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@article{DBLP:journals/bmcbi/AbouelhodaKO08,
author = {Mohamed Ibrahim Abouelhoda and
Stefan Kurtz and
Enno Ohlebusch},
title = {CoCoNUT: an efficient system for the comparison and analysis of genomes},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-476},
doi = {10.1186/1471-2105-9-476},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AbouelhodaKO08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AllmerKH08,
author = {Jens Allmer and
Sebastian Kuhlgert and
Michael Hippler},
title = {2DB: a Proteomics database for storage, analysis, presentation, and
retrieval of information from mass spectrometric experiments},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-302},
doi = {10.1186/1471-2105-9-302},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/AllmerKH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AmigoSPC08,
author = {Jorge Amigo and
Antonio Salas and
Christopher Phillips and
{\'{A}}ngel Carracedo},
title = {SPSmart: adapting population based {SNP} genotype databases for fast
and comprehensive web access},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-428},
doi = {10.1186/1471-2105-9-428},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/AmigoSPC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AndronescuBHC08,
author = {Mirela Andronescu and
Vera Bereg and
Holger H. Hoos and
Anne Condon},
title = {{RNA} {STRAND:} The {RNA} Secondary Structure and Statistical Analysis
Database},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-340},
doi = {10.1186/1471-2105-9-340},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AndronescuBHC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AngaricaPVCC08,
author = {Vladimir Espinosa Angarica and
Abel Gonz{\'{a}}lez P{\'{e}}rez and
Ana Tereza Ribeiro de Vasconcelos and
Julio Collado{-}Vides and
Bruno Contreras{-}Moreira},
title = {Prediction of {TF} target sites based on atomistic models of protein-DNA
complexes},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-436},
doi = {10.1186/1471-2105-9-436},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AngaricaPVCC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AngeliniCCMP08,
author = {Claudia Angelini and
Luisa Cutillo and
Daniela De Canditiis and
Margherita Mutarelli and
Marianna Pensky},
title = {{BATS:} a Bayesian user-friendly software for Analyzing Time Series
microarray experiments},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-415},
doi = {10.1186/1471-2105-9-415},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/AngeliniCCMP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AnsariSGM08,
author = {Mohd. Zeeshan Ansari and
Jyoti Sharma and
Rajesh S. Gokhale and
Debasisa Mohanty},
title = {\emph{In silico }analysis of methyltransferase domains involved in
biosynthesis of secondary metabolites},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-454},
doi = {10.1186/1471-2105-9-454},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/AnsariSGM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AntaoLLBL08,
author = {Tiago Antao and
Ana Lopes and
Ricardo J. Lopes and
Albano Beja{-}Pereira and
Gordon Luikart},
title = {{LOSITAN:} {A} workbench to detect molecular adaptation based on a
\emph{F}\({}_{\mbox{\emph{st}}}\)-outlier method},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-323},
doi = {10.1186/1471-2105-9-323},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AntaoLLBL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AnwarBJHSKW08,
author = {Firoz Anwar and
Syed Murtuza Baker and
Taskeed Jabid and
Md. Mehedi Hasan and
Mohammad Shoyaib and
Haseena Khan and
Ray Walshe},
title = {Pol {II} promoter prediction using characteristic 4-mer motifs: a
machine learning approach},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-414},
doi = {10.1186/1471-2105-9-414},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/AnwarBJHSKW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AraguesSO08,
author = {Ramon Aragues and
Chris Sander and
Baldo Oliva},
title = {Predicting cancer involvement of genes from heterogeneous data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-172},
doi = {10.1186/1471-2105-9-172},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AraguesSO08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ArmstrongJZ08,
author = {Don L. Armstrong and
Chaim O. Jacob and
Raphael Zidovetzki},
title = {Function2Gene: {A} gene selection tool to increase the power of genetic
association studies by utilizing public databases and expert knowledge},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-311},
doi = {10.1186/1471-2105-9-311},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ArmstrongJZ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ArmutluOYKT08,
author = {Pelin Armutlu and
Muhittin Emre {\"{O}}zdemir and
Fadime {\"{U}}ney Y{\"{u}}ksektepe and
I. Halil Kavakli and
Metin T{\"{u}}rkay},
title = {Classification of drug molecules considering their IC\({}_{\mbox{50
}}\)values using mixed-integer linear programming based hyper-boxes
method},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-411},
doi = {10.1186/1471-2105-9-411},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ArmutluOYKT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ArtziKS08,
author = {Shay Artzi and
Adam Kiezun and
Noam Shomron},
title = {miRNAminer: {A} tool for homologous microRNA gene search},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-39},
doi = {10.1186/1471-2105-9-39},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ArtziKS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ArvidssonKRM08,
author = {Samuel Arvidsson and
Miroslaw Kwasniewski and
Diego Mauricio Ria{\~{n}}o{-}Pach{\'{o}}n and
Bernd Mueller{-}Roeber},
title = {QuantPrime - a flexible tool for reliable high-throughput primer design
for quantitative {PCR}},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-465},
doi = {10.1186/1471-2105-9-465},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ArvidssonKRM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AstrandMR08,
author = {Magnus {\AA}strand and
Petter Mostad and
Mats Rudemo},
title = {Empirical Bayes models for multiple probe type microarrays at the
probe level},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-156},
doi = {10.1186/1471-2105-9-156},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AstrandMR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AuliacFGd08,
author = {C{\'{e}}dric Auliac and
Vincent Frouin and
Xavier Gidrol and
Florence d'Alch{\'{e}}{-}Buc},
title = {Evolutionary approaches for the reverse-engineering of gene regulatory
networks: {A} study on a biologically realistic dataset},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-91},
doi = {10.1186/1471-2105-9-91},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AuliacFGd08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AylingB08,
author = {Sarah C. Ayling and
Terence A. Brown},
title = {Novel methodology for construction and pruning of quasi-median networks},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-115},
doi = {10.1186/1471-2105-9-115},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AylingB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BaderAO08,
author = {Martin Bader and
Mohamed Ibrahim Abouelhoda and
Enno Ohlebusch},
title = {A fast algorithm for the multiple genome rearrangement problem with
weighted reversals and transpositions},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-516},
doi = {10.1186/1471-2105-9-516},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BaderAO08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Barbosa-SilvaSSO08,
author = {Adriano Barbosa{-}Silva and
Venkata P. Satagopam and
Reinhard Schneider and
Jos{\'{e}} Miguel Ortega},
title = {Clustering of cognate proteins among distinct proteomes derived from
multiple links to a single seed sequence},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-141},
doi = {10.1186/1471-2105-9-141},
timestamp = {Wed, 14 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Barbosa-SilvaSSO08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BartonACHHKMSSTTADGSB08,
author = {Geraint Barton and
J. C. Abbott and
Norie Chiba and
D. W. Huang and
Y. Huang and
Marko Krznaric and
J. Mack{-}Smith and
A. Saleem and
B. T. Sherman and
Brijesh Tiwari and
Christopher D. Tomlinson and
Timothy J. Aitman and
John Darlington and
Laurence Game and
Michael J. E. Sternberg and
Sarah A. Butcher},
title = {{EMAAS:} An extensible grid-based Rich Internet Application for microarray
data analysis and management},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-493},
doi = {10.1186/1471-2105-9-493},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BartonACHHKMSSTTADGSB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BastienM08,
author = {Olivier Bastien and
Eric Mar{\'{e}}chal},
title = {Evolution of biological sequences implies an extreme value distribution
of type {I} for both global and local pairwise alignment scores},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-332},
doi = {10.1186/1471-2105-9-332},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BastienM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BatschNFULLPLSG08,
author = {Anke Batsch and
Andrea Noetel and
Christian Fork and
Anita Urban and
Daliborka Lazic and
Tina Lucas and
Julia Pietsch and
Andreas Lazar and
Edgar Sch{\"{o}}mig and
Dirk Gr{\"{u}}ndemann},
title = {Simultaneous fitting of real-time {PCR} data with efficiency of amplification
modeled as Gaussian function of target fluorescence},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-95},
doi = {10.1186/1471-2105-9-95},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BatschNFULLPLSG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BatyJPSB08,
author = {Florent Baty and
Daniel Jaeger and
Frank Preiswerk and
Martin M. Schumacher and
Martin H. Brutsche},
title = {Stability of gene contributions and identification of outliers in
multivariate analysis of microarray data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-289},
doi = {10.1186/1471-2105-9-289},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BatyJPSB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BauerB08,
author = {Denis C. Bauer and
Timothy L. Bailey},
title = {Studying the functional conservation of cis-regulatory modules and
their transcriptional output},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-220},
doi = {10.1186/1471-2105-9-220},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BauerB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BauerSS08,
author = {Mark Bauer and
Sheldon M. Schuster and
Khalid Sayood},
title = {The Average Mutual Information Profile as a Genomic Signature},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-48},
doi = {10.1186/1471-2105-9-48},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BauerSS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BekaertIAB08,
author = {Micha{\"{e}}l Bekaert and
Ivaylo P. Ivanov and
John F. Atkins and
Pavel V. Baranov},
title = {Ornithine decarboxylase antizyme finder {(OAF):} Fast and reliable
detection of antizymes with frameshifts in mRNAs},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-178},
doi = {10.1186/1471-2105-9-178},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BekaertIAB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BernardesFV08,
author = {Juliana S. Bernardes and
Jorge H. Fernandez and
Ana Tereza Ribeiro de Vasconcelos},
title = {Structural descriptor database: a new tool for sequence-based functional
site prediction},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-492},
doi = {10.1186/1471-2105-9-492},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BernardesFV08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BernhartHWGS08,
author = {Stephan H. Bernhart and
Ivo L. Hofacker and
Sebastian Will and
Andreas R. Gruber and
Peter F. Stadler},
title = {RNAalifold: improved consensus structure prediction for {RNA} alignments},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-474},
doi = {10.1186/1471-2105-9-474},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BernhartHWGS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BethardLMH08,
author = {Steven Bethard and
Zhiyong Lu and
James H. Martin and
Lawrence Hunter},
title = {Semantic role labeling for protein transport predicates},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-277},
doi = {10.1186/1471-2105-9-277},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BethardLMH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BettencourtSFCPPSMSBB08,
author = {Bruno F. Bettencourt and
Margarida R. Santos and
Raquel N. Fialho and
Ana R. Couto and
Maria J. Peixoto and
Jo{\~{a}}o P. Pinheiro and
H{\'{e}}lder Sp{\'{\i}}nola and
Marian G. Mora and
Cristina Santos and
Ant{\'{o}}nio Brehm and
J{\'{a}}come Bruges{-}Armas},
title = {Evaluation of two methods for computational {HLA} haplotypes inference
using a real dataset},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-68},
doi = {10.1186/1471-2105-9-68},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BettencourtSFCPPSMSBB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BhattacharyaLLGWSF08,
author = {Arnab Bhattacharya and
Sasha Levy and
Adria LeBoeuf and
Michelle Gaylord and
Leslie Wilson and
Ambuj K. Singh and
Stuart C. Feinstein},
title = {A general modeling and visualization tool for comparing different
members of a group: application to studying tau-mediated regulation
of microtubule dynamics},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-339},
doi = {10.1186/1471-2105-9-339},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BhattacharyaLLGWSF08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BinderS08,
author = {Harald Binder and
Martin Schumacher},
title = {Allowing for mandatory covariates in boosting estimation of sparse
high-dimensional survival models},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-14},
doi = {10.1186/1471-2105-9-14},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BinderS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BiswasSA08,
author = {Shameek Biswas and
John D. Storey and
Joshua M. Akey},
title = {Mapping gene expression quantitative trait loci by singular value
decomposition and independent component analysis},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-244},
doi = {10.1186/1471-2105-9-244},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BiswasSA08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BittonOCM08,
author = {Danny A. Bitton and
Michal J. Okoniewski and
Yvonne Connolly and
Crispin J. Miller},
title = {Exon level integration of proteomics and microarray data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-118},
doi = {10.1186/1471-2105-9-118},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BittonOCM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BlangiardoR08,
author = {Marta Blangiardo and
Sylvia Richardson},
title = {A Bayesian calibration model for combining different pre-processing
methods in Affymetrix chips},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-512},
doi = {10.1186/1471-2105-9-512},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BlangiardoR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BleakleyLB08,
author = {Kevin Bleakley and
Marie{-}Paule Lefranc and
G{\'{e}}rard Biau},
title = {Recovering probabilities for nucleotide trimming processes for {T}
cell receptor {TRA} and {TRG} {V-J} junctions analyzed with {IMGT}
tools},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-408},
doi = {10.1186/1471-2105-9-408},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BleakleyLB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BlomHHSRK08,
author = {Evert{-}Jan Blom and
Sacha A. F. T. van Hijum and
Klaas J. Hofstede and
Remko Silvis and
Jos B. T. M. Roerdink and
Oscar P. Kuipers},
title = {{DISCLOSE} : DISsection of CLusters Obtained by SEries of transcriptome
data using functional annotations and putative transcription factor
binding sites},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-535},
doi = {10.1186/1471-2105-9-535},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BlomHHSRK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BogojeskaLR08,
author = {Jasmina Bogojeska and
Thomas Lengauer and
J{\"{o}}rg Rahnenf{\"{u}}hrer},
title = {Stability analysis of mixtures of mutagenetic trees},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-165},
