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@article{DBLP:journals/bmcsb/AchcarCM11,
author = {Fiona Achcar and
Jean{-}Michel Camadro and
Denis Mestivier},
title = {A Boolean probabilistic model of metabolic adaptation to oxygen in
relation to iron homeostasis and oxidative stress},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {51},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-51},
doi = {10.1186/1752-0509-5-51},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/AchcarCM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/AhmedASCK11,
author = {Shiek S. S. J. Ahmed and
Abdul R. Ahameethunisa and
Winkins Santosh and
Srinivasa Chakravarthy and
Suresh Kumar},
title = {Systems biological approach on neurological disorders: a novel molecular
connectivity to aging and psychiatric diseases},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {6},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-6},
doi = {10.1186/1752-0509-5-6},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/AhmedASCK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Al-ShyoukhYFYDHSS11,
author = {Ibrahim Al{-}Shyoukh and
Fuqu Yu and
Jiaying Feng and
Karen Yan and
Steven Dubinett and
Chih{-}Ming Ho and
Jeff S. Shamma and
Ren Sun},
title = {Systematic quantitative characterization of cellular responses induced
by multiple signals},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {88},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-88},
doi = {10.1186/1752-0509-5-88},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Al-ShyoukhYFYDHSS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/AlvarezW11,
author = {Angel Alvarez and
Peter J. Woolf},
title = {Partially observed bipartite network analysis to identify predictive
connections in transcriptional regulatory networks},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {86},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-86},
doi = {10.1186/1752-0509-5-86},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/AlvarezW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/AryalSKGMMKSPJ11,
author = {Uma K. Aryal and
Jana St{\"{o}}ckel and
Ravi K. Krovvidi and
Marina A. Gritsenko and
Matthew E. Monroe and
Ronald J. Moore and
David W. Koppenaal and
Richard D. Smith and
Himadri B. Pakrasi and
Jon M. Jacobs},
title = {Dynamic proteomic profiling of a unicellular cyanobacterium Cyanothece
{ATCC51142} across light-dark diurnal cycles},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {194},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-194},
doi = {10.1186/1752-0509-5-194},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/AryalSKGMMKSPJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/AtesOA11,
author = {{\"{O}}zlem Ates and
Ebru Oner and
Kazim Yal{\c{c}}in Arga},
title = {Genome-scale reconstruction of metabolic network for a halophilic
extremophile, Chromohalobacter salexigens {DSM} 3043},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {12},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-12},
doi = {10.1186/1752-0509-5-12},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/AtesOA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/AzuajeWZLRZDW11,
author = {Francisco Azuaje and
Haiying Wang and
Huiru Zheng and
Fr{\'{e}}d{\'{e}}rique L{\'{e}}onard and
Magali Rolland{-}Turner and
Lu Zhang and
Yvan Devaux and
Daniel R. Wagner},
title = {Predictive integration of gene functional similarity and co-expression
defines treatment response of endothelial progenitor cells},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {46},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-46},
doi = {10.1186/1752-0509-5-46},
timestamp = {Thu, 18 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/AzuajeWZLRZDW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BaumlerPRGP11,
author = {David J. Baumler and
Roman G. Peplinski and
Jennifer L. Reed and
Jeremy D. Glasner and
Nicole T. Perna},
title = {The evolution of metabolic networks of E. coli},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {182},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-182},
doi = {10.1186/1752-0509-5-182},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BaumlerPRGP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BekaertC11,
author = {Micha{\"{e}}l Bekaert and
Gavin C. Conant},
title = {Transcriptional robustness and protein interactions are associated
in yeast},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {62},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-62},
doi = {10.1186/1752-0509-5-62},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BekaertC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Ben-HamoE11,
author = {Rotem Ben{-}Hamo and
Sol Efroni},
title = {The whole-organism heavy chain {B} cell repertoire from Zebrafish
self-organizes into distinct network features},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {27},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-27},
doi = {10.1186/1752-0509-5-27},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Ben-HamoE11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BernaboBMRLMB11,
author = {Nicola Bernab{\`{o}} and
Paolo Berardinelli and
Annunziata Mauro and
Valentina Russo and
Pia Lucidi and
Mauro Mattioli and
Barbara Barboni},
title = {The role of actin in capacitation-related signaling: an in silico
and in vitro study},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {47},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-47},
doi = {10.1186/1752-0509-5-47},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BernaboBMRLMB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Beurton-AimarBMVDC11,
author = {Marie Beurton{-}Aimar and
Bertrand Beauvoit and
Antoine Monier and
Fran{\c{c}}ois Vall{\'{e}}e and
Martine Dieuaide{-}Noubhani and
Sophie Colombi{\'{e}}},
title = {Comparison between elementary flux modes analysis and 13C-metabolic
fluxes measured in bacterial and plant cells},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {95},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-95},
doi = {10.1186/1752-0509-5-95},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/Beurton-AimarBMVDC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BhattacharyaZA11,
author = {Sudin Bhattacharya and
Qiang Zhang and
Melvin E. Andersen},
title = {A deterministic map of Waddington's epigenetic landscape for cell
fate specification},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {85},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-85},
doi = {10.1186/1752-0509-5-85},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BhattacharyaZA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BiliourisDK11,
author = {Konstantinos Biliouris and
Prodromos Daoutidis and
Yiannis N. Kaznessis},
title = {Stochastic simulations of the tetracycline operon},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {9},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-9},
doi = {10.1186/1752-0509-5-9},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BiliourisDK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BlanchiniF11,
author = {Franco Blanchini and
Elisa Franco},
title = {Structurally robust biological networks},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {74},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-74},
doi = {10.1186/1752-0509-5-74},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BlanchiniF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BordbarFUWPF11,
author = {Aarash Bordbar and
Adam M. Feist and
Renata Usaite{-}Black and
Joseph Woodcock and
Bernhard O. Palsson and
Iman Famili},
title = {A multi-tissue type genome-scale metabolic network for analysis of
whole-body systems physiology},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {180},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-180},
doi = {10.1186/1752-0509-5-180},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BordbarFUWPF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BordbarJP11,
author = {Aarash Bordbar and
Neema Jamshidi and
Bernhard O. Palsson},
title = {iAB-RBC-283: {A} proteomically derived knowledge-base of erythrocyte
metabolism that can be used to simulate its physiological and patho-physiological
states},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {110},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-110},
doi = {10.1186/1752-0509-5-110},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BordbarJP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BritoA11,
author = {Glauber C. Brito and
David W. Andrews},
title = {Removing bias against membrane proteins in interaction networks},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {169},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-169},
doi = {10.1186/1752-0509-5-169},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BritoA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BucherRSMVWTNZR11,
author = {Joachim Bucher and
Stephan Riedmaier and
Anke Schnabel and
Katrin Marcus and
Gabriele Vacun and
Thomas S. Weiss and
Wolfgang E. Thasler and
Andreas K. N{\"{u}}ssler and
Ulrich M. Zanger and
Matthias Reuss},
title = {A systems biology approach to dynamic modeling and inter-subject variability
of statin pharmacokinetics in human hepatocytes},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {66},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-66},
doi = {10.1186/1752-0509-5-66},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BucherRSMVWTNZR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BuonaguroWTBM11,
author = {Luigi Buonaguro and
Ena Wang and
Maria Lina Tornesello and
Franco M. Buonaguro and
Francesco M. Marincola},
title = {Systems biology applied to vaccine and immunotherapy development},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {146},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-146},
doi = {10.1186/1752-0509-5-146},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BuonaguroWTBM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BurkardPKBBBSC11,
author = {Thomas R. Burkard and
Melanie Planyavsky and
Ines Kaupe and
Florian P. Breitwieser and
Tilmann B{\"{u}}rckst{\"{u}}mmer and
Keiryn L. Bennett and
Giulio Superti{-}Furga and
Jacques Colinge},
title = {Initial characterization of the human central proteome},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {17},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-17},
doi = {10.1186/1752-0509-5-17},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BurkardPKBBBSC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CakmakQCDCCLOO11,
author = {Ali Cakmak and
Xinjian Qi and
Sarp A. Coskun and
Mitali Das and
En Cheng and
A. Erc{\"{u}}ment {\c{C}}i{\c{c}}ek and
Nicola Lai and
Gultekin {\"{O}}zsoyoglu and
Z. Meral {\"{O}}zsoyoglu},
title = {PathCase-SB architecture and database design},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {188},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-188},
doi = {10.1186/1752-0509-5-188},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CakmakQCDCCLOO11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CarbonellPFF11,
author = {Pablo Carbonell and
Anne{-}Ga{\"{e}}lle Planson and
Davide Fichera and
Jean{-}Loup Faulon},
title = {A retrosynthetic biology approach to metabolic pathway design for
therapeutic production},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {122},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-122},
doi = {10.1186/1752-0509-5-122},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CarbonellPFF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CareS11,
author = {Bertrand R. Car{\'{e}} and
H{\'{e}}di Soula},
title = {Impact of receptor clustering on ligand binding},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {48},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-48},
doi = {10.1186/1752-0509-5-48},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CareS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CarinhasBTCAO11,
author = {Nuno Carinhas and
Vicente Bernal and
Ana P. Teixeira and
Manuel J. T. Carrondo and
Paula M. Alves and
Rui Oliveira},
title = {Hybrid metabolic flux analysis: combining stoichiometric and statistical
constraints to model the formation of complex recombinant products},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {34},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-34},
doi = {10.1186/1752-0509-5-34},
timestamp = {Fri, 19 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CarinhasBTCAO11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CaseyKSC11,
author = {Fergal P. Casey and
Nevan J. Krogan and
Denis C. Shields and
Gerard Cagney},
title = {Distinct configurations of protein complexes and biochemical pathways
revealed by epistatic interaction network motifs},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {133},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-133},
doi = {10.1186/1752-0509-5-133},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CaseyKSC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CelliereFHI11,
