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@article{DBLP:journals/bmcsb/AlaimoBCFGP15, author = {Salvatore Alaimo and Vincenzo Bonnici and Damiano Cancemi and Alfredo Ferro and Rosalba Giugno and Alfredo Pulvirenti}, title = {DT-Web: a web-based application for drug-target interaction and drug combination prediction through domain-tuned network-based inference}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-3}}, pages = {S4}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S3-S4}, doi = {10.1186/1752-0509-9-S3-S4}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/AlaimoBCFGP15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/CaiLHGKW15, author = {Hong Cai and Timothy G. Lilburn and Changjin Hong and Jianying Gu and Rui Kuang and Yufeng Wang}, title = {Predicting and exploring network components involved in pathogenesis in the malaria parasite via novel subnetwork alignments}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-4}}, pages = {S1}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S4-S1}, doi = {10.1186/1752-0509-9-S4-S1}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/CaiLHGKW15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChiarugiFHOT15, author = {Davide Chiarugi and Moreno Falaschi and Diana Hermith and Carlos Olarte and Luca Torella}, title = {Modelling non-Markovian dynamics in biochemical reactions}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-3}}, pages = {S8}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S3-S8}, doi = {10.1186/1752-0509-9-S3-S8}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChiarugiFHOT15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/DanzigerRRSPAB15, author = {Samuel A. Danziger and David J. Reiss and Alexander V. Ratushny and Jennifer J. Smith and Christopher L. Plaisier and John D. Aitchison and Nitin S. Baliga}, title = {Bicluster Sampled Coherence Metric {(BSCM)} provides an accurate environmental context for phenotype predictions}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-2}}, pages = {S1}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S2-S1}, doi = {10.1186/1752-0509-9-S2-S1}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/DanzigerRRSPAB15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/FornariBHBACCB15, author = {Chiara Fornari and Gianfranco Balbo and Sami M. Halawani and Omar M. Ba{-}Rukab and Ab Rahman Ahmad and Raffaele A. Calogero and Francesca Cordero and Marco Beccuti}, title = {A versatile mathematical work-flow to explore how Cancer Stem Cell fate influences tumor progression}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-3}}, pages = {S1}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S3-S1}, doi = {10.1186/1752-0509-9-S3-S1}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/FornariBHBACCB15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GaleotaGCBC15, author = {Eugenia Galeota and Caius Gavrila and Filippo Castiglione and Massimo Bernaschi and Gianni Cesareni}, title = {The hierarchical organization of natural protein interaction networks confers self-organization properties on pseudocells}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-3}}, pages = {S3}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S3-S3}, doi = {10.1186/1752-0509-9-S3-S3}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GaleotaGCBC15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GlotovTVPDSIAMZ15, author = {Andrey S. Glotov and Evgeny S. Tiys and Elena S. Vashukova and Vladimir S. Pakin and Pavel S. Demenkov and Olga V. Saik and Timofey V. Ivanisenko and Olga N. Arzhanova and Elena V. Mozgovaya and Marina S. Zainulina and Nikolay A. Kolchanov and Vladislav S. Baranov and Vladimir A. Ivanisenko}, title = {Molecular association of pathogenetic contributors to pre-eclampsia (pre-eclampsia associome)}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-2}}, pages = {S4}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S2-S4}, doi = {10.1186/1752-0509-9-S2-S4}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GlotovTVPDSIAMZ15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HsiehTCTKHN15, author = {Wen{-}Tsong Hsieh and Ke{-}Rung Tzeng and Jin{-}Shuei Ciou and Jeffrey J. P. Tsai and Nilubon Kurubanjerdjit and Chien{-}Hung Huang and Ka{-}Lok Ng}, title = {Transcription factor and microRNA-regulated network motifs for cancer and signal transduction networks}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-1}}, pages = {S5}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S1-S5}, doi = {10.1186/1752-0509-9-S1-S5}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HsiehTCTKHN15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HuangSZZXS15, author = {Liang{-}Chin Huang and Ergin Soysal and W. Jim Zheng and Zhongming Zhao and Hua Xu and Jingchun Sun}, title = {A weighted and integrated drug-target interactome: drug repurposing for schizophrenia as a use case}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-4}}, pages = {S2}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S4-S2}, doi = {10.1186/1752-0509-9-S4-S2}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HuangSZZXS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/IvanisenkoSITID15, author = {Vladimir A. Ivanisenko and Olga V. Saik and Nikita V. Ivanisenko and Evgeny S. Tiys and Timofey V. Ivanisenko and Pavel S. Demenkov and Nikolay A. Kolchanov}, title = {ANDSystem: an Associative Network Discovery System for automated literature mining in the field of biology}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-2}}, pages = {S2}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S2-S2}, doi = {10.1186/1752-0509-9-S2-S2}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/IvanisenkoSITID15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/JeongKWS15, author = {Hyun{-}hwan Jeong and So Kim and Kyubum Wee and Kyung{-}Ah Sohn}, title = {Investigating the utility of clinical outcome-guided mutual information network in network-based Cox regression}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-1}}, pages = {S8}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S1-S8}, doi = {10.1186/1752-0509-9-S1-S8}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/JeongKWS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/JeongY15, author = {Hyundoo Jeong and Byung{-}Jun Yoon}, title = {Accurate multiple network alignment through context-sensitive random walk}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-1}}, pages = {S7}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S1-S7}, doi = {10.1186/1752-0509-9-S1-S7}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/JeongY15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ManyamBB15, author = {Ganiraju Manyam and Aybike Birerdinc and Ancha V. Baranova}, title = {{KPP:} {KEGG} Pathway Painter}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-2}}, pages = {S3}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S2-S3}, doi = {10.1186/1752-0509-9-S2-S3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ManyamBB15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MishraBCZZ15, author = {Shital K. Mishra and Sourav S. Bhowmick and Huey{-}Eng Chua and Fan Zhang and Jie Zheng}, title = {Computational cell fate modelling for discovery of rewiring in apoptotic network for enhanced cancer drug sensitivity}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-1}}, pages = {S4}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S1-S4}, doi = {10.1186/1752-0509-9-S1-S4}, timestamp = {Wed, 30 Nov 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/MishraBCZZ15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ParadisiAC15, author = {Paolo Paradisi and Paolo Allegrini and Davide Chiarugi}, title = {A renewal model for the emergence of anomalous solute crowding in liposomes}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-3}}, pages = {S7}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S3-S7}, doi = {10.1186/1752-0509-9-S3-S7}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ParadisiAC15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PolitiPZM15, author = {Nicol{\`{o}} Politi and Lorenzo Pasotti and Susanna Zucca and Paolo Magni}, title = {Modelling the effects of cell-to-cell variability on the output of interconnected gene networks in bacterial populations}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-3}}, pages = {S6}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S3-S6}, doi = {10.1186/1752-0509-9-S3-S6}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PolitiPZM15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PulvirentiGDPMG15, author = {Alfredo Pulvirenti and Rosalba Giugno and Rosario Distefano and Giuseppe Pigola and Misael Mongiov{\`{\i}} and Girolamo Giudice and Vera Vendramin and Alessandro Lombardo and Federica Cattonaro and Alfredo Ferro}, title = {A knowledge base for Vitis vinifera functional analysis}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-3}}, pages = {S5}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S3-S5}, doi = {10.1186/1752-0509-9-S3-S5}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PulvirentiGDPMG15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ShimodaSOIA15, author = {Takehiro Shimoda and Shuji Suzuki and Masahito Ohue and Takashi Ishida and Yutaka Akiyama}, title = {Protein-protein docking on hardware accelerators: comparison of {GPU} and {MIC} architectures}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-1}}, pages = {S6}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S1-S6}, doi = {10.1186/1752-0509-9-S1-S6}, timestamp = {Mon, 21 Mar 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/ShimodaSOIA15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SinCV15, author = {Celine Sin and Davide Chiarugi and Angelo Valleriani}, title = {Single-molecule modeling of mRNA degradation by miRNA: Lessons from data}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-3}}, pages = {S2}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S3-S2}, doi = {10.1186/1752-0509-9-S3-S2}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/SinCV15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WangLLDH15, author = {Caihua Wang and Juan Liu and Fei Luo and Zixing Deng and Qian{-}Nan Hu}, title = {Predicting target-ligand interactions using protein ligand-binding site and ligand substructures}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-1}}, pages = {S2}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S1-S2}, doi = {10.1186/1752-0509-9-S1-S2}, timestamp = {Tue, 21 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WangLLDH15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WangYPLJMY15, author = {Likun Wang and Luhe Yang and Zuohan Peng and Dan Lu and Yan Jin and Michael McNutt and Yuxin Yin}, title = {cisPath: an R/Bioconductor package for cloud users for visualization and management of functional protein interaction networks}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-1}}, pages = {S1}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S1-S1}, doi = {10.1186/1752-0509-9-S1-S1}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WangYPLJMY15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WuWLYLS15, author = {Qingyao Wu and Zhenyu Wang and Chunshan Li and Yunming Ye and Yueping Li and Ning Sun}, title = {Protein functional properties prediction in sparsely-label {PPI} networks through regularized non-negative matrix factorization}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-1}}, pages = {S9}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S1-S9}, doi = {10.1186/1752-0509-9-S1-S9}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WuWLYLS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YuZDG15, author = {Guo{-}Xian Yu and Hailong Zhu and Carlotta Domeniconi and Maozu Guo}, title = {Integrating multiple networks for protein function prediction}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-1}}, pages = {S3}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S1-S3}, doi = {10.1186/1752-0509-9-S1-S3}, timestamp = {Thu, 12 Nov 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/YuZDG15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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