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@article{DBLP:journals/bmcsb/AlaimoBCFGP15,
  author       = {Salvatore Alaimo and
                  Vincenzo Bonnici and
                  Damiano Cancemi and
                  Alfredo Ferro and
                  Rosalba Giugno and
                  Alfredo Pulvirenti},
  title        = {DT-Web: a web-based application for drug-target interaction and drug
                  combination prediction through domain-tuned network-based inference},
  journal      = {{BMC} Syst. Biol.},
  volume       = {9},
  number       = {{S-3}},
  pages        = {S4},
  year         = {2015},
  url          = {https://doi.org/10.1186/1752-0509-9-S3-S4},
  doi          = {10.1186/1752-0509-9-S3-S4},
  timestamp    = {Tue, 05 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcsb/AlaimoBCFGP15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CaiLHGKW15,
  author       = {Hong Cai and
                  Timothy G. Lilburn and
                  Changjin Hong and
                  Jianying Gu and
                  Rui Kuang and
                  Yufeng Wang},
  title        = {Predicting and exploring network components involved in pathogenesis
                  in the malaria parasite via novel subnetwork alignments},
  journal      = {{BMC} Syst. Biol.},
  volume       = {9},
  number       = {{S-4}},
  pages        = {S1},
  year         = {2015},
  url          = {https://doi.org/10.1186/1752-0509-9-S4-S1},
  doi          = {10.1186/1752-0509-9-S4-S1},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcsb/CaiLHGKW15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChiarugiFHOT15,
  author       = {Davide Chiarugi and
                  Moreno Falaschi and
                  Diana Hermith and
                  Carlos Olarte and
                  Luca Torella},
  title        = {Modelling non-Markovian dynamics in biochemical reactions},
  journal      = {{BMC} Syst. Biol.},
  volume       = {9},
  number       = {{S-3}},
  pages        = {S8},
  year         = {2015},
  url          = {https://doi.org/10.1186/1752-0509-9-S3-S8},
  doi          = {10.1186/1752-0509-9-S3-S8},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcsb/ChiarugiFHOT15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DanzigerRRSPAB15,
  author       = {Samuel A. Danziger and
                  David J. Reiss and
                  Alexander V. Ratushny and
                  Jennifer J. Smith and
                  Christopher L. Plaisier and
                  John D. Aitchison and
                  Nitin S. Baliga},
  title        = {Bicluster Sampled Coherence Metric {(BSCM)} provides an accurate environmental
                  context for phenotype predictions},
  journal      = {{BMC} Syst. Biol.},
  volume       = {9},
  number       = {{S-2}},
  pages        = {S1},
  year         = {2015},
  url          = {https://doi.org/10.1186/1752-0509-9-S2-S1},
  doi          = {10.1186/1752-0509-9-S2-S1},
  timestamp    = {Tue, 05 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcsb/DanzigerRRSPAB15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FornariBHBACCB15,
  author       = {Chiara Fornari and
                  Gianfranco Balbo and
                  Sami M. Halawani and
                  Omar M. Ba{-}Rukab and
                  Ab Rahman Ahmad and
                  Raffaele A. Calogero and
                  Francesca Cordero and
                  Marco Beccuti},
  title        = {A versatile mathematical work-flow to explore how Cancer Stem Cell
                  fate influences tumor progression},
  journal      = {{BMC} Syst. Biol.},
  volume       = {9},
  number       = {{S-3}},
  pages        = {S1},
  year         = {2015},
  url          = {https://doi.org/10.1186/1752-0509-9-S3-S1},
  doi          = {10.1186/1752-0509-9-S3-S1},
  timestamp    = {Tue, 05 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcsb/FornariBHBACCB15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GaleotaGCBC15,
  author       = {Eugenia Galeota and
                  Caius Gavrila and
                  Filippo Castiglione and
                  Massimo Bernaschi and
                  Gianni Cesareni},
  title        = {The hierarchical organization of natural protein interaction networks
