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@inproceedings{DBLP:conf/ismb/AokiUYKAM04,
  author       = {Kiyoko F. Aoki and
                  Nobuhisa Ueda and
                  Atsuko Yamaguchi and
                  Minoru Kanehisa and
                  Tatsuya Akutsu and
                  Hiroshi Mamitsuka},
  title        = {Application of a new probabilistic model for recognizing complex patterns
                  in glycans},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {6--14},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth916},
  doi          = {10.1093/BIOINFORMATICS/BTH916},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/AokiUYKAM04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/Bar-JosephFGSR04,
  author       = {Ziv Bar{-}Joseph and
                  Shlomit Farkash and
                  David K. Gifford and
                  Itamar Simon and
                  Roni Rosenfeld},
  title        = {Deconvolving cell cycle expression data with complementary information},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {23--30},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth924},
  doi          = {10.1093/BIOINFORMATICS/BTH924},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/Bar-JosephFGSR04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/BaralCTTJB04,
  author       = {Chitta Baral and
                  Karen Chancellor and
                  Tran Hoai Nam and
                  Nhan Tran and
                  Anna M. Joy and
                  Michael E. Berens},
  title        = {A knowledge based approach for representing and reasoning about signaling
                  networks},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {15--22},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth918},
  doi          = {10.1093/BIOINFORMATICS/BTH918},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/BaralCTTJB04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/BejeranoHB04,
  author       = {Gill Bejerano and
                  David Haussler and
                  Mathieu Blanchette},
  title        = {Into the heart of darkness: large-scale clustering of human non-coding
                  {DNA}},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {40--48},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth946},
  doi          = {10.1093/BIOINFORMATICS/BTH946},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/BejeranoHB04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/BernGMY04,
  author       = {Marshall W. Bern and
                  David Goldberg and
                  W. Hayes McDonald and
                  John R. Yates III},
  title        = {Automatic Quality Assessment of Peptide Tandem Mass Spectra},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {49--54},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth947},
  doi          = {10.1093/BIOINFORMATICS/BTH947},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/BernGMY04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/BetelIH04,
  author       = {Doron Betel and
                  Ruth Isserlin{-}Weinberger and
                  Christopher W. V. Hogue},
  title        = {Analysis of domain correlations in yeast protein complexes},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {55--62},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth903},
  doi          = {10.1093/BIOINFORMATICS/BTH903},
  timestamp    = {Sun, 25 Oct 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/BetelIH04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/BoulakiaLSGRBF04,
  author       = {Sarah Cohen Boulakia and
                  S{\'{e}}verine Lair and
                  Nicolas Stransky and
                  St{\'{e}}phane Graziani and
                  Fran{\c{c}}ois Radvanyi and
                  Emmanuel Barillot and
                  Christine Froidevaux},
  title        = {Selecting biomedical data sources according to user preferences},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {86--93},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth949},
  doi          = {10.1093/BIOINFORMATICS/BTH949},
  timestamp    = {Sat, 19 Oct 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/BoulakiaLSGRBF04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/CapriottiFC04,
  author       = {Emidio Capriotti and
                  Piero Fariselli and
                  Rita Casadio},
  title        = {A neural-network-based method for predicting protein stability changes
                  upon single point mutations},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {63--68},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth928},
  doi          = {10.1093/BIOINFORMATICS/BTH928},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/CapriottiFC04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/CasteloG04,
  author       = {Robert Castelo and
                  Roderic Guig{\'{o}}},
  title        = {Splice site identification by idlBNs},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {69--76},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth932},
  doi          = {10.1093/BIOINFORMATICS/BTH932},
  timestamp    = {Wed, 25 Sep 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/CasteloG04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/ChenB04,
  author       = {Shann{-}Ching Chen and
                  Ivet Bahar},
  title        = {Mining frequent patterns in protein structures: a study of protease
                  families},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {77--85},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth912},
  doi          = {10.1093/BIOINFORMATICS/BTH912},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/ChenB04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/CoinD04,
  author       = {Lachlan James M. Coin and
                  Richard Durbin},
  title        = {Improved techniques for the identification of pseudogenes},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {94--100},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth942},
  doi          = {10.1093/BIOINFORMATICS/BTH942},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/CoinD04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/DieterichRV04,
  author       = {Christoph Dieterich and
                  Sven Rahmann and
                  Martin Vingron},
  title        = {Functional inference from non-random distributions of conserved predicted
                  transcription factor binding sites},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {109--115},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth908},
  doi          = {10.1093/BIOINFORMATICS/BTH908},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/DieterichRV04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/DopazoSD04,
  author       = {Hern{\'{a}}n Dopazo and
                  Javier Santoyo and
                  Joaqu{\'{\i}}n Dopazo},
  title        = {Phylogenomics and the number of characters required for obtaining
