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@inproceedings{DBLP:conf/psb/AlkanBEKS10, author = {Can Alkan and Michael Brudno and Evan E. Eichler and Maricel G. Kann and S{\"{u}}leyman Cenk Sahinalp}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Session Introduction}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {302--304}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/intro-personal.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/AlkanBEKS10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/AlterovitzCMRW10, author = {Gil Alterovitz and Silvio Cavalcanti and Taro Muso and Marco Ramoni and May Wang}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Session Introduction}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {383--384}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/intro-reverse.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/AlterovitzCMRW10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/BackofenCHSS10, author = {Rolf Backofen and Hamidreza Chitsaz and Ivo L. Hofacker and S{\"{u}}leyman Cenk Sahinalp and Peter F. Stadler}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Session Introduction}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {54--56}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/intro-rna.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/BackofenCHSS10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/BallLGPVDP10, author = {David A. Ball and Matthew W. Lux and Russell R. Graef and Matthew W. Peterson and Jane D. Valenti and John Dileo and Jean Peccoud}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Co-Design in Synthetic Biology: {A} System-Level Analysis of the Development of an Environmental Sensing Device}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {385--396}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/ball.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/BallLGPVDP10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/Berger-WolfPSS10, author = {Tanya Y. Berger{-}Wolf and Teresa M. Przytycka and Mona Singh and Donna K. Slonim}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Session Introduction}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {120--122}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/intro-dynamics.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/Berger-WolfPSS10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/BiasioloFPFALTNMBB10, author = {Marta Biasiolo and Mattia Forcato and Lino Possamai and Francesco Ferrari and Luca Agnelli and Marta Lionetti and Katia Todoerti and Antonino Neri and Massimo Marchiori and Stefania Bortoluzzi and Silvio Bicciato}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Critical Analysis of Transcriptional and Post-Transcriptional Regulatory Networks in Multiple Myeloma}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {397--408}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/biasiolo.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/BiasioloFPFALTNMBB10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/CeroniFC10, author = {Francesca Ceroni and Simone Furini and Silvio Cavalcanti}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {A Computational Model of Gene Expression in an Inducible Synthetic Circuit}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {409--420}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/ceroni.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/CeroniFC10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/ChindelevitchLB10, author = {Leonid Chindelevitch and Chung{-}Shou Liao and Bonnie Berger}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Local Optimization for Global Alignment of Protein Interaction Networks}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {123--132}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/chindelevitch.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/ChindelevitchLB10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/ChowdhuryK10, author = {Salim A. Chowdhury and Mehmet Koyut{\"{u}}rk}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Identification of Coordinately Dysregulated Subnetworks in Complex Phenotypes}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {133--144}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/chowdhury.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/ChowdhuryK10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/ClementeJV10, author = {Jos{\'{e}} Carlos Clemente and Jesper Jansson and Gabriel Valiente}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Accurate Taxonomic Assignment of Short Pyrosequencing Reads}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {3--9}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/clemente.pdf}, timestamp = {Tue, 17 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/psb/ClementeJV10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/CorradinCRCTC10, author = {Alberto Corradin and Barbara Di Camillo and Francesca Rende and Vincenzo Ciminale and Gianna Toffolo and Claudio Cobelli}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Retrovirus {HTLV-1} Gene Circuit: {A} Potential Oscillator for Eukaryotes}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {421--432}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/corradin.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/CorradinCRCTC10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/CouletSHBA10, author = {Adrien Coulet and Nigam H. Shah and Lawrence Hunter and Chitta Baral and Russ B. Altman}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Extraction of Genotype-Phenotype-Drug Relationships from Text: From Entity Recognition to Bioinformatics Application}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {485--487}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/wkshp-gdp.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/CouletSHBA10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/DavidsonBLE10, author = {Eric A. Davidson and Thomas Van Blarcom and Matthew Levy and Andrew D. Ellington}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Emulsion Based Selection of {T7} Promoters of Varying Activity}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {433--443}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/davidson.