doi = {10.1186/1471-2105-9-165},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BogojeskaLR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BohnebeckLKG08,
author = {Uta Bohnebeck and
Thierry Lombardot and
Renzo Kottmann and
Frank Oliver Gl{\"{o}}ckner},
title = {MetaMine - {A} tool to detect and analyse gene patterns in their environmental
context},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-459},
doi = {10.1186/1471-2105-9-459},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BohnebeckLKG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BordnerG08,
author = {Andrew J. Bordner and
Andrey A. Gorin},
title = {Comprehensive inventory of protein complexes in the Protein Data Bank
from consistent classification of interfaces},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-234},
doi = {10.1186/1471-2105-9-234},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BordnerG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BorozanCPHEKZM08,
author = {Ivan Borozan and
Limin Chen and
Bryan Paeper and
Jenny E. Heathcote and
Aled M. Edwards and
Michael A. Katze and
Zhaolei Zhang and
Ian D. McGilvray},
title = {{MAID} : An effect size based model for microarray data integration
across laboratories and platforms},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-305},
doi = {10.1186/1471-2105-9-305},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BorozanCPHEKZM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BougouffaW08,
author = {Salim Bougouffa and
Jim Warwicker},
title = {Volume-based solvation models out-perform area-based models in combined
studies of wild-type and mutated protein-protein interfaces},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-448},
doi = {10.1186/1471-2105-9-448},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BougouffaW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BoyleCKS08,
author = {John Boyle and
Christopher C. Cavnor and
Sarah A. Killcoyne and
Ilya Shmulevich},
title = {Systems biology driven software design for the research enterprise},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-295},
doi = {10.1186/1471-2105-9-295},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BoyleCKS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BraistedKVMRWHFSFPP08,
author = {John C. Braisted and
Srilatha Kuntumalla and
Christine Vogel and
Edward M. Marcotte and
Alan R. Rodrigues and
Rong Wang and
Shih{-}Ting Huang and
Erik S. Ferlanti and
Alexander I. Saeed and
Robert D. Fleischmann and
Scott N. Peterson and
Rembert Pieper},
title = {The {APEX} Quantitative Proteomics Tool: Generating protein quantitation
estimates from {LC-MS/MS} proteomics results},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-529},
doi = {10.1186/1471-2105-9-529},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BraistedKVMRWHFSFPP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BraunCP08,
author = {Rosemary Braun and
Leslie Cope and
Giovanni Parmigiani},
title = {Identifying differential correlation in gene/pathway combinations},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-488},
doi = {10.1186/1471-2105-9-488},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BraunCP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BraunsteinMP08,
author = {Alfredo Braunstein and
Roberto Mulet and
Andrea Pagnani},
title = {Estimating the size of the solution space of metabolic networks},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-240},
doi = {10.1186/1471-2105-9-240},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BraunsteinMP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BrehelinDG08,
author = {Laurent Br{\'{e}}h{\'{e}}lin and
Jean{-}Fran{\c{c}}ois Dufayard and
Olivier Gascuel},
title = {PlasmoDraft: a database of \emph{Plasmodium falciparum }gene function
predictions based on postgenomic data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-440},
doi = {10.1186/1471-2105-9-440},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BrehelinDG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BrickP08,
author = {Kevin Brick and
Elisabetta Pizzi},
title = {A novel series of compositionally biased substitution matrices for
comparing \emph{Plasmodium }proteins},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-236},
doi = {10.1186/1471-2105-9-236},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BrickP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BrilliMFBLF08,
author = {Matteo Brilli and
Alessio Mengoni and
Marco Fondi and
Marco Bazzicalupo and
Pietro Li{\`{o}} and
Renato Fani},
title = {Analysis of plasmid genes by phylogenetic profiling and visualization
of homology relationships using Blast2Network},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-551},
doi = {10.1186/1471-2105-9-551},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BrilliMFBLF08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BrockSBLT08,
author = {Guy N. Brock and
John R. Shaffer and
Richard E. Blakesley and
Meredith J. Lotz and
George C. Tseng},
title = {Which missing value imputation method to use in expression profiles:
a comparative study and two selection schemes},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-12},
doi = {10.1186/1471-2105-9-12},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BrockSBLT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Browning08,
author = {Brian L. Browning},
title = {{PRESTO:} Rapid calculation of order statistic distributions and multiple-testing
adjusted P-values via permutation for one and two-stage genetic association
studies},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-309},
doi = {10.1186/1471-2105-9-309},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Browning08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BrusniakBCCEGLLMSVZAW08,
author = {Mi{-}Youn K. Brusniak and
Bernd Bodenmiller and
David S. Campbell and
Kelly Cooke and
James Eddes and
Andrew Garbutt and
Hollis Lau and
Simon Letarte and
Lukas N. Mueller and
Vagisha Sharma and
Olga Vitek and
Ning Zhang and
Ruedi Aebersold and
Julian D. Watts},
title = {Corra: Computational framework and tools for {LC-MS} discovery and
targeted mass spectrometry-based proteomics},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-542},
doi = {10.1186/1471-2105-9-542},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BrusniakBCCEGLLMSVZAW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BryanBC08,
author = {Kenneth Bryan and
Lorraine Brennan and
Padraig Cunningham},
title = {MetaFIND: {A} feature analysis tool for metabolomics data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-470},
doi = {10.1186/1471-2105-9-470},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BryanBC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BundschusDSTK08,
author = {Markus Bundschus and
Math{\"{a}}us Dejori and
Martin Stetter and
Volker Tresp and
Hans{-}Peter Kriegel},
title = {Extraction of semantic biomedical relations from text using conditional
random fields},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-207},
doi = {10.1186/1471-2105-9-207},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BundschusDSTK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BuschLABS08,
author = {Marcel Schmidt am Busch and
Anne Lopes and
Najette Amara and
Christine Bathelt and
Thomas Simonson},
title = {Testing the Coulomb/Accessible Surface Area solvent model for protein
stability, ligand binding, and protein design},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-148},
doi = {10.1186/1471-2105-9-148},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BuschLABS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BushEDMR08,
author = {William S. Bush and
Todd L. Edwards and
Scott M. Dudek and
Brett A. McKinney and
Marylyn D. Ritchie},
title = {Alternative contingency table measures improve the power and detection
of multifactor dimensionality reduction},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-238},
doi = {10.1186/1471-2105-9-238},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BushEDMR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BylesjoRNHT08,
author = {Max Bylesj{\"{o}} and
Mattias Rantalainen and
Jeremy K. Nicholson and
Elaine Holmes and
Johan Trygg},
title = {{K-OPLS} package: Kernel-based orthogonal projections to latent structures
for prediction and interpretation in feature space},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-106},
doi = {10.1186/1471-2105-9-106},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BylesjoRNHT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BystroffW08,
author = {Christopher Bystroff and
Bobbie{-}Jo M. Webb{-}Robertson},
title = {Pairwise covariance adds little to secondary structure prediction
but improves the prediction of non-canonical local structure},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-429},
doi = {10.1186/1471-2105-9-429},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BystroffW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CaffreyLM08,
author = {Daniel R. Caffrey and
Elizabeth A. Lunney and
Deborah J. Moshinsky},
title = {Prediction of specificity-determining residues for small-molecule
kinase inhibitors},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-491},
doi = {10.1186/1471-2105-9-491},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CaffreyLM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CairnsPSTBSB08,
author = {David A. Cairns and
David N. Perkins and
Anthea J. Stanley and
Douglas Thompson and
Jennifer H. Barrett and
Peter J. Selby and
Rosamonde E. Banks},
title = {Integrated multi-level quality control for proteomic profiling studies
using mass spectrometry},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-519},
doi = {10.1186/1471-2105-9-519},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CairnsPSTBSB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CakmakO08,
author = {Ali Cakmak and
Gultekin {\"{O}}zsoyoglu},
title = {Discovering gene annotations in biomedical text databases},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-143},
doi = {10.1186/1471-2105-9-143},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CakmakO08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CalzaVP08,
author = {Stefano Calza and
Davide Valentini and
Yudi Pawitan},
title = {Normalization of oligonucleotide arrays based on the least-variant
set of genes},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-140},
doi = {10.1186/1471-2105-9-140},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CalzaVP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Campagne08,
author = {Fabien Campagne},
title = {Objective and automated protocols for the evaluation of biomedical
search engines using No Title Evaluation protocols},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-132},
doi = {10.1186/1471-2105-9-132},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Campagne08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CardonaRV08,
author = {Gabriel Cardona and
Francesc Rossell{\'{o}} and
Gabriel Valiente},
title = {A perl package and an alignment tool for phylogenetic networks},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-175},
doi = {10.1186/1471-2105-9-175},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CardonaRV08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CardonaRV08a,
author = {Gabriel Cardona and
Francesc Rossell{\'{o}} and
Gabriel Valiente},
title = {Extended Newick: it is time for a standard representation of phylogenetic
networks},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-532},
doi = {10.1186/1471-2105-9-532},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CardonaRV08a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CarterMP08,
author = {Kim W. Carter and
Pamela A. McCaskie and
Lyle J. Palmer},
title = {SimHap {GUI:} An intuitive graphical user interface for genetic association
analysis},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-557},
doi = {10.1186/1471-2105-9-557},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CarterMP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Carvajal-Rodriguez08,
author = {Antonio Carvajal{-}Rodr{\'{\i}}guez},
title = {{GENOMEPOP:} {A} program to simulate genomes in populations},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-223},
doi = {10.1186/1471-2105-9-223},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Carvajal-Rodriguez08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CarvalhoFCYB08,
author = {Paulo C. Carvalho and
Juliana S. G. Fischer and
Emily I. Chen and
John R. Yates III and
Valmir Carneiro Barbosa},
title = {PatternLab for proteomics: a tool for differential shotgun proteomics},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-316},
doi = {10.1186/1471-2105-9-316},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CarvalhoFCYB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CasimiroVFO08,
author = {Ana C. Casimiro and
Susana Vinga and
Ana T. Freitas and
Arlindo L. Oliveira},
title = {An analysis of the positional distribution of {DNA} motifs in promoter
regions and its biological relevance},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-89},
doi = {10.1186/1471-2105-9-89},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CasimiroVFO08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Chadeau-HyamHOWIB08,
author = {Marc Chadeau{-}Hyam and
Clive J. Hoggart and
Paul F. O'Reilly and
John C. Whittaker and
Maria De Iorio and
David J. Balding},
title = {Fregene: Simulation of realistic sequence-level data in populations
and ascertained samples},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-364},
doi = {10.1186/1471-2105-9-364},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Chadeau-HyamHOWIB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChagoyenCP08,
author = {Monica Chagoyen and
Jos{\'{e}} Mar{\'{\i}}a Carazo and
Alberto D. Pascual{-}Montano},
title = {Assessment of protein set coherence using functional annotations},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-444},
doi = {10.1186/1471-2105-9-444},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChagoyenCP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChaivorapolMWYRBL08,
author = {Christina Chaivorapol and
Collin Melton and
Grace Wei and
Ru{-}Fang Yeh and
Miguel Ramalho{-}Santos and
Robert Blelloch and
Hao Li},
title = {CompMoby: Comparative MobyDick for detection of cis-regulatory motifs},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-455},
doi = {10.1186/1471-2105-9-455},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChaivorapolMWYRBL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChalmelP08,
author = {Fr{\'{e}}d{\'{e}}ric Chalmel and
Michael Primig},
title = {The Annotation, Mapping, Expression and Network {(AMEN)} suite of
tools for molecular systems biology},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-86},
doi = {10.1186/1471-2105-9-86},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChalmelP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChanHHT08,
author = {Chon{-}Kit Kenneth Chan and
Arthur L. Hsu and
Saman K. Halgamuge and
Sen{-}Lin Tang},
title = {Binning sequences using very sparse labels within a metagenome},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-215},
doi = {10.1186/1471-2105-9-215},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChanHHT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChangLJYLHW08,
author = {Ting{-}Yu Chang and
Yin{-}Yi Li and
Chih{-}Hung Jen and
Tsun{-}Po Yang and
Chi{-}Hung Lin and
Ming{-}Ta Hsu and
Hsei{-}Wei Wang},
title = {easyExon - {A} Java-based {GUI} tool for processing and visualization
of Affymetrix exon array data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-432},
doi = {10.1186/1471-2105-9-432},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChangLJYLHW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChariCWBWVMNL08,
author = {Raj Chari and
Bradley P. Coe and
Craig Wedseltoft and
Marie Benetti and
Ian M. Wilson and
Emily A. Vucic and
Calum MacAulay and
Raymond T. Ng and
Wan L. Lam},
title = {SIGMA\({}^{\mbox{2}}\): {A} system for the integrative genomic multi-dimensional
analysis of cancer genomes, epigenomes, and transcriptomes},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-422},
doi = {10.1186/1471-2105-9-422},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChariCWBWVMNL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChenLAD08,
author = {Guanrao Chen and
Peter E. Larsen and
Eyad Almasri and
Yang Dai},
title = {Rank-based edge reconstruction for scale-free genetic regulatory networks},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-75},
