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@article{DBLP:journals/nar/AfrasiabiSDMS13,
author = {Cyrus Afrasiabi and
Bushra Samad and
David Dineen and
Christopher Meacham and
Kimmen Sj{\"{o}}lander},
title = {The PhyloFacts {FAT-CAT} web server: ortholog identification and function
prediction using fast approximate tree classification},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {242--248},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt399},
doi = {10.1093/NAR/GKT399},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/AfrasiabiSDMS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AitYM13,
author = {Layal Al Ait and
Zaher Yamak and
Burkhard Morgenstern},
title = {{DIALIGN} at {GOBICS} - multiple sequence alignment using various
sources of external information},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {3--7},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt283},
doi = {10.1093/NAR/GKT283},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/AitYM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AlcantaraOCMCJHFRJGRVLOKHOMTS13,
author = {Rafael Alc{\'{a}}ntara and
Joseph Onwubiko and
Hong Cao and
Paula de Matos and
Jennifer A. Cham and
Julius O. B. Jacobsen and
Gemma L. Holliday and
Julia D. Fischer and
Syed Asad Rahman and
Bijay Jassal and
Mickael Goujon and
Francis Rowland and
Sameer Velankar and
Rodrigo Lopez and
John P. Overington and
Gerard J. Kleywegt and
Henning Hermjakob and
Claire O'Donovan and
Maria Jesus Martin and
Janet M. Thornton and
Christoph Steinbeck},
title = {The {EBI} enzyme portal},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {773--780},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1112},
doi = {10.1093/NAR/GKS1112},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/AlcantaraOCMCJHFRJGRVLOKHOMTS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AndreiniCLR13,
author = {Claudia Andreini and
Gabriele Cavallaro and
Serena Lorenzini and
Antonio Rosato},
title = {MetalPDB: a database of metal sites in biological macromolecular structures},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {312--319},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1063},
doi = {10.1093/NAR/GKS1063},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/AndreiniCLR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AntonovBB13,
author = {Ivan Antonov and
Pavel V. Baranov and
Mark Borodovsky},
title = {GeneTack database: genes with frameshifts in prokaryotic genomes and
eukaryotic mRNA sequences},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {152--156},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1062},
doi = {10.1093/NAR/GKS1062},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/AntonovBB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ArnedoVERSCZ13,
author = {Javier Arnedo and
Coral del Val and
Gabriel Alejandro de Erausquin and
Roc{\'{\i}}o Romero{-}Z{\'{a}}liz and
Dragan Svrakic and
Claude Robert Cloninger and
Igor Zwir},
title = {{PGMRA:} a web server for (phenotype {\texttimes} genotype) many-to-many
relation analysis in {GWAS}},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {142--149},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt496},
doi = {10.1093/NAR/GKT496},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ArnedoVERSCZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AurrecoecheaBBBCDFGGGGHHHIKKLPPRSSWW13,
author = {Cristina Aurrecoechea and
Ana Barreto and
John Brestelli and
Brian P. Brunk and
Shon Cade and
Ryan Doherty and
Steve Fischer and
Bindu Gajria and
Xin Gao and
Alan R. Gingle and
Gregory R. Grant and
Omar S. Harb and
Mark Heiges and
Sufen Hu and
John Iodice and
Jessica C. Kissinger and
Eileen T. Kraemer and
Wei Li and
Deborah F. Pinney and
Brian Pitts and
David S. Roos and
Ganesh Srinivasamoorthy and
Christian J. Stoeckert Jr. and
Haiming Wang and
Susanne Warrenfeltz},
title = {EuPathDB: The Eukaryotic Pathogen database},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {684--691},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1113},
doi = {10.1093/NAR/GKS1113},
timestamp = {Wed, 17 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/AurrecoecheaBBBCDFGGGGHHHIKKLPPRSSWW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BaggerRTKTJWP13,
author = {Frederik Otzen Bagger and
Nicolas Rapin and
Kim Theilgaard{-}M{\"{o}}nch and
Bogumil Kaczkowski and
Lina A. Thoren and
Johan Jendholm and
Ole Winther and
Bo T. Porse},
title = {HemaExplorer: a database of mRNA expression profiles in normal and
malignant haematopoiesis},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {1034--1039},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1021},
doi = {10.1093/NAR/GKS1021},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/BaggerRTKTJWP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BarrettWLEKTMPSHYLZRSDS13,
author = {Tanya Barrett and
Stephen E. Wilhite and
Pierre Ledoux and
Carlos Evangelista and
Irene F. Kim and
Maxim Tomashevsky and
Kimberly A. Marshall and
Katherine H. Phillippy and
Patti M. Sherman and
Michelle Holko and
Andrey Yefanov and
Hyeseung Lee and
Naigong Zhang and
Cynthia L. Robertson and
Nadezhda Serova and
Sean R. Davis and
Alexandra Soboleva},
title = {{NCBI} {GEO:} archive for functional genomics data sets - update},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {991--995},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1193},
doi = {10.1093/NAR/GKS1193},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BarrettWLEKTMPSHYLZRSDS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BarshirBESLL13,
author = {Ruth Barshir and
Omer Basha and
Amir Eluk and
Ilan Y. Smoly and
Alexander Lan and
Esti Yeger Lotem},
title = {The TissueNet database of human tissue protein-protein interactions},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {841--844},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1198},
doi = {10.1093/NAR/GKS1198},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BarshirBESLL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BashaTEL13,
author = {Omer Basha and
Shoval Tirman and
Amir Eluk and
Esti Yeger Lotem},
title = {ResponseNet2.0: revealing signaling and regulatory pathways connecting
your proteins and genes - now with human data},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {198--203},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt532},
doi = {10.1093/NAR/GKT532},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BashaTEL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BasseBBBCHMR13,
author = {Marie Jeanne Basse and
St{\'{e}}phane Betzi and
Rapha{\"{e}}l Bourgeas and
Sofia Bouzidi and
Bernard Ch{\'{e}}trit and
V{\'{e}}ronique Hamon and
Xavier Morelli and
Philippe Roche},
title = {2P2Idb: a structural database dedicated to orthosteric modulation
of protein-protein interactions},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {824--827},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1002},
doi = {10.1093/NAR/GKS1002},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BasseBBBCHMR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BasuFPDKC13,
author = {Siddhartha Basu and
Petra Fey and
Yogesh Pandit and
Robert J. Dodson and
Warren A. Kibbe and
Rex L. Chisholm},
title = {dictyBase 2013: integrating multiple Dictyostelid species},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {676--683},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1064},
doi = {10.1093/NAR/GKS1064},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BasuFPDKC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BellaousovRSM13,
author = {Stanislav Bellaousov and
Jessica S. Reuter and
Matthew G. Seetin and
David H. Mathews},
title = {RNAstructure: web servers for {RNA} secondary structure prediction
and analysis},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {471--474},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt290},
doi = {10.1093/NAR/GKT290},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BellaousovRSM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Benson13,
author = {Gary Benson},
title = {Editorial},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {1--2},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt559},
doi = {10.1093/NAR/GKT559},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Benson13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BensonCCKLOS13,
author = {Dennis A. Benson and
Mark Cavanaugh and
Karen Clark and
Ilene Karsch{-}Mizrachi and
David J. Lipman and
James Ostell and
Eric W. Sayers},
title = {GenBank},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {36--42},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1195},
doi = {10.1093/NAR/GKS1195},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/BensonCCKLOS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BhattacharyaZC13,
author = {Anindya Bhattacharya and
Jesse D. Ziebarth and
Yan Cui},
title = {SomamiR: a database for somatic mutations impacting microRNA function
in cancer},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {977--982},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1138},
doi = {10.1093/NAR/GKS1138},
timestamp = {Mon, 25 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/BhattacharyaZC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BiLTDRO13,
author = {Dexi Bi and
Linmeng Liu and
Cui Tai and
Zixin Deng and
Kumar Rajakumar and
Hong{-}Yu Ou},
title = {SecReT4: a web-based bacterial type {IV} secretion system resource},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {660--665},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1248},
doi = {10.1093/NAR/GKS1248},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BiLTDRO13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BianchiMFHA13,
author = {Valerio Bianchi and
Iolanda Mangone and
Fabrizio Ferr{\`{e}} and
Manuela Helmer{-}Citterich and
Gabriele Ausiello},
title = {webPDBinder: a server for the identification of ligand binding sites
on protein structures},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {308--313},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt457},
doi = {10.1093/NAR/GKT457},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/BianchiMFHA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BlaszczykJKK13,
author = {Maciej Blaszczyk and
Michal Jamr{\'{o}}z and
Sebastian Kmiecik and
Andrzej Kolinski},
title = {CABS-fold: server for the \emph{de novo} and consensus-based prediction
of protein structure},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {406--411},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt462},
doi = {10.1093/NAR/GKT462},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BlaszczykJKK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BlinMKFBTW13,
author = {Kai Blin and
Marnix H. Medema and
Daniyal Kazempour and
Michael A. Fischbach and
Rainer Breitling and
Eriko Takano and
Tilmann Weber},
title = {antiSMASH 2.0 - a versatile platform for genome mining of secondary
metabolite producers},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {204--212},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt449},
doi = {10.1093/NAR/GKT449},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BlinMKFBTW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BoratynCCCFMMMMMRSTYZ13,
author = {Grzegorz M. Boratyn and
Christiam Camacho and
Peter S. Cooper and
George Coulouris and
Amelia Fong and
Ning Ma and
Thomas L. Madden and
Wayne T. Matten and
Scott D. McGinnis and
Yuri Merezhuk and
Yan Raytselis and
Eric W. Sayers and
Tao Tao and
Jian Ye and
Irena Zaretskaya},
title = {{BLAST:} a more efficient report with usability improvements},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {29--33},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt282},
doi = {10.1093/NAR/GKT282},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BoratynCCCFMMMMMRSTYZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BretaudeauCHGCSRCSP13,
author = {Anthony Bretaudeau and
Fran{\c{c}}ois Coste and
Florian Humily and
Laurence Garczarek and
Gildas Le Corguill{\'{e}} and
Christophe Six and
Morgane Ratin and
Olivier Collin and
Wendy M. Schluchter and
Fr{\'{e}}d{\'{e}}ric Partensky},
title = {CyanoLyase: a database of phycobilin lyase sequences, motifs and functions},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {396--401},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1091},
doi = {10.1093/NAR/GKS1091},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BretaudeauCHGCSRCSP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BreuerFLCSLWHBL13,
author = {Karin Breuer and
Amir K. Foroushani and
Matthew R. Laird and
Carol Chen and
Anastasia Sribnaia and
Raymond Lo and
Geoffrey L. Winsor and
Robert E. W. Hancock and
Fiona S. L. Brinkman and
David J. Lynn},
title = {InnateDB: systems biology of innate immunity and beyond - recent updates
and continuing curation},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {1228--1233},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1147},
doi = {10.1093/NAR/GKS1147},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BreuerFLCSLWHBL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BroosSHMRB13,
author = {Stefan Broos and
Arne Soete and
Bart Hooghe and
Raymond Moran and
Frans van Roy and
Pieter J. De Bleser},
title = {PhysBinder: improving the prediction of transcription factor binding
sites by flexible inclusion of biophysical properties},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {531--534},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt288},
doi = {10.1093/NAR/GKT288},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BroosSHMRB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BuchanMNBJ13,
author = {Daniel W. A. Buchan and
Federico Minneci and
Tim C. O. Nugent and
Kevin Bryson and
David T. Jones},
title = {Scalable web services for the {PSIPRED} Protein Analysis Workbench},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {349--357},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt381},
doi = {10.1093/NAR/GKT381},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BuchanMNBJ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BultEBKR13,
author = {Carol J. Bult and
Janan T. Eppig and
Judith A. Blake and
James A. Kadin and
Joel E. Richardson},
title = {The Mouse Genome Database: Genotypes, Phenotypes, and Models of Human
Disease},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {885--891},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1115},
doi = {10.1093/NAR/GKS1115},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BultEBKR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BurgeDETBNEGB13,
author = {Sarah W. Burge and
Jennifer Daub and
Ruth Y. Eberhardt and
John G. Tate and
Lars Barquist and
Eric P. Nawrocki and
Sean R. Eddy and
Paul P. Gardner and
Alex Bateman},
title = {Rfam 11.0: 10 years of {RNA} families},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {226--232},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1005},
doi = {10.1093/NAR/GKS1005},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BurgeDETBNEGB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BuschH13,
author = {Anke Busch and
Klemens J. Hertel},
title = {HEXEvent: a database of Human EXon splicing Events},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {118--124},
year = {2013},
url = {https://doi.org/10.1093/nar/gks969},
doi = {10.1093/NAR/GKS969},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BuschH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CerDMTLSHVYLBCS13,
author = {Regina Z. Cer and
Duncan E. Donohue and
Uma Mudunuri and
Nuri A. Temiz and
Michael A. Loss and
Nathan J. Starner and
Goran N. Halusa and
Natalia Volfovsky and
Ming Yi and
Brian T. Luke and
Albino Bacolla and
Jack R. Collins and
Robert M. Stephens},
title = {Non-B {DB} v2.0: a database of predicted non-B DNA-forming motifs
and its associated tools},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {94--100},
year = {2013},
url = {https://doi.org/10.1093/nar/gks955},
doi = {10.1093/NAR/GKS955},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CerDMTLSHVYLBCS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Chatr-aryamontriBHBWSNRKORBSCCRLODT13,
author = {Andrew Chatr{-}aryamontri and
Bobby{-}Joe Breitkreutz and
Sven Heinicke and
Lorrie Boucher and
Andrew G. Winter and
Chris Stark and
Julie Nixon and
Lindsay Ramage and
Nadine Kolas and
Lara O'Donnell and
Teresa Reguly and
Ashton Breitkreutz and
Adnane Sellam and
Daici Chen and
Christie S. Chang and
Jennifer M. Rust and
Michael S. Livstone and
Rose Oughtred and
Kara Dolinski and
Mike Tyers},
title = {The BioGRID interaction database: 2013 update},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {816--823},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1158},
doi = {10.1093/NAR/GKS1158},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Chatr-aryamontriBHBWSNRKORBSCCRLODT13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ChenP13,
author = {Shu{-}wen W. Chen and
Jean{-}Luc Pellequer},
title = {Adepth: new representation and its implications for atomic depths
of macromolecules},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {412--416},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt299},
doi = {10.1093/NAR/GKT299},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ChenP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ChenWWQLCZYC13,
author = {Geng Chen and
Ziyun Wang and
Dongqing Wang and
Chengxiang Qiu and
Mingxi Liu and
Xing Chen and
Qipeng Zhang and
Guiying Yan and
Qinghua Cui},
title = {LncRNADisease: a database for long-non-coding RNA-associated diseases},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {983--986},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1099},
doi = {10.1093/NAR/GKS1099},
timestamp = {Thu, 11 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/ChenWWQLCZYC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ChengCHCSTLWW13,
author = {Wei{-}Chung Cheng and
I{-}Fang Chung and
Tse{-}Shun Huang and
Shih{-}Ting Chang and
Hsing{-}Jen Sun and
Cheng{-}Fong Tsai and
Muh{-}Lii Liang and
Tai{-}Tong Wong and
Hsei{-}Wei Wang},
title = {{YM500:} a small {RNA} sequencing (smRNA-seq) database for microRNA
research},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {285--294},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1238},
doi = {10.1093/NAR/GKS1238},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ChengCHCSTLWW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ChiuLHHTYY13,
author = {Yi{-}Yuan Chiu and
Chih{-}Ta Lin and
Jhang{-}Wei Huang and
Kai{-}Cheng Hsu and
Jen{-}Hu Tseng and
Syuan{-}Ren You and
Jinn{-}Moon Yang},
