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@inproceedings{DBLP:conf/bionlp/AbachaMZSLD21,
author = {Asma Ben Abacha and
Yassine Mrabet and
Yuhao Zhang and
Chaitanya Shivade and
Curtis P. Langlotz and
Dina Demner{-}Fushman},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {Overview of the {MEDIQA} 2021 Shared Task on Summarization in the
Medical Domain},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {74--85},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.8},
doi = {10.18653/V1/2021.BIONLP-1.8},
timestamp = {Thu, 25 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/AbachaMZSLD21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/AlrowiliS21,
author = {Sultan Alrowili and
Vijay Shanker},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {BioM-Transformers: Building Large Biomedical Language Models with
BERT, {ALBERT} and {ELECTRA}},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {221--227},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.24},
doi = {10.18653/V1/2021.BIONLP-1.24},
timestamp = {Fri, 25 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/AlrowiliS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/AraujoCATP21,
author = {Vladimir Araujo and
Andr{\'{e}}s Carvallo and
Carlos Aspillaga and
Camilo Thorne and
Denis Parra},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {Stress Test Evaluation of Biomedical Word Embeddings},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {119--125},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.13},
doi = {10.18653/V1/2021.BIONLP-1.13},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/AraujoCATP21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/BalumuriBS21,
author = {Spandana Balumuri and
Sony Bachina and
Sowmya Kamath S.},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {SB{\_}NITK at {MEDIQA} 2021: Leveraging Transfer Learning for Question
Summarization in Medical Domain},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {273--279},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.31},
doi = {10.18653/V1/2021.BIONLP-1.31},
timestamp = {Sat, 21 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/BalumuriBS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/CanBDNNNHT21,
author = {Duy{-}Cat Can and
Vo Nguyen Quoc Bao and
Quoc{-}Hung Duong and
Minh{-}Quang Nguyen and
Huy{-}Son Nguyen and
Linh Nguyen Tran Ngoc and
Quang{-}Thuy Ha and
Mai{-}Vu Tran},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {UETrice at {MEDIQA} 2021: {A} Prosper-thy-neighbour Extractive Multi-document
Summarization Model},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {311--319},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.36},
doi = {10.18653/V1/2021.BIONLP-1.36},
timestamp = {Fri, 25 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/CanBDNNNHT21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/CenikjEK21,
author = {Gjorgjina Cenikj and
Tome Eftimov and
Barbara Korousic{-}Seljak},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {{SAFFRON:} tranSfer leArning For Food-disease RelatiOn extractioN},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {30--40},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.4},
doi = {10.18653/V1/2021.BIONLP-1.4},
timestamp = {Fri, 25 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/CenikjEK21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/DaiWLZ21,
author = {Songtai Dai and
Quan Wang and
Yajuan Lyu and
Yong Zhu},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {{BDKG} at {MEDIQA} 2021: System Report for the Radiology Report Summarization
Task},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {103--111},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.11},
doi = {10.18653/V1/2021.BIONLP-1.11},
timestamp = {Thu, 02 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/DaiWLZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/DelbrouckZR21,
author = {Jean{-}Benoit Delbrouck and
Cassie Zhang and
Daniel L. Rubin},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {{QIAI} at {MEDIQA} 2021: Multimodal Radiology Report Summarization},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {285--290},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.33},
doi = {10.18653/V1/2021.BIONLP-1.33},
timestamp = {Mon, 04 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/DelbrouckZR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/FivezSD21,
author = {Pieter Fivez and
Simon Suster and
Walter Daelemans},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {Scalable Few-Shot Learning of Robust Biomedical Name Representations},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {23--29},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.3},
doi = {10.18653/V1/2021.BIONLP-1.3},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/FivezSD21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/GeroH21,
author = {Zelalem Gero and
Joyce C. Ho},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {Word centrality constrained representation for keyphrase extraction},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {155--161},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.17},
doi = {10.18653/V1/2021.BIONLP-1.17},
timestamp = {Fri, 25 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/GeroH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/HeCH21,
author = {Yifan He and
Mosha Chen and
Songfang Huang},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {damo{\_}nlp at {MEDIQA} 2021: Knowledge-based Preprocessing and Coverage-oriented
Reranking for Medical Question Summarization},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {112--118},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.12},
doi = {10.18653/V1/2021.BIONLP-1.12},
timestamp = {Fri, 25 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/HeCH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/HoganVKBKH21,
author = {William P. Hogan and
Yoshiki Vazquez{-}Baeza and
Yannis Katsis and
Tyler Baldwin and
Ho{-}Cheol Kim and
Chun{-}Nan Hsu},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {{BLAR:} Biomedical Local Acronym Resolver},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {126--130},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.14},
doi = {10.18653/V1/2021.BIONLP-1.14},
timestamp = {Tue, 08 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bionlp/HoganVKBKH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/HoltzappleCM21,
author = {Emilee Holtzapple and
Brent Cochran and
Natasa Miskov{-}Zivanov},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {Context-aware query design combines knowledge and data for efficient
reading and reasoning},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {238--246},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.26},
doi = {10.18653/V1/2021.BIONLP-1.26},