author = {Geraldine Celli{\`{e}}re and
Georgios Fengos and
Marianne Herv{\'{e}} and
Dagmar Iber},
title = {The plasticity of TGF-{\(\beta\)} signaling},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {184},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-184},
doi = {10.1186/1752-0509-5-184},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CelliereFHI11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChangTGBK11,
author = {Stewart T. Chang and
Nicolas Tchitchek and
Debashis Ghosh and
Arndt Benecke and
Michael G. Katze},
title = {A chemokine gene expression signature derived from meta-analysis predicts
the pathogenicity of viral respiratory infections},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {202},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-202},
doi = {10.1186/1752-0509-5-202},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChangTGBK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CharusantiCMLHMAAP11,
author = {Pep Charusanti and
Sadhana Chauhan and
Kathleen McAteer and
Joshua A. Lerman and
Daniel R. Hyduke and
Vladimir L. Motin and
Charles Ansong and
Joshua N. Adkins and
Bernhard O. Palsson},
title = {An experimentally-supported genome-scale metabolic network reconstruction
for Yersinia pestis {CO92}},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {163},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-163},
doi = {10.1186/1752-0509-5-163},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CharusantiCMLHMAAP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChenXRCW11,
author = {Li Chen and
Jianhua Xuan and
Rebecca B. Riggins and
Robert Clarke and
Yue Joseph Wang},
title = {Identifying cancer biomarkers by network-constrained support vector
machines},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {161},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-161},
doi = {10.1186/1752-0509-5-161},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChenXRCW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChoWG11,
author = {Ji{-}Hoon Cho and
Kai Wang and
David J. Galas},
title = {An integrative approach to inferring biologically meaningful gene
modules},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {117},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-117},
doi = {10.1186/1752-0509-5-117},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChoWG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChouBNY11,
author = {Ching{-}Shan Chou and
Lee Bardwell and
Qing Nie and
Tau{-}Mu Yi},
title = {Noise filtering tradeoffs in spatial gradient sensing and cell polarization
response},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {196},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-196},
doi = {10.1186/1752-0509-5-196},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChouBNY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChuLCR11,
author = {Jen{-}hwa Chu and
Ross Lazarus and
Vincent J. Carey and
Benjamin A. Raby},
title = {Quantifying differential gene connectivity between disease states
for objective identification of disease-relevant genes},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {89},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-89},
doi = {10.1186/1752-0509-5-89},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChuLCR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ClausznitzerE11,
author = {Diana Clausznitzer and
Robert G. Endres},
title = {Noise characteristics of the Escherichia coli rotary motor},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {151},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-151},
doi = {10.1186/1752-0509-5-151},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ClausznitzerE11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CrombachH11,
author = {Anton Crombach and
Paulien Hogeweg},
title = {Is RNA-dependent {RNA} polymerase essential for transposon control?},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {104},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-104},
doi = {10.1186/1752-0509-5-104},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CrombachH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CuccatoPSGBB11,
author = {Giulia Cuccato and
Athanasios Polynikis and
Velia Siciliano and
Mafalda Graziano and
Mario di Bernardo and
Diego di Bernardo},
title = {Modeling {RNA} interference in mammalian cells},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {19},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-19},
doi = {10.1186/1752-0509-5-19},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CuccatoPSGBB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DiazKSARSSS11,
author = {Celine Diaz and
Miyako Kusano and
Ronan Sulpice and
Mitsutaka Araki and
Henning Redestig and
Kazuki Saito and
Mark Stitt and
Ryoung Shin},
title = {Determining novel functions of Arabidopsis 14-3-3 proteins in central
metabolic processes},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {192},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-192},
doi = {10.1186/1752-0509-5-192},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/DiazKSARSSS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DikiciogluKRPKO11,
author = {Duygu Dikicioglu and
Muhammed Erkan Karabekmez and
Bharat Rash and
Pinar Pir and
Bet{\"{u}}l Kirdar and
Stephen G. Oliver},
title = {How yeast re-programmes its transcriptional profile in response to
different nutrient impulses},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {148},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-148},
doi = {10.1186/1752-0509-5-148},
timestamp = {Tue, 16 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/DikiciogluKRPKO11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DingW11,
author = {Shengchao Ding and
Wei Wang},
title = {Recipes and mechanisms of cellular reprogramming: a case study on
budding yeast Saccharomyces cerevisiae},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {50},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-50},
doi = {10.1186/1752-0509-5-50},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/DingW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DoumaBTKKZVKBDHG11,
author = {Rutger D. Douma and
Joana M. Batista and
Kai M. Touw and
Jan A. K. W. Kiel and
Arjen M. Krikken and
Zheng Zhao and
T{\^{a}}nia Veiga and
Paul Klaassen and
Roel A. L. Bovenberg and
Jean{-}Marc Daran and
Joseph J. Heijnen and
Walter M. van Gulik},
title = {Degeneration of penicillin production in ethanol-limited chemostat
cultivations of Penicillium chrysogenum: {A} systems biology approach},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {132},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-132},
doi = {10.1186/1752-0509-5-132},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/DoumaBTKKZVKBDHG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DurzinskyWM11,
author = {Markus Durzinsky and
Annegret Wagler and
Wolfgang Marwan},
title = {Reconstruction of extended Petri nets from time series data and its
application to signal transduction and to gene regulatory networks},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {113},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-113},
doi = {10.1186/1752-0509-5-113},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/DurzinskyWM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ErikssonAZT11,
author = {Olivia Eriksson and
Tom Andersson and
Yishao Zhou and
Jesper Tegn{\'{e}}r},
title = {Decoding complex biological networks - tracing essential and modulatory
parameters in complex and simplified models of the cell cycle},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {123},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-123},
doi = {10.1186/1752-0509-5-123},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ErikssonAZT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FangJYJZW11,
author = {Hai Fang and
Wen Jin and
Ying Yang and
Ying Jin and
Ji Zhang and
Kankan Wang},
title = {An organogenesis network-based comparative transcriptome analysis
for understanding early human development in vivo and in vitro},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {108},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-108},
doi = {10.1186/1752-0509-5-108},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/FangJYJZW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FangZSLCZPGS011,
author = {Kechi Fang and
Hansheng Zhao and
Changyue Sun and
Carolyn M. C. Lam and
Suhua Chang and
Kunlin Zhang and
Gurudutta Panda and
Miguel Godinho and
V{\'{\i}}tor A. P. Martins dos Santos and
Jing Wang},
title = {Exploring the metabolic network of the epidemic pathogen Burkholderia
cenocepacia {J2315} via genome-scale reconstruction},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {83},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-83},
doi = {10.1186/1752-0509-5-83},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/FangZSLCZPGS011.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FerreiraDTCPISO11,
author = {Ana R. Ferreira and
Jo{\~{a}}o M. L. Dias and
Ana P. Teixeira and
Nuno Carinhas and
Rui M. C. Portela and
In{\^{e}}s A. Isidro and
Moritz von Stosch and
Rui Oliveira},
title = {Projection to latent pathways {(PLP):} a constrained projection to
latent variables {(PLS)} method for elementary flux modes discrimination},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {181},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-181},
doi = {10.1186/1752-0509-5-181},
timestamp = {Fri, 19 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/FerreiraDTCPISO11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FinleyEIP11,
author = {Stacey D. Finley and
Marianne O. Engel{-}Stefanini and
Princess I. Imoukhuede and
Aleksander S. Popel},
title = {Pharmacokinetics and pharmacodynamics of VEGF-neutralizing antibodies},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {193},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-193},
doi = {10.1186/1752-0509-5-193},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/FinleyEIP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FlorezGPTS11,
author = {Lope A. Fl{\'{o}}rez and
Katrin Gunka and
Rafael Polan{\'{\i}}a and
Stefan Tholen and
J{\"{o}}rg St{\"{u}}lke},
title = {{SPABBATS:} {A} pathway-discovery method based on Boolean satisfiability
that facilitates the characterization of suppressor mutants},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {5},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-5},
doi = {10.1186/1752-0509-5-5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/FlorezGPTS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Forsten-WilliamsKN11,
author = {Kimberly Forsten{-}Williams and
Elma Kurtagic and
Matthew A. Nugent},
title = {Complex receptor-ligand dynamics control the response of the {VEGF}
system to protease injury},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {170},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-170},
doi = {10.1186/1752-0509-5-170},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Forsten-WilliamsKN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FukushimaKRAS11,
author = {Atsushi Fukushima and
Miyako Kusano and
Henning Redestig and
Masanori Arita and
Kazuki Saito},
title = {Metabolomic correlation-network modules in Arabidopsis based on a
graph-clustering approach},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {1},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-1},
doi = {10.1186/1752-0509-5-1},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/FukushimaKRAS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GauthierP11,
author = {John H. Gauthier and
Phillip I. Pohl},
title = {A general framework for modeling growth and division of mammalian
cells},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {3},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-3},
doi = {10.1186/1752-0509-5-3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GauthierP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Ge11,
author = {Steven X. Ge},
title = {Large-scale analysis of expression signatures reveals hidden links
among diverse cellular processes},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {87},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-87},
doi = {10.1186/1752-0509-5-87},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Ge11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GencKO11,
author = {Seda Genc and
Isil Aksan Kurnaz and
Mustafa {\"{O}}zilgen},
title = {Astrocyte - neuron lactate shuttle may boost more {ATP} supply to
the neuron under hypoxic conditions - in silico study supported by
in vitro expression data},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {162},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-162},
doi = {10.1186/1752-0509-5-162},
timestamp = {Fri, 12 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/GencKO11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GhoshSGBBK11,