title = {KIDFamMap: a database of kinase-inhibitor-disease family maps for
kinase inhibitor selectivity and binding mechanisms},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {430--440},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1218},
doi = {10.1093/NAR/GKS1218},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ChiuLHHTYY13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ChivianDKA13,
author = {Dylan Chivian and
Paramvir S. Dehal and
Keith Keller and
Adam P. Arkin},
title = {metaMicrobesOnline: phylogenomic analysis of microbial communities},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {648--654},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1202},
doi = {10.1093/NAR/GKS1202},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ChivianDKA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ChoJJYKKCCRLKKL13,
author = {Sooyoung Cho and
Insu Jang and
Yukyung Jun and
Suhyeon Yoon and
Minjeong Ko and
Yeajee Kwon and
Ikjung Choi and
Hyeshik Chang and
Daeun Ryu and
Byungwook Lee and
V. Narry Kim and
Wan Kyu Kim and
Sanghyuk Lee},
title = {miRGator v3.0: a microRNA portal for deep sequencing, expression profiling
and mRNA targeting},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {252--257},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1168},
doi = {10.1093/NAR/GKS1168},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ChoJJYKKCCRLKKL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ChoiCJJLKKLL13,
author = {Jaeyoung Choi and
Kyeong{-}Chae Cheong and
Kyongyong Jung and
Jongbum Jeon and
Gir{-}Won Lee and
Seogchan Kang and
Sangsoo Kim and
Yin{-}Won Lee and
Yong{-}Hwan Lee},
title = {{CFGP} 2.0: a versatile web-based platform for supporting comparative
and evolutionary genomics of fungi and Oomycetes},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {714--719},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1163},
doi = {10.1093/NAR/GKS1163},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/ChoiCJJLKKLL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ChursovKBFS13,
author = {Andrey Chursov and
Sebastian J. Kopetzky and
Gennady Bocharov and
Dmitrij Frishman and
Alexander Shneider},
title = {RNAtips: analysis of temperature-induced changes of {RNA} secondary
structure},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {486--491},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt486},
doi = {10.1093/NAR/GKT486},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ChursovKBFS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CochraneAABCCGGJKLLLMOPPPPRRRSSSHTVZ13,
author = {Guy Cochrane and
Blaise T. F. Alako and
Clara Amid and
Lawrence Bower and
Ana Cerde{\~{n}}o{-}T{\'{a}}rraga and
Iain Cleland and
Richard Gibson and
Neil Goodgame and
Mikyung Jang and
Simon Kay and
Rasko Leinonen and
Xiu Lin and
Rodrigo Lopez and
Hamish McWilliam and
Arnaud Oisel and
Nima Pakseresht and
Swapna Pallreddy and
Young Mi Park and
Sheila Plaister and
Rajesh Radhakrishnan and
St{\'{e}}phane Rivi{\`{e}}re and
Marc Rossello and
Alexander Senf and
Nicole Silvester and
Dimitriy Smirnov and
Petra ten Hoopen and
Ana Luisa Toribio and
Daniel Vaughan and
Vadim Zalunin},
title = {Facing growth in the European Nucleotide Archive},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {30--35},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1175},
doi = {10.1093/NAR/GKS1175},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/CochraneAABCCGGJKLLLMOPPPPRRRSSSHTVZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CognatPDDGSMGGGM13,
author = {Val{\'{e}}rie Cognat and
Ga{\"{e}}l Pawlak and
Anne{-}Marie Duch{\^{e}}ne and
Magali Daujat and
Ana{\"{\i}}s Gigant and
Thalia Salinas and
Morgane Michaud and
Bernard Gutmann and
Philippe Gieg{\'{e}} and
Anthony Gobert and
Laurence Marechal{-}Drouard},
title = {PlantRNA, a database for tRNAs of photosynthetic eukaryotes},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {273--279},
year = {2013},
url = {https://doi.org/10.1093/nar/gks935},
doi = {10.1093/NAR/GKS935},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CognatPDDGSMGGGM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CohenAKBP13,
author = {Ofir Cohen and
Haim Ashkenazy and
Eli Levy Karin and
David Burstein and
Tal Pupko},
title = {CoPAP: Coevolution of Presence-Absence Patterns},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {232--237},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt471},
doi = {10.1093/NAR/GKT471},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CohenAKBP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ColaertMIDPHHVGM13,
author = {Niklaas Colaert and
Davy Maddelein and
Francis Impens and
Petra Van Damme and
Kim Plasman and
Kenny Helsens and
Niels Hulstaert and
Jo{\"{e}}l Vandekerckhove and
Kris Gevaert and
Lennart Martens},
title = {The Online Protein Processing Resource {(TOPPR):} a database and analysis
platform for protein processing events},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {333--337},
year = {2013},
url = {https://doi.org/10.1093/nar/gks998},
doi = {10.1093/NAR/GKS998},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ColaertMIDPHHVGM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ConwayB13,
author = {Kyle R. Conway and
Christopher N. Boddy},
title = {ClusterMine360: a database of microbial {PKS/NRPS} biosynthesis},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {402--407},
year = {2013},
url = {https://doi.org/10.1093/nar/gks993},
doi = {10.1093/NAR/GKS993},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ConwayB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CoronnelloB13,
author = {Claudia Coronnello and
Panayiotis V. Benos},
title = {ComiR: combinatorial microRNA target prediction tool},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {159--164},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt379},
doi = {10.1093/NAR/GKT379},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CoronnelloB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CoxNSYMMT13,
author = {Robert Sidney Cox III and
Koro Nishikata and
Sayoko Shimoyama and
Yuko Yoshida and
Minami Matsui and
Yuko Makita and
Tetsuro Toyoda},
title = {PromoterCAD: data-driven design of plant regulatory {DNA}},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {569--574},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt518},
doi = {10.1093/NAR/GKT518},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CoxNSYMMT13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CvitkovicJ13,
author = {Ivan Cvitkovic and
Melissa S. Jurica},
title = {Spliceosome Database: a tool for tracking components of the spliceosome},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {132--141},
year = {2013},
url = {https://doi.org/10.1093/nar/gks999},
doi = {10.1093/NAR/GKS999},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CvitkovicJ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DAndreaGMT13,
author = {Daniel D'Andrea and
Luigi Grassi and
Mariagiovanna Mazzapioda and
Anna Tramontano},
title = {{FIDEA:} a server for the functional interpretation of differential
expression analysis},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {84--88},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt516},
doi = {10.1093/NAR/GKT516},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/DAndreaGMT13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DanksCPBDFPMLWCTM13,
author = {Gemma B. Danks and
Coen Campsteijn and
Mrutyunjaya Parida and
Stephen Butcher and
Harsha Doddapaneni and
Bolei Fu and
Raul Petrin and
Raghu Metpally and
Boris Lenhard and
Patrick Wincker and
Daniel Chourrout and
Eric M. Thompson and
J. Robert Manak},
title = {OikoBase: a genomics and developmental transcriptomics resource for
the urochordate \emph{Oikopleura dioica}},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {845--853},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1159},
doi = {10.1093/NAR/GKS1159},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/DanksCPBDFPMLWCTM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DavisMJLLSSKRWM13,
author = {Allan Peter Davis and
Cynthia G. Murphy and
Robin J. Johnson and
Jean M. Lay and
Kelley Lennon{-}Hopkins and
Cynthia A. Saraceni{-}Richards and
Daniela Sciaky and
Benjamin L. King and
Michael C. Rosenstein and
Thomas C. Wiegers and
Carolyn J. Mattingly},
title = {The Comparative Toxicogenomics Database: update 2013},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {1104--1114},
year = {2013},
url = {https://doi.org/10.1093/nar/gks994},
doi = {10.1093/NAR/GKS994},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/DavisMJLLSSKRWM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DehouckKRG13,
author = {Yves Dehouck and
Jean Marc Kwasigroch and
Marianne Rooman and
Dimitri Gilis},
title = {BeAtMuSiC: prediction of changes in protein-protein binding affinity
on mutations},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {333--339},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt450},
doi = {10.1093/NAR/GKT450},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/DehouckKRG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DevaursBVZAISC13,
author = {Didier Devaurs and
L{\'{e}}a Bouard and
Marc Vaisset and
Christophe Zanon and
Ibrahim Al{-}Bluwi and
Romain Iehl and
Thierry Sim{\'{e}}on and
Juan Cort{\'{e}}s},
title = {MoMA-LigPath: a web server to simulate protein-ligand unbinding},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {297--302},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt380},
doi = {10.1093/NAR/GKT380},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/DevaursBVZAISC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DhillonCLLB13,
author = {Bhavjinder K. Dhillon and
Terry A. Chiu and
Matthew R. Laird and
Morgan G. I. Langille and
Fiona S. L. Brinkman},
title = {IslandViewer update: improved genomic island discovery and visualization},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {129--132},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt394},
doi = {10.1093/NAR/GKT394},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/DhillonCLLB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DimitrievaB13,
author = {Slavica Dimitrieva and
Philipp Bucher},
title = {UCNEbase - a database of ultraconserved non-coding elements and genomic
regulatory blocks},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {101--109},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1092},
doi = {10.1093/NAR/GKS1092},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/DimitrievaB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DoorslaerTXBGMHM13,
author = {Koenraad Van Doorslaer and
Qina Tan and
Sandhya Xirasagar and
Sandya Bandaru and
Vivek Gopalan and
Yasmin Mohamoud and
Yentram Huyen and
Alison A. McBride},
title = {The Papillomavirus Episteme: a central resource for papillomavirus
sequence data and analysis},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {571--578},
year = {2013},
url = {https://doi.org/10.1093/nar/gks984},
doi = {10.1093/NAR/GKS984},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/DoorslaerTXBGMHM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DreosAPB13,
author = {Ren{\'{e}} Dreos and
Giovanna Ambrosini and
Roua{\"{\i}}da Cavin P{\'{e}}rier and
Philipp Bucher},
title = {{EPD} and EPDnew, high-quality promoter resources in the next-generation
sequencing era},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {157--164},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1233},
doi = {10.1093/NAR/GKS1233},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/DreosAPB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/EbejerHKSD13,
author = {Jean{-}Paul Ebejer and
Jamie R. Hill and
Sebastian Kelm and
Jiye Shi and
Charlotte M. Deane},
title = {Memoir: template-based structure prediction for membrane proteins},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {379--383},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt331},
doi = {10.1093/NAR/GKT331},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/EbejerHKSD13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/EggenhoferHS13,
author = {Florian Eggenhofer and
Ivo L. Hofacker and
Christian H{\"{o}}ner zu Siederdissen},
title = {CMCompare webserver: comparing {RNA} families via covariance models},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {499--503},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt329},
doi = {10.1093/NAR/GKT329},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/EggenhoferHS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/EichbornDGPHBASANCGNSP13,
author = {Joachim von Eichborn and
Mathias Dunkel and
Bj{\"{o}}rn O. Gohlke and
Sarah C. Preissner and
Michael F. Hoffmann and
Jakob M. J. Bauer and
J. Douglas Armstrong and
Martin H. Schaefer and
Miguel A. Andrade{-}Navarro and
Nicolas Le Nov{\`{e}}re and
Michael D. R. Croning and
Seth G. N. Grant and
Pim van Nierop and
August B. Smit and
Robert Preissner},
title = {SynSysNet: integration of experimental data on synaptic protein-protein
interactions with drug-target relations},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {834--840},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1040},
doi = {10.1093/NAR/GKS1040},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/EichbornDGPHBASANCGNSP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/EijssenJAGGME13,
author = {Lars M. T. Eijssen and
Magali Jaillard and
Michiel E. Adriaens and
Stan Gaj and
Philip J. de Groot and
Michael R. M{\"{u}}ller and
Chris T. A. Evelo},
title = {User-friendly solutions for microarray quality control and pre-processing
on ArrayAnalysis.org},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {71--76},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt293},
doi = {10.1093/NAR/GKT293},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/EijssenJAGGME13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/EsqueLBO13,
author = {Jeremy Esque and
Sylvain L{\'{e}}onard and
Alexandre G. de Brevern and
Christophe Oguey},
title = {{VLDP} web server: a powerful geometric tool for analysing protein
structures in their environment},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {373--378},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt509},
doi = {10.1093/NAR/GKT509},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/EsqueLBO13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FangG13,
author = {Hai Fang and
Julian Gough},
title = {dcGO: database of domain-centric ontologies on functions, phenotypes,
diseases and more},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {536--544},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1080},
doi = {10.1093/NAR/GKS1080},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FangG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FawalLSBPFMD13,
author = {Nizar Fawal and
Qiang Li and
Bruno Savelli and
Marie Brette and
Gisele Passaia and
Maxime Fabre and
Catherine Math{\'{e}} and
Christophe Dunand},
title = {PeroxiBase: a database for large-scale evolutionary analysis of peroxidases},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {441--444},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1083},
doi = {10.1093/NAR/GKS1083},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FawalLSBPFMD13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FelderRPPSG13,
author = {Marius Felder and
Alessandro Romualdi and
Andreas Petzold and
Matthias Platzer and
J{\"{u}}rgen S{\"{u}}hnel and
Gernot Gl{\"{o}}ckner},
title = {GenColors-based comparative genome databases for small eukaryotic
genomes},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {692--699},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1176},
doi = {10.1093/NAR/GKS1176},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FelderRPPSG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Fernandez-SuarezG13,
author = {Xos{\'{e}} M. Fern{\'{a}}ndez{-}Su{\'{a}}rez and
Michael Y. Galperin},
title = {The 2013 \emph{Nucleic Acids Research} Database Issue and the online
Molecular Biology Database Collection},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {1--7},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1297},
doi = {10.1093/NAR/GKS1297},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Fernandez-SuarezG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FingermanZRHCS13,
author = {Ian M. Fingerman and
Xuan Zhang and
Walter Ratzat and
Nora Husain and
Robert F. Cohen and
Gregory D. Schuler},
title = {{NCBI} Epigenomics: What's new for 2013},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {221--225},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1171},
doi = {10.1093/NAR/GKS1171},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FingermanZRHCS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Fletez-BrantLMB13,
author = {Christopher Fletez{-}Brant and
Dongwon Lee and
Andrew S. McCallion and
Michael A. Beer},
title = {kmer-SVM: a web server for identifying predictive regulatory sequence
features in genomic data sets},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {544--556},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt519},
doi = {10.1093/NAR/GKT519},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/Fletez-BrantLMB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FlicekAA13,
author = {Paul Flicek and
Ikhlak Ahmed and
M. Ridwan Amode and
Daniel Barrell and
Kathryn Beal and
Simon Brent and
Denise Carvalho{-}Silva and
Peter Clapham and
Guy Coates and
Susan Fairley and
Stephen Fitzgerald and
Laurent Gil and
Carlos Garc{\'{\i}}a{-}Gir{\'{o}}n and
Leo Gordon and
Thibaut Hourlier and
Sarah E. Hunt and
Thomas Juettemann and
Andreas K{\"{a}}h{\"{a}}ri and
Stephen Keenan and
Monika Komorowska and
Eugene Kulesha and
Ian Longden and
Thomas Maurel and
William M. McLaren and
Matthieu Muffato and
Rishi Nag and
Bert Overduin and
Miguel Pignatelli and
Bethan Pritchard and
Emily Pritchard and
Harpreet Singh Riat and
Graham R. S. Ritchie and
Magali Ruffier and
Michael Schuster and
Daniel Sheppard and
Daniel Sobral and
Kieron R. Taylor and
Anja Thormann and
Stephen J. Trevanion and
Simon White and
Steven P. Wilder and
Bronwen L. Aken and
Ewan Birney and
Fiona Cunningham and
Ian Dunham and
Jennifer L. Harrow and
Javier Herrero and
Tim J. P. Hubbard and
Nathan Johnson and
Rhoda Kinsella and
Anne Parker and
Giulietta Spudich and
Andy Yates and
Amonida Zadissa and
Stephen M. J. Searle},
title = {Ensembl 2013},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {48--55},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1236},
doi = {10.1093/NAR/GKS1236},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FlicekAA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FortneyXKGKJ13,