doi = {10.1186/1471-2105-9-75},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChenLAD08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChenMTVB08,
author = {Rong Chen and
Rohan Mallelwar and
Ajit Thosar and
Shivkumar Venkatasubrahmanyam and
Atul J. Butte},
title = {GeneChaser: Identifying all biological and clinical conditions in
which genes of interest are differentially expressed},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-548},
doi = {10.1186/1471-2105-9-548},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChenMTVB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChenTSZ08,
author = {Yong{-}Zi Chen and
Yu{-}Rong Tang and
Zhi{-}Ya Sheng and
Ziding Zhang},
title = {Prediction of mucin-type O-glycosylation sites in mammalian proteins
using the composition of \emph{k}-spaced amino acid pairs},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-101},
doi = {10.1186/1471-2105-9-101},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChenTSZ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChenXWSWZHC08,
author = {Li Chen and
Jianhua Xuan and
Chen Wang and
Ie{-}Ming Shih and
Yue Joseph Wang and
Zhen Zhang and
Eric P. Hoffman and
Robert Clarke},
title = {Knowledge-guided multi-scale independent component analysis for biomarker
identification},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-416},
doi = {10.1186/1471-2105-9-416},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChenXWSWZHC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChengBF08,
author = {Tammy M. K. Cheng and
Tom L. Blundell and
Juan Fern{\'{a}}ndez{-}Recio},
title = {Structural assembly of two-domain proteins by rigid-body docking},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-441},
doi = {10.1186/1471-2105-9-441},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChengBF08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChengLSL08,
author = {Kin{-}On Cheng and
Ngai{-}Fong Law and
Wan{-}Chi Siu and
Alan Wee{-}Chung Liew},
title = {Identification of coherent patterns in gene expression data using
an efficient biclustering algorithm and parallel coordinate visualization},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-210},
doi = {10.1186/1471-2105-9-210},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChengLSL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChiapelloGCBPK08,
author = {H{\'{e}}l{\`{e}}ne Chiapello and
Annie Gendrault and
Christophe Caron and
J{\'{e}}rome Blum and
Marie{-}Agn{\`{e}}s Petit and
Meriem El Karoui},
title = {{MOSAIC:} an online database dedicated to the comparative genomics
of bacterial strains at the intra-species level},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-498},
doi = {10.1186/1471-2105-9-498},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChiapelloGCBPK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChicaLGLG08,
author = {Claudia Chica and
Alberto Labarga and
Cathryn M. Gould and
Rodrigo Lopez and
Toby J. Gibson},
title = {A tree-based conservation scoring method for short linear motifs in
multiple alignments of protein sequences},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-229},
doi = {10.1186/1471-2105-9-229},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChicaLGLG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChidCNML08,
author = {Bryan Chi and
Ronald J. deLeeuw and
Bradley P. Coe and
Raymond T. Ng and
Calum MacAulay and
Wan L. Lam},
title = {MD-SeeGH: a platform for integrative analysis of multi-dimensional
genomic data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-243},
doi = {10.1186/1471-2105-9-243},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChidCNML08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChoSRZ08,
author = {Young{-}Rae Cho and
Lei Shi and
Murali Ramanathan and
Aidong Zhang},
title = {A probabilistic framework to predict protein function from interaction
data integrated with semantic knowledge},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-382},
doi = {10.1186/1471-2105-9-382},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChoSRZ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChoiK08,
author = {Kwangmin Choi and
Sun Kim},
title = {ComPath: comparative enzyme analysis and annotation in pathway/subsystem
contexts},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-145},
doi = {10.1186/1471-2105-9-145},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChoiK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChoiYLL08,
author = {Junwon Choi and
Kyung{-}won Yang and
Tai{-}yong Lee and
Sang Yup Lee},
title = {New time-scale criteria for model simplification of bio-reaction systems},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-338},
doi = {10.1186/1471-2105-9-338},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChoiYLL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChopraKYCKL08,
author = {Pankaj Chopra and
Jaewoo Kang and
Jiong Yang and
HyungJun Cho and
Heenam Stanley Kim and
Min{-}Goo Lee},
title = {Microarray data mining using landmark gene-guided clustering},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-92},
doi = {10.1186/1471-2105-9-92},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChopraKYCKL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChristleyLM08,
author = {Scott Christley and
Neil F. Lobo and
Gregory R. Madey},
title = {Multiple organism algorithm for finding ultraconserved elements},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-15},
doi = {10.1186/1471-2105-9-15},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChristleyLM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChurbanovW08,
author = {Alexander G. Churbanov and
Stephen Winters{-}Hilt},
title = {Implementing {EM} and Viterbi algorithms for Hidden Markov Model in
linear memory},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-224},
doi = {10.1186/1471-2105-9-224},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChurbanovW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChurkinB08,
author = {Alexander Churkin and
Danny Barash},
title = {An efficient method for the prediction of deleterious multiple-point
mutations in the secondary structure of RNAs using suboptimal folding
solutions},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-222},
doi = {10.1186/1471-2105-9-222},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChurkinB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CoghlanFMFHBCS08,
author = {Avril Coghlan and
Tristan J. Fiedler and
Sheldon J. McKay and
Paul Flicek and
Todd W. Harris and
Darin Blasiar and
Lincoln D. Stein},
title = {nGASP - the nematode genome annotation assessment project},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-549},
doi = {10.1186/1471-2105-9-549},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CoghlanFMFHBCS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CoranderMST08,
author = {Jukka Corander and
Pekka Marttinen and
Jukka Sir{\'{e}}n and
Jing Tang},
title = {Enhanced Bayesian modelling in {BAPS} software for learning genetic
structures of populations},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-539},
doi = {10.1186/1471-2105-9-539},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CoranderMST08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CorradiFPST08,
author = {Luca Corradi and
Marco Fato and
Ivan Porro and
Silvia Scaglione and
Livia Torterolo},
title = {A Web-based and Grid-enabled dChip version for the analysis of large
sets of gene expression data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-480},
doi = {10.1186/1471-2105-9-480},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CorradiFPST08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CriscuoloG08,
author = {Alexis Criscuolo and
Olivier Gascuel},
title = {Fast NJ-like algorithms to deal with incomplete distance matrices},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-166},
doi = {10.1186/1471-2105-9-166},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CriscuoloG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DaiTGZHYVBP08,
author = {Wei Dai and
Jens M. Teodoridis and
Janet Graham and
Constanze Zeller and
Tim Hui{-}Ming Huang and
Pearlly Yan and
J. Keith Vass and
Robert Brown and
Jim Paul},
title = {Methylation Linear Discriminant Analysis {(MLDA)} for identifying
differentially methylated CpG islands},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-337},
doi = {10.1186/1471-2105-9-337},
timestamp = {Tue, 30 Mar 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/DaiTGZHYVBP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DaiW08,
author = {Qi Dai and
Tian{-}Ming Wang},
title = {Comparison study on k-word statistical measures for protein: From
sequence to 'sequence space'},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-394},
doi = {10.1186/1471-2105-9-394},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DaiW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DaigleA08,
author = {Bernie J. Daigle Jr. and
Russ B. Altman},
title = {{M-BISON:} Microarray-based integration of data sources using networks},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-214},
doi = {10.1186/1471-2105-9-214},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DaigleA08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DandassBLB08,
author = {Yoginder S. Dandass and
Shane C. Burgess and
Mark L. Lawrence and
Susan M. Bridges},
title = {Accelerating String Set Matching in {FPGA} Hardware for Bioinformatics
Research},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-197},
doi = {10.1186/1471-2105-9-197},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DandassBLB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DavidLD08,
author = {Maria Pamela C. David and
Carlo M. Lapid and
Vincent Ricardo M. Daria},
title = {An efficient visualization tool for the analysis of protein mutation
matrices},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-218},
doi = {10.1186/1471-2105-9-218},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DavidLD08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DavidY08,
author = {Fabrice P. A. David and
Yum Lina Yip},
title = {SSMap: {A} new UniProt-PDB mapping resource for the curation of structural-related
information in the UniProt/Swiss-Prot Knowledgebase},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-391},
doi = {10.1186/1471-2105-9-391},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DavidY08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DeBarryLB08,
author = {Jeremy D. DeBarry and
Renyi Liu and
Jeffrey Bennetzen},
title = {Discovery and assembly of repeat family pseudomolecules from sparse
genomic sequence data using the Assisted Automated Assembler of Repeat
Families {(AAARF)} algorithm},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-235},
doi = {10.1186/1471-2105-9-235},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DeBarryLB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DekhtyarMS08,
author = {Michael I. Dekhtyar and
Amelie Morin and
Vehary Sakanyan},
title = {Triad pattern algorithm for predicting strong promoter candidates
in bacterial genomes},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-233},
doi = {10.1186/1471-2105-9-233},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/DekhtyarMS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DelaneauCZ08,
author = {Olivier Delaneau and
C{\'{e}}dric Coulonges and
Jean{-}Fran{\c{c}}ois Zagury},
title = {Shape-IT: new rapid and accurate algorithm for haplotype inference},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-540},
doi = {10.1186/1471-2105-9-540},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DelaneauCZ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DentonWTSP08,
author = {Anne M. Denton and
Jianfei Wu and
Megan K. Townsend and
Preeti Sule and
Birgit M. Pr{\"{u}}{\ss}},
title = {Relating gene expression data on two-component systems to functional
annotations in \emph{Escherichia coli}},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-294},
doi = {10.1186/1471-2105-9-294},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DentonWTSP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DiMaggioMFFRR08,
author = {Peter A. DiMaggio Jr. and
Scott R. McAllister and
Christodoulos A. Floudas and
Xiao{-}Jiang Feng and
Joshua D. Rabinowitz and
Herschel Rabitz},
title = {Biclustering via optimal re-ordering of data matrices in systems biology:
rigorous methods and comparative studies},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-458},
doi = {10.1186/1471-2105-9-458},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/DiMaggioMFFRR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Diaz-Uriarte08,
author = {Ram{\'{o}}n D{\'{\i}}az{-}Uriarte},
title = {SignS: a parallelized, open-source, freely available, web-based tool
for gene selection and molecular signatures for survival and censored
data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-30},
doi = {10.1186/1471-2105-9-30},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Diaz-Uriarte08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DingelHLHZM08,
author = {Janis Dingel and
Pavol Hanus and
Niccol{\`{o}} Leonardi and
Joachim Hagenauer and
J{\"{u}}rgen Zech and
Jakob C. Mueller},
title = {Local conservation scores without a priori assumptions on neutral
substitution rates},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-190},
doi = {10.1186/1471-2105-9-190},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DingelHLHZM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DogruelDH08,
author = {Mutlu Dogruel and
Thomas A. Down and
Tim J. P. Hubbard},
title = {NestedMICA as an ab initio protein motif discovery tool},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-19},
doi = {10.1186/1471-2105-9-19},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DogruelDH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DolanD08,
author = {Peter C. Dolan and
Dee R. Denver},
title = {TileQC: {A} system for tile-based quality control of Solexa data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-250},
doi = {10.1186/1471-2105-9-250},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DolanD08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DongYSKKMGLZ08,
author = {Wei Dong and
Litao Yang and
Kailin Shen and
Banghyun Kim and
Gijs A. Kleter and
Hans J. P. Marvin and
Rong Guo and
Wanqi Liang and
Dabing Zhang},
title = {{GMDD:} a database of {GMO} detection methods},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-260},
doi = {10.1186/1471-2105-9-260},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/DongYSKKMGLZ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DoringWRR08,
author = {Andreas D{\"{o}}ring and
David Weese and
Tobias Rausch and
Knut Reinert},
title = {SeqAn An efficient, generic {C++} library for sequence analysis},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-11},
doi = {10.1186/1471-2105-9-11},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DoringWRR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DrakosKZLNS08,
author = {John Drakos and
Marina Karakantza and
Nicholas C. Zoumbos and
John Lakoumentas and
George Nikiforidis and
George Sakellaropoulos},
title = {A perspective for biomedical data integration: Design of databases
for flow cytometry},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-99},
doi = {10.1186/1471-2105-9-99},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/DrakosKZLNS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DresenBHNJ08,
author = {Irina Gana Dresen and
Tanja Boes and
Johannes H{\"{u}}sing and
Markus Neuh{\"{a}}user and
Karl{-}Heinz J{\"{o}}ckel},
title = {New resampling method for evaluating stability of clusters},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-42},
doi = {10.1186/1471-2105-9-42},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DresenBHNJ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DunningBLTR08,
author = {Mark J. Dunning and
Nuno L. Barbosa{-}Morais and
Andy G. Lynch and
Simon Tavar{\'{e}} and
Matthew E. Ritchie},
title = {Statistical issues in the analysis of Illumina data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-85},
doi = {10.1186/1471-2105-9-85},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DunningBLTR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/EalesPSR08,
author = {James M. Eales and
John W. Pinney and
Robert D. Stevens and
David L. Robertson},
title = {Methodology capture: discriminating between the "best" and the rest
of community practice},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-359},
