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@inproceedings{DBLP:conf/ismb/AbeelSRP08,
  author       = {Thomas Abeel and
                  Yvan Saeys and
                  Pierre Rouz{\'{e}} and
                  Yves Van de Peer},
  title        = {ProSOM: core promoter prediction based on unsupervised clustering
                  of {DNA} physical profiles},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {24--31},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn172},
  doi          = {10.1093/BIOINFORMATICS/BTN172},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/AbeelSRP08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/AlonDHHS08,
  author       = {Noga Alon and
                  Phuong Dao and
                  Iman Hajirasouliha and
                  Fereydoun Hormozdiari and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Biomolecular network motif counting and discovery by color coding},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {241--249},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn163},
  doi          = {10.1093/BIOINFORMATICS/BTN163},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/AlonDHHS08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/BaldiB08,
  author       = {Pierre Baldi and
                  Ryan W. Benz},
  title        = {BLASTing small molecules - statistics and extreme statistics of chemical
                  similarity scores},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {357--365},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn187},
  doi          = {10.1093/BIOINFORMATICS/BTN187},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/BaldiB08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/BandeiraOMP08,
  author       = {Nuno Bandeira and
                  Jesper V. Olsen and
                  Matthias Mann and
                  Pavel A. Pevzner},
  title        = {Multi-spectra peptide sequencing and its applications to multistage
                  mass spectrometry},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {416--423},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn184},
  doi          = {10.1093/BIOINFORMATICS/BTN184},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/BandeiraOMP08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/BansalE08,
  author       = {Mukul S. Bansal and
                  Oliver Eulenstein},
  title        = {The multiple gene duplication problem revisited},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {132--138},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn150},
  doi          = {10.1093/BIOINFORMATICS/BTN150},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/BansalE08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/CaoJG08,
  author       = {Yiqun Cao and
                  Tao Jiang and
                  Thomas Girke},
  title        = {A maximum common substructure-based algorithm for searching and predicting
                  drug-like compounds},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {366--374},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn186},
  doi          = {10.1093/BIOINFORMATICS/BTN186},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/CaoJG08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/CostaRHS08,
  author       = {Ivan G. Costa and
                  Stefan Roepcke and
                  Christoph Hafemeister and
                  Alexander Schliep},
  title        = {Inferring differentiation pathways from gene expression},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {156--164},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn153},
  doi          = {10.1093/BIOINFORMATICS/BTN153},
  timestamp    = {Sat, 19 Oct 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/CostaRHS08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/DittrichKRDM08,
  author       = {Marcus T. Dittrich and
                  Gunnar W. Klau and
                  Andreas Rosenwald and
                  Thomas Dandekar and
                  Tobias M{\"{u}}ller},
  title        = {Identifying functional modules in protein-protein interaction networks:
                  an integrated exact approach},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {223--231},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn161},
  doi          = {10.1093/BIOINFORMATICS/BTN161},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/DittrichKRDM08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/DoFB08,
  author       = {Chuong B. Do and
                  Chuan{-}Sheng Foo and
                  Serafim Batzoglou},
  title        = {A max-margin model for efficient simultaneous alignment and folding
                  of {RNA} sequences},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {68--76},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn177},
  doi          = {10.1093/BIOINFORMATICS/BTN177},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/DoFB08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/FromerY08,
  author       = {Menachem Fromer and
                  Chen Yanover},
  title        = {A computational framework to empower probabilistic protein design},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {214--222},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn168},
  doi          = {10.1093/BIOINFORMATICS/BTN168},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/FromerY08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/GeorgievKRRD08,
  author       = {Ivelin Georgiev and
                  Daniel A. Keedy and
                  Jane S. Richardson and
                  David C. Richardson and
                  Bruce Randall Donald},
