
journal = {Bioinform.},
volume = {31},
number = {23},
pages = {3850--3852},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv441},
doi = {10.1093/BIOINFORMATICS/BTV441},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuPTG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuWH15,
author = {Guangchuang Yu and
Li{-}Gen Wang and
Qing{-}Yu He},
title = {ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison
and visualization},
journal = {Bioinform.},
volume = {31},
number = {14},
pages = {2382--2383},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv145},
doi = {10.1093/BIOINFORMATICS/BTV145},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuWH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuWYH15,
author = {Guangchuang Yu and
Li{-}Gen Wang and
Guang{-}Rong Yan and
Qing{-}Yu He},
title = {{DOSE:} an R/Bioconductor package for disease ontology semantic and
enrichment analysis},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {608--609},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu684},
doi = {10.1093/BIOINFORMATICS/BTU684},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuWYH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuanLCS15,
author = {Cheng Yuan and
Jikai Lei and
James R. Cole and
Yanni Sun},
title = {Reconstructing 16S rRNA genes in metagenomic data},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {35--43},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv231},
doi = {10.1093/BIOINFORMATICS/BTV231},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuanLCS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YueKNSNZRC15,
author = {Zongliang Yue and
Madhura M. Kshirsagar and
Thanh Nguyen and
Chayaporn Suphavilai and
Michael T. Neylon and
Liugen Zhu and
Timothy Ratliff and
Jake Yue Chen},
title = {{PAGER:} constructing PAGs and new {PAG-PAG} relationships for network
biology},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {250--257},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv265},
doi = {10.1093/BIOINFORMATICS/BTV265},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YueKNSNZRC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YugandharG15,
author = {K. Yugandhar and
M. Michael Gromiha},
title = {Response to the comment on 'protein-protein binding affinity prediction
from amino acid sequence'},
journal = {Bioinform.},
volume = {31},
number = {6},
pages = {978},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu821},
doi = {10.1093/BIOINFORMATICS/BTU821},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YugandharG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZaretzkiBHS15,
author = {Jed M. Zaretzki and
Michael R. Browning and
Tyler B. Hughes and
S. Joshua Swamidass},
title = {Extending {P450} site-of-metabolism models with region-resolution
data},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {1966--1973},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv100},
doi = {10.1093/BIOINFORMATICS/BTV100},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZaretzkiBHS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhabinskayaMB15,
author = {Dina Zhabinskaya and
Sally Madden and
Craig J. Benham},
title = {{SIST:} stress-induced structural transitions in superhelical {DNA}},
journal = {Bioinform.},
volume = {31},
number = {3},
pages = {421--422},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu657},
doi = {10.1093/BIOINFORMATICS/BTU657},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhabinskayaMB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangAWLGPTWSB15,
author = {Qunyuan Zhang and
Haley Abel and
Alan Wells and
Petra Lenzini and
Felicia Gomez and
Michael A. Province and
Alan A. Templeton and
George M. Weinstock and
Nita H. Salzman and
Ingrid B. Borecki},
title = {Selection of models for the analysis of risk-factor trees: leveraging
biological knowledge to mine large sets of risk factors with application
to microbiome data},
journal = {Bioinform.},
volume = {31},
number = {10},
pages = {1607--1613},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu855},
doi = {10.1093/BIOINFORMATICS/BTU855},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangAWLGPTWSB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangFZHCLLGXH15,
author = {Kun Zhang and
Yan Fu and
Wen{-}Feng Zeng and
Kun He and
Hao Chi and
Chao Liu and
Yan{-}Chang Li and
Yuan Gao and
Ping Xu and
Si{-}Min He},
title = {A note on the false discovery rate of novel peptides in proteogenomics},
journal = {Bioinform.},
volume = {31},
number = {20},
pages = {3249--3253},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv340},
doi = {10.1093/BIOINFORMATICS/BTV340},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangFZHCLLGXH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangJMNH15,
author = {Cheng Zhang and
Boyang Ji and
Adil Mardinoglu and
Jens Nielsen and
Qiang Hua},
title = {Logical transformation of genome-scale metabolic models for gene level
applications and analysis},
journal = {Bioinform.},
volume = {31},
number = {14},
pages = {2324--2331},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv134},
doi = {10.1093/BIOINFORMATICS/BTV134},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangJMNH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangJWGC15,
author = {Zhao Zhang and
Li Jiang and
Jingjing Wang and
Peizhen Gu and
Ming Chen},
title = {MTide: an integrated tool for the identification of miRNA-target interaction
in plants},
journal = {Bioinform.},
volume = {31},
number = {2},
pages = {290--291},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu633},
doi = {10.1093/BIOINFORMATICS/BTU633},
timestamp = {Mon, 02 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangJWGC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangKC15,