doi = {10.1186/1471-2105-9-359},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/EalesPSR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/EdlundLLBC08,
author = {Christopher K. Edlund and
Won H. Lee and
Dalin Li and
David J. Van Den Berg and
David V. Conti},
title = {Snagger: {A} user-friendly program for incorporating additional information
for tagSNP selection},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-174},
doi = {10.1186/1471-2105-9-174},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/EdlundLLBC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/EganMCBCS08,
author = {Amy Egan and
Anup Mahurkar and
Jonathan Crabtree and
Jonathan H. Badger and
Jane M. Carlton and
Joana C. Silva},
title = {{IDEA:} Interactive Display for Evolutionary Analyses},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-524},
doi = {10.1186/1471-2105-9-524},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/EganMCBCS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/EklundSW08,
author = {Martin Eklund and
Ola Spjuth and
Jarl E. S. Wikberg},
title = {The \emph{C}\({}^{\mbox{1}}\)\emph{C}\({}^{\mbox{2}}\): {A} framework
for simultaneous model selection and assessment},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-360},
doi = {10.1186/1471-2105-9-360},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/EklundSW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ElkonVAUZWMOSBASS08,
author = {Ran Elkon and
Rita Vesterman and
Nira Amit and
Igor Ulitsky and
Idan Zohar and
Mali Weisz and
Gilad Mass and
Nir Orlev and
Giora Sternberg and
Ran Blekhman and
Jackie Assa and
Yosef Shiloh and
Ron Shamir},
title = {{SPIKE} - a database, visualization and analysis tool of cellular
signaling pathways},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-110},
doi = {10.1186/1471-2105-9-110},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ElkonVAUZWMOSBASS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/EllinghausKW08,
author = {David Ellinghaus and
Stefan Kurtz and
Ute Willhoeft},
title = {\emph{LTRharvest}, an efficient and flexible software for \emph{de
novo }detection of {LTR} retrotransposons},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-18},
doi = {10.1186/1471-2105-9-18},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/EllinghausKW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ErhardFZ08,
author = {Florian Erhard and
Caroline C. Friedel and
Ralf Zimmer},
title = {{FERN} - a Java framework for stochastic simulation and evaluation
of reaction networks},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-356},
doi = {10.1186/1471-2105-9-356},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ErhardFZ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/EspadalerEQASMO08,
author = {Jordi Espadaler and
Narayanan Eswar and
Enrique Querol and
Francesc X. Avil{\'{e}}s and
Andrej Sali and
Marc A. Mart{\'{\i}}{-}Renom and
Baldomero Oliva},
title = {Prediction of enzyme function by combining sequence similarity and
protein interactions},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-249},
doi = {10.1186/1471-2105-9-249},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/EspadalerEQASMO08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FangHJ08,
author = {Yu{-}Ching Fang and
Hsuan{-}Cheng Huang and
Hsueh{-}Fen Juan},
title = {MeInfoText: associated gene methylation and cancer information from
text mining},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-22},
doi = {10.1186/1471-2105-9-22},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FangHJ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Farkas08,
author = {Rich{\'{a}}rd Farkas},
title = {The strength of co-authorship in gene name disambiguation},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-69},
doi = {10.1186/1471-2105-9-69},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Farkas08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FierroTEBMP08,
author = {Ana Carolina Fierro and
Raphael Thuret and
Kristof Engelen and
Gilles Bernot and
Kathleen Marchal and
Nicolas Pollet},
title = {Evaluation of time profile reconstruction from complex two-color microarray
designs},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-1},
doi = {10.1186/1471-2105-9-1},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/FierroTEBMP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FiersBDGH08,
author = {Mark W. E. J. Fiers and
Ate van der Burgt and
Erwin Datema and
Joost C. W. de Groot and
Roeland C. H. J. van Ham},
title = {High-throughput bioinformatics with the Cyrille2 pipeline system},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-96},
doi = {10.1186/1471-2105-9-96},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FiersBDGH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FoleyK08,
author = {Joseph W. Foley and
Fumiaki Katagiri},
title = {Unsupervised reduction of random noise in complex data by a row-specific,
sorted principal component-guided method},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-508},
doi = {10.1186/1471-2105-9-508},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FoleyK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FongRRWB08,
author = {Christine Fong and
Laurence Rohmer and
Matthew Radey and
Michael Wasnick and
Mitchell J. Brittnacher},
title = {{PSAT:} {A} web tool to compare genomic neighborhoods of multiple
prokaryotic genomes},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-170},
doi = {10.1186/1471-2105-9-170},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FongRRWB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FormentGRCNB08,
author = {Javier Forment and
Francisco Gilabert Villam{\'{o}}n and
Antonio Robles and
Vicente Conejero and
Fernando Nuez and
Jose M. Blanca},
title = {EST2uni: an open, parallel tool for automated {EST} analysis and database
creation, with a data mining web interface and microarray expression
data integration},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-5},
doi = {10.1186/1471-2105-9-5},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FormentGRCNB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FourmentG08,
author = {Mathieu Fourment and
Michael R. Gillings},
title = {A comparison of common programming languages used in bioinformatics},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-82},
doi = {10.1186/1471-2105-9-82},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FourmentG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FourmentG08a,
author = {Mathieu Fourment and
Mark J. Gibbs},
title = {The VirusBanker database uses a Java program to allow flexible searching
through \emph{Bunyaviridae }sequences},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-83},
doi = {10.1186/1471-2105-9-83},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FourmentG08a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Frank08,
author = {Daniel N. Frank},
title = {XplorSeq: {A} software environment for integrated management and phylogenetic
analysis of metagenomic sequence data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-420},
doi = {10.1186/1471-2105-9-420},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Frank08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FromkeHK08,
author = {Cornelia Fr{\"{o}}mke and
Ludwig A. Hothorn and
Siegfried Kropf},
title = {Nonparametric relevance-shifted multiple testing procedures for the
analysis of high-dimensional multivariate data with small sample sizes},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-54},
doi = {10.1186/1471-2105-9-54},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FromkeHK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FrommoltT08,
author = {Peter Frommolt and
Roman K. Thomas},
title = {Standardized high-throughput evaluation of cell-based compound screens},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-475},
doi = {10.1186/1471-2105-9-475},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FrommoltT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FurlongDHS08,
author = {Laura In{\'{e}}s Furlong and
Holger Dach and
Martin Hofmann{-}Apitius and
Ferran Sanz},
title = {OSIRISv1.2: {A} named entity recognition system for sequence variants
of genes in biomedical literature},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-84},
doi = {10.1186/1471-2105-9-84},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FurlongDHS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GabowLBHG08,
author = {Aaron Gabow and
Sonia M. Leach and
William A. Baumgartner Jr. and
Lawrence Hunter and
Debra Goldberg},
title = {Improving protein function prediction methods with integrated literature
data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-198},
doi = {10.1186/1471-2105-9-198},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GabowLBHG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Gadgil08,
author = {Mugdha Gadgil},
title = {A Population Proportion approach for ranking differentially expressed
genes},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-380},
doi = {10.1186/1471-2105-9-380},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Gadgil08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GanLY08,
author = {Xiangchao Gan and
Alan Wee{-}Chung Liew and
Hong Yan},
title = {Discovering biclusters in gene expression data based on high-dimensional
linear geometries},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-209},
doi = {10.1186/1471-2105-9-209},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GanLY08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GanesanRDTR08,
author = {Hamilton Ganesan and
Anna S. Rakitianskaia and
Colin F. Davenport and
Burkhard T{\"{u}}mmler and
Oleg N. Reva},
title = {The SeqWord Genome Browser: an online tool for the identification
and visualization of atypical regions of bacterial genomes through
oligonucleotide usage},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-333},
doi = {10.1186/1471-2105-9-333},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GanesanRDTR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GaoLZLKLZCWJ08,
author = {Zhenting Gao and
Honglin Li and
Hailei Zhang and
Xiaofeng Liu and
Ling Kang and
Xiaomin Luo and
Weiliang Zhu and
Kaixian Chen and
Xicheng Wang and
Hualiang Jiang},
title = {{PDTD:} a web-accessible protein database for drug target identification},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-104},
doi = {10.1186/1471-2105-9-104},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GaoLZLKLZCWJ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GaoS08,
author = {Xiaoyi Gao and
Joshua D. Starmer},
title = {AWclust: point-and-click software for non-parametric population structure
analysis},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-77},
doi = {10.1186/1471-2105-9-77},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GaoS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GaoZ08,
author = {Feng Gao and
Chun{-}Ting Zhang},
title = {Ori-Finder: {A} web-based system for finding \emph{oriC}s in unannotated
bacterial genomes},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-79},
doi = {10.1186/1471-2105-9-79},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GaoZ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GargG08,
author = {Aarti Garg and
Dinesh Gupta},
title = {VirulentPred: a {SVM} based prediction method for virulent proteins
in bacterial pathogens},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-62},
doi = {10.1186/1471-2105-9-62},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GargG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GargR08,
author = {Aarti Garg and
Gajendra P. S. Raghava},
title = {ESLpred2: improved method for predicting subcellular localization
of eukaryotic proteins},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-503},
doi = {10.1186/1471-2105-9-503},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GargR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GeCL08,
author = {Huanying Ge and
Chao Cheng and
Lei M. Li},
title = {A probe-treatment-reference {(PTR)} model for the analysis of oligonucleotide
expression microarrays},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-194},
doi = {10.1186/1471-2105-9-194},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GeCL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GeW08,
author = {Guangtao Ge and
G. William Wong},
title = {Classification of premalignant pancreatic cancer mass-spectrometry
data using decision tree ensembles},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-275},
doi = {10.1186/1471-2105-9-275},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GeW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GehrkeSKARKC08,
author = {Allison Gehrke and
Shaojun Sun and
Lukasz A. Kurgan and
Natalie Ahn and
Katheryn Resing and
Karen Kafadar and
Krzysztof J. Cios},
title = {Improved machine learning method for analysis of gas phase chemistry
of peptides},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-515},
doi = {10.1186/1471-2105-9-515},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GehrkeSKARKC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GesellW08,
author = {Tanja Gesell and
Stefan Washietl},
title = {Dinucleotide controlled null models for comparative {RNA} gene prediction},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-248},
doi = {10.1186/1471-2105-9-248},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GesellW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GharaibehFG08,
author = {Raad Z. Gharaibeh and
Anthony Fodor and
Cynthia Gibas},
title = {Background correction using dinucleotide affinities improves the performance
of {GCRMA}},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-452},
doi = {10.1186/1471-2105-9-452},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GharaibehFG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GhoshGDH08,
author = {Samiran Ghosh and
David F. Grant and
Dipak K. Dey and
Dennis W. Hill},
title = {A semiparametric modeling framework for potential biomarker discovery
and the development of metabonomic profiles},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-38},
doi = {10.1186/1471-2105-9-38},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GhoshGDH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GiancarloSU08,
author = {Raffaele Giancarlo and
Davide Scaturro and
Filippo Utro},
title = {Computational cluster validation for microarray data analysis: experimental
assessment of Clest, Consensus Clustering, Figure of Merit, Gap Statistics
and Model Explorer},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-462},
doi = {10.1186/1471-2105-9-462},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GiancarloSU08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GianchandaniOBMP08,
author = {Erwin P. Gianchandani and
Matthew A. Oberhardt and
Anthony P. Burgard and
Costas D. Maranas and
Jason A. Papin},
title = {Predicting biological system objectives de novo from internal state
measurements},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-43},
doi = {10.1186/1471-2105-9-43},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GianchandaniOBMP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GilchristCHPSUP08,
author = {Michael J. Gilchrist and
Mikkel B. Christensen and
Richard Harland and
Nicolas Pollet and
James C. Smith and
Naoto Ueno and
Nancy Papalopulu},
title = {Evading the annotation bottleneck: using sequence similarity to search
non-sequence gene data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-442},
doi = {10.1186/1471-2105-9-442},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GilchristCHPSUP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GolovinH08,
author = {Adel Golovin and
Kim Henrick},
title = {MSDmotif: exploring protein sites and motifs},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-312},
doi = {10.1186/1471-2105-9-312},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GolovinH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GonzalezCAVJYE08,
author = {Juan R. Gonz{\'{a}}lez and
Josep L. Carrasco and
Llu{\'{\i}}s Armengol and
Sergi Villatoro and
Llu{\'{\i}}s Jover and
Yutaka Yasui and
Xavier Estivill},
title = {Probe-specific mixed-model approach to detect copy number differences
using multiplex ligation-dependent probe amplification {(MLPA)}},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-261},
doi = {10.1186/1471-2105-9-261},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GonzalezCAVJYE08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GonzalezL08,
author = {Alvaro J. Gonz{\'{a}}lez and