author = {Sayantari Ghosh and
Kamakshi Sureka and
Bhaswar Ghosh and
Indrani Bose and
Joyoti Basu and
Manikuntala Kundu},
title = {Phenotypic heterogeneity in mycobacterial stringent response},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {18},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-18},
doi = {10.1186/1752-0509-5-18},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GhoshSGBBK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GlatignyMHDMM11,
author = {Annie Glatigny and
Lise Mathieu and
Christopher J. Herbert and
Genevi{\`{e}}ve Dujardin and
Brigitte Meunier and
Marie{-}H{\'{e}}l{\`{e}}ne Mucchielli{-}Giorgi},
title = {An in silico approach combined with in vivo experiments enables the
identification of a new protein whose overexpression can compensate
for specific respiratory defects in Saccharomyces cerevisiae},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {173},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-173},
doi = {10.1186/1752-0509-5-173},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GlatignyMHDMM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GohlerKSGGRSJK11,
author = {Anna{-}Katharina G{\"{o}}hler and
{\"{O}}znur K{\"{o}}kpinar and
Wolfgang Schmidt{-}Heck and
Robert Geffers and
Reinhard Guthke and
Ursula Rinas and
Stefan Schuster and
Knut Jahreis and
Christoph Kaleta},
title = {More than just a metabolic regulator - elucidation and validation
of new targets of PdhR in Escherichia coli},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {197},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-197},
doi = {10.1186/1752-0509-5-197},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/GohlerKSGGRSJK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GomezCAPPQ11,
author = {Antonio G{\'{o}}mez Moruno and
Juan Cedano and
Isaac Amela and
Antoni Planas and
Jaume Pi{\~{n}}ol and
Enrique Querol},
title = {Gene Ontology Function prediction in Mollicutes using Protein-Protein
Association Networks},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {49},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-49},
doi = {10.1186/1752-0509-5-49},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GomezCAPPQ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GranqvistOM11,
author = {Emma Granqvist and
Giles E. D. Oldroyd and
Richard J. Morris},
title = {Automated Bayesian model development for frequency detection in biological
time series},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {97},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-97},
doi = {10.1186/1752-0509-5-97},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GranqvistOM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GrantSFBSL11,
author = {Matthew A. A. Grant and
Chiara Saggioro and
Ulisse Ferrari and
Bruno Bassetti and
Bianca Sclavi and
Marco Cosentino Lagomarsino},
title = {DnaA and the timing of chromosome replication in Es-cherichia coli
as a function of growth rate},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {201},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-201},
doi = {10.1186/1752-0509-5-201},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GrantSFBSL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GuestYLHKF11,
author = {Stephen Guest and
Jingkai Yu and
Dongmei Liu and
Julie A. Hines and
Maria A. Kashat and
Russell L. Finley Jr.},
title = {A protein network-guided screen for cell cycle regulators in Drosophila},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {65},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-65},
doi = {10.1186/1752-0509-5-65},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GuestYLHKF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GuptaMMGS11,
author = {Shakti Gupta and
Mano Ram Maurya and
Alfred H. Merrill Jr. and
Christopher K. Glass and
Shankar Subramaniam},
title = {Integration of lipidomics and transcriptomics data towards a systems
biology model of sphingolipid metabolism},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {26},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-26},
doi = {10.1186/1752-0509-5-26},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GuptaMMGS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GuptaSADBBF11,
author = {Rita Gupta and
Anna Stincone and
Philipp Antczak and
Sarah Durant and
Roy Bicknell and
Andreas Bikfalvi and
Francesco Falciani},
title = {A computational framework for gene regulatory network inference that
combines multiple methods and datasets},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {52},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-52},
doi = {10.1186/1752-0509-5-52},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GuptaSADBBF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GurskyPMMSRS11,
author = {Vitaly V. Gursky and
Lena Panok and
Ekaterina M. Myasnikova and
Manu and
Maria Samsonova and
John Reinitz and
Alexander M. Samsonov},
title = {Mechanisms of gap gene expression canalization in the Drosophila blastoderm},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {118},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-118},
doi = {10.1186/1752-0509-5-118},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GurskyPMMSRS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HadickeGK11,
author = {Oliver H{\"{a}}dicke and
Hartmut Grammel and
Steffen Klamt},
title = {Metabolic network modeling of redox balancing and biohydrogen production
in purple nonsulfur bacteria},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {150},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-150},
doi = {10.1186/1752-0509-5-150},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HadickeGK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HartMMA11,
author = {Yuval Hart and
Avraham E. Mayo and
Ron Milo and
Uri Alon},
title = {Robust Control of {PEP} Formation Rate in the Carbon Fixation Pathway
of C\({}_{\mbox{4 }}\)Plants by a Bi-functional Enzyme},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {171},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-171},
doi = {10.1186/1752-0509-5-171},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HartMMA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HausJMJFBKW11,
author = {Sylvia Haus and
Sara Jabbari and
Thomas Millat and
Holger Janssen and
Ralf{-}J{\"{o}}rg Fischer and
Hubert Bahl and
John R. King and
Olaf Wolkenhauer},
title = {A systems biology approach to investigate the effect of pH-induced
gene regulation on solvent production by Clostridium acetobutylicum
in continuous culture},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {10},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-10},
doi = {10.1186/1752-0509-5-10},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/HausJMJFBKW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HendrixRPCSMS11,
author = {William Hendrix and
Andrea M. Rocha and
Kanchana Padmanabhan and
Alok N. Choudhary and
Kathleen Scott and
James R. Mihelcic and
Nagiza F. Samatova},
title = {{DENSE:} efficient and prior knowledge-driven discovery of phenotype-associated
protein functional modules},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {172},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-172},
doi = {10.1186/1752-0509-5-172},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HendrixRPCSMS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HermanTS11,
author = {Dorota Herman and
Christopher M. Thomas and
Dov J. Stekel},
title = {Global transcription regulation of {RK2} plasmids: a case study in
the combined use of dynamical mathematical models and statistical
inference for integration of experimental data and hypothesis exploration},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {119},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-119},
doi = {10.1186/1752-0509-5-119},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HermanTS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Higareda-AlmarazEHRE11,
author = {Juan Higareda{-}Almaraz and
Mar{\'{\i}}a Enr{\'{\i}}quez{-}Gasca and
Magdalena Hern{\'{a}}ndez{-}Ortiz and
Osbaldo Resendis{-}Antonio and
Sergio Encarnaci{\'{o}}n{-}Guevara},
title = {Proteomic patterns of cervical cancer cell lines, a network perspective},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {96},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-96},
doi = {10.1186/1752-0509-5-96},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Higareda-AlmarazEHRE11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HoehndorfDGWBCG11,
author = {Robert Hoehndorf and
Michel Dumontier and
John H. Gennari and
Sarala M. Wimalaratne and
Bernard de Bono and
Daniel L. Cook and
Georgios V. Gkoutos},
title = {Integrating systems biology models and biomedical ontologies},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {124},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-124},
doi = {10.1186/1752-0509-5-124},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HoehndorfDGWBCG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HouBB11,
author = {Chen Hou and
Kendra Bolt and
Aviv Bergman},
title = {A General Life History Theory for Effects of Caloric Restriction on
Health Maintenance},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {78},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-78},
doi = {10.1186/1752-0509-5-78},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HouBB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/IhekwabaS11,
author = {Adaoha E. C. Ihekwaba and
Sean Sedwards},
title = {Communicating oscillatory networks: frequency domain analysis},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {203},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-203},
doi = {10.1186/1752-0509-5-203},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/IhekwabaS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ImamYSGRND11,
author = {Saheed Imam and
Safak Yilmaz and
Ugur Sohmen and
Alexander S. Gorzalski and
Jennifer L. Reed and
Daniel R. Noguera and
Timothy J. Donohue},
title = {iRsp1095: {A} genome-scale reconstruction of the Rhodobacter sphaeroides
metabolic network},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {116},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-116},
doi = {10.1186/1752-0509-5-116},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ImamYSGRND11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/IpCL11,
author = {Kuhn Ip and
Caroline Colijn and
Desmond S. Lun},
title = {Analysis of complex metabolic behavior through pathway decomposition},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {91},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-91},
doi = {10.1186/1752-0509-5-91},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/IpCL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JablonskyBW11,
author = {Jiri Jablonsky and
Hermann Bauwe and
Olaf Wolkenhauer},
title = {Modeling the Calvin-Benson cycle},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {185},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-185},
doi = {10.1186/1752-0509-5-185},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JablonskyBW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JackWS11,
author = {John Jack and
John Wambaugh and
Imran Shah},
title = {Simulating Quantitative Cellular Responses Using Asynchronous Threshold
Boolean Network Ensembles},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {109},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-109},
doi = {10.1186/1752-0509-5-109},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JackWS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JagannathanR11,
author = {Vidhya Jagannathan and
Marc Robinson{-}Rechavi},
title = {Meta-analysis of estrogen response in {MCF-7} distinguishes early
target genes involved in signaling and cell proliferation from later
target genes involved in cell cycle and {DNA} repair},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {138},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-138},
doi = {10.1186/1752-0509-5-138},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JagannathanR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JamshidiMMEK11,
author = {Neema Jamshidi and
Franklin J. Miller and
Jess Mandel and
Timothy Evans and
Michael D. Kuo},
title = {Individualized therapy of {HHT} driven by network analysis of metabolomic
profiles},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {200},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-200},
doi = {10.1186/1752-0509-5-200},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JamshidiMMEK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JenkinsonG11,
author = {W. Garrett Jenkinson and
John Goutsias},
title = {Thermodynamically consistent model calibration in chemical kinetics},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {64},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-64},
doi = {10.1186/1752-0509-5-64},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JenkinsonG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JennenRMPLDK11,