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/DavidsonBLE10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/DelalandeFLGHB10, author = {Olivier Delalande and Nicolas F{\'{e}}rey and Benoist Laurent and Marc Gueroult and Brigitte Hartmann and Marc Baaden}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Multi-Resolution Approach for Interactively Locating Functionally Linked Ion Binding Sites by Steering Small Molecules into Electrostatic Potential Maps Using a Haptic Device}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {205--215}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/delalande.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/DelalandeFLGHB10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/DotuLHC10, author = {Iv{\'{a}}n Dot{\'{u}} and W. A. Lorenz and Pascal Van Hentenryck and Peter Clote}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {{RNA} Structural Segmentation}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {57--68}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/dotu.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/DotuLHC10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/EssingerR10, author = {Steven D. Essinger and Gail L. Rosen}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Benchmarking {BLAST} Accuracy of Genus/Phyla Classification of Metagenomic Reads}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {10--20}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/essinger.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/EssingerR10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/FangKPSMK10, author = {Gang Fang and Rui Kuang and Gaurav Pandey and Michael S. Steinbach and Chad L. Myers and Vipin Kumar}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Subspace Differential Coexpression Analysis: Problem Definition and a General Approach}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {145--156}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/fang.pdf}, timestamp = {Mon, 08 Nov 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/FangKPSMK10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/FloresBHZS10, author = {Samuel Flores and Julie Bernauer and Xuhui Huang and Ruhong Zhou and Seokmin Shin}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Session Introduction}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {200--204}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/intro-multires.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/FloresBHZS10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/FloresWRA10, author = {Samuel Flores and Yaqi Wan and Rick Russell and Russ B. Altman}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Predicting {RNA} Structure by Multiple Template Homology Modeling}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {216--227}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/flores.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/FloresWRA10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/GartenTA10, author = {Yael Garten and Nicholas P. Tatonetti and Russ B. Altman}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Improving the Prediction of Pharmacogenes Using Text-Derived Gene-Drug Relationships}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {305--314}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/garten.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/GartenTA10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/GavranovicT10, author = {Haris Gavranovic and Eric Tannier}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Guided Genome Halving: Provably Optimal Solutions Provide Good Insights into the Preduplication Ancestral Genome of Saccharomyces Cerevisiae}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {21--30}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/gavranovic.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/GavranovicT10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/GoldsteinHFS10, author = {Richard A. Goldstein and Phil Husbands and Chrisantha Fernando and Dov J. Stekel}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {In Silico Biology}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {477--480}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/wkshp-insilico.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/GoldsteinHFS10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/GradyTDGSR10, author = {Benjamin J. Grady and Eric Torstenson and Scott M. Dudek and Justin Giles and David Sexton and Marylyn D. Ritchie}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Finding Unique Filter Sets in {PLATO:} {A} Precursor to Efficient Interaction Analysis in {GWAS} Data}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {315--326}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/grady.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/GradyTDGSR10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/GreeneHNKWAKM10, author = {Casey S. Greene and Daniel S. Himmelstein and Heather H. Nelson and Karl T. Kelsey and Scott M. Williams and Angeline S. Andrew and Margaret R. Karagas and Jason H. Moore}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Enabling Personal Genomics with an Explicit Test of Epistasis}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {327--336}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/greene.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/GreeneHNKWAKM10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/GruberFWHS10, author = {Andreas R. Gruber and Sven Findei{\ss} and Stefan Washietl and Ivo L. Hofacker and Peter F. Stadler}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {RNAz 2.0: Improved Noncoding {RNA} Detection}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {69--79}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/gruber.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/GruberFWHS10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/HickeyB10, author = {Glenn Hickey and Mathieu Blanchette}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {A Practical Algorithm for Estimation of the Maximum Likelihood Ancestral Reconstruction Error}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {31--42}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/hickey.