author = {Kristen Fortney and
Wing Xie and
Max Kotlyar and
Joshua Griesman and
Yulia Kotseruba and
Igor Jurisica},
title = {NetwoRx: connecting drugs to networks and phenotypes in \emph{Saccharomyces
cerevisiae}},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {720--727},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1106},
doi = {10.1093/NAR/GKS1106},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FortneyXKGKJ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FranceschiniSFKSRLMBMJ13,
author = {Andrea Franceschini and
Damian Szklarczyk and
Sune Frankild and
Michael Kuhn and
Milan Simonovic and
Alexander Roth and
Jianyi Lin and
Pablo Minguez and
Peer Bork and
Christian von Mering and
Lars Juhl Jensen},
title = {{STRING} v9.1: protein-protein interaction networks, with increased
coverage and integration},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {808--815},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1094},
doi = {10.1093/NAR/GKS1094},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FranceschiniSFKSRLMBMJ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Frenkel-MorgensternGLRIBLBV13,
author = {Milana Frenkel{-}Morgenstern and
Alessandro Gorohovski and
Vincent Lacroix and
Mark F. Rogers and
Kristina Ib{\'{a}}{\~{n}}ez and
Cesar Boullosa and
Eduardo Andr{\'{e}}s Le{\'{o}}n and
Asa Ben{-}Hur and
Alfonso Valencia},
title = {ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts
and RNA-sequencing data},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {142--151},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1041},
doi = {10.1093/NAR/GKS1041},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Frenkel-MorgensternGLRIBLBV13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FuHHJ13,
author = {Szu{-}Chin Fu and
Hsuan{-}Cheng Huang and
Paul Horton and
Hsueh{-}Fen Juan},
title = {ValidNESs: a database of validated leucine-rich nuclear export signals},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {338--343},
year = {2013},
url = {https://doi.org/10.1093/nar/gks936},
doi = {10.1093/NAR/GKS936},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FuHHJ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FuV13,
author = {Fengli Fu and
Daniel F. Voytas},
title = {Zinc Finger Database (ZiFDB) v2.0: a comprehensive database of C\({}_{\mbox{2}}\)H\({}_{\mbox{2}}\)
zinc fingers and engineered zinc finger arrays},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {452--455},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1167},
doi = {10.1093/NAR/GKS1167},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FuV13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GaoLWCYGRX13,
author = {Tianshun Gao and
Zexian Liu and
Yongbo Wang and
Han Cheng and
Qing Yang and
Anyuan Guo and
Jian Ren and
Yu Xue},
title = {{UUCD:} a family-based database of ubiquitin and ubiquitin-like conjugation},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {445--451},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1103},
doi = {10.1093/NAR/GKS1103},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GaoLWCYGRX13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GaoLZ13,
author = {Feng Gao and
Hao Luo and
Chun{-}Ting Zhang},
title = {DoriC 5.0: an updated database of \emph{oriC} regions in both bacterial
and archaeal genomes},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {90--93},
year = {2013},
url = {https://doi.org/10.1093/nar/gks990},
doi = {10.1093/NAR/GKS990},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GaoLZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Garcia-MartinCD13,
author = {Juan Antonio Garc{\'{\i}}a{-}Mart{\'{\i}}n and
Peter Clote and
Iv{\'{a}}n Dot{\'{u}}},
title = {RNAiFold: a web server for {RNA} inverse folding and molecular design},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {465--470},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt280},
doi = {10.1093/NAR/GKT280},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Garcia-MartinCD13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GeffersTCYE13,
author = {Lars Geffers and
Benjamin Tetzlaff and
Xiao Cui and
Jun Yan and
Gregor Eichele},
title = {METscout: a pathfinder exploring the landscape of metabolites, enzymes
and transporters},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {1047--1054},
year = {2013},
url = {https://doi.org/10.1093/nar/gks886},
doi = {10.1093/NAR/GKS886},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GeffersTCYE13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GfellerMZ13,
author = {David Gfeller and
Olivier Michielin and
Vincent Zoete},
title = {SwissSidechain: a molecular and structural database of non-natural
sidechains},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {327--332},
year = {2013},
url = {https://doi.org/10.1093/nar/gks991},
doi = {10.1093/NAR/GKS991},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GfellerMZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GiuliettiPDMPCDPZPPP13,
author = {Matteo Giulietti and
Francesco Piva and
Mattia D'Antonio and
Paolo D'Onorio De Meo and
Daniele Paoletti and
Tiziana Castrignan{\`{o}} and
Anna Maria D'Erchia and
Ernesto Picardi and
Federico Zambelli and
Giovanni Principato and
Giulio Pavesi and
Graziano Pesole},
title = {SpliceAid-F: a database of human splicing factors and their RNA-binding
sites},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {125--131},
year = {2013},
url = {https://doi.org/10.1093/nar/gks997},
doi = {10.1093/NAR/GKS997},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GiuliettiPDMPCDPZPPP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GoldmanBDL13,
author = {Aaron David Goldman and
Tess M. Bernhard and
Egor Dolzhenko and
Laura F. Landweber},
title = {LUCApedia: a database for the study of ancient life},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {1079--1082},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1217},
doi = {10.1093/NAR/GKS1217},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GoldmanBDL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GoldmanCSECDMWSHZ13,
author = {Mary Goldman and
Brian Craft and
Teresa Swatloski and
Kyle Ellrott and
Melissa S. Cline and
Mark Diekhans and
Singer Ma and
Chris Wilks and
Joshua M. Stuart and
David Haussler and
Jingchun Zhu},
title = {The {UCSC} Cancer Genomics Browser: update 2013},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {949--954},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1008},
doi = {10.1093/NAR/GKS1008},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GoldmanCSECDMWSHZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GoncearencoMYEEB13,
author = {Alexander Goncearenco and
Simon Mitternacht and
Taipang Yong and
Birgit Eisenhaber and
Frank Eisenhaber and
Igor N. Berezovsky},
title = {{SPACER:} server for predicting allosteric communication and effects
of regulation},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {266--272},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt460},
doi = {10.1093/NAR/GKT460},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GoncearencoMYEEB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GrayDGSWB13,
author = {Kristian A. Gray and
Louise C. Daugherty and
Susan M. Gordon and
Ruth L. Seal and
Mathew W. Wright and
Elspeth A. Bruford},
title = {Genenames.org: the {HGNC} resources in 2013},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {545--552},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1066},
doi = {10.1093/NAR/GKS1066},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GrayDGSWB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GuillouBABBBBBVDCDDEHKLBLMMMMNPPSSSVZC13,
author = {Laure Guillou and
Dipankar Bachar and
St{\'{e}}phane Audic and
David Bass and
C{\'{e}}dric Berney and
Lucie Bittner and
Christophe Boutte and
Ga{\'{e}}tan Burgaud and
Colomban de Vargas and
Johan Decelle and
Javier del Campo and
John R. Dolan and
Micah Dunthorn and
Bente Edvardsen and
Maria Holzmann and
Wiebe H. C. F. Kooistra and
Enrique Lara and
Noan Le Bescot and
Ramiro Logares and
Fr{\'{e}}d{\'{e}}ric Mah{\'{e}} and
Ramon Massana and
Marina Montresor and
Raphael Morard and
Fabrice Not and
Jan Pawlowski and
Ian Probert and
Anne{-}Laure Sauvadet and
Raffaele Siano and
Thorsten Stoeck and
Daniel Vaulot and
Pascal Zimmermann and
Richard Christen},
title = {The Protist Ribosomal Reference database (PR\({}^{\mbox{2}}\)): a
catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with
curated taxonomy},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {597--604},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1160},
doi = {10.1093/NAR/GKS1160},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GuillouBABBBBBVDCDDEHKLBLMMMMNPPSSSVZC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GuoJWLKDLMKW13,
author = {Anchi Guo and
Timothy Jewison and
Michael Wilson and
Yifeng Liu and
Craig Knox and
Yannick Djoumbou and
Patrick Lo and
Rupasri Mandal and
Ram Krishnamurthy and
David S. Wishart},
title = {{ECMDB:} The \emph{E. coli} Metabolome Database},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {625--630},
year = {2013},
url = {https://doi.org/10.1093/nar/gks992},
doi = {10.1093/NAR/GKS992},
timestamp = {Fri, 25 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/GuoJWLKDLMKW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HaftSRHBB13,
author = {Daniel H. Haft and
Jeremy D. Selengut and
Roland A. Richter and
Derek M. Harkins and
Malay Kumar Basu and
Erin Beck},
title = {TIGRFAMs and Genome Properties in 2013},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {387--395},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1234},
doi = {10.1093/NAR/GKS1234},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HaftSRHBB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HamelinSJR13,
author = {Chantal Hamelin and
Guilhem Semp{\'{e}}r{\'{e}} and
Vincent Jouffe and
Manuel Ruiz},
title = {TropGeneDB, the multi-tropical crop information system updated and
extended},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {1172--1175},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1105},
doi = {10.1093/NAR/GKS1105},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HamelinSJR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HastingsMDEHKMOTWS13,
author = {Janna Hastings and
Paula de Matos and
Adriano Dekker and
Marcus Ennis and
Bhavana Harsha and
Namrata Kale and
Venkatesh Muthukrishnan and
Gareth I. Owen and
Steve Turner and
Mark Williams and
Christoph Steinbeck},
title = {The ChEBI reference database and ontology for biologically relevant
chemistry: enhancements for 2013},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {456--463},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1146},
doi = {10.1093/NAR/GKS1146},
timestamp = {Fri, 24 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/HastingsMDEHKMOTWS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HatjeHK13,
author = {Klas Hatje and
Bj{\"{o}}rn Hammesfahr and
Martin Kollmar},
title = {WebScipio: reconstructing alternative splice variants of eukaryotic
proteins},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {504--509},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt398},
doi = {10.1093/NAR/GKT398},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HatjeHK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HaugSCHMRMWNRMBSGS13,
author = {Kenneth Haug and
Reza M. Salek and
Pablo Conesa and
Janna Hastings and
Paula de Matos and
Mark Rijnbeek and
Tejasvi Mahendraker and
Mark Williams and
Steffen Neumann and
Philippe Rocca{-}Serra and
Eamonn Maguire and
Alejandra N. Gonz{\'{a}}lez{-}Beltr{\'{a}}n and
Susanna{-}Assunta Sansone and
Julian L. Griffin and
Christoph Steinbeck},
title = {MetaboLights - an open-access general-purpose repository for metabolomics
studies and associated meta-data},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {781--786},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1004},
doi = {10.1093/NAR/GKS1004},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HaugSCHMRMWNRMBSGS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HayerJDKZC13,
author = {Juliette Hayer and
Fanny Jadeau and
Gilbert Del{\'{e}}age and
Alan Kay and
Fabien Zoulim and
Christophe Combet},
title = {HBVdb: a knowledge database for Hepatitis {B} Virus},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {566--570},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1022},
doi = {10.1093/NAR/GKS1022},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HayerJDKZC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HeelJMKK13,
author = {Auke J. van Heel and
Anne de Jong and
Manuel Montalb{\'{a}}n{-}L{\'{o}}pez and
Jan Kok and
Oscar P. Kuipers},
title = {{BAGEL3:} automated identification of genes encoding bacteriocins
and (non-)bactericidal posttranslationally modified peptides},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {448--453},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt391},
doi = {10.1093/NAR/GKT391},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HeelJMKK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HeinkeSSL13,
author = {Florian Heinke and
Stefan Schildbach and
Daniel Stockmann and
Dirk Labudde},
title = {eProS - a database and toolbox for investigating protein sequence-structure-function
relationships through energy profiles},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {320--326},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1079},
doi = {10.1093/NAR/GKS1079},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HeinkeSSL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HeoPS13,
author = {Lim Heo and
Hahnbeom Park and
Chaok Seok},
title = {GalaxyRefine: protein structure refinement driven by side-chain repacking},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {384--388},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt458},
doi = {10.1093/NAR/GKT458},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HeoPS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Hoeppner13,
author = {Marilu A. Hoeppner},
title = {{NCBI} Bookshelf: books and documents in life sciences and health
care},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {1251--1260},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1279},
doi = {10.1093/NAR/GKS1279},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Hoeppner13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HoffS13,
author = {Katharina Jasmin Hoff and
Mario Stanke},
title = {WebAUGUSTUS - a web service for training {AUGUSTUS} and predicting
genes in eukaryotes},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {123--128},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt418},
doi = {10.1093/NAR/GKT418},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HoffS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HospitalFCGGO13,
author = {Adam Hospital and
Ignacio Faustino and
Rosana Collepardo{-}Guevara and
Carlos Gonz{\'{a}}lez and
Josep Lluis Gelp{\'{\i}} and
Modesto Orozco},
title = {NAFlex: a web server for the study of nucleic acid flexibility},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {47--55},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt378},
doi = {10.1093/NAR/GKT378},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HospitalFCGGO13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HoweBCEFFKMMMP0RRRSSSSSW13,
author = {Douglas G. Howe and
Yvonne M. Bradford and
Tom Conlin and
Anne E. Eagle and
David Fashena and
Ken Frazer and
Jonathan Knight and
Prita Mani and
Ryan Martin and
Sierra A. T. Moxon and
Holly Paddock and
Christian Pich and
Sridhar Ramachandran and
Barbara J. Ruef and
Leyla Ruzicka and
Kevin Schaper and
Xiang Shao and
Amy Singer and
Brock Sprunger and
Ceri E. Van Slyke and
Monte Westerfield},
title = {ZFIN, the Zebrafish Model Organism Database: increased support for
mutants and transgenics},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {854--860},
year = {2013},
url = {https://doi.org/10.1093/nar/gks938},
doi = {10.1093/NAR/GKS938},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HoweBCEFFKMMMP0RRRSSSSSW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HuCWHLTGD13,
author = {Zhenjun Hu and
Yi{-}Chien Chang and
Yan Wang and
Chia{-}Ling Huang and
Yang Liu and
Feng Tian and
Brian Granger and
Charles DeLisi},
title = {VisANT 4.0: Integrative network platform to connect genes, drugs,
diseases and therapies},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {225--231},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt401},
doi = {10.1093/NAR/GKT401},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HuCWHLTGD13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HuPWR13,
author = {Zhi{-}Liang Hu and
Carissa A. Park and
Xiaolin Wu and
James M. Reecy},
title = {Animal QTLdb: an improved database tool for livestock animal QTL/association
data dissemination in the post-genome era},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {871--879},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1150},
doi = {10.1093/NAR/GKS1150},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HuPWR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HuretAABCDGJLLMMMPTVWZD13,
author = {Jean{-}Loup Huret and
Mohammad Ahmad and
M{\'{e}}lanie Arsaban and
Alain Bernheim and
J{\'{e}}r{\'{e}}my Cigna and
Fran{\c{c}}ois Desangles and
Jean{-}Christophe Guignard and
Marie{-}Christine Jacquemot{-}Perbal and
Maureen Labarussias and
Vanessa Leberre and
Anne Malo and
Catherine Morel{-}Pair and
Hossein Mossafa and
Jean{-}Claude Potier and
Guillaume Texier and
Franck Vigui{\'{e}} and
Sylvie Yau Chun Wan{-}Senon and
Alain Zasadzinski and
Philippe Dessen},
title = {Atlas of Genetics and Cytogenetics in Oncology and Haematology in
2013},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {920--924},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1082},
doi = {10.1093/NAR/GKS1082},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HuretAABCDGJLLMMMPTVWZD13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/IchikawaSYKYYF13,
author = {Natsuko Ichikawa and
Machi Sasagawa and
Mika Yamamoto and
Hisayuki Komaki and
Yumi Yoshida and
Shuji Yamazaki and
Nobuyuki Fujita},
title = {DoBISCUIT: a database of secondary metabolite biosynthetic gene clusters},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {408--414},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1177},
doi = {10.1093/NAR/GKS1177},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/IchikawaSYKYYF13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/IsmerRTGRH13,
author = {Jochen Ismer and
Alexander S. Rose and
Johanna K. S. Tiemann and
Andrean Goede and
Kristian Rother and