author = {Jing Zhang and
C.{-}C. Jay Kuo and
Liang Chen},
title = {WemIQ: an accurate and robust isoform quantification method for RNA-seq
data},
journal = {Bioinform.},
volume = {31},
number = {6},
pages = {878--885},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu757},
doi = {10.1093/BIOINFORMATICS/BTU757},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangKC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangWZWWZ15,
author = {Naiqian Zhang and
Hua{-}Jun Wu and
Weiwei Zhang and
Jun Wang and
Hao Wu and
Xiaoqi Zheng},
title = {Predicting tumor purity from methylation microarray data},
journal = {Bioinform.},
volume = {31},
number = {21},
pages = {3401--3405},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv370},
doi = {10.1093/BIOINFORMATICS/BTV370},
timestamp = {Mon, 30 Mar 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangWZWWZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhaoLZHDRHJHC15,
author = {Xing{-}Ming Zhao and
Keqin Liu and
Guanghui Zhu and
Feng He and
B{\'{e}}atrice Duval and
Jean{-}Michel Richer and
De{-}Shuang Huang and
Changjun Jiang and
Jin{-}Kao Hao and
Luonan Chen},
title = {Identifying cancer-related microRNAs based on gene expression data},
journal = {Bioinform.},
volume = {31},
number = {8},
pages = {1226--1234},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu811},
doi = {10.1093/BIOINFORMATICS/BTU811},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhaoLZHDRHJHC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhaoS15,
author = {Chunyu Zhao and
Ahmet Sacan},
title = {UniAlign: protein structure alignment meets evolution},
journal = {Bioinform.},
volume = {31},
number = {19},
pages = {3139--3146},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv354},
doi = {10.1093/BIOINFORMATICS/BTV354},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhaoS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhbannikovF15,
author = {Ilya Y. Zhbannikov and
James A. Foster},
title = {MetAmp: combining amplicon data from multiple markers for {OTU} analysis},
journal = {Bioinform.},
volume = {31},
number = {11},
pages = {1830--1832},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv049},
doi = {10.1093/BIOINFORMATICS/BTV049},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhbannikovF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhuHDHRMKK15,
author = {Na Zhu and
Verena Heinrich and
Thorsten Dickhaus and
Jochen Hecht and
Peter N. Robinson and
Stefan Mundlos and
Tom Kamphans and
Peter M. Krawitz},
title = {Strategies to improve the performance of rare variant association
studies by optimizing the selection of controls},
journal = {Bioinform.},
volume = {31},
number = {22},
pages = {3577--3583},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv457},
doi = {10.1093/BIOINFORMATICS/BTV457},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhuHDHRMKK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhuLZYY15,
author = {Zexuan Zhu and
Linsen Li and
Yongpeng Zhang and
Yanli Yang and
Xiao Yang},
title = {CompMap: a reference-based compression program to speed up read mapping
to related reference sequences},
journal = {Bioinform.},
volume = {31},
number = {3},
pages = {426--428},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu656},
doi = {10.1093/BIOINFORMATICS/BTU656},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhuLZYY15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhuSEG15,
author = {Fan Zhu and
Lihong Shi and
James Douglas Engel and
Yuanfang Guan},
title = {Regulatory network inferred using expression data of small sample
size: application and validation in erythroid system},
journal = {Bioinform.},
volume = {31},
number = {15},
pages = {2537--2544},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv186},
doi = {10.1093/BIOINFORMATICS/BTV186},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhuSEG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhuSWZ15,
author = {Jing Zhu and
Zhiao Shi and
Jing Wang and
Bing Zhang},
title = {Empowering biologists with multi-omics data: colorectal cancer as
a paradigm},
journal = {Bioinform.},
volume = {31},
number = {9},
pages = {1436--1443},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu834},
doi = {10.1093/BIOINFORMATICS/BTU834},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhuSWZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhuXK15,
author = {Xiaolei Zhu and
Yi Xiong and
Daisuke Kihara},
title = {Large-scale binding ligand prediction by improved patch-based method
Patch-Surfer2.0},
journal = {Bioinform.},
volume = {31},
number = {5},
pages = {707--713},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu724},
doi = {10.1093/BIOINFORMATICS/BTU724},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhuXK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZickmannR15,
author = {Franziska Zickmann and
Bernhard Y. Renard},
title = {MSProGene: integrative proteogenomics beyond six-frames and single
nucleotide polymorphisms},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {106--115},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv236},
doi = {10.1093/BIOINFORMATICS/BTV236},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZickmannR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZiehmIBPT15,
author = {Matthias Ziehm and
Dobril K. Ivanov and
Aditi Bhat and
Linda Partridge and
Janet M. Thornton},
title = {SurvCurv database and online survival analysis platform update},
journal = {Bioinform.},
volume = {31},
number = {23},
pages = {3878--3880},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv463},