author = {Danyel Jennen and
Ainhoa Ruiz{-}Aracama and
Christina Magkoufopoulou and
Ad Peijnenburg and
Arjen Lommen and
Joost van Delft and
Jos Kleinjans},
title = {Integrating transcriptomics and metabonomics to unravel modes-of-action
of 2, 3, 7, 8-tetrachlorodibenzo-p-dioxin {(TCDD)} in HepG2 cells},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {139},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-139},
doi = {10.1186/1752-0509-5-139},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/JennenRMPLDK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JensenLP11,
author = {Paul A. Jensen and
Kyla Lutz and
Jason A. Papin},
title = {{TIGER:} Toolbox for integrating genome-scale metabolic models, expression
data, and transcriptional regulatory networks},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {147},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-147},
doi = {10.1186/1752-0509-5-147},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JensenLP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JinHBDL11,
author = {Yufang Jin and
Hai{-}Chao Han and
Jamie Berger and
Qiuxia Dai and
Merry Lindsey},
title = {Combining experimental and mathematical modeling to reveal mechanisms
of macrophage-dependent left ventricular remodeling},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {60},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-60},
doi = {10.1186/1752-0509-5-60},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JinHBDL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JosephidesM11,
author = {Christos Josephides and
Alan M. Moses},
title = {Modeling the evolution of a classic genetic switch},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {24},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-24},
doi = {10.1186/1752-0509-5-24},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JosephidesM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KandhaveluMGHLYR11,
author = {Meenakshisundaram Kandhavelu and
Henrik Mannerstr{\"{o}}m and
Abhishekh Gupta and
Antti H{\"{a}}kkinen and
Jason Lloyd{-}Price and
Olli Yli{-}Harja and
Andre S. Ribeiro},
title = {In vivo kinetics of transcription initiation of the lar promoter in
Escherichia coli. Evidence for a sequential mechanism with two rate-limiting
steps},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {149},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-149},
doi = {10.1186/1752-0509-5-149},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/KandhaveluMGHLYR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KaurMSNCB11,
author = {Mandeep Kaur and
Cameron MacPherson and
Sebastian Schmeier and
Kothandaraman Narasimhan and
Mahesh Choolani and
Vladimir B. Bajic},
title = {In Silico discovery of transcription factors as potential diagnostic
biomarkers of ovarian cancer},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {144},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-144},
doi = {10.1186/1752-0509-5-144},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/KaurMSNCB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KelderEKEKE11,
author = {Thomas Kelder and
Lars M. T. Eijssen and
Robert Kleemann and
Marjan van Erk and
Teake Kooistra and
Chris T. A. Evelo},
title = {Exploring pathway interactions in insulin resistant mouse liver},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {127},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-127},
doi = {10.1186/1752-0509-5-127},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KelderEKEKE11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KippnerFSK11,
author = {Linda E. Kippner and
Nnenna A. Finn and
Shreya Shukla and
Melissa L. Kemp},
title = {Systemic remodeling of the redox regulatory network due to RNAi perturbations
of glutaredoxin 1, thioredoxin 1, and glucose-6-phosphate dehydrogenase},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {164},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-164},
doi = {10.1186/1752-0509-5-164},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KippnerFSK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KlannLR11,
author = {Michael Klann and
Alexei Lapin and
Matthias Reuss},
title = {Agent-based simulation of reactions in the crowded and structured
intracellular environment: Influence of mobility and location of the
reactants},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {71},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-71},
doi = {10.1186/1752-0509-5-71},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KlannLR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KleemannBPKVWHNOK11,
author = {Robert Kleemann and
Svetlana Bureeva and
Ally Perlina and
Jim Kaput and
Lars Verschuren and
Peter Y. Wielinga and
Eva Hurt{-}Camejo and
Yuri Nikolsky and
Ben van Ommen and
Teake Kooistra},
title = {A Systems Biology Strategy for Predicting Similarities and Differences
of Drug Effects: Evidence for Drug-specific Modulation of Inflammation
in Atherosclerosis},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {125},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-125},
doi = {10.1186/1752-0509-5-125},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KleemannBPKVWHNOK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KotovBGGKCDUHAYSSV11,
author = {Nikolay V. Kotov and
Declan G. Bates and
Antonina N. Gizatullina and
Bulat Gilaziev and
Rustem N. Khairullin and
Michael Z. Q. Chen and
Ignat Drozdov and
Yoshinori Umezawa and
Christian Hundhausen and
Alexey Aleksandrov and
Xing{-}Gang Yan and
Sarah K. Spurgeon and
C. Mark Smales and
Najl V. Valeyev},
title = {Computational modelling elucidates the mechanism of ciliary regulation
in health and disease},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {143},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-143},
doi = {10.1186/1752-0509-5-143},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KotovBGGKCDUHAYSSV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KozhenkovSDGRPB11,
author = {Sergey Kozhenkov and
Mayya Sedova and
Yulia Dubinina and
Amarnath Gupta and
Animesh Ray and
Julia V. Ponomarenko and
Michael Baitaluk},
title = {BiologicalNetworks - tools enabling the integration of multi-scale
data for the host-pathogen studies},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {7},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-7},
doi = {10.1186/1752-0509-5-7},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KozhenkovSDGRPB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Kravchenko-BalashaRGRLL11,
author = {Nataly Kravchenko{-}Balasha and
Fran{\c{c}}oise Remacle and
Ayelet Gross and
Varda Rotter and
Alexander Levitzki and
Raphael D. Levine},
title = {Convergence of Logic of Cellular Regulation in Different Premalignant
Cells by an Information Theoretic Approach},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {42},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-42},
doi = {10.1186/1752-0509-5-42},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/Kravchenko-BalashaRGRLL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KrumsiekSIAT11,
author = {Jan Krumsiek and
Karsten Suhre and
Thomas Illig and
Jerzy Adamski and
Fabian J. Theis},
title = {Gaussian graphical modeling reconstructs pathway reactions from high-throughput
metabolomics data},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {21},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-21},
doi = {10.1186/1752-0509-5-21},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/KrumsiekSIAT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KumarFM11,
author = {Vinay Satish Kumar and
James G. Ferry and
Costas D. Maranas},
title = {Metabolic reconstruction of the archaeon methanogen Methanosarcina
Acetivorans},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {28},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-28},
doi = {10.1186/1752-0509-5-28},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KumarFM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LanM11,
author = {Yueheng Lan and
Igor Mezic},
title = {On the architecture of cell regulation networks},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {37},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-37},
doi = {10.1186/1752-0509-5-37},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LanM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LarsenSTPCC11,
author = {Peter E. Larsen and
Avinash Sreedasyam and
Geetika Trivedi and
Gopi K. Podila and
Leland J. Cseke and
Frank Collart},
title = {Using next generation transcriptome sequencing to predict an ectomycorrhizal
metabolome},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {70},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-70},
doi = {10.1186/1752-0509-5-70},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LarsenSTPCC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LeeKJ11,
author = {Sang Lee and
Pan{-}Jun Kim and
Hawoong Jeong},
title = {Global organization of protein complexome in the yeast Saccharomyces
cerevisiae},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {126},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-126},
doi = {10.1186/1752-0509-5-126},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LeeKJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiCZL11,
author = {Bo Li and
Weiguo Cao and
Jizhong Zhou and
Feng Luo},
title = {Understanding and predicting synthetic lethal genetic interactions
in Saccharomyces cerevisiae using domain genetic interactions},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {73},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-73},
doi = {10.1186/1752-0509-5-73},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiCZL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiKJVABSOLKADW11,
author = {Zhenhong Li and
Kevin J. Kroll and
Kathleen M. Jensen and
Daniel L. Villeneuve and
Gerald T. Ankley and
Jayne V. Brian and
Mar{\'{\i}}a S. Sep{\'{u}}lveda and
Edward F. Orlando and
James M. Lazorchak and
Mitchell Kostich and
Brandon Armstrong and
Nancy D. Denslow and
Karen H. Watanabe},
title = {A computational model of the hypothalamic - pituitary - gonadal axis
in female fathead minnows (Pimephales promelas) exposed to 17{\(\alpha\)}-ethynylestradiol
and 17{\#}946;-trenbolone},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {63},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-63},
doi = {10.1186/1752-0509-5-63},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/LiKJVABSOLKADW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiLNLBW11,
author = {Zhenpeng Li and
Fei Li and
Ming Ni and
Peng Li and
Xiaochen Bo and
Shengqi Wang},
title = {Characterization the regulation of herpesvirus miRNAs from the view
of human protein interaction network},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {93},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-93},
doi = {10.1186/1752-0509-5-93},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiLNLBW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiTHY11,
author = {Shyh{-}Dar Li and
Tatsuaki Tagami and
Ying{-}Fu Ho and
Chen{-}Hsiang Yeang},
title = {Deciphering causal and statistical relations of molecular aberrations
and gene expressions in {NCI-60} cell lines},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {186},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-186},
doi = {10.1186/1752-0509-5-186},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiTHY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LindenEA11,
author = {Rolf Lind{\'{e}}n and
Ville{-}Pekka Eronen and
Tero Aittokallio},
title = {Quantitative maps of genetic interactions in yeast - Comparative evaluation
and integrative analysis},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {45},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-45},
doi = {10.1186/1752-0509-5-45},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LindenEA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiuSLLLLQZ11,
author = {Hui Liu and
Jianzhong Su and
Junhua Li and
Hongbo Liu and
Jie Lv and
Boyan Li and
Hong Qiao and
Yan Zhang},
title = {Prioritizing cancer-related genes with aberrant methylation based
on a weighted protein-protein interaction network},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {158},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-158},
doi = {10.1186/1752-0509-5-158},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiuSLLLLQZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LopesOC11,
author = {Fabr{\'{\i}}cio Martins Lopes and
Evaldo Ara{\'{u}}jo de Oliveira and
Roberto M. Cesar},
title = {Inference of gene regulatory networks from time series by Tsallis
entropy},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {61},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-61},
doi = {10.1186/1752-0509-5-61},
timestamp = {Wed, 08 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LopesOC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LuoFHW11,
