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@article{DBLP:journals/almob/ApostolicoCDP13,
author = {Alberto Apostolico and
Matteo Comin and
Andreas W. M. Dress and
Laxmi Parida},
title = {Ultrametric networks: a new tool for phylogenetic analysis},
journal = {Algorithms Mol. Biol.},
volume = {8},
pages = {7},
year = {2013},
url = {https://doi.org/10.1186/1748-7188-8-7},
doi = {10.1186/1748-7188-8-7},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/ApostolicoCDP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/BharH0MBW13,
author = {Anirban Bhar and
Martin Haubrock and
Anirban Mukhopadhyay and
Ujjwal Maulik and
Sanghamitra Bandyopadhyay and
Edgar Wingender},
title = {Coexpression and coregulation analysis of time-series gene expression
data in estrogen-induced breast cancer cell},
journal = {Algorithms Mol. Biol.},
volume = {8},
pages = {9},
year = {2013},
url = {https://doi.org/10.1186/1748-7188-8-9},
doi = {10.1186/1748-7188-8-9},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/almob/BharH0MBW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/CastellanaLRSPGV13,
author = {Natalie Castellana and
Andrey Lushnikov and
Piotr Rotkiewicz and
Natasha Sefcovic and
Pavel A. Pevzner and
Adam Godzik and
Kira Vyatkina},
title = {{MORPH-PRO:} a novel algorithm and web server for protein morphing},
journal = {Algorithms Mol. Biol.},
volume = {8},
pages = {19},
year = {2013},
url = {https://doi.org/10.1186/1748-7188-8-19},
doi = {10.1186/1748-7188-8-19},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/CastellanaLRSPGV13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/CatanzaroRS13,
author = {Daniele Catanzaro and
Ramamoorthi Ravi and
Russell Schwartz},
title = {A mixed integer linear programming model to reconstruct phylogenies
from single nucleotide polymorphism haplotypes under the maximum parsimony
criterion},
journal = {Algorithms Mol. Biol.},
volume = {8},
pages = {3},
year = {2013},
url = {https://doi.org/10.1186/1748-7188-8-3},
doi = {10.1186/1748-7188-8-3},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/CatanzaroRS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/ChaudharyBF13,
author = {Ruchi Chaudhary and
John Gordon Burleigh and
David Fern{\'{a}}ndez{-}Baca},
title = {Inferring species trees from incongruent multi-copy gene trees using
the Robinson-Foulds distance},
journal = {Algorithms Mol. Biol.},
volume = {8},
pages = {28},
year = {2013},
url = {https://doi.org/10.1186/1748-7188-8-28},
doi = {10.1186/1748-7188-8-28},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/ChaudharyBF13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/ChikhiR13,
author = {Rayan Chikhi and
Guillaume Rizk},
title = {Space-efficient and exact de Bruijn graph representation based on
a Bloom filter},
journal = {Algorithms Mol. Biol.},
volume = {8},
pages = {22},
year = {2013},
url = {https://doi.org/10.1186/1748-7188-8-22},
doi = {10.1186/1748-7188-8-22},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/ChikhiR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/CloteKK13,
author = {Peter Clote and
Evangelos Kranakis and
Danny Krizanc},
title = {Asymptotic structural properties of quasi-random saturated structures
of {RNA}},
journal = {Algorithms Mol. Biol.},
volume = {8},
pages = {24},
year = {2013},
url = {https://doi.org/10.1186/1748-7188-8-24},
doi = {10.1186/1748-7188-8-24},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/CloteKK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/Compeau13,
author = {Phillip E. C. Compeau},
title = {DCJ-Indel sorting revisited},
journal = {Algorithms Mol. Biol.},
volume = {8},
pages = {6},
year = {2013},
url = {https://doi.org/10.1186/1748-7188-8-6},
doi = {10.1186/1748-7188-8-6},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/Compeau13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/CuiLBAL13,
author = {Xuefeng Cui and
Shuai Cheng Li and
Dongbo Bu and
Babak Alipanahi and
Ming Li},
title = {Protein Structure Idealization: How accurately is it possible to model
protein structures with dihedral angles?},
journal = {Algorithms Mol. Biol.},
volume = {8},
pages = {5},
year = {2013},
url = {https://doi.org/10.1186/1748-7188-8-5},
doi = {10.1186/1748-7188-8-5},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/CuiLBAL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/DeepakFM13,
author = {Akshay Deepak and
David Fern{\'{a}}ndez{-}Baca and
Michelle M. McMahon},
title = {Extracting conflict-free information from multi-labeled trees},
journal = {Algorithms Mol. Biol.},
volume = {8},
pages = {18},
year = {2013},
url = {https://doi.org/10.1186/1748-7188-8-18},
doi = {10.1186/1748-7188-8-18},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/DeepakFM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/DeorowiczG13,
author = {Sebastian Deorowicz and