Li Liao},
title = {Clustering exact matches of pairwise sequence alignments by weighted
linear regression},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-102},
doi = {10.1186/1471-2105-9-102},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GonzalezL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GormleyT08,
author = {Michael Gormley and
Aydin T{\"{o}}zeren},
title = {Expression profiles of switch-like genes accurately classify tissue
and infectious disease phenotypes in model-based classification},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-486},
doi = {10.1186/1471-2105-9-486},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GormleyT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Grafahrend-BelauSHSJGSWK08,
author = {Eva Grafahrend{-}Belau and
Falk Schreiber and
Monika Heiner and
Andrea Sackmann and
Bj{\"{o}}rn H. Junker and
Stefanie Grunwald and
Astrid Speer and
Katja Winder and
Ina Koch},
title = {Modularization of biochemical networks based on classification of
Petri net t-invariants},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-90},
doi = {10.1186/1471-2105-9-90},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Grafahrend-BelauSHSJGSWK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GromihaY08,
author = {M. Michael Gromiha and
Yukimitsu Yabuki},
title = {Functional discrimination of membrane proteins using machine learning
techniques},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-135},
doi = {10.1186/1471-2105-9-135},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GromihaY08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GronwaldHH08,
author = {Wolfram Gronwald and
Tim Hohm and
Daniel Hoffmann},
title = {Evolutionary Pareto-optimization of stably folding peptides},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-109},
doi = {10.1186/1471-2105-9-109},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GronwaldHH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GrootMLH08,
author = {Saskia de Groot and
Thomas Mailund and
Gerton Lunter and
Jotun Hein},
title = {Investigating selection on viruses: a statistical alignment approach},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-304},
doi = {10.1186/1471-2105-9-304},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GrootMLH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GrosdidierF08,
author = {Sol{\`{e}}ne Grosdidier and
Juan Fern{\'{a}}ndez{-}Recio},
title = {Identification of hot-spot residues in protein-protein interactions
by computational docking},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-447},
doi = {10.1186/1471-2105-9-447},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GrosdidierF08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GrothWPL08,
author = {Philip Groth and
Bertram Weiss and
Hans{-}Dieter Pohlenz and
Ulf Leser},
title = {Mining phenotypes for gene function prediction},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-136},
doi = {10.1186/1471-2105-9-136},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GrothWPL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GruberBHW08,
author = {Andreas R. Gruber and
Stephan H. Bernhart and
Ivo L. Hofacker and
Stefan Washietl},
title = {Strategies for measuring evolutionary conservation of {RNA} secondary
structures},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-122},
doi = {10.1186/1471-2105-9-122},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GruberBHW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GruntmanQSRMS08,
author = {Eyal Gruntman and
Yijun Qi and
R. Keith Slotkin and
Ted Roeder and
Robert A. Martienssen and
Ravi Sachidanandam},
title = {Kismeth: Analyzer of plant methylation states through bisulfite sequencing},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-371},
doi = {10.1186/1471-2105-9-371},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GruntmanQSRMS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GschloesslGC08,
author = {Bernhard Gschloessl and
Yann Guermeur and
J. Mark Cock},
title = {{HECTAR:} {A} method to predict subcellular targeting in heterokonts},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-393},
doi = {10.1186/1471-2105-9-393},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GschloesslGC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GuesciniSRSS08,
author = {Michele Guescini and
Davide Sisti and
Marco B. L. Rocchi and
Laura Stocchi and
Vilberto Stocchi},
title = {A new real-time {PCR} method to overcome significant quantitative
inaccuracy due to slight amplification inhibition},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-326},
doi = {10.1186/1471-2105-9-326},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GuesciniSRSS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GuimaraesP08,
author = {Katia S. Guimar{\~{a}}es and
Teresa M. Przytycka},
title = {Interrogating domain-domain interactions with parsimony based approaches},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-171},
doi = {10.1186/1471-2105-9-171},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GuimaraesP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HahneMAPWB08,
author = {Florian Hahne and
Alexander Mehrle and
Dorit Arlt and
Annemarie Poustka and
Stefan Wiemann and
Tim Bei{\ss}barth},
title = {Extending pathways based on gene lists using InterPro domain signatures},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-3},
doi = {10.1186/1471-2105-9-3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HahneMAPWB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HaiminenMT08,
author = {Niina Haiminen and
Heikki Mannila and
Evimaria Terzi},
title = {Determining significance of pairwise co-occurrences of events in bursty
sequences},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-336},
doi = {10.1186/1471-2105-9-336},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HaiminenMT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Halling-BrownMS08,
author = {Mark D. Halling{-}Brown and
David S. Moss and
Adrian J. Shepherd},
title = {Towards a lightweight generic computational grid framework for biological
research},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-407},
doi = {10.1186/1471-2105-9-407},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Halling-BrownMS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HambyH08,
author = {Stephen E. Hamby and
Jonathan D. Hirst},
title = {Prediction of glycosylation sites using random forests},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-500},
doi = {10.1186/1471-2105-9-500},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HambyH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HamiltonT08,
author = {Nicholas A. Hamilton and
Rohan D. Teasdale},
title = {Visualizing and clustering high throughput sub-cellular localization
imaging},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-81},
doi = {10.1186/1471-2105-9-81},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HamiltonT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HammamiZNHF08,
author = {Riadh Hammami and
Abdelmajid Zouhir and
Karim Naghmouchi and
Jeannette Ben Hamida and
Ismail Fliss},
title = {SciDBMaker: new software for computer-aided design of specialized
biological databases},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-121},
doi = {10.1186/1471-2105-9-121},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HammamiZNHF08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HanWB08,
author = {Lianyi Han and
Yanli Wang and
Stephen H. Bryant},
title = {Developing and validating predictive decision tree models from mining
chemical structural fingerprints and high-throughput screening data
in PubChem},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-401},
doi = {10.1186/1471-2105-9-401},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HanWB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HaneO08,
author = {James K. Hane and
Richard P. Oliver},
title = {{RIPCAL:} a tool for alignment-based analysis of repeat-induced point
mutations in fungal genomic sequences},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-478},
doi = {10.1186/1471-2105-9-478},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HaneO08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HeroldKG08,
author = {Julia Herold and
Stefan Kurtz and
Robert Giegerich},
title = {Efficient computation of absent words in genomic sequences},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-167},
doi = {10.1186/1471-2105-9-167},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HeroldKG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HestandGVODH08,
author = {Matthew S. Hestand and
Michiel van Galen and
Michel P. Villerius and
Gert{-}Jan B. van Ommen and
Johan T. den Dunnen and
Peter A. C. 't Hoen},
title = {CORE{\_}TF: a user-friendly interface to identify evolutionary conserved
transcription factor binding sites in sets of co-regulated genes},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-495},
doi = {10.1186/1471-2105-9-495},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HestandGVODH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HijumBZKMTKK08,
author = {Sacha A. F. T. van Hijum and
Richard J. S. Baerends and
Aldert L. Zomer and
Harma A. Karsens and
Victoria Martin{-}Requena and
Oswaldo Trelles and
Jan Kok and
Oscar P. Kuipers},
title = {Supervised Lowess normalization of comparative genome hybridization
data - application to lactococcal strain comparisons},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-93},
doi = {10.1186/1471-2105-9-93},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HijumBZKMTKK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HillHFMSSTG08,
author = {Jon Hill and
Matthew Hambley and
Thorsten Forster and
Muriel Mewissen and
Terence M. Sloan and
Florian Scharinger and
Arthur S. Trew and
Peter Ghazal},
title = {{SPRINT:} {A} new parallel framework for {R}},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-558},
doi = {10.1186/1471-2105-9-558},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HillHFMSSTG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HoffTLDMM08,
author = {Katharina Jasmin Hoff and
Maike Tech and
Thomas Lingner and
Rolf Daniel and
Burkhard Morgenstern and
Peter Meinicke},
title = {Gene prediction in metagenomic fragments: {A} large scale machine
learning approach},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-217},
doi = {10.1186/1471-2105-9-217},
timestamp = {Tue, 24 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HoffTLDMM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HousemanCYMKWNWZWK08,
author = {Eugene Andres Houseman and
Brock C. Christensen and
Ru{-}Fang Yeh and
Carmen J. Marsit and
Margaret R. Karagas and
Margaret R. Wrensch and
Heather H. Nelson and
Joseph Wiemels and
Shichun Zheng and
John K. Wiencke and
Karl T. Kelsey},
title = {Model-based clustering of {DNA} methylation array data: a recursive-partitioning
algorithm for high-dimensional data arising as a mixture of beta distributions},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-365},
doi = {10.1186/1471-2105-9-365},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HousemanCYMKWNWZWK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HsingC08,
author = {Michael Hsing and
Artem Cherkasov},
title = {Indel {PDB:} {A} database of structural insertions and deletions derived
from sequence alignments of closely related proteins},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-293},
doi = {10.1186/1471-2105-9-293},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HsingC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuCSKY08,
author = {Meng Hu and
Kwangmin Choi and
Wei Su and
Sun Kim and
Jiong Yang},
title = {A gene pattern mining algorithm using interchangeable gene sets for
prokaryotes},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-124},
doi = {10.1186/1471-2105-9-124},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HuCSKY08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuY08,
author = {Jing Hu and
Changhui Yan},
title = {Identification of deleterious non-synonymous single nucleotide polymorphisms
using sequence-derived information},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-297},
doi = {10.1186/1471-2105-9-297},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HuY08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuZJZS08,
author = {Gang{-}Qing Hu and
Xiaobin Zheng and
Lining Ju and
Huaiqiu Zhu and
Zhen{-}Su She},
title = {Computational evaluation of {TIS} annotation for prokaryotic genomes},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-160},
doi = {10.1186/1471-2105-9-160},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HuZJZS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuangBGWZL08,
author = {Yanxin Huang and
Yongli Bao and
Shu Yan Guo and
Yan Wang and
Chunguang Zhou and
Yuxin Li},
title = {Pep-3D-Search: a method for B-cell epitope prediction based on mimotope
analysis},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-538},
doi = {10.1186/1471-2105-9-538},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HuangBGWZL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuangTHHH08,
author = {Wen{-}Lin Huang and
Chun{-}Wei Tung and
Shih{-}Wen Ho and
Shiow{-}Fen Hwang and
Shinn{-}Ying Ho},
title = {ProLoc-GO: Utilizing informative Gene Ontology terms for sequence-based
prediction of protein subcellular localization},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-80},
doi = {10.1186/1471-2105-9-80},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HuangTHHH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuangTHZZY08,
author = {Zhong{-}Xi Huang and
Hui{-}Yong Tian and
Zhen{-}Fu Hu and
Yi{-}Bo Zhou and
Jin Zhao and
Kai{-}Tai Yao},
title = {GenCLiP: a software program for clustering gene lists by literature
profiling and constructing gene co-occurrence networks related to
custom keywords},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-308},
doi = {10.1186/1471-2105-9-308},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HuangTHZZY08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuangZSMZSB08,
author = {Liping Huang and
Wenying Zhu and
Christopher P. Saunders and
James N. MacLeod and
Mai Zhou and
Arnold J. Stromberg and
Arne C. Bathke},
title = {A novel application of quantile regression for identification of biomarkers
exemplified by equine cartilage microarray data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-300},
doi = {10.1186/1471-2105-9-300},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HuangZSMZSB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HumburgBS08,
author = {Peter Humburg and
David W. Bulger and
Glenn Stone},
title = {Parameter estimation for robust {HMM} analysis of ChIP-chip data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-343},
doi = {10.1186/1471-2105-9-343},
timestamp = {Tue, 05 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HumburgBS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HunterLFBJOC08,
author = {Lawrence Hunter and
Zhiyong Lu and
James Firby and
William A. Baumgartner Jr. and
Helen L. Johnson and
Philip V. Ogren and
K. Bretonnel Cohen},
title = {OpenDMAP: An open source, ontology-driven concept analysis engine,
with applications to capturing knowledge regarding protein transport,
protein interactions and cell-type-specific gene expression},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-78},
doi = {10.1186/1471-2105-9-78},
timestamp = {Tue, 26 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HunterLFBJOC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuntleyTNBB08,
author = {Derek Huntley and
Y. Amy Tang and
Tatyana B. Nesterova and
Sarah A. Butcher and
Neil Brockdorff},
title = {Genome Environment Browser {(GEB):} a dynamic browser for visualising
high-throughput experimental data in the context of genome features},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-501},
doi = {10.1186/1471-2105-9-501},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HuntleyTNBB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HwangCZR08,
author = {Woochang Hwang and
Young{-}Rae Cho and
Aidong Zhang and
Murali Ramanathan},
title = {{CASCADE:} a novel quasi all paths-based network analysis algorithm
for clustering biological interactions},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-64},
doi = {10.1186/1471-2105-9-64},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HwangCZR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/IafollaDM08,
author = {Marco A. J. Iafolla and
Guang Qiang Dong and