Peter Werner Hildebrand},
title = {Voronoia4RNA - a database of atomic packing densities of {RNA} structures
and their complexes},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {280--284},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1061},
doi = {10.1093/NAR/GKS1061},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/IsmerRTGRH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/IvankovBHDHKFL13,
author = {Dmitry N. Ivankov and
Natalya S. Bogatyreva and
Peter H{\"{o}}nigschmid and
Bastian Dislich and
Sebastian Hogl and
Peer{-}Hendrik Kuhn and
Dmitrij Frishman and
Stefan F. Lichtenthaler},
title = {{QARIP:} a web server for quantitative proteomic analysis of regulated
intramembrane proteolysis},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {459--464},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt436},
doi = {10.1093/NAR/GKT436},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/IvankovBHDHKFL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/James-ZornPJBSLSBKFBZV13,
author = {Christina James{-}Zorn and
Virgilio G. Ponferrada and
Chris Jarabek and
Kevin A. Burns and
Erik Segerdell and
Jacqueline Lee and
Kevin A. Snyder and
Bishnu Bhattacharyya and
J. Brad Karpinka and
Joshua D. Fortriede and
Jeff B. Bowes and
Aaron M. Zorn and
Peter D. Vize},
title = {Xenbase: expansion and updates of the \emph{Xenopus} model organism
database},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {865--870},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1025},
doi = {10.1093/NAR/GKS1025},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/James-ZornPJBSLSBKFBZV13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/JamrozKK13,
author = {Michal Jamr{\'{o}}z and
Andrzej Kolinski and
Sebastian Kmiecik},
title = {CABS-flex: server for fast simulation of protein structure fluctuations},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {427--431},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt332},
doi = {10.1093/NAR/GKT332},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/JamrozKK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/JessenHLN13,
author = {Leon Eyrich Jessen and
Ilka Hoof and
Ole Lund and
Morten Nielsen},
title = {\emph{SigniSite}: Identification of residue-level genotype-phenotype
correlations in protein multiple sequence alignments},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {286--291},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt497},
doi = {10.1093/NAR/GKT497},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/JessenHLN13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/JoI13,
author = {Sunhwan Jo and
Wonpil Im},
title = {Glycan fragment database: a database of PDB-based glycan 3D structures},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {470--474},
year = {2013},
url = {https://doi.org/10.1093/nar/gks987},
doi = {10.1093/NAR/GKS987},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/JoI13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KamburovSLH13,
author = {Atanas Kamburov and
Ulrich Stelzl and
Hans Lehrach and
Ralf Herwig},
title = {The ConsensusPathDB interaction database: 2013 update},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {793--800},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1055},
doi = {10.1093/NAR/GKS1055},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KamburovSLH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KaminumaFTSKSN13,
author = {Eli Kaminuma and
Takatomo Fujisawa and
Yasuhiro Tanizawa and
Naoko Sakamoto and
Nori Kurata and
Tokurou Shimizu and
Yasukazu Nakamura},
title = {{H2DB:} a heritability database across multiple species by annotating
trait-associated genomic loci},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {880--884},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1216},
doi = {10.1093/NAR/GKS1216},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KaminumaFTSKSN13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KarrSMAC13,
author = {Jonathan R. Karr and
Jayodita C. Sanghvi and
Derek N. Macklin and
Abhishek Arora and
Markus W. Covert},
title = {WholeCellKB: model organism databases for comprehensive whole-cell
models},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {787--792},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1108},
doi = {10.1093/NAR/GKS1108},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KarrSMAC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KayaAEH13,
author = {Cihan Kaya and
Andac Armutlulu and
Solen Ekesan and
Turkan Haliloglu},
title = {MCPath: Monte Carlo path generation approach to predict likely allosteric
pathways and functional residues},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {249--255},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt284},
doi = {10.1093/NAR/GKT284},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KayaAEH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KazanM13,
author = {Hilal Kazan and
Quaid Morris},
title = {RBPmotif: a web server for the discovery of sequence and structure
preferences of RNA-binding proteins},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {180--186},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt463},
doi = {10.1093/NAR/GKT463},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KazanM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KeselerMPSGBFHKKLMOPSSSTWWCGPK13,
author = {Ingrid M. Keseler and
Amanda Mackie and
Mart{\'{\i}}n Peralta{-}Gil and
Alberto Santos{-}Zavaleta and
Socorro Gama{-}Castro and
C{\'{e}}sar Bonavides{-}Mart{\'{\i}}nez and
Carol A. Fulcher and
Araceli M. Huerta and
Anamika Kothari and
Markus Krummenacker and
Mario Latendresse and
Luis Mu{\~{n}}iz{-}Rascado and
Quang Ong and
Suzanne M. Paley and
Imke Schr{\"{o}}der and
Alexander Glennon Shearer and
Pallavi Subhraveti and
Michael Travers and
Deepika Weerasinghe and
Verena Weiss and
Julio Collado{-}Vides and
Robert P. Gunsalus and
Ian T. Paulsen and
Peter D. Karp},
title = {EcoCyc: fusing model organism databases with systems biology},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {605--612},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1027},
doi = {10.1093/NAR/GKS1027},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KeselerMPSGBFHKKLMOPSSSTWWCGPK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KimCDY13,
author = {Hanjoo Kim and
Pablo Cordero and
Rhiju Das and
Sungroh Yoon},
title = {HiTRACE-Web: an online tool for robust analysis of high-throughput
capillary electrophoresis},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {492--498},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt501},
doi = {10.1093/NAR/GKT501},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KimCDY13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KimKL13,
author = {Eiru Kim and
Hanhae Kim and
Insuk Lee},
title = {JiffyNet: a web-based instant protein network modeler for newly sequenced
species},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {192--197},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt419},
doi = {10.1093/NAR/GKT419},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/KimKL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KimSLPKL13,
author = {Jeongkyun Kim and
Seongeun So and
Hee{-}Jin Lee and
Jong{-}Chan Park and
Jung{-}Jae Kim and
Hyunju Lee},
title = {DigSee: disease gene search engine with evidence sentences (version
cancer)},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {510--517},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt531},
doi = {10.1093/NAR/GKT531},
timestamp = {Thu, 04 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KimSLPKL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KiranOSB13,
author = {Anmol M. Kiran and
John J. O'Mahony and
Komal Sanjeev and
Pavel V. Baranov},
title = {Darned in 2013: inclusion of model organisms and linking with Wikipedia},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {258--261},
year = {2013},
url = {https://doi.org/10.1093/nar/gks961},
doi = {10.1093/NAR/GKS961},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KiranOSB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KirsanovZASKA13,
author = {Dmitry D. Kirsanov and
Olga Zanegina and
Evgeniy Aksianov and
Sergei A. Spirin and
Anna S. Karyagina and
Andrei Alexeevski},
title = {{NPIDB:} nucleic acid - protein interaction database},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {517--523},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1199},
doi = {10.1093/NAR/GKS1199},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KirsanovZASKA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KirshnerNL13,
author = {Daniel A. Kirshner and
Jerome P. Nilmeier and
Felice C. Lightstone},
title = {Catalytic site identification - a web server to identify catalytic
site structural matches throughout {PDB}},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {256--265},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt403},
doi = {10.1093/NAR/GKT403},
timestamp = {Sun, 12 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/KirshnerNL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KjaerulffWKJKALBOT13,
author = {Sonny Kim Kj{\ae}rulff and
Louis Wich and
Jens Kringelum and
Ulrik Plesner Jacobsen and
Irene Kouskoumvekaki and
Karine Audouze and
Ole Lund and
S{\o}ren Brunak and
Tudor I. Oprea and
Olivier Taboureau},
title = {ChemProt-2.0: visual navigation in a disease chemical biology database},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {464--469},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1166},
doi = {10.1093/NAR/GKS1166},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/KjaerulffWKJKALBOT13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KozmaST13,
author = {D{\'{a}}niel Kozma and
Istv{\'{a}}n Simon and
G{\'{a}}bor E. Tusn{\'{a}}dy},
title = {{PDBTM:} Protein Data Bank of transmembrane proteins after 8 years},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {524--529},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1169},
doi = {10.1093/NAR/GKS1169},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/KozmaST13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KrugerRPG13,
author = {Dennis M. Kr{\"{u}}ger and
Prakash Chandra Rathi and
Christopher Pfleger and
Holger Gohlke},
title = {{CNA} web server: rigidity theory-based thermal unfolding simulations
of proteins for linking structure, (thermo-)stability, and function},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {340--348},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt292},
doi = {10.1093/NAR/GKT292},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KrugerRPG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KruppIMHGT13,
author = {Markus Krupp and
Timo Itzel and
Thorsten Maass and
Andreas Hildebrandt and
Peter R. Galle and
Andreas Teufel},
title = {CellLineNavigator: a workbench for cancer cell line analysis},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {942--948},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1012},
doi = {10.1093/NAR/GKS1012},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KruppIMHGT13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KulakovskiyMSKVBM13,
author = {Ivan V. Kulakovskiy and
Yulia A. Medvedeva and
Ulf Schaefer and
Artem S. Kasianov and
Ilya E. Vorontsov and
Vladimir B. Bajic and
Vsevolod J. Makeev},
title = {{HOCOMOCO:} a comprehensive collection of human transcription factor
binding sites models},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {195--202},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1089},
doi = {10.1093/NAR/GKS1089},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KulakovskiyMSKVBM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KurakuZNK13,
author = {Shigehiro Kuraku and
Christian M. Zmasek and
Osamu Nishimura and
Kazutaka Katoh},
title = {aLeaves facilitates on-demand exploration of metazoan gene family
trees on {MAFFT} sequence alignment server with enhanced interactivity},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {22--28},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt389},
doi = {10.1093/NAR/GKT389},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KurakuZNK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KyodaAMNSOUAFSKNO13,
author = {Koji Kyoda and
Eru Adachi and
Eriko Masuda and
Yoko Nagai and
Yoko Suzuki and
Taeko Oguro and
Mitsuru Urai and
Ryoko Arai and
Mari Furukawa and
Kumiko Shimada and
Junko Kuramochi and
Eriko Nagai and
Shuichi Onami},
title = {{WDDD:} Worm Developmental Dynamics Database},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {732--737},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1107},
doi = {10.1093/NAR/GKS1107},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KyodaAMNSOUAFSKNO13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LappalainenLSHSGCMCZPAFC13,
author = {Ilkka Lappalainen and
John Lopez and
Lisa Skipper and
Timothy Hefferon and
J. Dylan Spalding and
John Garner and
Chao Chen and
Michael Maguire and
Matthew Corbett and
George Zhou and
Justin E. Paschall and
Victor Ananiev and
Paul Flicek and
Deanna M. Church},
title = {dbVar and DGVa: public archives for genomic structural variation},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {936--941},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1213},
doi = {10.1093/NAR/GKS1213},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LappalainenLSHSGCMCZPAFC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LeeTWP13,
author = {Tae{-}Ho Lee and
Haibao Tang and
Xiyin Wang and
Andrew H. Paterson},
title = {{PGDD:} a database of gene and genome duplication in plants},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {1152--1158},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1104},
doi = {10.1093/NAR/GKS1104},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LeeTWP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LeibovichPYM13,
author = {Limor Leibovich and
Inbal Paz and
Zohar Yakhini and
Yael Mandel{-}Gutfreund},
title = {DRIMust: a web server for discovering rank imbalanced motifs using
suffix trees},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {174--179},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt407},
doi = {10.1093/NAR/GKT407},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LeibovichPYM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LenfantHVBMC13,
author = {Nicolas Lenfant and
Thierry Hotelier and
Eric Velluet and
Yves Bourne and
Pascale Marchot and
Arnaud Chatonnet},
title = {ESTHER, the database of the {\(\alpha\)}/{\(\beta\)}-hydrolase fold
superfamily of proteins: tools to explore diversity of functions},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {423--429},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1154},
doi = {10.1093/NAR/GKS1154},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LenfantHVBMC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LeroyFIMIFS13,
author = {Bernard Leroy and
Jean Louis Fournier and
Chikashi Ishioka and
Paola Monti and
Alberto Inga and
Gilberto Fronza and
Thierry Soussi},
title = {The {TP53} website: an integrative resource centre for the {TP53}
mutation database and {TP53} mutant analysis},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {962--969},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1033},
doi = {10.1093/NAR/GKS1033},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LeroyFIMIFS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LewisSABBCCDFGHJKKMMMORSSVYO13,
author = {Tony E. Lewis and
Ian Sillitoe and
Antonina Andreeva and
Tom L. Blundell and
Daniel W. A. Buchan and
Cyrus Chothia and
Alison L. Cuff and
Jose M. Dana and
Ioannis Filippis and
Julian Gough and
Sarah Hunter and
David T. Jones and
Lawrence A. Kelley and
Gerard J. Kleywegt and
Federico Minneci and
Alex L. Mitchell and
Alexey G. Murzin and
Bernardo Ochoa{-}Monta{\~{n}}o and
Owen J. L. Rackham and
James Smith and
Michael J. E. Sternberg and
Sameer Velankar and
Corin Yeats and
Christine A. Orengo},
title = {Genome3D: a {UK} collaborative project to annotate genomic sequences
with predicted 3D structures based on {SCOP} and {CATH} domains},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {499--507},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1266},
doi = {10.1093/NAR/GKS1266},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/LewisSABBCCDFGHJKKMMMORSSVYO13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LiHCNHK13,
author = {Lei Li and
Dandan Huang and
Man Kit Cheung and
Wenyan Nong and
Qianli Huang and
Hoi Shan Kwan},
title = {{BSRD:} a repository for bacterial small regulatory {RNA}},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {233--238},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1264},
doi = {10.1093/NAR/GKS1264},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LiHCNHK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LiWXSW13,
author = {Mulin Jun Li and
Lily Yan Wang and
Zhengyuan Xia and
Pak Chung Sham and
Junwen Wang},
title = {{GWAS3D:} detecting human regulatory variants by integrative analysis
of genome-wide associations, chromosome interactions and histone modifications},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {150--158},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt456},
doi = {10.1093/NAR/GKT456},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LiWXSW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LiXYSGT13,
author = {Qian Li and
Jun{-}Feng Xiang and
Qian{-}Fan Yang and
Hong{-}Xia Sun and
Ai{-}Jiao Guan and
Ya{-}Lin Tang},
title = {{G4LDB:} a database for discovering and studying G-quadruplex ligands},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {1115--1123},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1101},
doi = {10.1093/NAR/GKS1101},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LiXYSGT13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LinC13,
author = {Chih{-}Kang Lin and
Chien{-}Yu Chen},
title = {PiDNA: predicting protein-DNA interactions with structural models},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {523--530},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt388},
doi = {10.1093/NAR/GKT388},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LinC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LohseDKB13,
author = {Marc Lohse and
Oliver Drechsel and
Sabine Kahlau and
Ralph Bock},
title = {OrganellarGenomeDRAW - a suite of tools for generating physical maps
of plastid and mitochondrial genomes and visualizing expression data
sets},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {575--581},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt289},