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/HickeyB10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/HuangYBSGCP10, author = {Xuhui Huang and Yuan Yao and Gregory R. Bowman and Jian Sun and Leonidas J. Guibas and Gunnar E. Carlsson and Vijay S. Pande}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Constructing Multi-Resolution Markov State Models (MSMs) to Elucidate {RNA} Hairpin Folding Mechanisms}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {228--239}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/huang.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/HuangYBSGCP10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/IzaguirreSP10, author = {Jes{\'{u}}s A. Izaguirre and Christopher R. Sweet and Vijay S. Pande}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Multiscale Dynamics of Macromolecules Using Normal Mode Langevin}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {240--251}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/izaguirre.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/IzaguirreSP10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/KalismanL10, author = {Nir Kalisman and Michael Levitt}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Insights into the Intra-Ring Subunit Order of TriC/CCT: Structural and Evolutionary Analysis}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {252--259}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/kalisman.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/KalismanL10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/KassonP10, author = {Peter M. Kasson and Vijay S. Pande}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Cross-Graining: Efficient Multi-Scale Simulation via Markov State Models}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {260--268}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/kasson.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/KassonP10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/LangenbergerBSH10, author = {David Langenberger and Clara Bermudez{-}Santana and Peter F. Stadler and Steve Hoffmann}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Identification and Classification of Small RNAs in Transcriptome Sequence Data}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {80--87}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/langenberger.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/LangenbergerBSH10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/LiCL10, author = {Xin Li and Yixuan Chen and Jing Li}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Detecting Genome-wide Haplotype Polymorphism by Combined Use of Mendelian Constraints and Local Population Structure}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {348--358}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/li\_x.pdf}, timestamp = {Fri, 19 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/psb/LiCL10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/LiIMR10, author = {Shuyan Li and Lilia M. Iakoucheva and Sean D. Mooney and Predrag Radivojac}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Loss of Post-Translational Modification Sites in Disease}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {337--347}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/li\_s.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/LiIMR10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/LiuB10, author = {Ying Liu and Ivet Bahar}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Toward Understanding Allosteric Signaling Mechanisms in the ATPase Domain of Molecular Chaperones}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {269--280}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/liu.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/LiuB10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/MavridisR10, author = {Lazaros Mavridis and David W. Ritchie}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {3D-Blast: 3D Protein Structure Alignment, Comparison, and Classification Using Spherical Polar Fourier Correlations}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {281--292}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/mavridis.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/MavridisR10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/MillerWZSH10, author = {Webb Miller and Stephen J. Wright and Yu Zhang and Stephan C. Schuster and Vanessa M. Hayes}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Optimization Methods for Selecting Founder Populations for Captive Breeding of Endangered Species}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {43--53}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/miller.pdf}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/MillerWZSH10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/MorcosSAKI10, author = {Faruck Morcos and Marcin Sikora and Mark S. Alber and Dale Kaiser and Jes{\'{u}}s A. Izaguirre}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Estimation of Protein and Domain Interactions in the Switching Motility System of Myxococcus Xanthus}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {157--165}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/morcos.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/MorcosSAKI10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/MoretMPS10, author = {Bernard M. E. Moret and Webb Miller and Pavel A. Pevzner and David Sankoff}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Session Introduction}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {1--2}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/intro-compgen.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/MoretMPS10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/NavlakhaK10, author = {Saket Navlakha and Carl Kingsford}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Exploring Biological Network Dynamics with Ensembles of Graph Partitions}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {166--177}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/navlakha.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/NavlakhaK10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/OkadaSS10, author = {Yohei Okada and Kengo Sato and Yasubumi Sakakibara}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Improvement of Structure Conservation Index with Centroid Estimators}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {88--97}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/okada.