author = {Weijun Luo and
Michael S. Friedman and
Kurt D. Hankenson and
Peter J. Woolf},
title = {Time series gene expression profiling and temporal regulatory pathway
analysis of {BMP6} induced osteoblast differentiation and mineralization},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {82},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-82},
doi = {10.1186/1752-0509-5-82},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LuoFHW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MadarDBA11,
author = {Daniel Madar and
Erez Dekel and
Anat Bren and
Uri Alon},
title = {Negative auto-regulation increases the input dynamic-range of the
arabinose system of Escherichia coli},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {111},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-111},
doi = {10.1186/1752-0509-5-111},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MadarDBA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MaierKWKRMTCFHVL11,
author = {Dieter Maier and
Wenzel Kalus and
Martin Wolff and
Susana G. Kalko and
Josep Roca and
Igor Mar{\'{\i}}n de Mas and
Nil Turan and
Marta Cascante and
Francesco Falciani and
Miguel Hernandez and
Jordi Vill{\`{a}}{-}Freixa and
Sascha Losko},
title = {Knowledge management for systems biology a general and visually driven
framework applied to translational medicine},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {38},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-38},
doi = {10.1186/1752-0509-5-38},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MaierKWKRMTCFHVL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Marquez-LagoL11,
author = {Tatiana T. Marquez{-}Lago and
Andr{\'{e}} Leier},
title = {Stochastic adaptation and fold-change detection: from single-cell
to population behavior},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {22},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-22},
doi = {10.1186/1752-0509-5-22},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Marquez-LagoL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MasSMROAC11,
author = {Igor Mar{\'{\i}}n de Mas and
Vitaly A. Selivanov and
Silvia Marin and
Josep Roca and
Matej Oresic and
Loranne Agius and
Marta Cascante},
title = {Compartmentation of glycogen metabolism revealed from \({}^{\mbox{13}}\)C
isotopologue distributions},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {175},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-175},
doi = {10.1186/1752-0509-5-175},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MasSMROAC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MausRU11,
author = {Carsten Maus and
Stefan Rybacki and
Adelinde M. Uhrmacher},
title = {Rule-based multi-level modeling of cell biological systems},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {166},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-166},
doi = {10.1186/1752-0509-5-166},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MausRU11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/McDermottSEBNLMSKKW11,
author = {Jason E. McDermott and
Harish Shankaran and
Amie J. Eisfeld and
Sarah E. Belisle and
Gabriele Neumann and
Chengjun Li and
Shannon K. McWeeney and
Carol Sabourin and
Yoshihiro Kawaoka and
Michael G. Katze and
Katrina M. Waters},
title = {Conserved host response to highly pathogenic avian influenza virus
infection in human cell culture, mouse and macaque model systems},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {190},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-190},
doi = {10.1186/1752-0509-5-190},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/McDermottSEBNLMSKKW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MeierTVGW11,
author = {Stuart Meier and
Oren Tzfadia and
Ratnakar Vallabhaneni and
Chris Gehring and
Eleanore T. Wurtzel},
title = {A transcriptional analysis of carotenoid, chlorophyll and plastidial
isoprenoid biosynthesis genes during development and osmotic stress
responses in Arabidopsis thaliana},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {77},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-77},
doi = {10.1186/1752-0509-5-77},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MeierTVGW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MelasMMWA11,
author = {Ioannis N. Melas and
Alexander Mitsos and
Dimitris E. Messinis and
Thomas S. Weiss and
Leonidas G. Alexopoulos},
title = {Combined logical and data-driven models for linking signalling pathways
to cellular response},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {107},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-107},
doi = {10.1186/1752-0509-5-107},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/MelasMMWA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MendizabalCSGBMMSTBGV11,
author = {Nieves V{\'{e}}lez de Mendiz{\'{a}}bal and
Jorge Carneiro and
Ricard V. Sol{\'{e}} and
Joaqu{\'{\i}}n Go{\~{n}}i and
Jean Bragard and
Ivan Martinez{-}Forero and
Sara Martinez{-}Pasamar and
Jorge Sepulcre and
Francisco Javier Torrealdea and
Francesca Bagnato and
Jordi Garc{\'{\i}}a{-}Ojalvo and
Pablo Villoslada},
title = {Modeling the effector - regulatory {T} cell cross-regulation reveals
the intrinsic character of relapses in Multiple Sclerosis},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {114},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-114},
doi = {10.1186/1752-0509-5-114},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MendizabalCSGBMMSTBGV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MilneERAKSJBP11,
author = {Caroline B. Milne and
James A. Eddy and
Ravali Raju and
Soroush Ardekani and
Pan{-}Jun Kim and
Ryan S. Senger and
Yong{-}Su Jin and
Hans P. Blaschek and
Nathan D. Price},
title = {Metabolic network reconstruction and genome-scale model of butanol-producing
strain Clostridium beijerinckii {NCIMB} 8052},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {130},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-130},
doi = {10.1186/1752-0509-5-130},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MilneERAKSJBP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/NagLGC11,
author = {Ambarish Nag and
Monte Lunacek and
Peter A. Graf and
Christopher H. Chang},
title = {Kinetic modeling and exploratory numerical simulation of chloroplastic
starch degradation},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {94},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-94},
doi = {10.1186/1752-0509-5-94},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/NagLGC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/NagarajR11,
author = {Shivashankar H. Nagaraj and
Antonio Reverter},
title = {A Boolean-based systems biology approach to predict novel genes associated
with cancer: Application to colorectal cancer},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {35},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-35},
doi = {10.1186/1752-0509-5-35},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/NagarajR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/NaruoNUSNNTTO11,
author = {Yoshimi Naruo and
Takeshi Nagashima and
Ryoko Ushikoshi{-}Nakayama and
Yuko Saeki and
Takashi Nakakuki and
Takashi Naka and
Hiroshi Tanaka and
Shih{-}Feng Tsai and
Mariko Okada{-}Hatakeyama},
title = {Epidermal growth factor receptor mutation in combination with expression
of {MIG6} alters gefitinib sensitivity},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {29},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-29},
doi = {10.1186/1752-0509-5-29},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/NaruoNUSNNTTO11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/NavratilCRL11,
author = {Vincent Navratil and
Beno{\^{\i}}t de Chassey and
Chantal Rabourdin{-}Combe and
Vincent Lotteau},
title = {When the human viral infectome and diseasome networks collide: towards
a systems biology platform for the aetiology of human diseases},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {13},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-13},
doi = {10.1186/1752-0509-5-13},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/NavratilCRL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/NdukumFSVD11,
author = {Juliet Ndukum and
Lu{\'{\i}}s L. Fonseca and
Helena Santos and
Eberhard O. Voit and
Susmita Datta},
title = {Statistical Inference Methods for Sparse Biological Time Series Data},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {57},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-57},
doi = {10.1186/1752-0509-5-57},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/NdukumFSVD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/NguyenLJ11,
author = {Thanh{-}Phuong Nguyen and
Wei{-}Chung Liu and
Ferenc Jord{\'{a}}n},
title = {Inferring pleiotropy by network analysis: linked diseases in the human
{PPI} network},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {179},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-179},
doi = {10.1186/1752-0509-5-179},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/NguyenLJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/NguyenSMP11,
author = {Thanh{-}Phuong Nguyen and
Marco Scotti and
Melissa J. Morine and
Corrado Priami},
title = {Model-based clustering reveals vitamin {D} dependent multi-centrality
hubs in a network of vitamin-related proteins},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {195},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-195},
doi = {10.1186/1752-0509-5-195},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/NguyenSMP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/NieSZTRCW11,
author = {Jeff Nie and
Ron M. Stewart and
Hang Zhang and
James A. Thomson and
Fang Ruan and
Xiaoqi Cui and
Hairong Wei},
title = {TF-Cluster: {A} pipeline for identifying functionally coordinated
transcription factors via network decomposition of the shared coexpression
connectivity matrix {(SCCM)}},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {53},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-53},
doi = {10.1186/1752-0509-5-53},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/NieSZTRCW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Olivares-HernandezBN11,
author = {Roberto Olivares{-}Hern{\'{a}}ndez and
Sergio Bordel and
Jens Nielsen},
title = {Codon usage variability determines the correlation between proteome
and transcriptome fold changes},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {33},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-33},
doi = {10.1186/1752-0509-5-33},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Olivares-HernandezBN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/OvertonGGHBSBC11,
author = {Ian M. Overton and
Shirley Graham and
Katherine A. Gould and
Jason Hinds and
Catherine H. Botting and
Sally Shirran and
Geoffrey J. Barton and
Peter J. Coote},
title = {Global network analysis of drug tolerance, mode of action and virulence
in methicillin-resistant S. aureus},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {68},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-68},
doi = {10.1186/1752-0509-5-68},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/OvertonGGHBSBC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PabingerRANT11,
author = {Stephan Pabinger and
Robert Rader and
Rasmus Agren and
Jens Nielsen and
Zlatko Trajanoski},
title = {MEMOSys: Bioinformatics platform for genome-scale metabolic models},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {20},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-20},
doi = {10.1186/1752-0509-5-20},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PabingerRANT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PandeyQHZK11,
author = {Priyanka Pandey and
Shan Qin and
Jacqueline Ho and
Jing Zhou and
Jordan A. Kreidberg},
title = {Systems biology approach to identify transcriptome reprogramming and
candidate microRNA targets during the progression of polycystic kidney
disease},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {56},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-56},
doi = {10.1186/1752-0509-5-56},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PandeyQHZK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ParkGJGBFLLKEHLOS11,
author = {Christopher C. Park and
Greg D. Gale and
Simone de Jong and
Anatole Ghazalpour and
Brian J. Bennett and
Charles R. Farber and
Peter Langfelder and
Andy Lin and
Arshad H. Khan and
Eleazar Eskin and
Steve Horvath and
Aldons J. Lusis and
Roel A. Ophoff and
Desmond J. Smith},
title = {Gene networks associated with conditional fear in mice identified
using a systems genetics approach},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {43},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-43},
doi = {10.1186/1752-0509-5-43},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ParkGJGBFLLKEHLOS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ParkKL11,
author = {Jong Park and
Tae Kim and
Sang Lee},
title = {Genome-scale reconstruction and in silico analysis of the Ralstonia