                  confers self-organization properties on pseudocells},
  journal      = {{BMC} Syst. Biol.},
  volume       = {9},
  number       = {{S-3}},
  pages        = {S3},
  year         = {2015},
  url          = {https://doi.org/10.1186/1752-0509-9-S3-S3},
  doi          = {10.1186/1752-0509-9-S3-S3},
  timestamp    = {Sat, 09 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcsb/GaleotaGCBC15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GlotovTVPDSIAMZ15,
  author       = {Andrey S. Glotov and
                  Evgeny S. Tiys and
                  Elena S. Vashukova and
                  Vladimir S. Pakin and
                  Pavel S. Demenkov and
                  Olga V. Saik and
                  Timofey V. Ivanisenko and
                  Olga N. Arzhanova and
                  Elena V. Mozgovaya and
                  Marina S. Zainulina and
                  Nikolay A. Kolchanov and
                  Vladislav S. Baranov and
                  Vladimir A. Ivanisenko},
  title        = {Molecular association of pathogenetic contributors to pre-eclampsia
                  (pre-eclampsia associome)},
  journal      = {{BMC} Syst. Biol.},
  volume       = {9},
  number       = {{S-2}},
  pages        = {S4},
  year         = {2015},
  url          = {https://doi.org/10.1186/1752-0509-9-S2-S4},
  doi          = {10.1186/1752-0509-9-S2-S4},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcsb/GlotovTVPDSIAMZ15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HsiehTCTKHN15,
  author       = {Wen{-}Tsong Hsieh and
                  Ke{-}Rung Tzeng and
                  Jin{-}Shuei Ciou and
                  Jeffrey J. P. Tsai and
                  Nilubon Kurubanjerdjit and
                  Chien{-}Hung Huang and
                  Ka{-}Lok Ng},
  title        = {Transcription factor and microRNA-regulated network motifs for cancer
                  and signal transduction networks},
  journal      = {{BMC} Syst. Biol.},
  volume       = {9},
  number       = {{S-1}},
  pages        = {S5},
  year         = {2015},
  url          = {https://doi.org/10.1186/1752-0509-9-S1-S5},
  doi          = {10.1186/1752-0509-9-S1-S5},
  timestamp    = {Tue, 05 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcsb/HsiehTCTKHN15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HuangSZZXS15,
  author       = {Liang{-}Chin Huang and
                  Ergin Soysal and
                  W. Jim Zheng and
                  Zhongming Zhao and
                  Hua Xu and
                  Jingchun Sun},
  title        = {A weighted and integrated drug-target interactome: drug repurposing
                  for schizophrenia as a use case},
  journal      = {{BMC} Syst. Biol.},
  volume       = {9},
  number       = {{S-4}},
  pages        = {S2},
  year         = {2015},
  url          = {https://doi.org/10.1186/1752-0509-9-S4-S2},
  doi          = {10.1186/1752-0509-9-S4-S2},
  timestamp    = {Tue, 05 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcsb/HuangSZZXS15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/IvanisenkoSITID15,
  author       = {Vladimir A. Ivanisenko and
                  Olga V. Saik and
                  Nikita V. Ivanisenko and
                  Evgeny S. Tiys and
                  Timofey V. Ivanisenko and
                  Pavel S. Demenkov and
                  Nikolay A. Kolchanov},
  title        = {ANDSystem: an Associative Network Discovery System for automated literature
                  mining in the field of biology},
  journal      = {{BMC} Syst. Biol.},
  volume       = {9},
  number       = {{S-2}},
  pages        = {S2},
  year         = {2015},
  url          = {https://doi.org/10.1186/1752-0509-9-S2-S2},
  doi          = {10.1186/1752-0509-9-S2-S2},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcsb/IvanisenkoSITID15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JeongKWS15,
  author       = {Hyun{-}hwan Jeong and
                  So Kim and
                  Kyubum Wee and
                  Kyung{-}Ah Sohn},
  title        = {Investigating the utility of clinical outcome-guided mutual information
                  network in network-based Cox regression},
  journal      = {{BMC} Syst. Biol.},
  volume       = {9},
  number       = {{S-1}},
  pages        = {S8},
  year         = {2015},