David R. McMillen},
title = {Increasing the efficiency of bacterial transcription simulations:
When to exclude the genome without loss of accuracy},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-373},
doi = {10.1186/1471-2105-9-373},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/IafollaDM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/IerselKPHCCE08,
author = {Martijn P. van Iersel and
Thomas Kelder and
Alexander R. Pico and
Kristina Hanspers and
Susan L. Coort and
Bruce R. Conklin and
Chris T. A. Evelo},
title = {Presenting and exploring biological pathways with PathVisio},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-399},
doi = {10.1186/1471-2105-9-399},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/IerselKPHCCE08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/IspolatovM08,
author = {Iaroslav Ispolatov and
Sergei Maslov},
title = {Detection of the dominant direction of information flow and feedback
links in densely interconnected regulatory networks},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-424},
doi = {10.1186/1471-2105-9-424},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/IspolatovM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/IwamaHMMI08,
author = {Hisakazu Iwama and
Yukio Hori and
Kensuke Matsumoto and
Koji Murao and
Toshihiko Ishida},
title = {ReAlignerV: Web-based genomic alignment tool with high specificity
and robustness estimated by species-specific insertion sequences},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-112},
doi = {10.1186/1471-2105-9-112},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/IwamaHMMI08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/IzarzugazaJPPV08,
author = {Jos{\'{e}} M. G. Izarzugaza and
David de Juan and
Carles Pons and
Florencio Pazos and
Alfonso Valencia},
title = {Enhancing the prediction of protein pairings between interacting families
using orthology information},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-35},
doi = {10.1186/1471-2105-9-35},
timestamp = {Sat, 19 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/IzarzugazaJPPV08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JacobHSV08,
author = {Laurent Jacob and
Brice Hoffmann and
V{\'{e}}ronique Stoven and
Jean{-}Philippe Vert},
title = {Virtual screening of GPCRs: An \emph{in silico} chemogenomics approach},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-363},
doi = {10.1186/1471-2105-9-363},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JacobHSV08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JamesonGGBAOP08,
author = {Daniel Jameson and
Kevin L. Garwood and
Christopher Garwood and
Tim Booth and
Pinar Alper and
Stephen G. Oliver and
Norman W. Paton},
title = {Data capture in bioinformatics: requirements and experiences with
Pedro},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-183},
doi = {10.1186/1471-2105-9-183},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JamesonGGBAOP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JankyH08,
author = {Rekin's Janky and
Jacques van Helden},
title = {Evaluation of phylogenetic footprint discovery for predicting bacterial
cis-regulatory elements and revealing their evolution},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-37},
doi = {10.1186/1471-2105-9-37},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/JankyH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JanssenRG08,
author = {Stefan Janssen and
Jens Reeder and
Robert Giegerich},
title = {Shape based indexing for faster search of {RNA} family databases},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-131},
doi = {10.1186/1471-2105-9-131},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JanssenRG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JelierHSDOKM08,
author = {Rob Jelier and
Peter A. C. 't Hoen and
Ellen Sterrenburg and
Johan T. den Dunnen and
Gert{-}Jan B. van Ommen and
Jan A. Kors and
Barend Mons},
title = {Literature-aided meta-analysis of microarray data: a compendium study
on muscle development and disease},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-291},
doi = {10.1186/1471-2105-9-291},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/JelierHSDOKM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JenYTSLHW08,
author = {Chih{-}Hung Jen and
Tsun{-}Po Yang and
Chien{-}Yi Tung and
Shu{-}Han Su and
Chi{-}Hung Lin and
Ming{-}Ta Hsu and
Hsei{-}Wei Wang},
title = {Signature Evaluation Tool {(SET):} a Java-based tool to evaluate and
visualize the sample discrimination abilities of gene expression signatures},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-58},
doi = {10.1186/1471-2105-9-58},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JenYTSLHW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JiangAGM08,
author = {Minghui Jiang and
James Anderson and
Joel Gillespie and
Martin Mayne},
title = {uShuffle: {A} useful tool for shuffling biological sequences while
preserving the k-let counts},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-192},
doi = {10.1186/1471-2105-9-192},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JiangAGM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JiangLHPJDWKL08,
author = {Ning Jiang and
Lindsey J. Leach and
Xiaohua Hu and
Elena Potokina and
Tianye Jia and
Arnis Druka and
Robbie Waugh and
Michael J. Kearsey and
Zewei Luo},
title = {Methods for evaluating gene expression from Affymetrix microarray
datasets},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-284},
doi = {10.1186/1471-2105-9-284},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/JiangLHPJDWKL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JiangNSKK08,
author = {Xiaoyu Jiang and
Naoki Nariai and
Martin Steffen and
Simon Kasif and
Eric D. Kolaczyk},
title = {Integration of relational and hierarchical network information for
protein function prediction},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-350},
doi = {10.1186/1471-2105-9-350},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JiangNSKK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JinMZL08,
author = {Bo Jin and
Brian Muller and
Chengxiang Zhai and
Xinghua Lu},
title = {Multi-label literature classification based on the Gene Ontology graph},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-525},
doi = {10.1186/1471-2105-9-525},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JinMZL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JonesKWLPSGC08,
author = {Thouis R. Jones and
In Han Kang and
Douglas B. Wheeler and
Robert A. Lindquist and
Adam Papallo and
David M. Sabatini and
Polina Golland and
Anne E. Carpenter},
title = {CellProfiler Analyst: data exploration and analysis software for complex
image-based screens},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-482},
doi = {10.1186/1471-2105-9-482},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/JonesKWLPSGC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JonnalagaddaS08,
author = {Sudhakar Jonnalagadda and
Rajagopalan Srinivasan},
title = {Principal components analysis based methodology to identify differentially
expressed genes in time-course microarray data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-267},
doi = {10.1186/1471-2105-9-267},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JonnalagaddaS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JorgMW08,
author = {Thomas J{\"{o}}rg and
Olivier C. Martin and
Andreas Wagner},
title = {Neutral network sizes of biological {RNA} molecules can be computed
and are not atypically small},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-464},
doi = {10.1186/1471-2105-9-464},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JorgMW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JorstadMB08,
author = {Tommy S. J{\o}rstad and
Herman Midelfart and
Atle M. Bones},
title = {A mixture model approach to sample size estimation in two-sample comparative
microarray experiments},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-117},
doi = {10.1186/1471-2105-9-117},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JorstadMB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JudsonESLS08,
author = {Richard S. Judson and
Fathi Elloumi and
R. Woodrow Setzer and
Zhen Li and
Imran Shah},
title = {A comparison of machine learning algorithms for chemical toxicity
classification using a simulated multi-scale data model},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-241},
doi = {10.1186/1471-2105-9-241},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JudsonESLS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JungLLK08,
author = {Inkyung Jung and
Jaehyung Lee and
Soo{-}Young Lee and
Dongsup Kim},
title = {Application of nonnegative matrix factorization to improve profile-profile
alignment features for fold recognition and remote homolog detection},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-298},
doi = {10.1186/1471-2105-9-298},
timestamp = {Fri, 17 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/JungLLK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KainkaryamW08,
author = {Raghunandan M. Kainkaryam and
Peter J. Woolf},
title = {poolHiTS: {A} Shifted Transversal Design based pooling strategy for
high-throughput drug screening},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-256},
doi = {10.1186/1471-2105-9-256},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KainkaryamW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KaramanisSLMVGDB08,
author = {Nikiforos Karamanis and
Ruth L. Seal and
Ian Lewin and
Peter McQuilton and
Andreas Vlachos and
Caroline Gasperin and
Rachel A. Drysdale and
Ted Briscoe},
title = {Natural Language Processing in aid of FlyBase curators},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-193},
doi = {10.1186/1471-2105-9-193},
timestamp = {Tue, 03 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KaramanisSLMVGDB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Karimpour-FardLGH08,
author = {Anis Karimpour{-}Fard and
Sonia M. Leach and
Ryan T. Gill and
Lawrence Hunter},
title = {Predicting protein linkages in bacteria: Which method is best depends
on task},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-397},
doi = {10.1186/1471-2105-9-397},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Karimpour-FardLGH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KatohT08,
author = {Kazutaka Katoh and
Hiroyuki Toh},
title = {Improved accuracy of multiple ncRNA alignment by incorporating structural
information into a MAFFT-based framework},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-212},
doi = {10.1186/1471-2105-9-212},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KatohT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KechrisL08,
author = {Katerina J. Kechris and
Hao Li},
title = {c-REDUCE: Incorporating sequence conservation to detect motifs that
correlate with expression},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-506},
doi = {10.1186/1471-2105-9-506},
timestamp = {Sun, 18 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KechrisL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KeichGGBLDT08,
author = {Uri Keich and
Hong Gao and
Jeffrey S. Garretson and
Anand Bhaskar and
Ivan Liachko and
Justin Donato and
Bik K. Tye},
title = {Computational detection of significant variation in binding affinity
across two sets of sequences with application to the analysis of replication
origins in yeast},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-372},
doi = {10.1186/1471-2105-9-372},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KeichGGBLDT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KellerBAGKKKL08,
author = {Andreas Keller and
Christina Backes and
Maher Al{-}Awadhi and
Andreas Gerasch and
Jan K{\"{u}}ntzer and
Oliver Kohlbacher and
Michael Kaufmann and
Hans{-}Peter Lenhof},
title = {GeneTrailExpress: a web-based pipeline for the statistical evaluation
of microarray experiments},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-552},
doi = {10.1186/1471-2105-9-552},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KellerBAGKKKL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KellerOSKW08,
author = {Oliver Keller and
Florian Odronitz and
Mario Stanke and
Martin Kollmar and
Stephan Waack},
title = {Scipio: Using protein sequences to determine the precise exon/intron
structures of genes and their orthologs in closely related species},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-278},
doi = {10.1186/1471-2105-9-278},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KellerOSKW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KestlerMKBGLKZW08,
author = {Hans A. Kestler and
Andr{\'{e}} M{\"{u}}ller and
Johann M. Kraus and
Malte Buchholz and
Thomas M. Gress and
Hongfang Liu and
David W. Kane and
Barry Zeeberg and
John N. Weinstein},
title = {VennMaster: Area-proportional Euler diagrams for functional {GO} analysis
of microarrays},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-67},
doi = {10.1186/1471-2105-9-67},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KestlerMKBGLKZW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Kiiveri08,
author = {Harri T. Kiiveri},
title = {A general approach to simultaneous model fitting and variable elimination
in response models for biological data with many more variables than
observations},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-195},
doi = {10.1186/1471-2105-9-195},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Kiiveri08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimBT08,
author = {Chang Sik Kim and
Cheol Soo Bae and
Hong Joon Tcha},
title = {A phase synchronization clustering algorithm for identifying interesting
groups of genes from cell cycle expression data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-56},
doi = {10.1186/1471-2105-9-56},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KimBT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimJSHPS08,
author = {Jong{-}Min Kim and
Yoon{-}Sung Jung and
Engin A. Sungur and
Kap{-}Hoon Han and
Changyi Park and
Insuk Sohn},
title = {A copula method for modeling directional dependence of genes},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-225},
doi = {10.1186/1471-2105-9-225},
timestamp = {Fri, 11 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KimJSHPS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimKJCR08,
author = {Ki{-}Yeol Kim and
Dong Hyuk Ki and
Hei{-}Cheul Jeung and
Hyun Cheol Chung and
Sun Young Rha},
title = {Improving the prediction accuracy in classification using the combined
data sets by ranks of gene expressions},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-283},
doi = {10.1186/1471-2105-9-283},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KimKJCR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimOT08,
author = {Jin{-}Dong Kim and
Tomoko Ohta and
Jun'ichi Tsujii},
title = {Corpus annotation for mining biomedical events from literature},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-10},
doi = {10.1186/1471-2105-9-10},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KimOT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimPD08,
author = {Hyunsoo Kim and
Haesun Park and
Barry L. Drake},
title = {Extracting unrecognized gene relationships from the biomedical literature
via matrix factorizations},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-211},
doi = {10.1186/1471-2105-9-211},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KimPD08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimPKCKPCPKYPLB08,
author = {Jeong{-}Gu Kim and
Daeui Park and
Byoung{-}Chul Kim and
Seong{-}Woong Cho and
Yeong Tae Kim and
Young{-}Jin Park and
Hee Jung Cho and
Hyunseok Park and
Ki{-}Bong Kim and
Kyong{-}Oh Yoon and
Soo{-}Jun Park and
Byoung{-}Moo Lee and
Jong Bhak},
title = {Predicting the Interactome of \emph{Xanthomonas oryzae }pathovar oryzae
for target selection and {DB} service},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-41},
doi = {10.1186/1471-2105-9-41},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KimPKCKPCPKYPLB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimTMS08,
author = {Nak{-}Kyeong Kim and
Kannan Tharakaraman and
Leonardo Mari{\~{n}}o{-}Ram{\'{\i}}rez and
John L. Spouge},
title = {Finding sequence motifs with Bayesian models incorporating positional
information: an application to transcription factor binding sites},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-262},
doi = {10.1186/1471-2105-9-262},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KimTMS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimW08,