                  an accurate phylogeny of eukaryote model species},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {116--121},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth902},
  doi          = {10.1093/BIOINFORMATICS/BTH902},
  timestamp    = {Sun, 25 Oct 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/DopazoSD04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/EnoshFBH04,
  author       = {Angela Enosh and
                  Sarel Jacob Fleishman and
                  Nir Ben{-}Tal and
                  Dan Halperin},
  title        = {Assigning transmembrane segments to helices in intermediate-resolution
                  structures},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {122--129},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth939},
  doi          = {10.1093/BIOINFORMATICS/BTH939},
  timestamp    = {Thu, 15 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/EnoshFBH04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/GeorgeSTAS04,
  author       = {Richard A. George and
                  Ruth V. Spriggs and
                  Janet M. Thornton and
                  Bissan Al{-}Lazikani and
                  Mark B. Swindells},
  title        = {{SCOPEC:} a database of protein catalytic domains},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {130--136},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth948},
  doi          = {10.1093/BIOINFORMATICS/BTH948},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/GeorgeSTAS04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/GreenspanG04,
  author       = {Gideon Greenspan and
                  Dan Geiger},
  title        = {High density linkage disequilibrium mapping using models of haplotype
                  block variation},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {137--144},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth907},
  doi          = {10.1093/BIOINFORMATICS/BTH907},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/GreenspanG04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/GunduzYG04,
  author       = {Cigdem Gunduz and
                  B{\"{u}}lent Yener and
                  S. Humayun Gultekin},
  title        = {The cell graphs of cancer},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {145--151},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth933},
  doi          = {10.1093/BIOINFORMATICS/BTH933},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/GunduzYG04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/HeidaHMHKT04,
  author       = {Naohiko Heida and
                  Yoshikazu Hasegawa and
                  Yoshiki Mochizuki and
                  Katsura Hirosawa and
                  Akihiko Konagaya and
                  Tetsuro Toyoda},
  title        = {TraitMap: an XML-based genetic-map database combining multigenic loci
                  and biomolecular networks},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {152--160},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth940},
  doi          = {10.1093/BIOINFORMATICS/BTH940},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/HeidaHMHKT04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/HoonMIKONM04,
  author       = {Michiel J. L. de Hoon and
                  Yuko Makita and
                  Seiya Imoto and
                  Kazuo Kobayashi and
                  Naotake Ogasawara and
                  Kenta Nakai and
                  Satoru Miyano},
  title        = {Predicting gene regulation by sigma factors in Bacillus subtilis from
                  genome-wide data},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {101--108},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth927},
  doi          = {10.1093/BIOINFORMATICS/BTH927},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/HoonMIKONM04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/JojicJMGSHH04,
  author       = {Vladimir Jojic and
                  Nebojsa Jojic and
                  Christopher Meek and
                  Dan Geiger and
                  Adam C. Siepel and
                  David Haussler and
                  David Heckerman},
  title        = {Efficient approximations for learning phylogenetic {HMM} models from
                  data},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {161--168},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth917},
  doi          = {10.1093/BIOINFORMATICS/BTH917},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/JojicJMGSHH04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/JoslynMFH04,
  author       = {Cliff A. Joslyn and
                  Susan M. Mniszewski and
                  Andy W. Fulmer and
                  Gary Heaton},
  title        = {The Gene Ontology Categorizer},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {169--177},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth921},
  doi          = {10.1093/BIOINFORMATICS/BTH921},
  timestamp    = {Tue, 20 Aug 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/JoslynMFH04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/KharchenkoVC04,
  author       = {Peter V. Kharchenko and
                  Dennis Vitkup and
                  George M. Church},
  title        = {Filling gaps in a metabolic network using expression information},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {178--185},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth930},
  doi          = {10.1093/BIOINFORMATICS/BTH930},
  timestamp    = {Fri, 30 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/KharchenkoVC04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/KlauRSVR04,
  author       = {Gunnar W. Klau and
                  Sven Rahmann and
                  Alexander Schliep and
                  Martin Vingron and
                  Knut Reinert},
  title        = {Optimal robust non-unique probe selection using Integer Linear Programming},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {186--193},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth936},
  doi          = {10.1093/BIOINFORMATICS/BTH936},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/KlauRSVR04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/KostkaS04,
  author       = {Dennis Kostka and
                  Rainer Spang},
  title        = {Finding disease specific alterations in the co-expression of genes},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {194--199},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth909},
  doi          = {10.1093/BIOINFORMATICS/BTH909},
  timestamp    = {Tue, 29 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/KostkaS04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/KoyuturkGS04,
  author       = {Mehmet Koyut{\"{u}}rk and
                  Ananth Grama and
                  Wojciech Szpankowski},
  title        = {An efficient algorithm for detecting frequent subgraphs in biological
                  networks},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {200--207},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth919},
  doi          = {10.1093/BIOINFORMATICS/BTH919},