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/OkadaSS10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/Perez-CanoSPF10, author = {Laura Perez{-}Cano and Albert Solernou and Carles Pons and Juan Fern{\'{a}}ndez{-}Recio}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Structural Prediction of Protein-RNA Interaction by Computational Docking with Propensity-Based Statistical Potentials}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {293--301}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/perezcano.pdf}, timestamp = {Wed, 01 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/Perez-CanoSPF10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/PoolsapKA10, author = {Unyanee Poolsap and Yuki Kato and Tatsuya Akutsu}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Dynamic Programming Algorithms for {RNA} Structure Prediction with Binding Sites}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {98--107}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/poolsap.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/PoolsapKA10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/PrzuljKSH10, author = {Natasa Przulj and Oleksii Kuchaiev and Aleksandar Stevanovic and Wayne B. Hayes}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Geometric Evolutionary Dynamics of Protein Interaction Networks}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {178--189}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/przulj.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/PrzuljKSH10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/RameshTHK10, author = {Archana Ramesh and Robert P. Trevino and Daniel D. Von Hoff and Seungchan Kim}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Clustering Context-Specific Gene Regulatory Networks}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {444--455}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/ramesh.pdf}, timestamp = {Sun, 22 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/psb/RameshTHK10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/SheaFRP10, author = {Adam Shea and Brian Fett and Marc D. Riedel and Keshab K. Parhi}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Writing and Compiling Code into Biochemistry}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {456--464}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/shea.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/SheaFRP10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/SterkHFW10, author = {Peter Sterk and Lynette Hirschman and Dawn Field and John C. Wooley}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Genomic Standards Consortium Workshop: Metagenomics, Metadata and Metaanalysis {(M3)}}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {481--484}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/wkshp-GSC.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/SterkHFW10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/TariALHB10, author = {Luis Tari and Saadat Anwar and Shanshan Liang and J{\"{o}}rg Hakenberg and Chitta Baral}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Synthesis of Pharmacokinetic Pathways through Knowledge Acquisition and Automated Reasoning}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {465--476}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/tari.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/TariALHB10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/ThachukMRMSC10, author = {Chris Thachuk and J{\'{a}}n Manuch and Arash Rafiey and Leigh{-}Anne Mathieson and Ladislav Stacho and Anne Condon}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {An Algorithm for the Energy Barrier Problem Without Pseudoknots and Temporary Arcs}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {108--119}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/thachuk.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/ThachukMRMSC10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/ThomsonMHMESWMGKSTGH10, author = {Glenys Thomson and Nishanth Marthandan and Jill A. Hollenbach and Steven J. Mack and Henry A. Erlich and Richard M. Single and Matthew J. Waller and Steven G. E. Marsh and Paula A. Guidry and David R. Karp and Richard H. Scheuermann and Susan D. Thompson and David N. Glass and Wolfgang Helmberg}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Sequence Feature Variant Type {(SFVT)} Analysis of the {HLA} Genetic Association in Juvenile Idiopathic Arthritis}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {359--370}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/thomson.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/ThomsonMHMESWMGKSTGH10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/VenkatramanYBDT10, author = {Lakshmi Venkatraman and Hanry Yu and Sourav S. Bhowmick and C. Forbes Dewey Jr. and Lisa Tucker{-}Kellogg}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {The Steady States and Dynamics of Urokinase-mediated Plasmin Activation}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {190--199}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/venkatraman.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/VenkatramanYBDT10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/X10, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Preface}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/preface.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/X10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/YavasKOGL10, author = {G{\"{o}}khan Yavas and Mehmet Koyut{\"{u}}rk and Z. Meral {\"{O}}zsoyoglu and Meetha P. Gould and Thomas LaFramboise}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {{COKGEN:} {A} Software for the Identification of Rare Copy Number Variation from {SNP} Microarrays}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {371--382}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/yavas.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/YavasKOGL10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/psb/2010, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/}, isbn = {978-981-4295-29-1}, timestamp = {Fri, 05 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/psb/2010.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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