author = {Kyung In Kim and
Mark A. van de Wiel},
title = {Effects of dependence in high-dimensional multiple testing problems},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-114},
doi = {10.1186/1471-2105-9-114},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KimW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimuraSYMMH08,
author = {Shuhei Kimura and
Katsuki Sonoda and
Soichiro Yamane and
Hideki Maeda and
Koki Matsumura and
Mariko Hatakeyama},
title = {Function approximation approach to the inference of reduced NGnet
models of genetic networks},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-23},
doi = {10.1186/1471-2105-9-23},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KimuraSYMMH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KlepperSAJD08,
author = {Kjetil Klepper and
Geir Kjetil Sandve and
Osman Abul and
Jostein Johansen and
Finn Drabl{\o}s},
title = {Assessment of composite motif discovery methods},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-123},
doi = {10.1186/1471-2105-9-123},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KlepperSAJD08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KnowltonLRBEE08,
author = {Michelle N. Knowlton and
Tongbin Li and
Yongliang Ren and
Brent R. Bill and
Lynda B. M. Ellis and
Stephen C. Ekker},
title = {A PATO-compliant zebrafish screening database {(MODB):} management
of morpholino knockdown screen information},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-7},
doi = {10.1186/1471-2105-9-7},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KnowltonLRBEE08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KostkaUCF08,
author = {Martin Kostka and
Magdalena Uzlikova and
Ivan Cepicka and
Jaroslav Flegr},
title = {SlowFaster, a user-friendly program for slow-fast analysis and its
application on phylogeny of \emph{Blastocystis}},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-341},
doi = {10.1186/1471-2105-9-341},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KostkaUCF08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KouskoumvekakiYJOP08,
author = {Irene Kouskoumvekaki and
Zhiyong Yang and
Svava {\'{O}}sk J{\'{o}}nsd{\'{o}}ttir and
Lisbeth Olsson and
Gianni Panagiotou},
title = {Identification of biomarkers for genotyping \emph{Aspergilli }using
non-linear methods for clustering and classification},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-59},
doi = {10.1186/1471-2105-9-59},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KouskoumvekakiYJOP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KrajSGPM08,
author = {Piotr Kraj and
Ashok Sharma and
Nikhil Garge and
Robert H. Podolsky and
Richard A. McIndoe},
title = {ParaKMeans: Implementation of a parallelized K-means algorithm suitable
for general laboratory use},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-200},
doi = {10.1186/1471-2105-9-200},
timestamp = {Tue, 16 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KrajSGPM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KratzTK08,
author = {Anton Kratz and
Masaru Tomita and
Arun Krishnan},
title = {GeNESiS: gene network evolution simulation software},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-541},
doi = {10.1186/1471-2105-9-541},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KratzTK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KrebsFT08,
author = {Arnaud Krebs and
Mattia Frontini and
L{\`{a}}szl{\`{o}} Tora},
title = {{GPAT:} Retrieval of genomic annotation from large genomic position
datasets},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-533},
doi = {10.1186/1471-2105-9-533},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KrebsFT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KristensenWLECFKKL08,
author = {David M. Kristensen and
R. Matthew Ward and
Andreas Martin Lisewski and
Serkan Erdin and
Brian Y. Chen and
Viacheslav Fofanov and
Marek Kimmel and
Lydia E. Kavraki and
Olivier Lichtarge},
title = {Prediction of enzyme function based on 3D templates of evolutionarily
important amino acids},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-17},
doi = {10.1186/1471-2105-9-17},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KristensenWLECFKKL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KuH08,
author = {Shih{-}Yen Ku and
Yuh{-}Jyh Hu},
title = {Protein structure search and local structure characterization},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-349},
doi = {10.1186/1471-2105-9-349},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KuH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KuhnENS08,
author = {Stefan Kuhn and
Bj{\"{o}}rn Egert and
Steffen Neumann and
Christoph Steinbeck},
title = {Building blocks for automated elucidation of metabolites: Machine
learning methods for {NMR} prediction},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-400},
doi = {10.1186/1471-2105-9-400},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KuhnENS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KuhnLD08,
author = {Alexandre Kuhn and
Ruth Luthi{-}Carter and
Mauro Delorenzi},
title = {Cross-species and cross-platform gene expression studies with the
Bioconductor-compliant {R} package 'annotationTools'},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-26},
doi = {10.1186/1471-2105-9-26},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KuhnLD08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KurganCC08,
author = {Lukasz A. Kurgan and
Krzysztof J. Cios and
Ke Chen},
title = {{SCPRED:} Accurate prediction of protein structural class for sequences
of twilight-zone similarity with predicting sequences},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-226},
doi = {10.1186/1471-2105-9-226},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KurganCC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KwasigrochWGR08,
author = {Jean Marc Kwasigroch and
Ren{\'{e}} Wintjens and
Dimitri Gilis and
Marianne Rooman},
title = {SODa: An Mn/Fe superoxide dismutase prediction and design server},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-257},
doi = {10.1186/1471-2105-9-257},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KwasigrochWGR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LagorceSGMV08,
author = {David Lagorce and
Olivier Sperandio and
Herv{\'{e}} Galons and
Maria A. Miteva and
Bruno O. Villoutreix},
title = {FAF-Drugs2: Free ADME/tox filtering tool to assist drug discovery
and chemical biology projects},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-396},
doi = {10.1186/1471-2105-9-396},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LagorceSGMV08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LangeTNG08,
author = {Eva Lange and
Ralf Tautenhahn and
Steffen Neumann and
Clemens Gr{\"{o}}pl},
title = {Critical assessment of alignment procedures for {LC-MS} proteomics
and metabolomics measurements},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-375},
doi = {10.1186/1471-2105-9-375},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LangeTNG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LangfelderH08,
author = {Peter Langfelder and
Steve Horvath},
title = {{WGCNA:} an {R} package for weighted correlation network analysis},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-559},
doi = {10.1186/1471-2105-9-559},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LangfelderH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LangilleHB08,
author = {Morgan G. I. Langille and
William W. L. Hsiao and
Fiona S. L. Brinkman},
title = {Evaluation of genomic island predictors using a comparative genomics
approach},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-329},
doi = {10.1186/1471-2105-9-329},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LangilleHB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LapinshESPW08,
author = {Maris Lapins and
Martin Eklund and
Ola Spjuth and
Peteris Prusis and
Jarl E. S. Wikberg},
title = {Proteochemometric modeling of {HIV} protease susceptibility},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-181},
doi = {10.1186/1471-2105-9-181},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LapinshESPW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LauNTPKJH08,
author = {Christopher Lau and
Lydia Ng and
Carol L. Thompson and
Sayan D. Pathak and
Leonard Kuan and
Allan Jones and
Michael Hawrylycz},
title = {Exploration and visualization of gene expression with neuroanatomy
in the adult mouse brain},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-153},
doi = {10.1186/1471-2105-9-153},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LauNTPKJH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LaunayS08,
author = {Guillaume Launay and
Thomas Simonson},
title = {Homology modelling of protein-protein complexes: a simple method and
its possibilities and limitations},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-427},
doi = {10.1186/1471-2105-9-427},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LaunayS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LeeKN08,
author = {Tae{-}Ho Lee and
Yeon{-}Ki Kim and
Baek Hie Nahm},
title = {GBParsy: {A} GenBank flatfile parser library with high speed},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-321},
doi = {10.1186/1471-2105-9-321},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LeeKN08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LeeMBV08,
author = {Ho{-}Joon Lee and
Thomas Manke and
Ricardo Bringas and
Martin Vingron},
title = {Prioritization of gene regulatory interactions from large-scale modules
in yeast},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-32},
doi = {10.1186/1471-2105-9-32},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LeeMBV08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LeeSHCYS08,
author = {Hwan Young Lee and
Injee Song and
Eunho Ha and
Sung{-}Bae Cho and
Woo Ick Yang and
Kyoung{-}Jin Shin},
title = {mtDNAmanager: a Web-based tool for the management and quality analysis
of mitochondrial {DNA} control-region sequences},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-483},
doi = {10.1186/1471-2105-9-483},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LeeSHCYS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LeeWK08,
author = {Sang Hong Lee and
Julius H. J. Van der Werf and
Brian P. Kinghorn},
title = {Using an evolutionary algorithm and parallel computing for haplotyping
in a general complex pedigree with multiple marker loci},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-189},
doi = {10.1186/1471-2105-9-189},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LeeWK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LeeWLMS08,
author = {Wah{-}Heng Lee and
Christopher W. Wong and
Wan Yee Leong and
Lance D. Miller and
Wing{-}Kin Sung},
title = {{LOMA:} {A} fast method to generate efficient tagged-random primers
despite amplification bias of random {PCR} on pathogens},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-368},
doi = {10.1186/1471-2105-9-368},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LeeWLMS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LeesJ08,
author = {Jonathan G. Lees and
Robert W. Janes},
title = {Combining sequence-based prediction methods and circular dichroism
and infrared spectroscopic data to improve protein secondary structure
determinations},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-24},
doi = {10.1186/1471-2105-9-24},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LeesJ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LehmannSP08,
author = {J{\"{o}}rg Lehmann and
Peter F. Stadler and
Sonja J. Prohaska},
title = {SynBlast: Assisting the analysis of conserved synteny information},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-351},
doi = {10.1186/1471-2105-9-351},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LehmannSP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LemaitreTGS08,
author = {Claire Lemaitre and
Eric Tannier and
Christian Gautier and
Marie{-}France Sagot},
title = {Precise detection of rearrangement breakpoints in mammalian chromosomes},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-286},
doi = {10.1186/1471-2105-9-286},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LemaitreTGS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LemoineLL08,
author = {Fr{\'{e}}d{\'{e}}ric Lemoine and
Bernard Labedan and
Olivier Lespinet},
title = {SynteBase/SynteView: a tool to visualize gene order conservation in
prokaryotic genomes},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-536},
doi = {10.1186/1471-2105-9-536},
timestamp = {Thu, 25 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LemoineLL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LeontovichTH08,
author = {Andrey M. Leontovich and
Konstantin Y. Tokmachev and
Hans C. van Houwelingen},
title = {The comparative analysis of statistics, based on the likelihood ratio
criterion, in the automated annotation problem},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-31},
doi = {10.1186/1471-2105-9-31},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LeontovichTH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LeyritzSBKRBBPG08,
author = {Johan Leyritz and
St{\'{e}}phane Schicklin and
Sylvain Blachon and
C{\'{e}}line Keime and
C{\'{e}}line Robardet and
Jean{-}Fran{\c{c}}ois Boulicaut and
J{\'{e}}r{\'{e}}my Besson and
Ruggero G. Pensa and
Olivier Gandrillon},
title = {{SQUAT:} {A} web tool to mine human, murine and avian {SAGE} data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-378},
doi = {10.1186/1471-2105-9-378},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LeyritzSBKRBBPG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Li08,
author = {Cheng Li},
title = {Automating dChip: toward reproducible sharing of microarray data analysis},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-231},
doi = {10.1186/1471-2105-9-231},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Li08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiBSBMBFML08,
author = {Kelvin Li and
Anushka Brownley and
Timothy B. Stockwell and
Karen Beeson and
Tina C. McIntosh and
Dana Busam and
Steve Ferriera and
Sean Murphy and
Samuel Levy},
title = {Novel computational methods for increasing {PCR} primer design effectiveness
in directed sequencing},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-191},
doi = {10.1186/1471-2105-9-191},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiBSBMBFML08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiBWWGSM08,
author = {Cheng Li and
Rameen Beroukhim and
Barbara A. Weir and
Wendy Winckler and
Levi A. Garraway and
William R. Sellers and
Matthew Meyerson},
title = {Major copy proportion analysis of tumor samples using {SNP} arrays},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-204},
doi = {10.1186/1471-2105-9-204},
timestamp = {Tue, 26 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LiBWWGSM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiC08,
author = {Jing Li and
Yixuan Chen},
title = {Generating samples for association studies based on HapMap data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-44},
doi = {10.1186/1471-2105-9-44},
timestamp = {Fri, 19 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LiC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiCVWSOWOPGOK08,
author = {Peter Li and
Juan I. Castrillo and
Giles Velarde and
Ingo Wassink and
Stian Soiland{-}Reyes and
Stuart Owen and
David Withers and
Tom Oinn and
Matthew R. Pocock and
Carole A. Goble and
Stephen G. Oliver and
Douglas B. Kell},
title = {Performing statistical analyses on quantitative data in Taverna workflows:
An example using {R} and maxdBrowse to identify differentially-expressed
genes from microarray data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-334},
doi = {10.1186/1471-2105-9-334},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiCVWSOWOPGOK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiCWHC08,
author = {Min Li and
Jianer Chen and
Jianxin Wang and
Bin Hu and
Gang Chen},
title = {Modifying the DPClus algorithm for identifying protein complexes based
on new topological structures},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-398},
doi = {10.1186/1471-2105-9-398},
timestamp = {Fri, 21 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LiCWHC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiSJ08,
author = {Nan Li and
Zhonghua Sun and
Fan Jiang},
title = {Prediction of protein-protein binding site by using core interface