  timestamp    = {Fri, 30 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/KoyuturkGS04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/LiG04,
  author       = {Hongzhe Li and
                  Jiang Gui},
  title        = {Partial Cox regression analysis for high-dimensional microarray gene
                  expression data},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {208--215},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth900},
  doi          = {10.1093/BIOINFORMATICS/BTH900},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/LiG04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/LunterH04,
  author       = {Gerton Lunter and
                  Jotun Hein},
  title        = {A nucleotide substitution model with nearest-neighbour interactions},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {216--223},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth901},
  doi          = {10.1093/BIOINFORMATICS/BTH901},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/LunterH04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/MacCallum04,
  author       = {Robert M. MacCallum},
  title        = {Striped sheets and protein contact prediction},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {224--231},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth913},
  doi          = {10.1093/BIOINFORMATICS/BTH913},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/MacCallum04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/MiddendorfKWFL04,
  author       = {Manuel Middendorf and
                  Anshul Kundaje and
                  Chris Wiggins and
                  Yoav Freund and
                  Christina S. Leslie},
  title        = {Predicting genetic regulatory response using classification},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {232--240},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth923},
  doi          = {10.1093/BIOINFORMATICS/BTH923},
  timestamp    = {Wed, 17 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/MiddendorfKWFL04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/MikaR04,
  author       = {Sven Mika and
                  Burkhard Rost},
  title        = {Protein names precisely peeled off free text},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {241--247},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth904},
  doi          = {10.1093/BIOINFORMATICS/BTH904},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/MikaR04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/MonodGCL04,
  author       = {Mehdi Yousfi Monod and
                  V{\'{e}}ronique Giudicelli and
                  Denys Chaume and
                  Marie{-}Paule Lefranc},
  title        = {IMGT/JunctionAnalysis: the first tool for the analysis of the immunoglobulin
                  and {T} cell receptor complex {V-J} and {V-D-J} JUNCTIONs},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {379--385},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth945},
  doi          = {10.1093/BIOINFORMATICS/BTH945},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/MonodGCL04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/NachmanRF04,
  author       = {Iftach Nachman and
                  Aviv Regev and
                  Nir Friedman},
  title        = {Inferring quantitative models of regulatory networks from expression
                  data},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {248--256},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth941},
  doi          = {10.1093/BIOINFORMATICS/BTH941},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/NachmanRF04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/RacunasSAF04,
  author       = {Stephen A. Racunas and
                  N. H. Shah and
                  Istv{\'{a}}n Albert and
                  Nina V. Fedoroff},
  title        = {HyBrow: a prototype system for computer-aided hypothesis evaluation},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {257--264},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth905},
  doi          = {10.1093/BIOINFORMATICS/BTH905},
  timestamp    = {Fri, 06 Dec 2019 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/RacunasSAF04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/RaphaelP04,
  author       = {Benjamin J. Raphael and
                  Pavel A. Pevzner},
  title        = {Reconstructing tumor amplisomes},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {265--273},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth931},
  doi          = {10.1093/BIOINFORMATICS/BTH931},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/RaphaelP04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/ReissS04,
  author       = {David J. Reiss and
                  Benno Schwikowski},
  title        = {Predicting protein-peptide interactions via a network-based motif
                  sampler},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {274--282},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth922},
  doi          = {10.1093/BIOINFORMATICS/BTH922},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/ReissS04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/SchliepSS04,
  author       = {Alexander Schliep and
                  Christine Steinhoff and
                  Alexander Sch{\"{o}}nhuth},
  title        = {Robust inference of groups in gene expression time-courses using mixtures
                  of HMMs},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {283--289},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth937},
  doi          = {10.1093/BIOINFORMATICS/BTH937},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/SchliepSS04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/SrinivasanL04,
  author       = {Padmini Srinivasan and
                  Bisharah Libbus},
  title        = {Mining {MEDLINE} for implicit links between dietary substances and
                  diseases},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {290--296},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth914},
  doi          = {10.1093/BIOINFORMATICS/BTH914},
  timestamp    = {Sun, 25 Oct 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/SrinivasanL04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/SrinivasanZKAB04,
  author       = {Kellathur N. Srinivasan and
                  Guanglan Zhang and
                  Asif M. Khan and
                  J. Thomas August and
                  Vladimir Brusic},
  title        = {Prediction of class {I} T-cell epitopes: evidence of presence of immunological
                  hot spots inside antigens},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {297--302},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth943},
  doi          = {10.1093/BIOINFORMATICS/BTH943},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/SrinivasanZKAB04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/StevensTWOSLGBT04,
  author       = {Robert D. Stevens and
                  Hannah J. Tipney and
                  Chris Wroe and
                  Thomas M. Oinn and