doi = {10.1093/NAR/GKT289},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LohseDKB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LouisMC13,
author = {Alexandra Louis and
Matthieu Muffato and
Hugues Roest Crollius},
title = {Genomicus: five genome browsers for comparative genomics in eukaryota},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {700--705},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1156},
doi = {10.1093/NAR/GKS1156},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LouisMC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LuHSLBCCCH13,
author = {Cheng{-}Tsung Lu and
Kai{-}Yao Huang and
Min{-}Gang Su and
Tzong{-}Yi Lee and
Neil Arvin Breta{\~{n}}a and
Wen{-}Chi Chang and
Yi{-}Ju Chen and
Yu{-}Ju Chen and
Hsien{-}Da Huang},
title = {dbPTM 3.0: an informative resource for investigating substrate site
specificity and functional association of protein post-translational
modifications},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {295--305},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1229},
doi = {10.1093/NAR/GKS1229},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LuHSLBCCCH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LubbockKHO13,
author = {Alexander L. R. Lubbock and
Elad Katz and
David J. Harrison and
Ian M. Overton},
title = {{TMA} Navigator: network inference, patient stratification and survival
analysis with tissue microarray data},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {562--568},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt529},
doi = {10.1093/NAR/GKT529},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/LubbockKHO13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LucasSEGDMFG13,
author = {Xavier Lucas and
Christian Senger and
Anika Erxleben and
Bj{\"{o}}rn A. Gr{\"{u}}ning and
Kersten D{\"{o}}ring and
Johannes Mosch and
Stephan Flemming and
Stefan G{\"{u}}nther},
title = {StreptomeDB: a resource for natural compounds isolated from \emph{Streptomyces}
species},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {1130--1136},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1253},
doi = {10.1093/NAR/GKS1253},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LucasSEGDMFG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MachnickaMOPKOJKDRHBG13,
author = {Magdalena A. Machnicka and
Kaja Milanowska and
Okan Osman Oglou and
Elzbieta Purta and
Malgorzata Kurkowska and
Anna Olchowik and
Witold Januszewski and
Sebastian Kalinowski and
Stanislaw Dunin{-}Horkawicz and
Kristian Rother and
Mark Helm and
Janusz M. Bujnicki and
Henri Grosjean},
title = {{MODOMICS:} a database of {RNA} modification pathways - 2013 update},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {262--267},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1007},
doi = {10.1093/NAR/GKS1007},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MachnickaMOPKOJKDRHBG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Madadkar-SobhaniG13,
author = {Armin Madadkar{-}Sobhani and
Victor Guallar},
title = {{PELE} web server: atomistic study of biomolecular systems at your
fingertips},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {322--328},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt454},
doi = {10.1093/NAR/GKT454},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Madadkar-SobhaniG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MagisTN13,
author = {Cedrik Magis and
Paolo Di Tommaso and
C{\'{e}}dric Notredame},
title = {{T-RMSD:} a web server for automated fine-grained protein structural
classification},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {358--362},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt383},
doi = {10.1093/NAR/GKT383},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MagisTN13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MakitaKYDMNMTITBKWMT13,
author = {Yuko Makita and
Norio Kobayashi and
Yuko Yoshida and
Koji Doi and
Yoshiki Mochizuki and
Koro Nishikata and
Akihiro Matsushima and
Satoshi Takahashi and
Manabu Ishii and
Terue Takatsuki and
Rinki Bhatia and
Zolzaya Khadbaatar and
Hajime Watabe and
Hiroshi Masuya and
Tetsuro Toyoda},
title = {PosMed: ranking genes and bioresources based on Semantic Web Association
Study},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {109--114},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt474},
doi = {10.1093/NAR/GKT474},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MakitaKYDMNMTITBKWMT13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MangalSSRA13,
author = {Manu Mangal and
Parul Sagar and
Harinder Singh and
Gajendra P. S. Raghava and
Subhash M. Agarwal},
title = {{NPACT:} Naturally Occurring Plant-based Anti-cancer Compound-Activity-Target
database},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {1124--1129},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1047},
doi = {10.1093/NAR/GKS1047},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MangalSSRA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Marchler-BauerZCDGGGGHLLLMSTYZB13,
author = {Aron Marchler{-}Bauer and
Chanjuan Zheng and
Farideh Chitsaz and
Myra K. Derbyshire and
Lewis Y. Geer and
Renata C. Geer and
Noreen R. Gonzales and
Marc Gwadz and
David I. Hurwitz and
Christopher J. Lanczycki and
Fu Lu and
Shennan Lu and
Gabriele H. Marchler and
James S. Song and
Narmada Thanki and
Roxanne A. Yamashita and
Dachuan Zhang and
Stephen H. Bryant},
title = {{CDD:} conserved domains and protein three-dimensional structure},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {348--352},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1243},
doi = {10.1093/NAR/GKS1243},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/Marchler-BauerZCDGGGGHLLLMSTYZB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MargreitterPZ13,
author = {Christian Margreitter and
Drazen Petrov and
Bojan Zagrovic},
title = {Vienna-PTM web server: a toolkit for {MD} simulations of protein post-translational
modifications},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {422--426},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt416},
doi = {10.1093/NAR/GKT416},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MargreitterPZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MarygoldLSGTSWc13,
author = {Steven J. Marygold and
Paul C. Leyland and
Ruth L. Seal and
Joshua L. Goodman and
Jim Thurmond and
Victor B. Strelets and
Robert J. Wilson},
title = {FlyBase: improvements to the bibliography},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {751--757},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1024},
doi = {10.1093/NAR/GKS1024},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MarygoldLSGTSWc13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MassonHCBGEBXM13,
author = {Patrick Masson and
Chantal Hulo and
Edouard De Castro and
Hans Bitter and
Lore Gruenbaum and
Laurent Essioux and
Lydie Bougueleret and
Ioannis Xenarios and
Philippe Le Mercier},
title = {ViralZone: recent updates to the virus knowledge resource},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {579--583},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1220},
doi = {10.1093/NAR/GKS1220},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MassonHCBGEBXM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/McGuffinBR13,
author = {Liam J. McGuffin and
Maria T. Buenavista and
Daniel B. Roche},
title = {The ModFOLD4 server for the quality assessment of 3D protein models},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {368--372},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt294},
doi = {10.1093/NAR/GKT294},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/McGuffinBR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/McWilliamLUSPBCL13,
author = {Hamish McWilliam and
Weizhong Li and
Mahmut Uludag and
Silvano Squizzato and
Young Mi Park and
Nicola Buso and
Andrew Peter Cowley and
Rodrigo Lopez},
title = {Analysis Tool Web Services from the {EMBL-EBI}},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {597--600},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt376},
doi = {10.1093/NAR/GKT376},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/McWilliamLUSPBCL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MedinaSSMAEBD13,
author = {Ignacio Medina and
Francisco Salavert and
Rub{\'{e}}n S{\'{a}}nchez and
Alejandro de Mar{\'{\i}}a and
Roberto Alonso and
Pablo Escobar and
Marta Bleda and
Joaqu{\'{\i}}n Dopazo},
title = {Genome Maps, a new generation genome browser},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {41--46},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt530},
doi = {10.1093/NAR/GKT530},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/MedinaSSMAEBD13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MeyerZHKKWSRRRRPMLLLKHHHHGGGFDDCCBHK13,
author = {Laurence R. Meyer and
Ann S. Zweig and
Angie S. Hinrichs and
Donna Karolchik and
Robert M. Kuhn and
Matthew C. Wong and
Cricket A. Sloan and
Kate R. Rosenbloom and
Greg Roe and
Brooke L. Rhead and
Brian J. Raney and
Andy Pohl and
Venkat S. Malladi and
Chin H. Li and
Brian T. Lee and
Katrina Learned and
Vanessa Kirkup and
Fan Hsu and
Steven G. Heitner and
Rachel A. Harte and
Maximilian Haeussler and
Luvina Guruvadoo and
Mary Goldman and
Belinda Giardine and
Pauline A. Fujita and
Timothy R. Dreszer and
Mark Diekhans and
Melissa S. Cline and
Hiram Clawson and
Galt P. Barber and
David Haussler and
W. James Kent},
title = {The {UCSC} Genome Browser database: extensions and updates 2013},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {64--69},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1048},
doi = {10.1093/NAR/GKS1048},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MeyerZHKKWSRRRRPMLLLKHHHHGGGFDDCCBHK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MiMT13,
author = {Huaiyu Mi and
Anushya Muruganujan and
Paul D. Thomas},
title = {{PANTHER} in 2013: modeling the evolution of gene function, and other
gene attributes, in the context of phylogenetic trees},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {377--386},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1118},
doi = {10.1093/NAR/GKS1118},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MiMT13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MilanowskaMLSBMNRB13,
author = {Kaja Milanowska and
Katarzyna Mikolajczak and
Anna Lukasik and
Marcin Skorupski and
Zuzanna Balcer and
Magdalena A. Machnicka and
Martyna Nowacka and
Kristian Rother and
Janusz M. Bujnicki},
title = {RNApathwaysDB - a database of {RNA} maturation and decay pathways},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {268--272},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1052},
doi = {10.1093/NAR/GKS1052},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MilanowskaMLSBMNRB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MinguezLPB13,
author = {Pablo Minguez and
Ivica Letunic and
Luca Parca and
Peer Bork},
title = {PTMcode: a database of known and predicted functional associations
between post-translational modifications in proteins},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {306--311},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1230},
doi = {10.1093/NAR/GKS1230},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MinguezLPB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MitraSZ13,
author = {Pralay Mitra and
David Shultis and
Yang Zhang},
title = {EvoDesign: \emph{de novo} protein design based on structural and evolutionary
profiles},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {273--280},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt384},
doi = {10.1093/NAR/GKT384},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MitraSZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Nadzirin0AR13,
author = {Nurul Nadzirin and
Peter Willett and
Peter J. Artymiuk and
Mohd Firdaus Raih},
title = {{IMAAAGINE:} a webserver for searching hypothetical 3D amino acid
side chain arrangements in the Protein Data Bank},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {432--440},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt431},
doi = {10.1093/NAR/GKT431},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Nadzirin0AR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/NakamuraCK13,
author = {Yasukazu Nakamura and
Guy Cochrane and
Ilene Karsch{-}Mizrachi},
title = {The International Nucleotide Sequence Database Collaboration},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {21--24},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1084},
doi = {10.1093/NAR/GKS1084},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/NakamuraCK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/NakayaKIHKMOTTYYKG13,
author = {Akihiro Nakaya and
Toshiaki Katayama and
Masumi Itoh and
Kazushi Hiranuka and
Shuichi Kawashima and
Yuki Moriya and
Shujiro Okuda and
Michihiro Tanaka and
Toshiaki Tokimatsu and
Yoshihiro Yamanishi and
Akiyasu C. Yoshizawa and
Minoru Kanehisa and
Susumu Goto},
title = {{KEGG} {OC:} a large-scale automatic construction of taxonomy-based
ortholog clusters},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {353--357},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1239},
doi = {10.1093/NAR/GKS1239},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/NakayaKIHKMOTTYYKG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/NijveenKEHV13,
author = {Harm Nijveen and
Martijn van Kaauwen and
Danny G. Esselink and
Brechtje Hoegen and
Ben Vosman},
title = {QualitySNPng: a user-friendly {SNP} detection and visualization tool},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {587--590},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt333},
doi = {10.1093/NAR/GKT333},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/NijveenKEHV13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/NimWT13,
author = {Tri Hieu Nim and
Jacob K. White and
Lisa Tucker{-}Kellogg},
title = {{SPEDRE:} a web server for estimating rate parameters for cell signaling
dynamics in data-rich environments},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {187--191},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt459},
doi = {10.1093/NAR/GKT459},
timestamp = {Mon, 08 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/NimWT13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Nogales-CadenasJTATVPS13,
author = {Rub{\'{e}}n Nogales{-}Cadenas and
Slavica Jonic and
Florence Tama and
A. A. Arteni and
Daniel Tabas{-}Madrid and
Miguel V{\'{a}}zquez and
Alberto D. Pascual{-}Montano and
Carlos Oscar S{\'{a}}nchez Sorzano},
title = {3DEM Loupe: analysis of macromolecular dynamics using structures from
electron microscopy},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {363--367},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt385},
doi = {10.1093/NAR/GKT385},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Nogales-CadenasJTATVPS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/NussbaumerMRPBSGS13,
author = {Thomas Nussbaumer and
Mihaela M. Martis and
Stephan K. Roessner and
Matthias Pfeifer and
Kai Christian Bader and
Sapna Sharma and
Heidrun Gundlach and
Manuel Spannagl},
title = {{MIPS} PlantsDB: a database framework for comparative plant genome
research},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {1144--1151},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1153},
doi = {10.1093/NAR/GKS1153},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/NussbaumerMRPBSGS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/OatesRIGMXDUOKDG13,
author = {Matt E. Oates and
Pedro Romero and
Takashi Ishida and
Mohamed F. Ghalwash and
Marcin J. Mizianty and
Bin Xue and
Zsuzsanna Doszt{\'{a}}nyi and
Vladimir N. Uversky and
Zoran Obradovic and
Lukasz A. Kurgan and
A. Keith Dunker and
Julian Gough},
title = {D\({}^{\mbox{2}}\)P\({}^{\mbox{2}}\): database of disordered protein
predictions},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {508--516},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1226},
doi = {10.1093/NAR/GKS1226},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/OatesRIGMXDUOKDG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ObayashiOITMK13,
author = {Takeshi Obayashi and
Yasunobu Okamura and
Satoshi Ito and
Shu Tadaka and
Ikuko N. Motoike and
Kengo Kinoshita},
title = {COXPRESdb: a database of comparative gene coexpression networks of
eleven species for mammals},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {1014--1020},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1014},
doi = {10.1093/NAR/GKS1014},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ObayashiOITMK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/OgasawaraMKKNOT13,
author = {Osamu Ogasawara and
Jun Mashima and
Yuichi Kodama and
Eli Kaminuma and
Yasukazu Nakamura and
Kousaku Okubo and
Toshihisa Takagi},
title = {{DDBJ} new system and service refactoring},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {25--29},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1152},
doi = {10.1093/NAR/GKS1152},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/OgasawaraMKKNOT13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/OrloffIMEK13,
author = {David N. Orloff and
Janet H. Iwasa and
Maryann E. Martone and
Mark H. Ellisman and
Caroline M. Kane},
title = {The cell: an image library-CCDB: a curated repository of microscopy
data},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {1241--1250},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1257},
doi = {10.1093/NAR/GKS1257},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/OrloffIMEK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/OuyangZGLK13,
author = {Xuchang Ouyang and
Shuo Zhou and
Zemei Ge and
Runtao Li and
Chee Keong Kwoh},
title = {CovalentDock Cloud: a web server for automated covalent docking},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {329--332},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt406},
doi = {10.1093/NAR/GKT406},
timestamp = {Mon, 31 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/OuyangZGLK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PachkovBAON13,
author = {Mikhail Pachkov and
Piotr J. Balwierz and
Phil Arnold and
Evgeniy A. Ozonov and
Erik van Nimwegen},
title = {SwissRegulon, a database of genome-wide annotations of regulatory
sites: recent updates},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {214--220},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1145},
doi = {10.1093/NAR/GKS1145},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PachkovBAON13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PalopoliLP13,
author = {Nicolas Palopoli and
Esteban Lanzarotti and
Gustavo D. Parisi},
title = {BeEP Server: using evolutionary information for quality assessment