  url          = {https://doi.org/10.1186/1752-0509-9-S1-S8},
  doi          = {10.1186/1752-0509-9-S1-S8},
  timestamp    = {Tue, 05 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcsb/JeongKWS15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JeongY15,
  author       = {Hyundoo Jeong and
                  Byung{-}Jun Yoon},
  title        = {Accurate multiple network alignment through context-sensitive random
                  walk},
  journal      = {{BMC} Syst. Biol.},
  volume       = {9},
  number       = {{S-1}},
  pages        = {S7},
  year         = {2015},
  url          = {https://doi.org/10.1186/1752-0509-9-S1-S7},
  doi          = {10.1186/1752-0509-9-S1-S7},
  timestamp    = {Tue, 05 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcsb/JeongY15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ManyamBB15,
  author       = {Ganiraju Manyam and
                  Aybike Birerdinc and
                  Ancha V. Baranova},
  title        = {{KPP:} {KEGG} Pathway Painter},
  journal      = {{BMC} Syst. Biol.},
  volume       = {9},
  number       = {{S-2}},
  pages        = {S3},
  year         = {2015},
  url          = {https://doi.org/10.1186/1752-0509-9-S2-S3},
  doi          = {10.1186/1752-0509-9-S2-S3},
  timestamp    = {Tue, 05 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcsb/ManyamBB15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MishraBCZZ15,
  author       = {Shital K. Mishra and
                  Sourav S. Bhowmick and
                  Huey{-}Eng Chua and
                  Fan Zhang and
                  Jie Zheng},
  title        = {Computational cell fate modelling for discovery of rewiring in apoptotic
                  network for enhanced cancer drug sensitivity},
  journal      = {{BMC} Syst. Biol.},
  volume       = {9},
  number       = {{S-1}},
  pages        = {S4},
  year         = {2015},
  url          = {https://doi.org/10.1186/1752-0509-9-S1-S4},
  doi          = {10.1186/1752-0509-9-S1-S4},
  timestamp    = {Wed, 30 Nov 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcsb/MishraBCZZ15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ParadisiAC15,
  author       = {Paolo Paradisi and
                  Paolo Allegrini and
                  Davide Chiarugi},
  title        = {A renewal model for the emergence of anomalous solute crowding in
                  liposomes},
  journal      = {{BMC} Syst. Biol.},
  volume       = {9},
  number       = {{S-3}},
  pages        = {S7},
  year         = {2015},
  url          = {https://doi.org/10.1186/1752-0509-9-S3-S7},
  doi          = {10.1186/1752-0509-9-S3-S7},
  timestamp    = {Tue, 05 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcsb/ParadisiAC15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PolitiPZM15,
  author       = {Nicol{\`{o}} Politi and
                  Lorenzo Pasotti and
                  Susanna Zucca and
                  Paolo Magni},
  title        = {Modelling the effects of cell-to-cell variability on the output of
                  interconnected gene networks in bacterial populations},
  journal      = {{BMC} Syst. Biol.},
  volume       = {9},
  number       = {{S-3}},
  pages        = {S6},
  year         = {2015},
  url          = {https://doi.org/10.1186/1752-0509-9-S3-S6},
  doi          = {10.1186/1752-0509-9-S3-S6},
  timestamp    = {Sat, 09 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcsb/PolitiPZM15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PulvirentiGDPMG15,
  author       = {Alfredo Pulvirenti and
                  Rosalba Giugno and
                  Rosario Distefano and
                  Giuseppe Pigola and
                  Misael Mongiov{\`{\i}} and
                  Girolamo Giudice and
                  Vera Vendramin and
                  Alessandro Lombardo and
                  Federica Cattonaro and
                  Alfredo Ferro},
  title        = {A knowledge base for Vitis vinifera functional analysis},
  journal      = {{BMC} Syst. Biol.},
  volume       = {9},
  number       = {{S-3}},
  pages        = {S5},
  year         = {2015},
  url          = {https://doi.org/10.1186/1752-0509-9-S3-S5},
  doi          = {10.1186/1752-0509-9-S3-S5},
  timestamp    = {Tue, 05 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcsb/PulvirentiGDPMG15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ShimodaSOIA15,