  title        = {Algorithm for backrub motions in protein design},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {196--204},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn169},
  doi          = {10.1093/BIOINFORMATICS/BTN169},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/GeorgievKRRD08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/HajirasoulihaHSB08,
  author       = {Iman Hajirasouliha and
                  Fereydoun Hormozdiari and
                  S{\"{u}}leyman Cenk Sahinalp and
                  Inan{\c{c}} Birol},
  title        = {Optimal pooling for genome re-sequencing with ultra-high-throughput
                  short-read technologies},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {32--40},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn173},
  doi          = {10.1093/BIOINFORMATICS/BTN173},
  timestamp    = {Mon, 16 Sep 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/HajirasoulihaHSB08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/HoSRC08,
  author       = {Joshua Wing Kei Ho and
                  Maurizio Stefani and
                  Cristobal G. dos Remedios and
                  Michael A. Charleston},
  title        = {Differential variability analysis of gene expression and its application
                  to human diseases},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {390--398},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn142},
  doi          = {10.1093/BIOINFORMATICS/BTN142},
  timestamp    = {Wed, 27 Nov 2019 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/HoSRC08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/HsuCKLHC08,
  author       = {Chun{-}Nan Hsu and
                  Yu{-}Ming Chang and
                  Cheng{-}Ju Kuo and
                  Yu{-}Shi Lin and
                  Han{-}Shen Huang and
                  I{-}Fang Chung},
  title        = {Integrating high dimensional bi-directional parsing models for gene
                  mention tagging},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {286--294},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn183},
  doi          = {10.1093/BIOINFORMATICS/BTN183},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/HsuCKLHC08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/HuttenhowerT08,
  author       = {Curtis Huttenhower and
                  Olga G. Troyanskaya},
  title        = {Assessing the functional structure of genomic data},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {330--338},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn160},
  doi          = {10.1093/BIOINFORMATICS/BTN160},
  timestamp    = {Wed, 07 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/HuttenhowerT08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/KlammerRBMN08,
  author       = {Aaron A. Klammer and
                  Sheila M. Reynolds and
                  Jeff A. Bilmes and
                  Michael J. MacCoss and
                  William Stafford Noble},
  title        = {Modeling peptide fragmentation with dynamic Bayesian networks for
                  peptide identification},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {348--356},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn189},
  doi          = {10.1093/BIOINFORMATICS/BTN189},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/KlammerRBMN08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/KlingerKFHF08,
  author       = {Roman Klinger and
                  Corinna Kol{\'{a}}rik and
                  Juliane Fluck and
                  Martin Hofmann{-}Apitius and
                  Christoph M. Friedrich},
  title        = {Detection of {IUPAC} and IUPAC-like chemical names},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {268--276},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn181},
  doi          = {10.1093/BIOINFORMATICS/BTN181},
  timestamp    = {Fri, 30 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/KlingerKFHF08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/KnijnenburgWR08,
  author       = {Theo A. Knijnenburg and
                  Lodewyk F. A. Wessels and
                  Marcel J. T. Reinders},
  title        = {Combinatorial influence of environmental parameters on transcription
                  factor activity},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {172--181},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn155},
  doi          = {10.1093/BIOINFORMATICS/BTN155},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/KnijnenburgWR08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/LeeCB08,
  author       = {Seunghak Lee and
                  Elango Cheran and
                  Michael Brudno},
  title        = {A robust framework for detecting structural variations in a genome},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {59--67},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn176},
  doi          = {10.1093/BIOINFORMATICS/BTN176},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/LeeCB08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/LeePK08,
  author       = {Thomas J. Lee and
                  Ian T. Paulsen and
                  Peter D. Karp},
  title        = {Annotation-based inference of transporter function},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {259--267},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn180},
  doi          = {10.1093/BIOINFORMATICS/BTN180},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/LeePK08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/LemoineLF08,
  author       = {Fr{\'{e}}d{\'{e}}ric Lemoine and
                  Bernard Labedan and
                  Christine Froidevaux},