eutropha {H16} for polyhydroxyalkanoate synthesis, lithoautotrophic
growth, and 2-methyl citric acid production},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {101},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-101},
doi = {10.1186/1752-0509-5-101},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ParkKL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PatelHWK11,
author = {Yogendra Patel and
Catherine A. Heyward and
Michael R. H. White and
Douglas B. Kell},
title = {Predicting the points of interaction of small molecules in the NF-{\(\kappa\)}B
pathway},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {32},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-32},
doi = {10.1186/1752-0509-5-32},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PatelHWK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PerezWH11,
author = {Pablo D. P{\'{e}}rez and
Joel T. Weiss and
Stephen J. Hagen},
title = {Noise and crosstalk in two quorum-sensing inputs of Vibrio fischeri},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {153},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-153},
doi = {10.1186/1752-0509-5-153},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PerezWH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PerumalG11,
author = {Thanneer M. Perumal and
Rudiyanto Gunawan},
title = {Understanding dynamics using sensitivity analysis: caveat and solution},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {41},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-41},
doi = {10.1186/1752-0509-5-41},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PerumalG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PeyraudSKMVP11,
author = {R{\'{e}}mi Peyraud and
Kathrin Schneider and
Patrick Kiefer and
St{\'{e}}phane Massou and
Julia A. Vorholt and
Jean{-}Charles Portais},
title = {Genome-scale reconstruction and system level investigation of the
metabolic network of Methylobacterium extorquens {AM1}},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {189},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-189},
doi = {10.1186/1752-0509-5-189},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PeyraudSKMVP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PillayHR11,
author = {Ch{\'{e}} S. Pillay and
Jan{-}Hendrik S. Hofmeyr and
Johann M. Rohwer},
title = {The logic of kinetic regulation in the thioredoxin system},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {15},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-15},
doi = {10.1186/1752-0509-5-15},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PillayHR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PoelwijkHVKT11,
author = {Frank J. Poelwijk and
Philip D. Heyning and
Marjon G. J. de Vos and
Daniel J. Kiviet and
Sander J. Tans},
title = {Optimality and evolution of transcriptionally regulated gene expression},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {128},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-128},
doi = {10.1186/1752-0509-5-128},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/PoelwijkHVKT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PozoMAGJS11,
author = {Carlos Pozo and
Alberto Mar{\'{\i}}n{-}Sanguino and
Rui Alves and
Gonzalo Guill{\'{e}}n{-}Gos{\'{a}}lbez and
Laureano Jim{\'{e}}nez and
Albert Sorribas},
title = {Steady-state global optimization of metabolic non-linear dynamic models
through recasting into power-law canonical models},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {137},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-137},
doi = {10.1186/1752-0509-5-137},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/PozoMAGJS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/QuaiserDSM11,
author = {Tom Quaiser and
Anna Dittrich and
Fred Schaper and
Martin M{\"{o}}nnigmann},
title = {A simple work flow for biologically inspired model reduction - application
to early {JAK-STAT} signaling},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {30},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-30},
doi = {10.1186/1752-0509-5-30},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/QuaiserDSM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RaoP11,
author = {Aliz R. Rao and
Matteo Pellegrini},
title = {Regulation of the yeast metabolic cycle by transcription factors with
periodic activities},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {160},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-160},
doi = {10.1186/1752-0509-5-160},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RaoP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RedestigKEKOOMAFS11,
author = {Henning Redestig and
Miyako Kusano and
Kaworu Ebana and
Makoto Kobayashi and
Akira Oikawa and
Yozo Okazaki and
Fumio Matsuda and
Masanori Arita and
Naoko Fujita and
Kazuki Saito},
title = {Exploring molecular backgrounds of quality traits in rice by predictive
models based on high-coverage metabolomics},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {176},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-176},
doi = {10.1186/1752-0509-5-176},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RedestigKEKOOMAFS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ReesBSHECS11,
author = {Paul Rees and
M. Rowan Brown and
Huw D. Summers and
Mark D. Holton and
Rachel J. Errington and
Sally C. Chappell and
Paul J. Smith},
title = {A transfer function approach to measuring cell inheritance},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {31},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-31},
doi = {10.1186/1752-0509-5-31},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ReesBSHECS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Resendis-AntonioHSCBME11,
author = {Osbaldo Resendis{-}Antonio and
Magdalena Hern{\'{a}}ndez and
Emmanuel Salazar and
Sandra Contreras and
Gabriel Batallar and
Yolanda Mora and
Sergio Encarnaci{\'{o}}n},
title = {Systems biology of bacterial nitrogen fixation: High-throughput technology
and its integrative description with constraint-based modeling},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {120},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-120},
doi = {10.1186/1752-0509-5-120},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Resendis-AntonioHSCBME11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RodriguesW11,
author = {Jo{\~{a}}o F. Matias Rodrigues and
Andreas Wagner},
title = {Genotype networks, innovation, and robustness in sulfur metabolism},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {39},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-39},
doi = {10.1186/1752-0509-5-39},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RodriguesW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RolfssonPT11,
author = {Ottar Rolfsson and
Bernhard {\O}. Palsson and
Ines Thiele},
title = {The human metabolic reconstruction Recon 1 directs hypotheses of novel
human metabolic functions},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {155},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-155},
doi = {10.1186/1752-0509-5-155},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RolfssonPT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RyanGGAKCC11,
author = {Colm Ryan and
Derek Greene and
Aude Gu{\'{e}}nol{\'{e}} and
Haico van Attikum and
Nevan J. Krogan and
P{\'{a}}draig Cunningham and
Gerard Cagney},
title = {Improved functional overview of protein complexes using inferred epistatic
relationships},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {80},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-80},
doi = {10.1186/1752-0509-5-80},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RyanGGAKCC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RyuMBVR11,
author = {Taewoo Ryu and
Charalampos Mavromatis and
Till Bayer and
Christian R. Voolstra and
Timothy Ravasi},
title = {Unexpected complexity of the Reef-Building Coral Acropora millepora
transcription factor network},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {58},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-58},
doi = {10.1186/1752-0509-5-58},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RyuMBVR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SahlinMJ11,
author = {Patrik Sahlin and
Pontus Melke and
Henrik J{\"{o}}nsson},
title = {Models of sequestration and receptor cross-talk for explaining multiple
mutants in plant stem cell regulation},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {2},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-2},
doi = {10.1186/1752-0509-5-2},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SahlinMJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SakaLKUT11,
author = {Yasushi Saka and
C{\'{e}}dric Lhoussaine and
C{\'{e}}line Kuttler and
Ekkehard Ullner and
Marco Thiel},
title = {Theoretical basis of the community effect in development},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {54},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-54},
doi = {10.1186/1752-0509-5-54},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SakaLKUT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SamalWM11,
author = {Areejit Samal and
Andreas Wagner and
Olivier C. Martin},
title = {Environmental versatility promotes modularity in genome-scale metabolic
networks},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {135},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-135},
doi = {10.1186/1752-0509-5-135},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SamalWM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SassDBBLKMBRT011,
author = {Steffen Sass and
Sabine Dietmann and
Ulrike C. Burk and
Simone Brabletz and
Dominik Lutter and
Andreas Kowarsch and
Klaus F. X. Mayer and
Thomas Brabletz and
Andreas Ruepp and
Fabian J. Theis and
Yu Wang},
title = {MicroRNAs coordinately regulate protein complexes},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {136},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-136},
doi = {10.1186/1752-0509-5-136},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SassDBBLKMBRT011.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SchlageWGCMFHHPWLPDVPHD11,
author = {Walter K. Schlage and
Jurjen Willem Westra and
Stephan Gebel and
Natalie L. Catlett and
Carole Mathis and
Brian P. Frushour and
Arnd Hengstermann and
Aaron A. Van Hooser and
Carine Poussin and
Ben Wong and
Michael Lietz and
Jennifer Park and
David A. Drubin and
Emilija Veljkovic and
Manuel C. Peitsch and
Julia Hoeng and
Renee Deehan},
title = {A computable cellular stress network model for non-diseased pulmonary
and cardiovascular tissue},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {168},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-168},
doi = {10.1186/1752-0509-5-168},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SchlageWGCMFHHPWLPDVPHD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SchliemannBBAFS11,
author = {Monica Schliemann and
Eric Bullinger and
Steffen Borchers and
Frank Allg{\"{o}}wer and
Rolf Findeisen and
Peter Scheurich},
title = {Heterogeneity reduces sensitivity of cell death for TNF-Stimuli},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {204},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-204},
doi = {10.1186/1752-0509-5-204},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SchliemannBBAFS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SchmeierSEB11,
author = {Sebastian Schmeier and
Ulf Schaefer and
Magbubah Essack and
Vladimir B. Bajic},
title = {Network analysis of microRNAs and their regulation in human ovarian
cancer},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {183},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-183},
doi = {10.1186/1752-0509-5-183},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SchmeierSEB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SchryerVP11,
author = {David W. Schryer and
Marko Vendelin and
Pearu Peterson},
title = {Symbolic flux analysis for genome-scale metabolic networks},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {81},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-81},
doi = {10.1186/1752-0509-5-81},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/SchryerVP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SeatonK11,
author = {Daniel D. Seaton and
Jawahar Krishnan},
title = {The coupling of pathways and processes through shared components},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {103},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-103},
doi = {10.1186/1752-0509-5-103},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SeatonK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SerranoS11,
author = {M. {\'{A}}ngeles Serrano and
Francesc Sagu{\'{e}}s},
title = {Network-based scoring system for genome-scale metabolic reconstructions},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {76},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-76},