Szymon Grabowski},
title = {Data compression for sequencing data},
journal = {Algorithms Mol. Biol.},
volume = {8},
pages = {25},
year = {2013},
url = {https://doi.org/10.1186/1748-7188-8-25},
doi = {10.1186/1748-7188-8-25},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/DeorowiczG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/Dexter013,
author = {Daniel Dexter and
Daniel G. Brown},
title = {Fast half-sibling population reconstruction: theory and algorithms},
journal = {Algorithms Mol. Biol.},
volume = {8},
pages = {20},
year = {2013},
url = {https://doi.org/10.1186/1748-7188-8-20},
doi = {10.1186/1748-7188-8-20},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/Dexter013.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/DuggalPSWFKK13,
author = {Geet Duggal and
Rob Patro and
Emre Sefer and
Hao Wang and
Darya Filippova and
Samir Khuller and
Carl Kingsford},
title = {Resolving spatial inconsistencies in chromosome conformation measurements},
journal = {Algorithms Mol. Biol.},
volume = {8},
pages = {8},
year = {2013},
url = {https://doi.org/10.1186/1748-7188-8-8},
doi = {10.1186/1748-7188-8-8},
timestamp = {Tue, 03 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/DuggalPSWFKK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/DyrkaNK13,
author = {Witold Dyrka and
Jean{-}Christophe Nebel and
Malgorzata Kotulska},
title = {Probabilistic grammatical model for helix-helix contact site classification},
journal = {Algorithms Mol. Biol.},
volume = {8},
pages = {31},
year = {2013},
url = {https://doi.org/10.1186/1748-7188-8-31},
doi = {10.1186/1748-7188-8-31},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/almob/DyrkaNK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/GavryushkinaWD13,
author = {Alexandra Gavryushkina and
David Welch and
Alexei J. Drummond},
title = {Recursive algorithms for phylogenetic tree counting},
journal = {Algorithms Mol. Biol.},
volume = {8},
pages = {26},
year = {2013},
url = {https://doi.org/10.1186/1748-7188-8-26},
doi = {10.1186/1748-7188-8-26},
timestamp = {Thu, 01 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/almob/GavryushkinaWD13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/HalldorssonBS13,
author = {Bjarni V. Halld{\'{o}}rsson and
Dima Blokh and
Roded Sharan},
title = {Estimating population size via line graph reconstruction},
journal = {Algorithms Mol. Biol.},
volume = {8},
pages = {17},
year = {2013},
url = {https://doi.org/10.1186/1748-7188-8-17},
doi = {10.1186/1748-7188-8-17},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/HalldorssonBS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/IslamR13,
author = {A. S. M. Sohidull Islam and
Mohammad Sohel Rahman},
title = {On the protein folding problem in 2D-triangular lattices},
journal = {Algorithms Mol. Biol.},
volume = {8},
pages = {30},
year = {2013},
url = {https://doi.org/10.1186/1748-7188-8-30},
doi = {10.1186/1748-7188-8-30},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/IslamR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/KilpatrickWA13,
author = {Alastair M. Kilpatrick and
Bruce Ward and
Stuart Aitken},
title = {{MCOIN:} a novel heuristic for determining transcription factor binding
site motif width},
journal = {Algorithms Mol. Biol.},
volume = {8},
pages = {16},
year = {2013},
url = {https://doi.org/10.1186/1748-7188-8-16},
doi = {10.1186/1748-7188-8-16},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/KilpatrickWA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/KourmpetisDB13,
author = {Yiannis Kourmpetis and
Aalt D. J. van Dijk and
Cajo J. F. ter Braak},
title = {Gene Ontology consistent protein function prediction: the {FALCON}
algorithm applied to six eukaryotic genomes},
journal = {Algorithms Mol. Biol.},
volume = {8},
pages = {10},
year = {2013},
url = {https://doi.org/10.1186/1748-7188-8-10},
doi = {10.1186/1748-7188-8-10},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/KourmpetisDB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/Li13,
author = {Shuai Cheng Li},
title = {The Difficulty Of Protein Structure Alignment Under The {RMSD}},
journal = {Algorithms Mol. Biol.},
volume = {8},
pages = {1},
year = {2013},
url = {https://doi.org/10.1186/1748-7188-8-1},
doi = {10.1186/1748-7188-8-1},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/Li13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/LuL13,
author = {Songjian Lu and
Xinghua Lu},
title = {Using graph model to find transcription factor modules: the hitting
set problem and an exact algorithm},
journal = {Algorithms Mol. Biol.},
volume = {8},
pages = {2},
year = {2013},
url = {https://doi.org/10.1186/1748-7188-8-2},
doi = {10.1186/1748-7188-8-2},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/LuL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/MiloZKBDZ13,