  title        = {GenoQuery: a new querying module for functional annotation in a genomic
                  warehouse},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {322--329},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn159},
  doi          = {10.1093/BIOINFORMATICS/BTN159},
  timestamp    = {Thu, 25 Mar 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/LemoineLF08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/LiBGXL08,
  author       = {Shuai Cheng Li and
                  Dongbo Bu and
                  Xin Gao and
                  Jinbo Xu and
                  Ming Li},
  title        = {Designing succinct structural alphabets},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {182--189},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn165},
  doi          = {10.1093/BIOINFORMATICS/BTN165},
  timestamp    = {Mon, 03 Jan 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/LiBGXL08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/LinKB08,
  author       = {Tien{-}ho Lin and
                  Naftali Kaminski and
                  Ziv Bar{-}Joseph},
  title        = {Alignment and classification of time series gene expression in clinical
                  studies},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {147--155},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn152},
  doi          = {10.1093/BIOINFORMATICS/BTN152},
  timestamp    = {Fri, 27 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/LinKB08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/LinM08,
  author       = {Yu Lin and
                  Bernard M. E. Moret},
  title        = {Estimating true evolutionary distances under the {DCJ} model},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {114--122},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn148},
  doi          = {10.1093/BIOINFORMATICS/BTN148},
  timestamp    = {Tue, 31 Aug 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/LinM08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/LiuRK08,
  author       = {Jun Liu and
                  Sanjay Ranka and
                  Tamer Kahveci},
  title        = {Classification and feature selection algorithms for multi-class {CGH}
                  data},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {86--95},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn145},
  doi          = {10.1093/BIOINFORMATICS/BTN145},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/LiuRK08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/LoewensteinPFL08,
  author       = {Yaniv Loewenstein and
                  Elon Portugaly and
                  Menachem Fromer and
                  Michal Linial},
  title        = {Efficient algorithms for accurate hierarchical clustering of huge
                  datasets: tackling the entire protein space},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {41--49},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn174},
  doi          = {10.1093/BIOINFORMATICS/BTN174},
  timestamp    = {Sat, 05 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/LoewensteinPFL08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/McIlwainPHS08,
  author       = {Sean McIlwain and
                  David Page and
                  Edward L. Huttlin and
                  Michael R. Sussman},
  title        = {Matching isotopic distributions from metabolically labeled samples},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {339--347},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn190},
  doi          = {10.1093/BIOINFORMATICS/BTN190},
  timestamp    = {Sun, 25 Oct 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/McIlwainPHS08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/McLeodB08,
  author       = {Kenneth McLeod and
                  Albert Burger},
  title        = {Towards the use of argumentation in bioinformatics: a gene expression
                  case study},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {304--312},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn157},
  doi          = {10.1093/BIOINFORMATICS/BTN157},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/McLeodB08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/MontanucciFMC08,
  author       = {Ludovica Montanucci and
                  Piero Fariselli and
                  Pier Luigi Martelli and
                  Rita Casadio},
  title        = {Predicting protein thermostability changes from sequence upon multiple
                  mutations},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {190--195},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn166},
  doi          = {10.1093/BIOINFORMATICS/BTN166},
  timestamp    = {Sat, 19 Oct 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/MontanucciFMC08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/OzgurVER08,
  author       = {Arzucan {\"{O}}zg{\"{u}}r and
                  Thuy Vu and
                  G{\"{u}}nes Erkan and
                  Dragomir R. Radev},
  title        = {Identifying gene-disease associations using centrality on a literature
                  mined gene-interaction network},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {277--285},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn182},
  doi          = {10.1093/BIOINFORMATICS/BTN182},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/OzgurVER08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/QiBFKB08,
  author       = {Yanjun Qi and
                  Fernanda Balem and
                  Christos Faloutsos and
                  Judith Klein{-}Seetharaman and
                  Ziv Bar{-}Joseph},