  author       = {Takehiro Shimoda and
                  Shuji Suzuki and
                  Masahito Ohue and
                  Takashi Ishida and
                  Yutaka Akiyama},
  title        = {Protein-protein docking on hardware accelerators: comparison of {GPU}
                  and {MIC} architectures},
  journal      = {{BMC} Syst. Biol.},
  volume       = {9},
  number       = {{S-1}},
  pages        = {S6},
  year         = {2015},
  url          = {https://doi.org/10.1186/1752-0509-9-S1-S6},
  doi          = {10.1186/1752-0509-9-S1-S6},
  timestamp    = {Mon, 21 Mar 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcsb/ShimodaSOIA15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SinCV15,
  author       = {Celine Sin and
                  Davide Chiarugi and
                  Angelo Valleriani},
  title        = {Single-molecule modeling of mRNA degradation by miRNA: Lessons from
                  data},
  journal      = {{BMC} Syst. Biol.},
  volume       = {9},
  number       = {{S-3}},
  pages        = {S2},
  year         = {2015},
  url          = {https://doi.org/10.1186/1752-0509-9-S3-S2},
  doi          = {10.1186/1752-0509-9-S3-S2},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcsb/SinCV15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WangLLDH15,
  author       = {Caihua Wang and
                  Juan Liu and
                  Fei Luo and
                  Zixing Deng and
                  Qian{-}Nan Hu},
  title        = {Predicting target-ligand interactions using protein ligand-binding
                  site and ligand substructures},
  journal      = {{BMC} Syst. Biol.},
  volume       = {9},
  number       = {{S-1}},
  pages        = {S2},
  year         = {2015},
  url          = {https://doi.org/10.1186/1752-0509-9-S1-S2},
  doi          = {10.1186/1752-0509-9-S1-S2},
  timestamp    = {Tue, 21 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcsb/WangLLDH15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WangYPLJMY15,
  author       = {Likun Wang and
                  Luhe Yang and
                  Zuohan Peng and
                  Dan Lu and
                  Yan Jin and
                  Michael McNutt and
                  Yuxin Yin},
  title        = {cisPath: an R/Bioconductor package for cloud users for visualization
                  and management of functional protein interaction networks},
  journal      = {{BMC} Syst. Biol.},
  volume       = {9},
  number       = {{S-1}},
  pages        = {S1},
  year         = {2015},
  url          = {https://doi.org/10.1186/1752-0509-9-S1-S1},
  doi          = {10.1186/1752-0509-9-S1-S1},
  timestamp    = {Tue, 05 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcsb/WangYPLJMY15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WuWLYLS15,
  author       = {Qingyao Wu and
                  Zhenyu Wang and
                  Chunshan Li and
                  Yunming Ye and
                  Yueping Li and
                  Ning Sun},
  title        = {Protein functional properties prediction in sparsely-label {PPI} networks
                  through regularized non-negative matrix factorization},
  journal      = {{BMC} Syst. Biol.},
  volume       = {9},
  number       = {{S-1}},
  pages        = {S9},
  year         = {2015},
  url          = {https://doi.org/10.1186/1752-0509-9-S1-S9},
  doi          = {10.1186/1752-0509-9-S1-S9},
  timestamp    = {Tue, 05 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcsb/WuWLYLS15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YuZDG15,
  author       = {Guo{-}Xian Yu and
                  Hailong Zhu and
                  Carlotta Domeniconi and
                  Maozu Guo},
  title        = {Integrating multiple networks for protein function prediction},
  journal      = {{BMC} Syst. Biol.},
  volume       = {9},
  number       = {{S-1}},
  pages        = {S3},
  year         = {2015},
  url          = {https://doi.org/10.1186/1752-0509-9-S1-S3},
  doi          = {10.1186/1752-0509-9-S1-S3},
  timestamp    = {Thu, 12 Nov 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcsb/YuZDG15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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