author = {Nimrod Milo and
Shay Zakov and
Erez Katzenelson and
Eitan Bachmat and
Yefim Dinitz and
Michal Ziv{-}Ukelson},
title = {Unrooted unordered homeomorphic subtree alignment of {RNA} trees},
journal = {Algorithms Mol. Biol.},
volume = {8},
pages = {13},
year = {2013},
url = {https://doi.org/10.1186/1748-7188-8-13},
doi = {10.1186/1748-7188-8-13},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/MiloZKBDZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/MohamadODYAI13,
author = {Mohd Saberi Mohamad and
Sigeru Omatu and
Safaai Deris and
Michifumi Yoshioka and
Afnizanfaizal Abdullah and
Zuwairie Ibrahim},
title = {An enhancement of binary particle swarm optimization for gene selection
in classifying cancer classes},
journal = {Algorithms Mol. Biol.},
volume = {8},
pages = {15},
year = {2013},
url = {https://doi.org/10.1186/1748-7188-8-15},
doi = {10.1186/1748-7188-8-15},
timestamp = {Tue, 15 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/MohamadODYAI13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/NguyenRPCDB13,
author = {Thi Hau Nguyen and
Vincent Ranwez and
St{\'{e}}phanie Pointet and
Anne{-}Muriel Arigon Chifolleau and
Jean{-}Philippe Doyon and
Vincent Berry},
title = {Reconciliation and local gene tree rearrangement can be of mutual
profit},
journal = {Algorithms Mol. Biol.},
volume = {8},
pages = {12},
year = {2013},
url = {https://doi.org/10.1186/1748-7188-8-12},
doi = {10.1186/1748-7188-8-12},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/almob/NguyenRPCDB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/PinhasZTZ13,
author = {Tamar Pinhas and
Shay Zakov and
Dekel Tsur and
Michal Ziv{-}Ukelson},
title = {Efficient edit distance with duplications and contractions},
journal = {Algorithms Mol. Biol.},
volume = {8},
pages = {27},
year = {2013},
url = {https://doi.org/10.1186/1748-7188-8-27},
doi = {10.1186/1748-7188-8-27},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/PinhasZTZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/PontesGA13,
author = {Beatriz Pontes and
Ra{\'{u}}l Gir{\'{a}}ldez and
Jes{\'{u}}s S. Aguilar{-}Ruiz},
title = {Configurable pattern-based evolutionary biclustering of gene expression
data},
journal = {Algorithms Mol. Biol.},
volume = {8},
pages = {4},
year = {2013},
url = {https://doi.org/10.1186/1748-7188-8-4},
doi = {10.1186/1748-7188-8-4},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/PontesGA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/ShuttersVF13,
author = {Brad Shutters and
Sudheer Vakati and
David Fern{\'{a}}ndez{-}Baca},
title = {Incompatible quartets, triplets, and characters},
journal = {Algorithms Mol. Biol.},
volume = {8},
pages = {11},
year = {2013},
url = {https://doi.org/10.1186/1748-7188-8-11},
doi = {10.1186/1748-7188-8-11},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/ShuttersVF13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/SilvaMDB13,
author = {Poly H. da Silva and
Raphael Machado and
Simone Dantas and
Mar{\'{\i}}lia D. V. Braga},
title = {DCJ-indel and DCJ-substitution distances with distinct operation costs},
journal = {Algorithms Mol. Biol.},
volume = {8},
pages = {21},
year = {2013},
url = {http://www.almob.org/content/8/1/21},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/SilvaMDB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/SternM13,
author = {Harry A. Stern and
David H. Mathews},
title = {Accelerating calculations of {RNA} secondary structure partition functions
using GPUs},
journal = {Algorithms Mol. Biol.},
volume = {8},
pages = {29},
year = {2013},
url = {https://doi.org/10.1186/1748-7188-8-29},
doi = {10.1186/1748-7188-8-29},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/SternM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/VorontsovKM13,
author = {Ilya E. Vorontsov and
Ivan V. Kulakovskiy and
Vsevolod J. Makeev},
title = {Jaccard index based similarity measure to compare transcription factor
binding site models},
journal = {Algorithms Mol. Biol.},
volume = {8},
pages = {23},
year = {2013},
url = {https://doi.org/10.1186/1748-7188-8-23},
doi = {10.1186/1748-7188-8-23},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/VorontsovKM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/WillSHESRB13,
author = {Sebastian Will and
Michael F. Siebauer and
Steffen Heyne and
Jan Engelhardt and
Peter F. Stadler and
Kristin Reiche and
Rolf Backofen},
title = {LocARNAscan: Incorporating thermodynamic stability in sequence and
structure-based {RNA} homology search},
journal = {Algorithms Mol. Biol.},
volume = {8},
pages = {14},
year = {2013},
url = {https://doi.org/10.1186/1748-7188-8-14},
doi = {10.1186/1748-7188-8-14},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/WillSHESRB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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