timestamp = {Fri, 25 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/HoltzappleCM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/KanakarajanKS21,
author = {Kamal Raj Kanakarajan and
Bhuvana Kundumani and
Malaikannan Sankarasubbu},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {BioELECTRA: Pretrained Biomedical text Encoder using Discriminators},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {143--154},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.16},
doi = {10.18653/V1/2021.BIONLP-1.16},
timestamp = {Thu, 25 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/KanakarajanKS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/KondadadiMNM21,
author = {Ravi Kondadadi and
Sahil Manchanda and
Jason Ngo and
Ronan McCormack},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {Optum at {MEDIQA} 2021: Abstractive Summarization of Radiology Reports
using simple {BART} Finetuning},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {280--284},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.32},
doi = {10.18653/V1/2021.BIONLP-1.32},
timestamp = {Fri, 25 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/KondadadiMNM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/LeNDNNTVN21,
author = {Hoang{-}Quynh Le and
Quoc{-}An Nguyen and
Quoc{-}Hung Duong and
Minh{-}Quang Nguyen and
Huy{-}Son Nguyen and
Tam Doan Thanh and
Hai{-}Yen Thi Vuong and
Trang M. Nguyen},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {UETfishes at {MEDIQA} 2021: Standing-on-the-Shoulders-of-Giants Model
for Abstractive Multi-answer Summarization},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {328--335},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.38},
doi = {10.18653/V1/2021.BIONLP-1.38},
timestamp = {Fri, 25 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/LeNDNNTVN21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/LeeCZLS21,
author = {Lung{-}Hao Lee and
Po{-}Han Chen and
Yu{-}Xiang Zeng and
Po{-}Lei Lee and
Kuo{-}Kai Shyu},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {{NCUEE-NLP} at {MEDIQA} 2021: Health Question Summarization Using
{PEGASUS} Transformers},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {268--272},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.30},
doi = {10.18653/V1/2021.BIONLP-1.30},
timestamp = {Fri, 25 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/LeeCZLS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/LeeDUH21,
author = {Jooyeon Lee and
Huong Dang and
{\"{O}}zlem Uzuner and
Sam Henry},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {{MNLP} at {MEDIQA} 2021: Fine-Tuning {PEGASUS} for Consumer Health
Question Summarization},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {320--327},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.37},
doi = {10.18653/V1/2021.BIONLP-1.37},
timestamp = {Fri, 25 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/LeeDUH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/LinMDBS21,
author = {Chen Lin and
Timothy A. Miller and
Dmitriy Dligach and
Steven Bethard and
Guergana Savova},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {EntityBERT: Entity-centric Masking Strategy for Model Pretraining
for the Clinical Domain},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {191--201},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.21},
doi = {10.18653/V1/2021.BIONLP-1.21},
timestamp = {Tue, 20 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/LinMDBS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/LiuTCWWS21,
author = {Yang Liu and
Yuanhe Tian and
Tsung{-}Hui Chang and
Song Wu and
Xiang Wan and
Yan Song},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {Exploring Word Segmentation and Medical Concept Recognition for Chinese
Medical Texts},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {213--220},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.23},
doi = {10.18653/V1/2021.BIONLP-1.23},
timestamp = {Sun, 20 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/LiuTCWWS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/MahajanTL21,
author = {Diwakar Mahajan and
Ching{-}Huei Tsou and
Jennifer J. Liang},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {IBMResearch at {MEDIQA} 2021: Toward Improving Factual Correctness
of Radiology Report Abstractive Summarization},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {302--310},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.35},
doi = {10.18653/V1/2021.BIONLP-1.35},
timestamp = {Fri, 25 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/MahajanTL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/MriniDYBCFN21,
author = {Khalil Mrini and
Franck Dernoncourt and
Seunghyun Yoon and
Trung Bui and
Walter Chang and
Emilia Farcas and
Ndapa Nakashole},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {UCSD-Adobe at {MEDIQA} 2021: Transfer Learning and Answer Sentence
Selection for Medical Summarization},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {257--262},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.28},
doi = {10.18653/V1/2021.BIONLP-1.28},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/MriniDYBCFN21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/MullerGWR21,
author = {Mark{-}Christoph M{\"{u}}ller and
Sucheta Ghosh and
Ulrike Wittig and
Maja Rey},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {Word-Level Alignment of Paper Documents with their Electronic Full-Text
Counterparts},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {168--179},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.19},
doi = {10.18653/V1/2021.BIONLP-1.19},
timestamp = {Fri, 25 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/MullerGWR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/PascualLW21,
author = {Damian Pascual and
Sandro Luck and
Roger Wattenhofer},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {Towards BERT-based Automatic {ICD} Coding: Limitations and Opportunities},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {54--63},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.6},
doi = {10.18653/V1/2021.BIONLP-1.6},
timestamp = {Fri, 25 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/PascualLW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/RaghavanLMCS21,
author = {Preethi Raghavan and
Jennifer J. Liang and
Diwakar Mahajan and
Rachita Chandra and
Peter Szolovits},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {emrKBQA: {A} Clinical Knowledge-Base Question Answering Dataset},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {64--73},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.7},
doi = {10.18653/V1/2021.BIONLP-1.7},
timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/RaghavanLMCS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/SangerWL21,
author = {Mario S{\"{a}}nger and
Leon Weber and