doi = {10.1093/BIOINFORMATICS/BTV463},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZiehmIBPT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZielezinskiK15,
author = {Andrzej Zielezinski and
Wojciech M. Karlowski},
title = {Integrative data analysis indicates an intrinsic disordered domain
character of Argonaute-binding motifs},
journal = {Bioinform.},
volume = {31},
number = {3},
pages = {332--339},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu666},
doi = {10.1093/BIOINFORMATICS/BTU666},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZielezinskiK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZitnikZ15,
author = {Marinka Zitnik and
Blaz Zupan},
title = {Gene network inference by fusing data from diverse distributions},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {230--239},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv258},
doi = {10.1093/BIOINFORMATICS/BTV258},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZitnikZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZoritaCF15,
author = {Eduard Zorita and
Pol Cusc{\'{o}} and
Guillaume J. Filion},
title = {Starcode: sequence clustering based on all-pairs search},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {1913--1919},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv053},
doi = {10.1093/BIOINFORMATICS/BTV053},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZoritaCF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZouHBS15,
author = {James Y. Zou and
Eran Halperin and
Esteban Gonz{\`{a}}lez Burchard and
Sriram Sankararaman},
title = {Inferring parental genomic ancestries using pooled semi-Markov processes},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {190--196},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv239},
doi = {10.1093/BIOINFORMATICS/BTV239},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZouHBS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZouHGW15,
author = {Quan Zou and
Qinghua Hu and
Maozu Guo and
Guohua Wang},
title = {HAlign: Fast multiple similar {DNA/RNA} sequence alignment based on
the centre star strategy},
journal = {Bioinform.},
volume = {31},
number = {15},
pages = {2475--2481},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv177},
doi = {10.1093/BIOINFORMATICS/BTV177},
timestamp = {Wed, 11 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZouHGW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZouLZW15,
author = {Meng Zou and
Zhaoqi Liu and
Xiang{-}Sun Zhang and
Yong Wang},
title = {{NCC-AUC:} an {AUC} optimization method to identify multi-biomarker
panel for cancer prognosis from genomic and clinical data},
journal = {Bioinform.},
volume = {31},
number = {20},
pages = {3330--3338},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv374},
doi = {10.1093/BIOINFORMATICS/BTV374},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZouLZW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZuCL15,
author = {Songpeng Zu and
Ting Chen and
Shao Li},
title = {Global optimization-based inference of chemogenomic features from
drug-target interactions},
journal = {Bioinform.},
volume = {31},
number = {15},
pages = {2523--2529},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv181},
doi = {10.1093/BIOINFORMATICS/BTV181},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZuCL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZulkowerPRGJ15,
author = {Valentin Zulkower and
Michel Page and
Delphine Ropers and
Johannes Geiselmann and
Hidde de Jong},
title = {Robust reconstruction of gene expression profiles from reporter gene
data using linear inversion},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {71--79},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv246},
doi = {10.1093/BIOINFORMATICS/BTV246},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZulkowerPRGJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZundertB15,
author = {G. C. P. van Zundert and
Alexandre M. J. J. Bonvin},
title = {DisVis: quantifying and visualizing accessible interaction space of
distance-restrained biomolecular complexes},
journal = {Bioinform.},
volume = {31},
number = {19},
pages = {3222--3224},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv333},
doi = {10.1093/BIOINFORMATICS/BTV333},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZundertB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZuoSK15,
author = {Chandler Zuo and
Sunyoung Shin and
S{\"{u}}nd{\"{u}}z Keles},
title = {atSNP: transcription factor binding affinity testing for regulatory
{SNP} detection},
journal = {Bioinform.},
volume = {31},
number = {20},
pages = {3353--3355},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv328},
doi = {10.1093/BIOINFORMATICS/BTV328},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZuoSK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZurT15,
author = {Hadas Zur and
Tamir Tuller},
title = {Exploiting hidden information interleaved in the redundancy of the
genetic code without prior knowledge},
journal = {Bioinform.},
volume = {31},
number = {8},
pages = {1161--1168},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu797},
doi = {10.1093/BIOINFORMATICS/BTU797},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZurT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NicolaePR15,
title = {{LFQC:} a lossless compression algorithm for {FASTQ} files},
journal = {Bioinform.},
volume = {31},
number = {20},
pages = {3276--3281},
year = {2015},
note = {Withdrawn.},
url = {https://doi.org/10.1093/bioinformatics/btv384},
doi = {10.1093/BIOINFORMATICS/BTV384},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NicolaePR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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