doi = {10.1186/1752-0509-5-76},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SerranoS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SettyCSSKE11,
author = {Yaki Setty and
Chih{-}Chun Chen and
Maria Secrier and
Nikita Skoblov and
Dimitrios Kalamatianos and
Stephen Emmott},
title = {How neurons migrate: a dynamic in-silico model of neuronal migration
in the developing cortex},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {154},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-154},
doi = {10.1186/1752-0509-5-154},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SettyCSSKE11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ShenHLWZWTWFSYNHL11,
author = {Changyu Shen and
Yi{-}Wen Huang and
Yunlong Liu and
Guohua Wang and
Yuming Zhao and
Zhiping Wang and
Mingxiang Teng and
Yadong Wang and
David A. Flockhart and
Todd C. Skaar and
Pearlly Yan and
Kenneth P. Nephew and
Tim Hui{-}Ming Huang and
Lang Li},
title = {A modulated empirical Bayes model for identifying topological and
temporal estrogen receptor {\(\alpha\)} regulatory networks in breast
cancer},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {67},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-67},
doi = {10.1186/1752-0509-5-67},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ShenHLWZWTWFSYNHL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Silva-RochaJTL11,
author = {Rafael Silva{-}Rocha and
Hidde de Jong and
Javier Tamames and
V{\'{\i}}ctor de Lorenzo},
title = {The logic layout of the {TOL} network of Pseudomonas putida pWW0 plasmid
stems from a metabolic amplifier motif {(MAM)} that optimizes biodegradation
of m-xylene},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {191},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-191},
doi = {10.1186/1752-0509-5-191},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/Silva-RochaJTL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SmithR11,
author = {Anthony C. Smith and
Alan J. Robinson},
title = {A metabolic model of the mitochondrion and its use in modelling diseases
of the tricarboxylic acid cycle},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {102},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-102},
doi = {10.1186/1752-0509-5-102},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SmithR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SonnenscheinGMH11,
author = {Nikolaus Sonnenschein and
Marcel Geertz and
Georgi Muskhelishvili and
Marc{-}Thorsten H{\"{u}}tt},
title = {Analog regulation of metabolic demand},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {40},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-40},
doi = {10.1186/1752-0509-5-40},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SonnenscheinGMH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SorokinaCDSGBBM11,
author = {Oksana Sorokina and
Florence Corellou and
David Dauvill{\'{e}}e and
Anatoly A. Sorokin and
Igor Goryanin and
Steven Ball and
Fran{\c{c}}ois{-}Yves Bouget and
Andrew J. Millar},
title = {Microarray data can predict diurnal changes of starch content in the
picoalga Ostreococcus},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {36},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-36},
doi = {10.1186/1752-0509-5-36},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SorokinaCDSGBBM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SrourYE11,
author = {Orr Srour and
Jamey D. Young and
Yonina C. Eldar},
title = {Fluxomers: a new approach for \({}^{\mbox{13}}\)C metabolic flux analysis},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {129},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-129},
doi = {10.1186/1752-0509-5-129},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SrourYE11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/StamatelosBIG11,
author = {Spyros K. Stamatelos and
Christopher J. Brinkerhoff and
Sastry S. Isukapalli and
Panos G. Georgopoulos},
title = {Mathematical model of uptake and metabolism of arsenic(III) in human
hepatocytes - Incorporation of cellular antioxidant response and threshold-dependent
behavior},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {16},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-16},
doi = {10.1186/1752-0509-5-16},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/StamatelosBIG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/StobbeHJKM11,
author = {Miranda D. Stobbe and
Sander M. Houten and
Gerbert A. Jansen and
Antoine H. C. van Kampen and
Perry D. Moerland},
title = {Critical assessment of human metabolic pathway databases: a stepping
stone for future integration},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {165},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-165},
doi = {10.1186/1752-0509-5-165},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/StobbeHJKM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SunnakerCJ11,
author = {Mikael Sunn{\aa}ker and
Gunnar Cedersund and
Mats Jirstrand},
title = {A method for zooming of nonlinear models of biochemical systems},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {140},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-140},
doi = {10.1186/1752-0509-5-140},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SunnakerCJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SvenssonPFACS11,
author = {J. Peter Svensson and
Laia Pesudo and
Rebecca C. Fry and
Yeyejide A. Adeleye and
Paul L. Carmichael and
Leona D. Samson},
title = {Genomic phenotyping of the essential and non-essential yeast genome
detects novel pathways for alkylation resistance},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {157},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-157},
doi = {10.1186/1752-0509-5-157},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SvenssonPFACS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SzederkenyiBA11,
author = {G{\'{a}}bor Szederk{\'{e}}nyi and
Julio R. Banga and
Antonio A. Alonso},
title = {Inference of complex biological networks: distinguishability issues
and optimization-based solutions},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {177},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-177},
doi = {10.1186/1752-0509-5-177},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SzederkenyiBA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TakemotoNT11,
author = {Kazuhiro Takemoto and
Tatsuya Niwa and
Hideki Taguchi},
title = {Difference in the distribution pattern of substrate enzymes in the
metabolic network of Escherichia coli, according to chaperonin requirement},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {98},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-98},
doi = {10.1186/1752-0509-5-98},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TakemotoNT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TashkovaKSTD11,
author = {Katerina Tashkova and
Peter Korosec and
Jurij Silc and
Ljupco Todorovski and
Saso Dzeroski},
title = {Parameter estimation with bio-inspired meta-heuristic optimization:
modeling the dynamics of endocytosis},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {159},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-159},
doi = {10.1186/1752-0509-5-159},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TashkovaKSTD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TeixeiraDCSCCSACO11,
author = {Ana P. Teixeira and
Jo{\~{a}}o M. L. Dias and
Nuno Carinhas and
Marcos Sousa and
Jos{\'{e}} Clemente and
Ant{\'{o}}nio Cunha and
Moritz von Stosch and
Paula M. Alves and
Manuel J. T. Carrondo and
Rui Oliveira},
title = {Cell functional enviromics: Unravelling the function of environmental
factors},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {92},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-92},
doi = {10.1186/1752-0509-5-92},
timestamp = {Fri, 19 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TeixeiraDCSCCSACO11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ThieleHSFABCCFHKLMMORRSSSSSTZPAB11,
author = {Ines Thiele and
Daniel R. Hyduke and
Benjamin Steeb and
Guy Fankam and
Douglas K. Allen and
Susanna Bazzani and
Pep Charusanti and
Feng{-}Chi Chen and
Ronan M. T. Fleming and
Chao A. Hsiung and
Sigrid C. J. De Keersmaecker and
Yu{-}Chieh Liao and
Kathleen Marchal and
Monica L. Mo and
Emre {\"{O}}zdemir and
Anu Raghunathan and
Jennifer L. Reed and
Sook{-}Il Shin and
Sara Sigurbj{\"{o}}rnsd{\'{o}}ttir and
Jonas Steinmann and
Suresh Sudarsan and
Neil Swainston and
Inge M. Thijs and
Karsten Zengler and
Bernhard O. Palsson and
Joshua N. Adkins and
Dirk Bumann},
title = {A community effort towards a knowledge-base and mathematical model
of the human pathogen Salmonella Typhimurium {LT2}},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {8},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-8},
doi = {10.1186/1752-0509-5-8},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ThieleHSFABCCFHKLMMORRSSSSSTZPAB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TiemannVHR11,
author = {Christian A. Tiemann and
Joep Vanlier and
Peter A. J. Hilbers and
Natal A. W. van Riel},
title = {Parameter adaptations during phenotype transitions in progressive
diseases},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {174},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-174},
doi = {10.1186/1752-0509-5-174},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TiemannVHR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TondelIGVHOM11,
author = {Kristin T{\o}ndel and
Ulf G. Indahl and
Arne B. Gjuvsland and
Jon Olav Vik and
Peter J. Hunter and
Stig W. Omholt and
Harald Martens},
title = {Hierarchical Cluster-based Partial Least Squares Regression {(HC-PLSR)}
is an efficient tool for metamodelling of nonlinear dynamic models},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {90},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-90},
doi = {10.1186/1752-0509-5-90},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TondelIGVHOM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ToniJHBS11,
author = {Tina Toni and
Goran N. Jovanovic and
Maxime Huvet and
Martin Buck and
Michael P. H. Stumpf},
title = {From qualitative data to quantitative models: analysis of the phage
shock protein stress response in Escherichia coli},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {69},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-69},
doi = {10.1186/1752-0509-5-69},
timestamp = {Fri, 05 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/ToniJHBS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Tran0ZZXLDSZ11,
author = {Linh M. Tran and
Bin Zhang and
Zhan Zhang and
Chunsheng Zhang and
Tao Xie and
John R. Lamb and
Hongyue Dai and
Eric E. Schadt and
Jun Zhu},
title = {Inferring causal genomic alterations in breast cancer using gene expression
data},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {121},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-121},
doi = {10.1186/1752-0509-5-121},
timestamp = {Fri, 01 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/Tran0ZZXLDSZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TsengLCHJ11,
author = {Chien{-}Wei Tseng and
Chen{-}Ching Lin and
Chiung{-}Nien Chen and
Hsuan{-}Cheng Huang and
Hsueh{-}Fen Juan},
title = {Integrative network analysis reveals active microRNAs and their functions
in gastric cancer},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {99},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-99},
doi = {10.1186/1752-0509-5-99},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TsengLCHJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TzamaliPTR11,
author = {Eleftheria Tzamali and
Panayiota Poirazi and
Ioannis G. Tollis and
Martin Reczko},
title = {A computational exploration of bacterial metabolic diversity identifying
metabolic interactions and growth-efficient strain communities},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {167},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-167},
doi = {10.1186/1752-0509-5-167},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TzamaliPTR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ValgepeaAV11,
author = {Kaspar Valgepea and
Kaarel Adamberg and
Raivo Vilu},
title = {Decrease of energy spilling in Escherichia coli continuous cultures
with rising specific growth rate and carbon wasting},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {106},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-106},
doi = {10.1186/1752-0509-5-106},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ValgepeaAV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/VargasPPA11,
author = {Felipe A. Vargas and
Francisco Pizarro and
Jose Ricardo P{\'{e}}rez{-}Correa and
Eduardo Agosin},
title = {Expanding a dynamic flux balance model of yeast fermentation to genome-scale},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {75},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-75},
doi = {10.1186/1752-0509-5-75},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/VargasPPA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/VempatiPG11,