of protein structure models},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {398--405},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt453},
doi = {10.1093/NAR/GKT453},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PalopoliLP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PanSSZHL13,
author = {Bohu Pan and
Jia Sheng and
Weining Sun and
Yinhong Zhao and
Pei Hao and
Xuan Li},
title = {OrysPSSP: a comparative Platform for Small Secreted Proteins from
rice and other plants},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {1192--1198},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1090},
doi = {10.1093/NAR/GKS1090},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PanSSZHL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ParaskevopoulouGKRMDH13,
author = {Maria D. Paraskevopoulou and
Georgios K. Georgakilas and
Nikos Kostoulas and
Martin Reczko and
Manolis Maragkakis and
Theodore M. Dalamagas and
Artemis G. Hatzigeorgiou},
title = {DIANA-LncBase: experimentally verified and computationally predicted
microRNA targets on long non-coding RNAs},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {239--245},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1246},
doi = {10.1093/NAR/GKS1246},
timestamp = {Fri, 07 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ParaskevopoulouGKRMDH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ParaskevopoulouGKVVRFDH13,
author = {Maria D. Paraskevopoulou and
Georgios K. Georgakilas and
Nikos Kostoulas and
Ioannis S. Vlachos and
Thanasis Vergoulis and
Martin Reczko and
Christos Filippidis and
Theodore Dalamagas and
Artemis G. Hatzigeorgiou},
title = {DIANA-microT web server v5.0: service integration into miRNA functional
analysis workflows},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {169--173},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt393},
doi = {10.1093/NAR/GKT393},
timestamp = {Fri, 07 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ParaskevopoulouGKVVRFDH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ParaskevopoulouVAS13,
author = {Maria D. Paraskevopoulou and
Ioannis S. Vlachos and
Emmanouil Athanasiadis and
George M. Spyrou},
title = {BiDaS: a web-based Monte Carlo BioData Simulator based on sequence/feature
characteristics},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {582--586},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt420},
doi = {10.1093/NAR/GKT420},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ParaskevopoulouVAS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ParcaFAH13,
author = {Luca Parca and
Fabrizio Ferr{\`{e}} and
Gabriele Ausiello and
Manuela Helmer{-}Citterich},
title = {Nucleos: a web server for the identification of nucleotide-binding
sites in protein structures},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {281--285},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt390},
doi = {10.1093/NAR/GKT390},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ParcaFAH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PawlowskiBB13,
author = {Marcin Pawlowski and
Albert Bogdanowicz and
Janusz M. Bujnicki},
title = {QA-RecombineIt: a server for quality assessment and recombination
of protein models},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {389--397},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt408},
doi = {10.1093/NAR/GKT408},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PawlowskiBB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PedruzziRACKCBCBPRXB13,
author = {Ivo Pedruzzi and
Catherine Rivoire and
Andrea H. Auchincloss and
Elisabeth Coudert and
Guillaume Keller and
Edouard De Castro and
Delphine Baratin and
B{\'{e}}atrice A. Cuche and
Lydie Bougueleret and
Sylvain Poux and
Nicole Redaschi and
Ioannis Xenarios and
Alan J. Bridge},
title = {{HAMAP} in 2013, new developments in the protein family classification
and annotation system},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {584--589},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1157},
doi = {10.1093/NAR/GKS1157},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/PedruzziRACKCBCBPRXB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PengXZHWTLLCFDKLX13,
author = {Kai Peng and
Wei Xu and
Jianyong Zheng and
Kegui Huang and
Huisong Wang and
Jiansong Tong and
Zhifeng Lin and
Jun Liu and
Wenqing Cheng and
Dong Fu and
Pan Du and
Warren A. Kibbe and
Simon M. Lin and
Tian Xia},
title = {The disease and gene annotations {(DGA):} an annotation resource for
human disease},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {553--560},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1244},
doi = {10.1093/NAR/GKS1244},
timestamp = {Tue, 09 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PengXZHWTLLCFDKLX13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PersDTLB13,
author = {Tune H. Pers and
Piotr Dworzynski and
Cecilia Engel Thomas and
Kasper Lage and
S{\o}ren Brunak},
title = {MetaRanker 2.0: a web server for prioritization of genetic variation
data},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {104--108},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt387},
doi = {10.1093/NAR/GKT387},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PersDTLB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PipesLBPPBKWTTZCSMK13,
author = {Lenore Pipes and
Sheng Li and
Marjan Bozinoski and
Robert Palermo and
Xinxia Peng and
Philip D. Blood and
Sara Kelly and
Jeffrey M. Weiss and
Jean Thierry{-}Mieg and
Danielle Thierry{-}Mieg and
Paul Zumbo and
Ronghua Chen and
Gary P. Schroth and
Christopher E. Mason and
Michael G. Katze},
title = {The non-human primate reference transcriptome resource {(NHPRTR)}
for comparative functional genomics},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {906--914},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1268},
doi = {10.1093/NAR/GKS1268},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PipesLBPPBKWTTZCSMK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PizarroHLH13,
author = {Angel D. Pizarro and
Katharina Hayer and
Nicholas F. Lahens and
John B. Hogenesch},
title = {CircaDB: a database of mammalian circadian gene expression profiles},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {1009--1013},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1161},
doi = {10.1093/NAR/GKS1161},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PizarroHLH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/QuastPYGSYPG13,
author = {Christian Quast and
Elmar Pruesse and
Pelin Yilmaz and
Jan Gerken and
Timmy Schweer and
Pablo Yarza and
J{\"{o}}rg Peplies and
Frank Oliver Gl{\"{o}}ckner},
title = {The {SILVA} ribosomal {RNA} gene database project: improved data processing
and web-based tools},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {590--596},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1219},
doi = {10.1093/NAR/GKS1219},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/QuastPYGSYPG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RahrigPLZ13,
author = {Ryan R. Rahrig and
Anton I. Petrov and
Neocles Leontis and
Craig L. Zirbel},
title = {{R3D} Align web server for global nucleotide to nucleotide alignments
of {RNA} 3D structures},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {15--21},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt417},
doi = {10.1093/NAR/GKT417},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RahrigPLZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RobinsonHDL13,
author = {Scott W. Robinson and
Pawel Herzyk and
Julian A. T. Dow and
David P. Leader},
title = {FlyAtlas: database of gene expression in the tissues of \emph{Drosophila
melanogaster}},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {744--750},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1141},
doi = {10.1093/NAR/GKS1141},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RobinsonHDL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RobinsonHMLM13,
author = {James Robinson and
Jason A. Halliwell and
Hamish McWilliam and
Rodrigo Lopez and
Steven G. E. Marsh},
title = {{IPD} - the Immuno Polymorphism Database},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {1234--1240},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1140},
doi = {10.1093/NAR/GKS1140},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RobinsonHMLM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RobinsonHMLPM13,
author = {James Robinson and
Jason A. Halliwell and
Hamish McWilliam and
Rodrigo Lopez and
Peter Parham and
Steven G. E. Marsh},
title = {The {IMGT/HLA} database},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {1222--1227},
year = {2013},
url = {https://doi.org/10.1093/nar/gks949},
doi = {10.1093/NAR/GKS949},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RobinsonHMLPM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RocheBM13,
author = {Daniel B. Roche and
Maria T. Buenavista and
Liam J. McGuffin},
title = {The FunFOLD2 server for the prediction of protein-ligand interactions},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {303--307},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt498},
doi = {10.1093/NAR/GKT498},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RocheBM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RodriguezMEPWLVT13,
author = {Jose Manuel Rodriguez and
Paolo Maietta and
Iakes Ezkurdia and
Alessandro Pietrelli and
Jan{-}Jaap Wesselink and
Gonzalo L{\'{o}}pez and
Alfonso Valencia and
Michael L. Tress},
title = {{APPRIS:} annotation of principal and alternative splice isoforms},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {110--117},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1058},
doi = {10.1093/NAR/GKS1058},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/RodriguezMEPWLVT13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RoseBBCDDGGPQQRWYZBB13,
author = {Peter W. Rose and
Chunxiao Bi and
Wolfgang Bluhm and
Cole H. Christie and
Dimitris Dimitropoulos and
Shuchismita Dutta and
Rachel Kramer Green and
David S. Goodsell and
Andreas Prlic and
Martha Quesada and
Greg B. Quinn and
Alexander G. Ramos and
John D. Westbrook and
Jasmine Young and
Christine Zardecki and
Helen M. Berman and
Philip E. Bourne},
title = {The {RCSB} Protein Data Bank: new resources for research and education},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {475--482},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1200},
doi = {10.1093/NAR/GKS1200},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RoseBBCDDGGPQQRWYZBB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RosenbloomSMDLKWMFHLBHDLWZKKHK13,
author = {Kate R. Rosenbloom and
Cricket A. Sloan and
Venkat S. Malladi and
Timothy R. Dreszer and
Katrina Learned and
Vanessa Kirkup and
Matthew C. Wong and
Morgan Maddren and
Ruihua Fang and
Steven G. Heitner and
Brian T. Lee and
Galt P. Barber and
Rachel A. Harte and
Mark Diekhans and
Jeffrey C. Long and
Steven P. Wilder and
Ann S. Zweig and
Donna Karolchik and
Robert M. Kuhn and
David Haussler and
W. James Kent},
title = {{ENCODE} Data in the {UCSC} Genome Browser: year 5 update},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {56--63},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1172},
doi = {10.1093/NAR/GKS1172},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RosenbloomSMDLKWMFHLBHDLWZKKHK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RubinsteinMLKMOHGSWHCKHJJKUDFHO13,
author = {Wendy S. Rubinstein and
Donna R. Maglott and
Jennifer M. Lee and
Brandi L. Kattman and
Adriana J. Malheiro and
Michael Ovetsky and
Vichet Hem and
Vyatcheslav Gorelenkov and
Guangfeng Song and
Craig Wallin and
Nora Husain and
Shanmuga Chitipiralla and
Kenneth S. Katz and
Douglas Hoffman and
Wonhee Jang and
Mark Johnson and
Fedor Karmanov and
Alexander Ukrainchik and
Mikhail Denisenko and
Cathy Fomous and
Kathy Hudson and
James Ostell},
title = {The {NIH} genetic testing registry: a new, centralized database of
genetic tests to enable access to comprehensive information and improve
transparency},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {925--935},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1173},
doi = {10.1093/NAR/GKS1173},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RubinsteinMLKMOHGSWHCKHJJKUDFHO13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RusinovaFYKMCCH13,
author = {Irina Rusinova and
Sam Forster and
Simon Yu and
Anitha Kannan and
Marion Masse and
Helen Cumming and
Ross Chapman and
Paul J. Hertzog},
title = {{INTERFEROME} v2.0: an updated database of annotated interferon-regulated
genes},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {1040--1046},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1215},
doi = {10.1093/NAR/GKS1215},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RusinovaFYKMCCH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RusticiKBBDEFHIKKMMMPPRSTTTWWBPS13,
author = {Gabriella Rustici and
Nikolay Kolesnikov and
Marco Brandizi and
Tony Burdett and
Miroslaw Dylag and
Ibrahim Emam and
Anna Farne and
Emma Hastings and
Jon C. Ison and
Maria Keays and
Natalja Kurbatova and
James Malone and
Roby Mani and
Annalisa Mupo and
Rui Pedro Pereira and
Ekaterina Pilicheva and
Johan Rung and
Anjan Sharma and
Y. Amy Tang and
Tobias Ternent and
Andrew Tikhonov and
Danielle Welter and
Eleanor Williams and
Alvis Brazma and
Helen E. Parkinson and
Ugis Sarkans},
title = {ArrayExpress update - trends in database growth and links to data
analysis tools},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {987--990},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1174},
doi = {10.1093/NAR/GKS1174},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RusticiKBBDEFHIKKMMMPPRSTTTWWBPS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SabarinathanTSHSG13,
author = {Radhakrishnan Sabarinathan and
Hakim Tafer and
Stefan E. Seemann and
Ivo L. Hofacker and
Peter F. Stadler and
Jan Gorodkin},
title = {The RNAsnp web server: predicting {SNP} effects on local {RNA} secondary
structure},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {475--479},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt291},
doi = {10.1093/NAR/GKT291},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SabarinathanTSHSG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SalesCMR13,
author = {Gabriele Sales and
Enrica Calura and
Paolo G. V. Martini and
Chiara Romualdi},
title = {Graphite Web: web tool for gene set analysis exploiting pathway topology},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {89--97},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt386},
doi = {10.1093/NAR/GKT386},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SalesCMR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SalgadoPGSMGWSMMSAALPHBBPOLJVMHMC13,
author = {Heladia Salgado and
Mart{\'{\i}}n Peralta{-}Gil and
Socorro Gama{-}Castro and
Alberto Santos{-}Zavaleta and
Luis Mu{\~{n}}iz{-}Rascado and
Jair S. Garc{\'{\i}}a{-}Sotelo and
Verena Weiss and
Hilda Solano{-}Lira and
Irma Mart{\'{\i}}nez{-}Flores and
Alejandra Medina{-}Rivera and
Gerardo Salgado{-}Osorio and
Shirley Alquicira{-}Hern{\'{a}}ndez and
Kevin Alquicira{-}Hern{\'{a}}ndez and
Alejandra L{\'{o}}pez{-}Fuentes and
Liliana Porr{\'{o}}n{-}Sotelo and
Araceli M. Huerta and
C{\'{e}}sar Bonavides{-}Mart{\'{\i}}nez and
Yalbi Itzel Balderas{-}Mart{\'{\i}}nez and
Lucia Pannier and
Maricela Olvera and
Aurora Labastida and
Ver{\'{o}}nica Jim{\'{e}}nez{-}Jacinto and
Leticia Vega{-}Alvarado and
Victor del Moral{-}Ch{\'{a}}vez and
Alfredo Hern{\'{a}}ndez{-}Alvarez and
Enrique Morett and
Julio Collado{-}Vides},
title = {RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory
phrases, cross-validated gold standards and more},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {203--213},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1201},
doi = {10.1093/NAR/GKS1201},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SalgadoPGSMGWSMMSAALPHBBPOLJVMHMC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SandveGJGGHHLNNPRTCDFKLRFH13,
author = {Geir Kjetil Sandve and
Sveinung Gundersen and
Morten Johansen and
Ingrid Kristine Glad and
Krishanthi Gunathasan and
Lars Holden and
Marit Holden and
Knut Liest{\o}l and
St{\aa}le Nyg{\aa}rd and
Vegard Nygaard and
Jonas Paulsen and
Halfdan Rydbeck and
Kai Trengereid and
Trevor Clancy and
Finn Drabl{\o}s and
Egil Ferkingstad and
Mat{\'{u}}s Kalas and
Tonje Lien and
Morten Rye and
Arnoldo Frigessi and
Eivind Hovig},
title = {The Genomic HyperBrowser: an analysis web server for genome-scale
data},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {133--141},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt342},
doi = {10.1093/NAR/GKT342},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SandveGJGGHHLNNPRTCDFKLRFH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SanseverinoHDVAFLRE13,
author = {Walter Sanseverino and
Antonio Hermoso and
Raffaella D'Alessandro and
Anna V. Vlasova and
Giuseppe Andolfo and
Luigi Frusciante and
Ernesto Lowy{-}Gallego and
Guglielmo Roma and
Maria Raffaella Ercolano},
title = {PRGdb 2.0: towards a community-based database model for the analysis
of R-genes in plants},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {1167--1171},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1183},
doi = {10.1093/NAR/GKS1183},
timestamp = {Mon, 26 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SanseverinoHDVAFLRE13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SatoNTKMIOSIAN13,
author = {Yutaka Sato and
Nobukazu Namiki and
Hinako Takehisa and
Kaori Kamatsuki and
Hiroshi Minami and
Hiroshi Ikawa and
Hajime Ohyanagi and
Kazuhiko Sugimoto and
Jun{-}ichi Itoh and
Baltazar A. Antonio and
Yoshiaki Nagamura},
title = {RiceFREND: a platform for retrieving coexpressed gene networks in
rice},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {1214--1221},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1122},
doi = {10.1093/NAR/GKS1122},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SatoNTKMIOSIAN13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SatoTKMNIOSAN13,
author = {Yutaka Sato and
Hinako Takehisa and
Kaori Kamatsuki and
Hiroshi Minami and
Nobukazu Namiki and
Hiroshi Ikawa and
Hajime Ohyanagi and
Kazuhiko Sugimoto and
Baltazar A. Antonio and
Yoshiaki Nagamura},
title = {RiceXPro Version 3.0: expanding the informatics resource for rice
transcriptome},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {1206--1213},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1125},
doi = {10.1093/NAR/GKS1125},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SatoTKMNIOSAN13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SchmidtPBKHB13,