  title        = {Protein complex identification by supervised graph local clustering},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {250--268},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn164},
  doi          = {10.1093/BIOINFORMATICS/BTN164},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/QiBFKB08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/RapaportBV08,
  author       = {Franck Rapaport and
                  Emmanuel Barillot and
                  Jean{-}Philippe Vert},
  title        = {Classification of arrayCGH data using fused {SVM}},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {375--382},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn188},
  doi          = {10.1093/BIOINFORMATICS/BTN188},
  timestamp    = {Sat, 19 Oct 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/RapaportBV08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/Rosen-ZviAPANSSSPIKZL08,
  author       = {Michal Rosen{-}Zvi and
                  Andr{\'{e}} Altmann and
                  Mattia Prosperi and
                  Ehud Aharoni and
                  Hani Neuvirth and
                  Anders S{\"{o}}nnerborg and
                  Eugen Sch{\"{u}}lter and
                  Daniel Struck and
                  Yardena Peres and
                  Francesca Incardona and
                  Rolf Kaiser and
                  Maurizio Zazzi and
                  Thomas Lengauer},
  title        = {Selecting anti-HIV therapies based on a variety of genomic and clinical
                  factors},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {399--406},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn141},
  doi          = {10.1093/BIOINFORMATICS/BTN141},
  timestamp    = {Wed, 06 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/Rosen-ZviAPANSSSPIKZL08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/SchulzSB08,
  author       = {Stefan Schulz and
                  Holger Stenzhorn and
                  Martin Boeker},
  title        = {The ontology of biological taxa},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {313--321},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn158},
  doi          = {10.1093/BIOINFORMATICS/BTN158},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/SchulzSB08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/SoldatovaAKC08,
  author       = {Larisa N. Soldatova and
                  Wayne Aubrey and
                  Ross D. King and
                  Amanda Clare},
  title        = {The {EXACT} description of biomedical protocols},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {295--303},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn156},
  doi          = {10.1093/BIOINFORMATICS/BTN156},
  timestamp    = {Sat, 19 Oct 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/SoldatovaAKC08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/SonnenburgZPR08,
  author       = {S{\"{o}}ren Sonnenburg and
                  Alexander Zien and
                  Petra Philips and
                  Gunnar R{\"{a}}tsch},
  title        = {POIMs: positional oligomer importance matrices - understanding support
                  vector machine-based signal detectors},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {6--14},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn170},
  doi          = {10.1093/BIOINFORMATICS/BTN170},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/SonnenburgZPR08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/StojmirovicGAY08,
  author       = {Aleksandar Stojmirovic and
                  E. Michael Gertz and
                  Stephen F. Altschul and
                  Yi{-}Kuo Yu},
  title        = {The effectiveness of position- and composition-specific gap costs
                  for protein similarity searches},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {15--23},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn171},
  doi          = {10.1093/BIOINFORMATICS/BTN171},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/StojmirovicGAY08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/ThanSIN08,
  author       = {Cuong Than and
                  R. Sugino and
                  Hideki Innan and
                  Luay Nakhleh},
  title        = {Efficient inference of bacterial strain trees from genome-scale multilocus
                  data},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {123--131},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn149},
  doi          = {10.1093/BIOINFORMATICS/BTN149},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/ThanSIN08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/ValenciaC08,
  author       = {Alfonso Valencia and
                  Ildefonso Cases},
  title        = {Editorial},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn204},
  doi          = {10.1093/BIOINFORMATICS/BTN204},
  timestamp    = {Wed, 24 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/ValenciaC08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/VaughanCRLGTKP08,
  author       = {Ashley Vaughan and
                  Sum{-}Ying Chiu and
                  Gowthaman Ramasamy and
                  Ling Li and
                  Malcolm J. Gardner and
                  Alice S. Tarun and
                  Stefan H. I. Kappe and
                  Xinxia Peng},
  title        = {Assessment and improvement of the \emph{Plasmodium yoelii yoelii}
                  genome annotation through comparative analysis},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {383--389},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn140},
  doi          = {10.1093/BIOINFORMATICS/BTN140},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/VaughanCRLGTKP08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/WangZWLYW08,