Ulf Leser},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {{WBI} at {MEDIQA} 2021: Summarizing Consumer Health Questions with
Generative Transformers},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {86--95},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.9},
doi = {10.18653/V1/2021.BIONLP-1.9},
timestamp = {Fri, 25 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/SangerWL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/SuPV21,
author = {Peng Su and
Yifan Peng and
K. Vijay{-}Shanker},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {Improving {BERT} Model Using Contrastive Learning for Biomedical Relation
Extraction},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {1--10},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.1},
doi = {10.18653/V1/2021.BIONLP-1.1},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bionlp/SuPV21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/SushilSD21,
author = {Madhumita Sushil and
Simon Suster and
Walter Daelemans},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {Are we there yet? Exploring clinical domain knowledge of {BERT} models},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {41--53},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.5},
doi = {10.18653/V1/2021.BIONLP-1.5},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/SushilSD21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/SushilSD21a,
author = {Madhumita Sushil and
Simon Suster and
Walter Daelemans},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {Contextual explanation rules for neural clinical classifiers},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {202--212},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.22},
doi = {10.18653/V1/2021.BIONLP-1.22},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/SushilSD21a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/UjiieIYWA21,
author = {Shogo Ujiie and
Hayate Iso and
Shuntaro Yada and
Shoko Wakamiya and
Eiji Aramaki},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {End-to-end Biomedical Entity Linking with Span-based Dictionary Matching},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {162--167},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.18},
doi = {10.18653/V1/2021.BIONLP-1.18},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/UjiieIYWA21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/WuhrlK21,
author = {Amelie W{\"{u}}hrl and
Roman Klinger},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {Claim Detection in Biomedical Twitter Posts},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {131--142},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.15},
doi = {10.18653/V1/2021.BIONLP-1.15},
timestamp = {Fri, 25 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/WuhrlK21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/XuB21,
author = {Dongfang Xu and
Steven Bethard},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {Triplet-Trained Vector Space and Sieve-Based Search Improve Biomedical
Concept Normalization},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {11--22},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.2},
doi = {10.18653/V1/2021.BIONLP-1.2},
timestamp = {Fri, 25 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/XuB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/XuZHCS21,
author = {Liwen Xu and
Yan Zhang and
Lei Hong and
Yi Cai and
Szui Sung},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {ChicHealth @ {MEDIQA} 2021: Exploring the limits of pre-trained seq2seq
models for medical summarization},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {263--267},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.29},
doi = {10.18653/V1/2021.BIONLP-1.29},
timestamp = {Fri, 25 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/XuZHCS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/YadavSG21,
author = {Shweta Yadav and
Mourad Sarrouti and
Deepak Gupta},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {{NLM} at {MEDIQA} 2021: Transfer Learning-based Approaches for Consumer
Question and Multi-Answer Summarization},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {291--301},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.34},
doi = {10.18653/V1/2021.BIONLP-1.34},
timestamp = {Mon, 27 Mar 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/YadavSG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/YeganovaKCWL21,
author = {Lana Yeganova and
Won Kim and
Donald C. Comeau and
W. John Wilbur and
Zhiyong Lu},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {Measuring the relative importance of full text sections for information
retrieval from scientific literature},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {247--256},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.27},
doi = {10.18653/V1/2021.BIONLP-1.27},
timestamp = {Fri, 25 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/YeganovaKCWL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/YuanLTHH21,
author = {Zheng Yuan and
Yijia Liu and
Chuanqi Tan and
Songfang Huang and
Fei Huang},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {Improving Biomedical Pretrained Language Models with Knowledge},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {180--190},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.20},
doi = {10.18653/V1/2021.BIONLP-1.20},
timestamp = {Mon, 13 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bionlp/YuanLTHH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/ZhuHCFNXW21,
author = {Wei Zhu and
Yilong He and
Ling Chai and
Yunxiao Fan and
Yuan Ni and
Guotong Xie and
Xiaoling Wang},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {paht{\_}nlp @ {MEDIQA} 2021: Multi-grained Query Focused Multi-Answer
Summarization},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {96--102},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.10},
doi = {10.18653/V1/2021.BIONLP-1.10},
timestamp = {Fri, 16 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bionlp/ZhuHCFNXW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/ZhuJ21,
author = {Minghao Zhu and
Keyuan Jiang},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {Semi-Supervised Language Models for Identification of Personal Health
Experiential from Twitter Data: {A} Case for Medication Effects},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {228--237},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.25},
doi = {10.18653/V1/2021.BIONLP-1.25},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bionlp/ZhuJ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/bionlp/2021,
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://aclanthology.org/volumes/2021.bionlp-1/},
isbn = {978-1-954085-40-4},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/2021.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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