author = {Esther E. Schmidt and
Oliver Pelz and
Svetlana Buhlmann and
Grainne Kerr and
Thomas Horn and
Michael Boutros},
title = {GenomeRNAi: a database for cell-based and \emph{in vivo} RNAi phenotypes,
2013 update},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {1021--1026},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1170},
doi = {10.1093/NAR/GKS1170},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/SchmidtPBKHB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SchneiderCCMZBHMC13,
author = {Valerie A. Schneider and
Hsiu{-}Chuan Chen and
Cliff Clausen and
Peter A. Meric and
Zhigang Zhou and
Nathan Bouk and
Nora Husain and
Donna R. Maglott and
Deanna M. Church},
title = {Clone {DB:} an integrated {NCBI} resource for clone-associated data},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {1070--1078},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1164},
doi = {10.1093/NAR/GKS1164},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SchneiderCCMZBHMC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SchomburgCPSRLMUSGSS13,
author = {Ida Schomburg and
Antje Chang and
Sandra Placzek and
Carola S{\"{o}}hngen and
Michael Rother and
Maren Lang and
Cornelia Munaretto and
Susanne Ulas and
Michael Stelzer and
Andreas Grote and
Maurice Scheer and
Dietmar Schomburg},
title = {{BRENDA} in 2013: integrated reactions, kinetic data, enzyme function
data, improved disease classification: new options and contents in
{BRENDA}},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {764--772},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1049},
doi = {10.1093/NAR/GKS1049},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SchomburgCPSRLMUSGSS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Sebastian-LeonCSSMD13,
author = {Patricia Sebasti{\'{a}}n{-}Le{\'{o}}n and
Jos{\'{e}} Carbonell and
Francisco Salavert and
Rub{\'{e}}n S{\'{a}}nchez and
Ignacio Medina and
Joaqu{\'{\i}}n Dopazo},
title = {Inferring the functional effect of gene expression changes in signaling
pathways},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {213--217},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt451},
doi = {10.1093/NAR/GKT451},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/Sebastian-LeonCSSMD13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ShanmugasundramGWVJ13,
author = {Achchuthan Shanmugasundram and
Faviel F. Gonzalez{-}Galarza and
Jonathan M. Wastling and
Olga Vasieva and
Andrew R. Jones},
title = {Library of Apicomplexan Metabolic Pathways: a manually curated database
for metabolic pathways of apicomplexan parasites},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {706--713},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1139},
doi = {10.1093/NAR/GKS1139},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ShanmugasundramGWVJ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SharmanBPLMBDPSHN13,
author = {Joanna L. Sharman and
Helen E. Benson and
Adam J. Pawson and
Veny Lukito and
Chidochangu P. Mpamhanga and
Vincent Bombail and
Anthony P. Davenport and
John A. Peters and
Michael Spedding and
Anthony J. Harmar and
NC{-}IUPHAR},
title = {{IUPHAR-DB:} updated database content and new features},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {1083--1088},
year = {2013},
url = {https://doi.org/10.1093/nar/gks960},
doi = {10.1093/NAR/GKS960},
timestamp = {Mon, 26 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SharmanBPLMBDPSHN13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ShawRGL13,
author = {Timothy I. Shaw and
Zheng Ruan and
Travis C. Glenn and
Liang Liu},
title = {{STRAW:} Species TRee Analysis Web server},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {238--241},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt377},
doi = {10.1093/NAR/GKT377},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ShawRGL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ShawZ13,
author = {Timothy I. Shaw and
Ming Zhang},
title = {{HIV} N-linked glycosylation site analyzer and its further usage in
anchored alignment},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {454--458},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt472},
doi = {10.1093/NAR/GKT472},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ShawZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SigristCCCHBBX13,
author = {Christian J. A. Sigrist and
Edouard De Castro and
Lorenzo Cerutti and
B{\'{e}}atrice A. Cuche and
Nicolas Hulo and
Alan J. Bridge and
Lydie Bougueleret and
Ioannis Xenarios},
title = {New and continuing developments at {PROSITE}},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {344--347},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1067},
doi = {10.1093/NAR/GKS1067},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/SigristCCCHBBX13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SillitoeCDDFLLLSRYTO13,
author = {Ian Sillitoe and
Alison L. Cuff and
Benoit H. Dessailly and
Natalie L. Dawson and
Nicholas Furnham and
David A. Lee and
Jonathan G. Lees and
Tony E. Lewis and
Romain A. Studer and
Robert Rentzsch and
Corin Yeats and
Janet M. Thornton and
Christine A. Orengo},
title = {New functional families (FunFams) in {CATH} to improve the mapping
of conserved functional sites to 3D structures},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {490--498},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1211},
doi = {10.1093/NAR/GKS1211},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SillitoeCDDFLLLSRYTO13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Silva-RochaMCCAHPDKNPL13,
author = {Rafael Silva{-}Rocha and
Esteban Mart{\'{\i}}nez{-}Garc{\'{\i}}a and
Bel{\'{e}}n Calles and
Max Chavarr{\'{\i}}a and
Alejandro Arce{-}Rodr{\'{\i}}guez and
Aitor de las Heras and
A. David P{\'{a}}ez{-}Espino and
Gonzalo Durante{-}Rodr{\'{\i}}guez and
Juhyun Kim and
Pablo I. Nikel and
Ra{\'{u}}l Platero and
Victor de Lorenzo},
title = {The Standard European Vector Architecture {(SEVA):} a coherent platform
for the analysis and deployment of complex prokaryotic phenotypes},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {666--675},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1119},
doi = {10.1093/NAR/GKS1119},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Silva-RochaMCCAHPDKNPL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SimonettiTCNB13,
author = {Franco L. Simonetti and
Elin Teppa and
Ariel Chernomoretz and
Morten Nielsen and
Cristina Marino Buslje},
title = {{MISTIC:} mutual information server to infer coevolution},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {8--14},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt427},
doi = {10.1093/NAR/GKT427},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SimonettiTCNB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SnoekVALBEFHHPRSSXJKS13,
author = {L. Basten Snoek and
K. Joeri van der Velde and
Danny Arends and
Yang Li and
Antje Beyer and
Mark Elvin and
Jasmin Fisher and
Alex Hajnal and
Michael O. Hengartner and
Gino B. Poulin and
Miriam Rodriguez and
Tobias Schmid and
Sabine Schrimpf and
Feng Xue and
Ritsert C. Jansen and
Jan E. Kammenga and
Morris A. Swertz},
title = {WormQTL - public archive and analysis web portal for natural variation
data in \emph{Caenorhabditis} spp},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {738--743},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1124},
doi = {10.1093/NAR/GKS1124},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/SnoekVALBEFHHPRSSXJKS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SunkinNLDGTHD13,
author = {Susan Sunkin and
Lydia Ng and
Christopher Lau and
Tim Dolbeare and
Terri L. Gilbert and
Carol L. Thompson and
Michael Hawrylycz and
Chinh Dang},
title = {Allen Brain Atlas: an integrated spatio-temporal portal for exploring
the central nervous system},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {996--1008},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1042},
doi = {10.1093/NAR/GKS1042},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SunkinNLDGTHD13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/TacutuCBWLTCFM13,
author = {Robi Tacutu and
Thomas Craig and
Arie Budovsky and
Daniel Wuttke and
Gilad Lehmann and
Dmitri Taranukha and
Joana C{\'{o}}sta and
Vadim E. Fraifeld and
Jo{\~{a}}o Pedro de Magalh{\~{a}}es},
title = {Human Ageing Genomic Resources: Integrated databases and tools for
the biology and genetics of ageing},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {1027--1033},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1155},
doi = {10.1093/NAR/GKS1155},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/TacutuCBWLTCFM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/TakedaYMNSHOHGI13,
author = {Jun{-}ichi Takeda and
Chisato Yamasaki and
Katsuhiko Murakami and
Yoko Nagai and
Miho Sera and
Yuichiro Hara and
Nobuo Obi and
Takuya Habara and
Takashi Gojobori and
Tadashi Imanishi},
title = {H-InvDB in 2013: an omics study platform for human functional gene
and transcript discovery},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {915--919},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1245},
doi = {10.1093/NAR/GKS1245},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/TakedaYMNSHOHGI13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/TanNPVM13,
author = {Kuan Pern Tan and
Thanh Binh Nguyen and
Siddharth Patel and
Raghavan Varadarajan and
Mallur S. Madhusudhan},
title = {Depth: a web server to compute depth, cavity sizes, detect potential
small-molecule ligand-binding cavities and predict the pK\({}_{\mbox{a}}\)
of ionizable residues in proteins},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {314--321},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt503},
doi = {10.1093/NAR/GKT503},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/TanNPVM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/TangLCXWS13,
author = {Shengnan Tang and
Tonghua Li and
Peisheng Cong and
Wenwei Xiong and
Zhiheng Wang and
Jiangming Sun},
title = {PlantLoc: an accurate web server for predicting plant protein subcellular
localization by substantiality motif},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {441--447},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt428},
doi = {10.1093/NAR/GKT428},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/TangLCXWS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/TanzCHVSM13,
author = {Sandra K. Tanz and
Ian R. Castleden and
Cornelia M. Hooper and
Michael A. Vacher and
Ian Small and
A. Harvey Millar},
title = {{SUBA3:} a database for integrating experimentation and prediction
to define the SUBcellular location of proteins in Arabidopsis},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {1185--1191},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1151},
doi = {10.1093/NAR/GKS1151},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/TanzCHVSM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/UchiyamaMNC13,
author = {Ikuo Uchiyama and
Motohiro Mihara and
Hiroyo Nishide and
Hirokazu Chiba},
title = {{MBGD} update 2013: the microbial genome database for exploring the
diversity of microbial world},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {631--635},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1006},
doi = {10.1093/NAR/GKS1006},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/UchiyamaMNC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/VallenetBCCELFLMRRSSSWM13,
author = {David Vallenet and
Eugeni Belda and
Alexandra Calteau and
St{\'{e}}phane Cruveiller and
Stefan Engelen and
Aur{\'{e}}lie Lajus and
Fran{\c{c}}ois Le F{\`{e}}vre and
Cyrille Longin and
Damien Mornico and
David Roche and
Zo{\'{e}} Rouy and
Gregory Salvignol and
Claude Scarpelli and
Adam Alexander Thil Smith and
Marion Weiman and
Claudine M{\'{e}}digue},
title = {MicroScope - an integrated microbial resource for the curation and
comparative analysis of genomic and metabolic data},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {636--647},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1194},
doi = {10.1093/NAR/GKS1194},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/VallenetBCCELFLMRRSSSWM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/VarshneyHZLGYWLB13,
author = {Gaurav K. Varshney and
Haigen Huang and
Suiyuan Zhang and
Jing Lu and
Derek E. Gildea and
Zhongan Yang and
Tyra G. Wolfsberg and
Shuo Lin and
Shawn M. Burgess},
title = {The Zebrafish Insertion Collection (ZInC): a web based, searchable
collection of zebrafish mutations generated by {DNA} insertion},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {861--864},
year = {2013},
url = {https://doi.org/10.1093/nar/gks946},
doi = {10.1093/NAR/GKS946},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/VarshneyHZLGYWLB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/VassetzkyK13,
author = {Nikita S. Vassetzky and
Dmitri A. Kramerov},
title = {SINEBase: a database and tool for {SINE} analysis},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {83--89},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1263},
doi = {10.1093/NAR/GKS1263},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/VassetzkyK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/VejnarBZ13,
author = {Charles E. Vejnar and
Matthias Blum and
Evgeny M. Zdobnov},
title = {miRmap web: comprehensive microRNA target prediction online},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {165--168},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt430},
doi = {10.1093/NAR/GKT430},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/VejnarBZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/VelankarDJGGLOOMK13,
author = {Sameer Velankar and
Jose M. Dana and
Julius O. B. Jacobsen and
Glen van Ginkel and
Paul J. Gane and
Jie Luo and
Thomas J. Oldfield and
Claire O'Donovan and
Maria Jesus Martin and
Gerard J. Kleywegt},
title = {{SIFTS:} Structure Integration with Function, Taxonomy and Sequences
resource},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {483--489},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1258},
doi = {10.1093/NAR/GKS1258},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/VelankarDJGGLOOMK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/VizcainoCCDFFGABCOSOPRRWH13,
author = {Juan Antonio Vizca{\'{\i}}no and
Richard G. C{\^{o}}t{\'{e}} and
Attila Csordas and
Jos{\'{e}} A. Dianes and
Antonio Fabregat and
Joseph M. Foster and
Johannes Griss and
Emanuele Alpi and
Melih Birim and
Javier Contell and
Gavin O'Kelly and
Andreas Schoenegger and
David Ovelleiro and
Yasset P{\'{e}}rez{-}Riverol and
Florian Reisinger and
Daniel Rios and
Rui Wang and
Henning Hermjakob},
title = {The Proteomics Identifications {(PRIDE)} database and associated tools:
status in 2013},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {1063--1069},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1262},
doi = {10.1093/NAR/GKS1262},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/VizcainoCCDFFGABCOSOPRRWH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/VoldersHWMMGVM13,
author = {Pieter{-}Jan Volders and
Kenny Helsens and
Xiaowei Wang and
Bj{\"{o}}rn Menten and
Lennart Martens and
Kris Gevaert and
Jo Vandesompele and
Pieter Mestdagh},
title = {LNCipedia: a database for annotated human lncRNA transcript sequences
and structures},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {246--251},
year = {2013},
url = {https://doi.org/10.1093/nar/gks915},
doi = {10.1093/NAR/GKS915},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/VoldersHWMMGVM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WagihUBVKCMABP13,
author = {Omar Wagih and
Matej Usaj and
Anastasia Baryshnikova and
Benjamin VanderSluis and
Elena Kuzmin and
Michael Costanzo and
Chad L. Myers and
Brenda J. Andrews and
Charles Boone and
Leopold Parts},
title = {SGAtools: one-stop analysis and visualization of array-based genetic
interaction screens},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {591--596},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt400},
doi = {10.1093/NAR/GKT400},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WagihUBVKCMABP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WangDS013,
author = {Jing Wang and
Dexter T. Duncan and
Zhiao Shi and
Bing Zhang},
title = {WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {77--83},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt439},
doi = {10.1093/NAR/GKT439},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WangDS013.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WangXLHY13,
author = {Dapeng Wang and
Yan Xia and
Xinna Li and
Lixia Hou and
Jun Yu},
title = {The Rice Genome Knowledgebase (RGKbase): an annotation database for
rice comparative genomics and evolutionary biology},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {1199--1205},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1225},
doi = {10.1093/NAR/GKS1225},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/WangXLHY13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WangYLLTGKG13,
author = {Yi Wang and
Frank M. You and
Gerard R. Lazo and
Ming{-}Cheng Luo and
Roger Thilmony and
Sean Gordon and
Shahryar F. Kianian and
Yong Qiang Gu},
title = {{PIECE:} a database for plant gene structure comparison and evolution},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {1159--1166},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1109},
doi = {10.1093/NAR/GKS1109},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/WangYLLTGKG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WangZILGKMPDVBHW13,
author = {Jie Wang and
Jiali Zhuang and
Sowmya Iyer and
Xin{-}Ying Lin and
Melissa C. Greven and
Bong{-}Hyun Kim and
Jill Moore and
Brian G. Pierce and
Xianjun Dong and
Daniel Virgil and
Ewan Birney and
Jui{-}Hung Hung and
Zhiping Weng},
title = {Factorbook.org: a Wiki-based database for transcription factor-binding
data generated by the {ENCODE} consortium},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {171--176},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1221},
doi = {10.1093/NAR/GKS1221},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WangZILGKMPDVBHW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WaterhouseTLZK13,
author = {Robert M. Waterhouse and
Fredrik Tegenfeldt and
Jia Li and
Evgeny M. Zdobnov and
Evgenia V. Kriventseva},
title = {OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {358--365},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1116},
doi = {10.1093/NAR/GKS1116},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/WaterhouseTLZK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WeiKL13,
author = {Chih{-}Hsuan Wei and