  author       = {Yuan Wang and
                  Xiaobo Zhou and
                  Honghui Wang and
                  King C. Li and
                  Lixiu Yao and
                  Stephen T. C. Wong},
  title        = {Reversible jump {MCMC} approach for peak identification for stroke
                  {SELDI} mass spectrometry using mixture model},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {407--413},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn143},
  doi          = {10.1093/BIOINFORMATICS/BTN143},
  timestamp    = {Sat, 19 Oct 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/WangZWLYW08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/WardB08,
  author       = {Lucas D. Ward and
                  Harmen J. Bussemaker},
  title        = {Predicting functional transcription factor binding through alignment-free
                  and affinity-based analysis of orthologous promoter sequences},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {165--171},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn154},
  doi          = {10.1093/BIOINFORMATICS/BTN154},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/WardB08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/WongR08,
  author       = {Simon Wong and
                  Mark A. Ragan},
  title        = {{MACHOS:} Markov clusters of homologous subsequences},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {77--85},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn144},
  doi          = {10.1093/BIOINFORMATICS/BTN144},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/WongR08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/X08,
  title        = {{ISMB} 2008 Organization},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn304},
  doi          = {10.1093/BIOINFORMATICS/BTN304},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/X08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/XieWC08,
  author       = {Minzhu Xie and
                  Jianxin Wang and
                  Jianer Chen},
  title        = {A model of higher accuracy for the individual haplotyping problem
                  based on weighted {SNP} fragments and genotype with errors},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {105--113},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn147},
  doi          = {10.1093/BIOINFORMATICS/BTN147},
  timestamp    = {Fri, 21 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/XieWC08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/XiongPB08,
  author       = {Fei Xiong and
                  Gopal Pandurangan and
                  Chris Bailey{-}Kellogg},
  title        = {Contact replacement for {NMR} resonance assignment},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {205--213},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn167},
  doi          = {10.1093/BIOINFORMATICS/BTN167},
  timestamp    = {Sat, 09 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/XiongPB08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/XuZZ08,
  author       = {Yunpen Xu and
                  Xuefeng Zhou and
                  Weixiong Zhang},
  title        = {MicroRNA prediction with a novel ranking algorithm based on random
                  walks},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {50--58},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn175},
  doi          = {10.1093/BIOINFORMATICS/BTN175},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/XuZZ08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/YamanishiAGHK08,
  author       = {Yoshihiro Yamanishi and
                  Michihiro Araki and
                  Alex Gutteridge and
                  Wataru Honda and
                  Minoru Kanehisa},
  title        = {Prediction of drug-target interaction networks from the integration
                  of chemical and genomic spaces},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {232--240},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn162},
  doi          = {10.1093/BIOINFORMATICS/BTN162},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/YamanishiAGHK08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/YassourKJF08,
  author       = {Moran Yassour and
                  Tommy Kaplan and
                  Ariel Jaimovich and
                  Nir Friedman},
  title        = {Nucleosome positioning from tiling microarray data},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {139--146},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn151},
  doi          = {10.1093/BIOINFORMATICS/BTN151},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/YassourKJF08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/ZhengZAS08,
  author       = {Chunfang Zheng and
                  Qian Zhu and
                  Zaky Adam and
                  David Sankoff},
  title        = {Guided genome halving: hardness, heuristics and the history of the
                  Hemiascomycetes},
  booktitle    = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages        = {96--104},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn146},
  doi          = {10.1093/BIOINFORMATICS/BTN146},
  timestamp    = {Sat, 26 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/ZhengZAS08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/ismb/2008,
  title        = {Proceedings 16th International Conference on Intelligent Systems for
                  Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  year         = {2008},
  timestamp    = {Mon, 04 Aug 2008 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/2008.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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