                  Martin Senger and
                  Phillip W. Lord and
                  Carole A. Goble and
                  Andy Brass and
                  M. Tassabehji},
  title        = {Exploring Williams-Beuren syndrome using \({}^{\mbox{my}}\)Grid},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {303--310},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth944},
  doi          = {10.1093/BIOINFORMATICS/BTH944},
  timestamp    = {Fri, 30 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/StevensTWOSLGBT04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/SzklarczykH04,
  author       = {Radek Szklarczyk and
                  Jaap Heringa},
  title        = {Tracking repeats using significance and transitivity},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {311--317},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth911},
  doi          = {10.1093/BIOINFORMATICS/BTH911},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/SzklarczykH04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/ThorntonGB04,
  author       = {Janet M. Thornton and
                  David R. Gilbert and
                  Catherine Brooksbank},
  title        = {{ISMB/ECCB} 2004},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {1--2},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth950},
  doi          = {10.1093/BIOINFORMATICS/BTH950},
  timestamp    = {Sun, 02 Jun 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/ThorntonGB04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/ThorntonGB04a,
  author       = {Janet M. Thornton and
                  David R. Gilbert and
                  Catherine Brooksbank},
  title        = {{ISMB/ECCB} 2004 Organization},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {3--5},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth951},
  doi          = {10.1093/BIOINFORMATICS/BTH951},
  timestamp    = {Wed, 24 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/ThorntonGB04a.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/TrinhMS04,
  author       = {Phil Trinh and
                  Aoife McLysaght and
                  David Sankoff},
  title        = {Genomic features in the breakpoint regions between syntenic blocks},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {318--325},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth934},
  doi          = {10.1093/BIOINFORMATICS/BTH934},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/TrinhMS04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/TsudaN04,
  author       = {Koji Tsuda and
                  William Stafford Noble},
  title        = {Learning kernels from biological networks by maximizing entropy},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {326--333},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth906},
  doi          = {10.1093/BIOINFORMATICS/BTH906},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/TsudaN04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/WeinbergR04,
  author       = {Zasha Weinberg and
                  Walter L. Ruzzo},
  title        = {Exploiting conserved structure for faster annotation of non-coding
                  RNAs without loss of accuracy},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {334--341},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth925},
  doi          = {10.1093/BIOINFORMATICS/BTH925},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/WeinbergR04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/WieserKA04,
  author       = {Daniela Wieser and
                  Ernst Kretschmann and
                  Rolf Apweiler},
  title        = {Filtering erroneous protein annotation},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {342--347},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth938},
  doi          = {10.1093/BIOINFORMATICS/BTH938},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/WieserKA04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/WoodhamsH04,
  author       = {M. D. Woodhams and
                  Michael D. Hendy},
  title        = {Reconstructing phylogeny by Quadratically Approximated Maximum Likelihood},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {348--354},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth926},
  doi          = {10.1093/BIOINFORMATICS/BTH926},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/WoodhamsH04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/XuBPTLLM04,
  author       = {Weijia Xu and
                  Willard J. Briggs and
                  Joanna Padolina and
                  Ruth E. Timme and
                  Wenguo Liu and
                  C. Randal Linder and
                  Daniel P. Miranker},
  title        = {Using MoBIoS' scalable genome join to find conserved primer pair candidates
                  between two genomes},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {355--362},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth929},
  doi          = {10.1093/BIOINFORMATICS/BTH929},
  timestamp    = {Fri, 30 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/XuBPTLLM04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/YamanishiVK04,
  author       = {Yoshihiro Yamanishi and
                  Jean{-}Philippe Vert and
                  Minoru Kanehisa},
  title        = {Protein network inference from multiple genomic data: a supervised
                  approach},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {363--370},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth910},
  doi          = {10.1093/BIOINFORMATICS/BTH910},
  timestamp    = {Fri, 30 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/YamanishiVK04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/YanDH04,
  author       = {Changhui Yan and
                  Drena Dobbs and
                  Vasant G. Honavar},
  title        = {A two-stage classifier for identification of protein-protein interface
                  residues},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {371--378},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth920},
  doi          = {10.1093/BIOINFORMATICS/BTH920},
  timestamp    = {Fri, 30 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/YanDH04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/ZakiNBB04,
  author       = {Mohammed Javeed Zaki and
                  Vinay Nadimpally and
                  Deb Bardhan and
                  Chris Bystroff},
  title        = {Predicting protein folding pathways},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {386--393},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth935},
  doi          = {10.1093/BIOINFORMATICS/BTH935},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/ZakiNBB04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/ismb/2004,
  title        = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  year         = {2004},
  timestamp    = {Fri, 03 Sep 2004 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/2004.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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