Hung{-}Yu Kao and
Zhiyong Lu},
title = {PubTator: a web-based text mining tool for assisting biocuration},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {518--522},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt441},
doi = {10.1093/NAR/GKT441},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/WeiKL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WheelerCEHJJSF13,
author = {Travis J. Wheeler and
Jody Clements and
Sean R. Eddy and
Robert Hubley and
Thomas A. Jones and
Jerzy Jurka and
Arian F. A. Smit and
Robert D. Finn},
title = {Dfam: a database of repetitive {DNA} based on profile hidden Markov
models},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {70--82},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1265},
doi = {10.1093/NAR/GKS1265},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WheelerCEHJJSF13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WhitesideWLB13,
author = {Matthew D. Whiteside and
Geoffrey L. Winsor and
Matthew R. Laird and
Fiona S. L. Brinkman},
title = {OrtholugeDB: a bacterial and archaeal orthology resource for improved
comparative genomic analysis},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {366--376},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1241},
doi = {10.1093/NAR/GKS1241},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WhitesideWLB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WingenderSD13,
author = {Edgar Wingender and
Torsten Schoeps and
J{\"{u}}rgen D{\"{o}}nitz},
title = {TFClass: an expandable hierarchical classification of human transcription
factors},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {165--170},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1123},
doi = {10.1093/NAR/GKS1123},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WingenderSD13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WirthZMS13,
author = {Matthias Wirth and
Vincent Zoete and
Olivier Michielin and
Wolfgang H. B. Sauer},
title = {SwissBioisostere: a database of molecular replacements for ligand
design},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {1137--1143},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1059},
doi = {10.1093/NAR/GKS1059},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WirthZMS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WishartJGWKLDMADBSAXLYBPEANGS13,
author = {David S. Wishart and
Timothy Jewison and
Anchi Guo and
Michael Wilson and
Craig Knox and
Yifeng Liu and
Yannick Djoumbou and
Rupasri Mandal and
Farid Aziat and
Edison Dong and
Souhaila Bouatra and
Igor Sinelnikov and
David Arndt and
Jianguo Xia and
Philip Liu and
Faizath Yallou and
Trent C. Bjorndahl and
Rolando Perez{-}Pineiro and
Roman Eisner and
Felicity Allen and
Vanessa Neveu and
Russell Greiner and
Augustin Scalbert},
title = {{HMDB} 3.0 - The Human Metabolome Database in 2013},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {801--807},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1065},
doi = {10.1093/NAR/GKS1065},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/WishartJGWKLDMADBSAXLYBPEANGS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WolstencroftHFWWOSDNFBBBHHVSG13,
author = {Katherine Wolstencroft and
Robert Haines and
Donal Fellows and
Alan R. Williams and
David Withers and
Stuart Owen and
Stian Soiland{-}Reyes and
Ian Dunlop and
Aleksandra Nenadic and
Paul Fisher and
Jiten Bhagat and
Khalid Belhajjame and
Finn Bacall and
Alex R. Hardisty and
Abraham Nieva de la Hidalga and
Maria P. Balcazar Vargas and
Shoaib Sufi and
Carole A. Goble},
title = {The Taverna workflow suite: designing and executing workflows of Web
Services on the desktop, web or in the cloud},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {557--561},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt328},
doi = {10.1093/NAR/GKT328},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/WolstencroftHFWWOSDNFBBBHHVSG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WongVNSBHS13,
author = {Christopher K. Wong and
Charles J. Vaske and
Sam Ng and
J. Zachary Sanborn and
Stephen C. Benz and
David Haussler and
Joshua M. Stuart},
title = {The {UCSC} Interaction Browser: multidimensional data views in pathway
context},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {218--224},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt473},
doi = {10.1093/NAR/GKT473},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/WongVNSBHS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WoollettWJW13,
author = {Benjamin Woollett and
Lee Whitmore and
Robert W. Janes and
B. A. Wallace},
title = {ValiDichro: a website for validating and quality control of protein
circular dichroism spectra},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {417--421},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt287},
doi = {10.1093/NAR/GKT287},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WoollettWJW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WuMS13,
author = {Chunlei Wu and
Ian MacLeod and
Andrew I. Su},
title = {BioGPS and MyGene.info: organizing online, gene-centric information},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {561--565},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1114},
doi = {10.1093/NAR/GKS1114},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WuMS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WynendaeleBNDSBVWTS13,
author = {Evelien Wynendaele and
Antoon Bronselaer and
Joachim Nielandt and
Matthias D'Hondt and
Sofie Stalmans and
Nathalie Bracke and
Frederick Verbeke and
Christophe Van De Wiele and
Guy De Tr{\'{e}} and
Bart De Spiegeleer},
title = {Quorumpeps database: chemical space, microbial origin and functionality
of quorum sensing peptides},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {655--659},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1137},
doi = {10.1093/NAR/GKS1137},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WynendaeleBNDSBVWTS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/X13,
title = {Database resources of the National Center for Biotechnology Information},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {8--20},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1189},
doi = {10.1093/NAR/GKS1189},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/X13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/X13a,
title = {Update on activities at the Universal Protein Resource (UniProt) in
2013},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {43--47},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1068},
doi = {10.1093/NAR/GKS1068},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/X13a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/X13b,
title = {Gene Ontology Annotations and Resources},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {530--535},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1050},
doi = {10.1093/NAR/GKS1050},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/X13b.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/XiaFMPWH13,
author = {Jianguo Xia and
Christopher D. Fjell and
Matthew L. Mayer and
Olga M. Pena and
David S. Wishart and
Robert E. W. Hancock},
title = {{INMEX} - a web-based tool for integrative meta-analysis of expression
data},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {63--70},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt338},
doi = {10.1093/NAR/GKT338},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/XiaFMPWH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/XiaoWYHWZKGZLZ13,
author = {An Xiao and
Yingdan Wu and
Zhipeng Yang and
Yingying Hu and
Weiye Wang and
Yutian Zhang and
Lei Kong and
Ge Gao and
Zuoyan Zhu and
Shuo Lin and
Bo Zhang},
title = {EENdb: a database and knowledge base of ZFNs and TALENs for endonuclease
engineering},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {415--422},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1144},
doi = {10.1093/NAR/GKS1144},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/XiaoWYHWZKGZLZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/XieLHYH13,
author = {Zhong{-}Ru Xie and
Chuan{-}Kun Liu and
Fang{-}Chih Hsiao and
Adam Yao and
Ming{-}Jing Hwang},
title = {{LISE:} a server using ligand-interacting and site-enriched protein
triangles for prediction of ligand-binding sites},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {292--296},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt300},
doi = {10.1093/NAR/GKT300},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/XieLHYH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/XueFZYWS13,
author = {Ruichao Xue and
Zhao Fang and
Meixia Zhang and
Zhenghui Yi and
Chengping Wen and
Tieliu Shi},
title = {{TCMID:} traditional Chinese medicine integrative database for herb
molecular mechanism analysis},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {1089--1095},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1100},
doi = {10.1093/NAR/GKS1100},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/XueFZYWS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/YangLJZQ13,
author = {Jian{-}Hua Yang and
Jun{-}Hao Li and
Shan Jiang and
Hui Zhou and
Liang{-}Hu Qu},
title = {ChIPBase: a database for decoding the transcriptional regulation of
long non-coding {RNA} and microRNA genes from ChIP-Seq data},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {177--187},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1060},
doi = {10.1093/NAR/GKS1060},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/YangLJZQ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/YangRZ13,
author = {Jianyi Yang and
Ambrish Roy and
Yang Zhang},
title = {BioLiP: a semi-manually curated database for biologically relevant
ligand-protein interactions},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {1096--1103},
year = {2013},
url = {https://doi.org/10.1093/nar/gks966},
doi = {10.1093/NAR/GKS966},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/YangRZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/YangSGELFBBSTRFHSBMG13,
author = {Wanjuan Yang and
Jorge Soares and
Patricia Greninger and
Elena J. Edelman and
Howard Lightfoot and
Simon A. Forbes and
Nidhi Bindal and
David Beare and
James A. Smith and
I. Richard Thompson and
Sridhar Ramaswamy and
P. Andrew Futreal and
Daniel A. Haber and
Michael R. Stratton and
Cyril Benes and
Ultan McDermott and
Mathew Garnett},
title = {Genomics of Drug Sensitivity in Cancer {(GDSC):} a resource for therapeutic
biomarker discovery in cancer cells},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {955--961},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1111},
doi = {10.1093/NAR/GKS1111},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/YangSGELFBBSTRFHSBMG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/YeMMO13,
author = {Jian Ye and
Ning Ma and
Thomas L. Madden and
James M. Ostell},
title = {IgBLAST: an immunoglobulin variable domain sequence analysis tool},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {34--40},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt382},
doi = {10.1093/NAR/GKT382},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/YeMMO13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/YiDS13,
author = {Xin Yi and
Zhou Du and
Zhen Su},
title = {PlantGSEA: a gene set enrichment analysis toolkit for plant community},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {98--103},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt281},
doi = {10.1093/NAR/GKT281},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/YiDS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZambelliPP13,
author = {Federico Zambelli and
Graziano Pesole and
Giulio Pavesi},
title = {PscanChIP: finding over-represented transcription factor-binding site
motifs and their correlations in sequences from ChIP-Seq experiments},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {535--543},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt448},
doi = {10.1093/NAR/GKT448},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ZambelliPP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZerlotiniAYXLYGPBRKO13,
author = {Adhemar Zerlotini and
Eric R. G. R. Aguiar and
Fudong Yu and
Huayong Xu and
Yixue Li and
Neil D. Young and
Robin B. Gasser and
Anna V. Protasio and
Matthew Berriman and
David S. Roos and
Jessica C. Kissinger and
Guilherme C. Oliveira},
title = {SchistoDB: an updated genome resource for the three key schistosomes
of humans},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {728--731},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1087},
doi = {10.1093/NAR/GKS1087},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ZerlotiniAYXLYGPBRKO13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZhanR13,
author = {Shuai Zhan and
Steven M. Reppert},
title = {MonarchBase: the monarch butterfly genome database},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {758--763},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1057},
doi = {10.1093/NAR/GKS1057},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ZhanR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZhangLSKCZZYWYHYZXZL13,
author = {Shi{-}Jian Zhang and
Chu{-}Jun Liu and
Mingming Shi and
Lei Kong and
Jia{-}Yu Chen and
Wei{-}Zhen Zhou and
Xiaotong Zhu and
Peng Yu and
Jue Wang and
Xinzhuang Yang and
Ning Hou and
Zhi{-}Qiang Ye and
Rongli Zhang and
Ruiping Xiao and
Xiuqin Zhang and
Chuan{-}Yun Li},
title = {RhesusBase: a knowledgebase for the monkey research community},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {892--905},
year = {2013},
url = {https://doi.org/10.1093/nar/gks835},
doi = {10.1093/NAR/GKS835},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ZhangLSKCZZYWYHYZXZL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZhangPBLW13,
author = {Yang Zhang and
Yann Ponty and
Mathieu Blanchette and
Eric L{\'{e}}cuyer and
J{\'{e}}r{\^{o}}me Waldisp{\"{u}}hl},
title = {{SPARCS:} a web server to analyze (un)structured regions in coding
{RNA} sequences},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {480--485},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt461},
doi = {10.1093/NAR/GKT461},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ZhangPBLW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZhangPGDH13,
author = {Qiangfeng Cliff Zhang and
Donald Petrey and
Jos{\'{e}} Ignacio Garz{\'{o}}n and
Lei Deng and
Barry Honig},
title = {PrePPI: a structure-informed database of protein-protein interactions},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {828--833},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1231},
doi = {10.1093/NAR/GKS1231},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ZhangPGDH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZhangZXYBZCHS13,
author = {Yuanwei Zhang and
Liangwen Zhong and
Bo Xu and
Yifan Yang and
Rongjun Ban and
Jun Zhu and
Howard J. Cooke and
QiaoMei Hao and
Qinghua Shi},
title = {SpermatogenesisOnline 1.0: a resource for spermatogenesis based on
manual literature curation and genome-wide data mining},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {1055--1062},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1186},
doi = {10.1093/NAR/GKS1186},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ZhangZXYBZCHS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZhaoSZ13,
author = {Min Zhao and
Jingchun Sun and
Zhongming Zhao},
title = {TSGene: a web resource for tumor suppressor genes},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {970--976},
year = {2013},
url = {https://doi.org/10.1093/nar/gks937},
doi = {10.1093/NAR/GKS937},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ZhaoSZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZhouR13,
author = {Jindan Zhou and
Kenneth E. Rudd},
title = {EcoGene 3.0},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {613--624},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1235},
doi = {10.1093/NAR/GKS1235},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ZhouR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZhouYLDMGFR13,
author = {Tianyin Zhou and
Lin Yang and
Yan Lu and
Iris Dror and
Ana Carolina Dantas Machado and
Tahereh Ghane and
Rosa Di Felice and
Remo Rohs},
title = {DNAshape: a method for the high-throughput prediction of {DNA} structural
features on a genomic scale},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {56--62},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt437},
doi = {10.1093/NAR/GKT437},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ZhouYLDMGFR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZiebarthBC13,
author = {Jesse D. Ziebarth and
Anindya Bhattacharya and
Yan Cui},
title = {{CTCFBSDB} 2.0: a database for CTCF-binding sites and genome organization},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {188--194},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1165},
doi = {10.1093/NAR/GKS1165},
timestamp = {Mon, 25 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/ZiebarthBC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZuberiFRMLBM13,
author = {Khalid Zuberi and
Max Franz and
Harold Rodriguez and
Jason Montojo and
Christian Tannus Lopes and
Gary D. Bader and
Quaid Morris},
title = {GeneMANIA Prediction Server 2013 Update},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {115--122},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt533},
doi = {10.1093/NAR/GKT533},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/ZuberiFRMLBM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZulawskiBS13,
author = {Monika Zulawski and
Rostyslav Braginets and
Waltraud X. Schulze},
title = {PhosPhAt goes kinases - searchable protein kinase target information
in the plant phosphorylation site database PhosPhAt},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {1176--1184},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1081},
doi = {10.1093/NAR/GKS1081},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ZulawskiBS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/del-ToroDOJGLGBOSH13,
author = {Noemi del{-}Toro and
Marine Dumousseau and
Sandra E. Orchard and
Rafael C. Jim{\'{e}}nez and
Eugenia Galeota and
Guillaume Launay and
Johannes Goll and
Karin Breuer and
Keiichiro Ono and
Lukasz Salw{\'{\i}}nski and
Henning Hermjakob},
title = {A new reference implementation of the {PSICQUIC} web service},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {601--606},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt392},
doi = {10.1093/NAR/GKT392},
timestamp = {Thu, 25 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/del-ToroDOJGLGBOSH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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