author = {Prakash Vempati and
Aleksander S. Popel and
Feilim Mac Gabhann},
title = {Formation of {VEGF} isoform-specific spatial distributions governing
angiogenesis: computational analysis},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {59},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-59},
doi = {10.1186/1752-0509-5-59},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/VempatiPG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Verwoerd11,
author = {Wynand S. Verwoerd},
title = {A new computational method to split large biochemical networks into
coherent subnets},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {25},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-25},
doi = {10.1186/1752-0509-5-25},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Verwoerd11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WaltemathABHKMMNSSN11,
author = {Dagmar Waltemath and
Richard R. Adams and
Frank T. Bergmann and
Michael Hucka and
Fedor A. Kolpakov and
Andrew K. Miller and
Ion I. Moraru and
David P. Nickerson and
Sven Sahle and
Jacky L. Snoep and
Nicolas Le Nov{\`{e}}re},
title = {Reproducible computational biology experiments with {SED-ML} - The
Simulation Experiment Description Markup Language},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {198},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-198},
doi = {10.1186/1752-0509-5-198},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WaltemathABHKMMNSSN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WangA11,
author = {Rui{-}Sheng Wang and
R{\'{e}}ka Albert},
title = {Elementary signaling modes predict the essentiality of signal transduction
network components},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {44},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-44},
doi = {10.1186/1752-0509-5-44},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WangA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WangHCHZWL11,
author = {Jin Wang and
Martin Haubrock and
Kunming Cao and
Xu Hua and
Chenyu Zhang and
Edgar Wingender and
Jie Li},
title = {Regulatory coordination of clustered microRNAs based on microRNA-transcription
factor regulatory network},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {199},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-199},
doi = {10.1186/1752-0509-5-199},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WangHCHZWL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WangPHKWBM11,
author = {Yunjiao Wang and
Pawel Paszek and
Caroline A. Horton and
Douglas B. Kell and
Michael R. H. White and
David S. Broomhead and
Mark R. Muldoon},
title = {Interactions among oscillatory pathways in NF-kappa {B} signaling},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {23},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-23},
doi = {10.1186/1752-0509-5-23},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WangPHKWBM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WangorschBMHGDD11,
author = {Gaby Wangorsch and
Elke Butt and
Regina Mark and
Katharina Hubertus and
J{\"{o}}rg Geiger and
Thomas Dandekar and
Marcus T. Dittrich},
title = {Time-resolved in silico modeling of fine-tuned cAMP signaling in platelets:
feedback loops, titrated phosphorylations and pharmacological modulation},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {178},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-178},
doi = {10.1186/1752-0509-5-178},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WangorschBMHGDD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WeberB11,
author = {Marc Weber and
Javier Buceta},
title = {Noise regulation by quorum sensing in low mRNA copy number systems},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {11},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-11},
doi = {10.1186/1752-0509-5-11},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WeberB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WeiHZLTJLTC11,
author = {XiaoNa Wei and
Bu{-}Cong Han and
Jing{-}Xian Zhang and
X. H. Liu and
C. Y. Tan and
Y. Y. Jiang and
Boon Chuan Low and
Bruce Tidor and
Yu Zong Chen},
title = {An Integrated Mathematical Model of Thrombin-, Histamine-and VEGF-Mediated
Signalling in Endothelial Permeability},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {112},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-112},
doi = {10.1186/1752-0509-5-112},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WeiHZLTJLTC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WestraSFGCHEHMMLPTVHWMPDH11,
author = {Jurjen Willem Westra and
Walter K. Schlage and
Brian P. Frushour and
Stephan Gebel and
Natalie L. Catlett and
Wan{-}Jiang Han and
Sean F. Eddy and
Arnd Hengstermann and
Andrea L. Matthews and
Carole Mathis and
Rosemarie B. Lichtner and
Carine Poussin and
Marja Talikka and
Emilija Veljkovic and
Aaron A. Van Hooser and
Benjamin Wong and
Michael J. Maria and
Manuel C. Peitsch and
Renee Deehan and
Julia Hoeng},
title = {Construction of a computable cell proliferation network focused on
non-diseased lung cells},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {105},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-105},
doi = {10.1186/1752-0509-5-105},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WestraSFGCHEHMMLPTVHWMPDH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WolkenhauerSM11,
author = {Olaf Wolkenhauer and
Darryl Shibata and
Mihajlo D. Mesarovic},
title = {A stem cell niche dominance theorem},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {4},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-4},
doi = {10.1186/1752-0509-5-4},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WolkenhauerSM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WuCHWGV11,
author = {Rongling Wu and
Jiguo Cao and
Zhongwen Huang and
Zhong Wang and
Junyi Gai and
C. Eduardo Vallejos},
title = {Systems mapping: how to improve the genetic mapping of complex traits
through design principles of biological systems},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {84},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-84},
doi = {10.1186/1752-0509-5-84},
timestamp = {Tue, 14 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WuCHWGV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WuVV11,
author = {Jialiang Wu and
Brani Vidakovic and
Eberhard O. Voit},
title = {Constructing stochastic models from deterministic process equations
by propensity adjustment},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {187},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-187},
doi = {10.1186/1752-0509-5-187},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WuVV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WuWC11,
author = {Wu Hsiung Wu and
Feng Sheng Wang and
Maw{-}Shang Chang},
title = {Multi-objective optimization of enzyme manipulations in metabolic
networks considering resilience effects},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {145},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-145},
doi = {10.1186/1752-0509-5-145},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WuWC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WynnVSGM11,
author = {Michelle L. Wynn and
Alejandra C. Ventura and
Jacques{-}A. Sepulchre and
H{\'{e}}ctor J. Garc{\'{\i}}a and
Sof{\'{\i}}a D. Merajver},
title = {Kinase inhibitors can produce off-target effects and activate linked
pathways by retroactivity},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {156},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-156},
doi = {10.1186/1752-0509-5-156},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WynnVSGM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/XiaoDMMPWH11,
author = {Xiaolin Xiao and
Neil Dawson and
Lynsey MacIntyre and
Brian J. Morris and
Judith A. Pratt and
David G. Watson and
Desmond J. Higham},
title = {Exploring metabolic pathway disruption in the subchronic phencyclidine
model of schizophrenia with the Generalized Singular Value Decomposition},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {72},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-72},
doi = {10.1186/1752-0509-5-72},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/XiaoDMMPWH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YaoHLL11,
author = {Xin Yao and
Han Hao and
Yanda Li and
Shao Li},
title = {Modularity-based credible prediction of disease genes and detection
of disease subtypes on the phenotype-gene heterogeneous network},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {79},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-79},
doi = {10.1186/1752-0509-5-79},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YaoHLL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YdeMJKT11,
author = {Pernille Yde and
Benedicty Mengel and
Mogens H. Jensen and
Sandeep Krishna and
Ala Trusina},
title = {Modeling the NF-{\(\kappa\)}B mediated inflammatory response predicts
cytokine waves in tissue},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {115},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-115},
doi = {10.1186/1752-0509-5-115},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YdeMJKT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YoonAMGSHA11,
author = {Hyunjin Yoon and
Charles Ansong and
Jason E. McDermott and
Marina A. Gritsenko and
Richard D. Smith and
Fred Heffron and
Joshua N. Adkins},
title = {Systems analysis of multiple regulator perturbations allows discovery
of virulence factors in Salmonella},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {100},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-100},
doi = {10.1186/1752-0509-5-100},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YoonAMGSHA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YouSRBC11,
author = {Tao You and
Ian Stansfield and
M. Carmen Romano and
Alistair J. P. Brown and
George M. Coghill},
title = {Analysing {GCN4} translational control in yeast by stochastic chemical
kinetics modelling and simulation},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {131},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-131},
doi = {10.1186/1752-0509-5-131},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YouSRBC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Zamora-SilleroHISW11,
author = {El{\'{\i}}as Zamora{-}Sillero and
Marc Hafner and
Ariane Ibig and
J{\"{o}}rg Stelling and
Andreas Wagner},
title = {Efficient characterization of high-dimensional parameter spaces for
systems biology},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {142},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-142},
doi = {10.1186/1752-0509-5-142},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Zamora-SilleroHISW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhanY11,
author = {Choujun Zhan and
Lam Fat Yeung},
title = {Parameter estimation in systems biology models using spline approximation},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {14},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-14},
doi = {10.1186/1752-0509-5-14},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhanY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhangCSJ11,
author = {Wangshu Zhang and
Yong Chen and
Fengzhu Sun and
Rui Jiang},
title = {DomainRBF: a Bayesian regression approach to the prioritization of
candidate domains for complex diseases},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {55},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-55},
doi = {10.1186/1752-0509-5-55},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhangCSJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhangJCGW11,
author = {Luwen Zhang and
Xiangchun Ju and
Yumin Cheng and
Xiuyun Guo and
Tieqiao Wen},
title = {Identifying Tmem59 related gene regulatory network of mouse neural
stem cell from a compendium of expression profiles},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {152},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-152},
doi = {10.1186/1752-0509-5-152},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhangJCGW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhouLWWW11,
author = {Wei Zhou and
Yan Li and
Xia Wang and
Lianqi Wu and
Yonghua Wang},
title = {MiR-206-mediated dynamic mechanism of the mammalian circadian clock},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {141},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-141},
doi = {10.1186/1752-0509-5-141},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhouLWWW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZinmanZB11,
author = {Guy E. Zinman and
Shan Zhong and
Ziv Bar{-}Joseph},
title = {Biological interaction networks are conserved at the module level},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {134},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-134},
doi = {10.1186/1752-0509-5-134},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZinmanZB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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