residue and support vector machine},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-553},
doi = {10.1186/1471-2105-9-553},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiSJ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LianLLYCF08,
author = {Ie{-}Bin Lian and
Yi{-}Hsien Lin and
Ying{-}Chao Lin and
Hsin{-}Chou Yang and
Chee{-}Jang Chang and
Cathy S. J. Fann},
title = {Using the longest significance run to estimate region-specific p-values
in genetic association mapping studies},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-246},
doi = {10.1186/1471-2105-9-246},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LianLLYCF08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiangK08,
author = {Yulan Liang and
Arpad Kelemen},
title = {Bayesian models and meta analysis for multiple tissue gene expression
data following corticosteroid administration},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-354},
doi = {10.1186/1471-2105-9-354},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiangK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Lin08,
author = {Jimmy Lin},
title = {PageRank without hyperlinks: Reranking with PubMed related article
networks for biomedical text retrieval},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-270},
doi = {10.1186/1471-2105-9-270},
timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Lin08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LinCWWXG08,
author = {Guohui Lin and
Zhipeng Cai and
Junfeng Wu and
Xiu{-}Feng Wan and
Lizhe Xu and
Randy Goebel},
title = {Identifying a few foot-and-mouth disease virus signature nucleotide
strings for computational genotyping},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-279},
doi = {10.1186/1471-2105-9-279},
timestamp = {Wed, 30 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LinCWWXG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LinDIHBL08,
author = {Rongheng Lin and
Shuangshuang Dai and
Richard D. Irwin and
Alexandra N. Heinloth and
Gary A. Boorman and
Leping Li},
title = {Gene set enrichment analysis for non-monotone association and multiple
experimental categories},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-481},
doi = {10.1186/1471-2105-9-481},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LinDIHBL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LinghuSHGXD08,
author = {Bolan Linghu and
Evan S. Snitkin and
Dustin T. Holloway and
Adam M. Gustafson and
Yu Xia and
Charles DeLisi},
title = {High-precision high-coverage functional inference from integrated
data sources},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-119},
doi = {10.1186/1471-2105-9-119},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LinghuSHGXD08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LingnerM08,
author = {Thomas Lingner and
Peter Meinicke},
title = {Word correlation matrices for protein sequence analysis and remote
homology detection},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-259},
doi = {10.1186/1471-2105-9-259},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LingnerM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuCPR08,
author = {Qian Liu and
Koby Crammer and
Fernando C. N. Pereira and
David S. Roos},
title = {Reranking candidate gene models with cross-species comparison for
improved gene prediction},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-433},
doi = {10.1186/1471-2105-9-433},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuCPR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuGL08,
author = {Dawei Liu and
Debashis Ghosh and
Xihong Lin},
title = {Estimation and testing for the effect of a genetic pathway on a disease
outcome using logistic kernel machine regression via logistic mixed
models},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-292},
doi = {10.1186/1471-2105-9-292},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuGL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuGTJJ08,
author = {Zhenqiu Liu and
Ronald B. Gartenhaus and
Ming Tan and
Feng Jiang and
Xiaoli Jiao},
title = {Gene and pathway identification with \emph{L}\({}_{\mbox{\emph{p }}}\)penalized
Bayesian logistic regression},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-412},
doi = {10.1186/1471-2105-9-412},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuGTJJ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuWLDW08,
author = {Bin Liu and
Xiaolong Wang and
Lei Lin and
Qiwen Dong and
Xuan Wang},
title = {A discriminative method for protein remote homology detection and
fold recognition combining Top-\emph{n}-grams and latent semantic
analysis},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-510},
doi = {10.1186/1471-2105-9-510},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuWLDW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuYCBZY08,
author = {Qi Liu and
Yu Yang and
Chun Chen and
Jiajun Bu and
Yin Zhang and
Xiuzi Ye},
title = {RNACompress: Grammar-based compression and informational complexity
measurement of {RNA} secondary structure},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-176},
doi = {10.1186/1471-2105-9-176},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuYCBZY08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuYZZQ08,
author = {Xiong Liu and
Xueping Yu and
Donald J. Zack and
Heng Zhu and
Jiang Qian},
title = {TiGER: {A} database for tissue-specific gene expression and regulation},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-271},
doi = {10.1186/1471-2105-9-271},
timestamp = {Tue, 02 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuYZZQ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LopesMC08,
author = {Fabr{\'{\i}}cio Martins Lopes and
David Correa Martins Jr. and
Roberto Marcondes Cesar Junior},
title = {Feature selection environment for genomic applications},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-451},
doi = {10.1186/1471-2105-9-451},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LopesMC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LopezBGCM08,
author = {Francisco{-}Javier Lopez and
Armando Blanco and
Fernando Garc{\'{\i}}a{-}Alcalde and
Carlos Cano and
Antonio Mar{\'{\i}}n},
title = {Fuzzy association rules for biological data analysis: {A} case study
on yeast},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-107},
doi = {10.1186/1471-2105-9-107},
timestamp = {Sun, 12 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LopezBGCM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LuLSDJPJRGSRR08,
author = {Ruixiao Lu and
Geun{-}Cheol Lee and
Michael Shultz and
Chris Dardick and
Kihong Jung and
Jirapa Phetsom and
Yi Jia and
Robert H. Rice and
Zelanna Goldberg and
Patrick S. Schnable and
Pamela C. Ronald and
David M. Rocke},
title = {Assessing probe-specific dye and slide biases in two-color microarray
data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-314},
doi = {10.1186/1471-2105-9-314},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LuLSDJPJRGSRR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LukeC08,
author = {Brian T. Luke and
Jack R. Collins},
title = {Examining the significance of fingerprint-based classifiers},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-545},
doi = {10.1186/1471-2105-9-545},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LukeC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LuoHW08,
author = {Weijun Luo and
Kurt D. Hankenson and
Peter J. Woolf},
title = {Learning transcriptional regulatory networks from high throughput
gene expression data using continuous three-way mutual information},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-467},
doi = {10.1186/1471-2105-9-467},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LuoHW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LutterUGOTLS08,
author = {Dominik Lutter and
Peter Ugocsai and
Margot Grandl and
Evelyn Orso and
Fabian J. Theis and
Elmar Wolfgang Lang and
Gerd Schmitz},
title = {Analyzing {M-CSF} dependent monocyte/macrophage differentiation: Expression
modes and meta-modes derived from an independent component analysis},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-100},
doi = {10.1186/1471-2105-9-100},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LutterUGOTLS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MaRDGD08,
author = {Li Ma and
H. Birali Runesha and
Daniel Dvorkin and
John R. Garbe and
Yang Da},
title = {Parallel and serial computing tools for testing single-locus and epistatic
{SNP} effects of quantitative traits in genome-wide association studies},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-315},
doi = {10.1186/1471-2105-9-315},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MaRDGD08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MaierLSFGA08,
author = {Holger Maier and
Christoph Lengger and
Bruno Simic and
Helmut Fuchs and
Val{\'{e}}rie Gailus{-}Durner and
Martin Hrab{\'{e}} de Angelis},
title = {MausDB: An open source application for phenotype data and mouse colony
management in large-scale mouse phenotyping projects},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-169},
doi = {10.1186/1471-2105-9-169},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/MaierLSFGA08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MaierWSB08,
author = {Donald Maier and
Farrell Wymore and
Gavin Sherlock and
Catherine A. Ball},
title = {The XBabelPhish {MAGE-ML} and {XML} Translator},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-28},
doi = {10.1186/1471-2105-9-28},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MaierWSB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MannWB08,
author = {Martin Mann and
Sebastian Will and
Rolf Backofen},
title = {CPSP-tools - Exact and complete algorithms for high-throughput 3D
lattice protein studies},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-230},
doi = {10.1186/1471-2105-9-230},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MannWB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ManningJB08,
author = {Jonathan R. Manning and
Emily R. Jefferson and
Geoffrey J. Barton},
title = {The contrasting properties of conservation and correlated phylogeny
in protein functional residue prediction},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-51},
doi = {10.1186/1471-2105-9-51},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ManningJB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ManoharanSYP08,
author = {Aswath Manoharan and
Jeannie A. Stamberger and
YuanYuan Yu and
Andreas Paepcke},
title = {Optimizations for the EcoPod field identification tool},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-150},
doi = {10.1186/1471-2105-9-150},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ManoharanSYP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MartheyARGGFLGLC08,
author = {Sylvain Marthey and
Gabriela Aguileta and
Fran{\c{c}}ois Rodolphe and
Annie Gendrault and
Tatiana Giraud and
Elisabeth Fournier and
Manuela Lopez{-}Villavicencio and
Ang{\'{e}}lique Gautier and
Marc{-}Henri Lebrun and
H{\'{e}}l{\`{e}}ne Chiapello},
title = {{FUNYBASE:} a FUNgal phYlogenomic dataBASE},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-456},
doi = {10.1186/1471-2105-9-456},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MartheyARGGFLGLC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Martin-MagnietteABEMRD08,
author = {Marie{-}Laure Martin{-}Magniette and
Julie Aubert and
Avner Bar{-}Hen and
Samira Elftieh and
Fr{\'{e}}d{\'{e}}ric Magniette and
Jean{-}Pierre Renou and
Jean{-}Jacques Daudin},
title = {Normalization for triple-target microarray experiments},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-216},
doi = {10.1186/1471-2105-9-216},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Martin-MagnietteABEMRD08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MarttinenBHDMC08,
author = {Pekka Marttinen and
Adam Baldwin and
William P. Hanage and
Chris Dowson and
Eshwar Mahenthiralingam and
Jukka Corander},
title = {Bayesian modeling of recombination events in bacterial populations},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-421},
doi = {10.1186/1471-2105-9-421},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MarttinenBHDMC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Mary-HuardAMSD08,
author = {Tristan Mary{-}Huard and
Julie Aubert and
Nadera Mansouri{-}Attia and
Olivier Sandra and
Jean{-}Jacques Daudin},
title = {Statistical methodology for the analysis of dye-switch microarray
experiments},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-98},
doi = {10.1186/1471-2105-9-98},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Mary-HuardAMSD08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/McCraeC08,
author = {John P. McCrae and
Nigel Collier},
title = {Synonym set extraction from the biomedical literature by lexical pattern
discovery},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-159},
doi = {10.1186/1471-2105-9-159},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/McCraeC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/McMillanM08,
author = {Lisa E. M. McMillan and
Andrew C. R. Martin},
title = {Automatically extracting functionally equivalent proteins from SwissProt},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-418},
doi = {10.1186/1471-2105-9-418},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/McMillanM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MechanicLGCH08,
author = {Leah E. Mechanic and
Brian T. Luke and
Julie E. Goodman and
Stephen J. Chanock and
Curtis C. Harris},
title = {Polymorphism Interaction Analysis {(PIA):} a method for investigating
complex gene-gene interactions},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-146},
doi = {10.1186/1471-2105-9-146},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/MechanicLGCH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MeereisK08,
author = {Florian Meereis and
Michael Kaufmann},
title = {Extension of the {COG} and arCOG databases by amino acid and nucleotide
sequences},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-479},
doi = {10.1186/1471-2105-9-479},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MeereisK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MelvinWLN08,
author = {Iain Melvin and
Jason Weston and
Christina S. Leslie and
William Stafford Noble},
title = {Combining classifiers for improved classification of proteins from
sequence or structure},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-389},
doi = {10.1186/1471-2105-9-389},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MelvinWLN08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MengBC08,
author = {Da Meng and
Shira L. Broschat and
Douglas R. Call},
title = {A Java-based tool for the design of classification microarrays},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-328},
doi = {10.1186/1471-2105-9-328},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MengBC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MengML08,
author = {Hailong Meng and
Edward Lenn Murrelle and
Guoya Li},
title = {Identification of a small optimal subset of CpG sites as bio-markers
from high-throughput {DNA} methylation profiles},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-457},
doi = {10.1186/1471-2105-9-457},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MengML08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MereghettiGPFG08,
author = {Paolo Mereghetti and
Maria Luisa Ganadu and
Elena Papaleo and
Piercarlo Fantucci and
Luca De Gioia},
title = {Validation of protein models by a neural network approach},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-66},
doi = {10.1186/1471-2105-9-66},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MereghettiGPFG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MerklZ08,
author = {Rainer Merkl and
Matthias Zwick},
title = {\emph{H2r}: Identification of evolutionary important residues by means
of an entropy based analysis of multiple sequence alignments},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-151},
doi = {10.1186/1471-2105-9-151},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MerklZ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MerschGSH08,
author = {Britta Mersch and
Alexander Rainer Tassilo Gepperth and
S{\'{a}}ndor Suhai and
Agnes Hotz{-}Wagenblatt},
title = {Automatic detection of exonic splicing enhancers (ESEs) using SVMs},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-369},
doi = {10.1186/1471-2105-9-369},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MerschGSH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MeulemanEGBRW08,
author = {Wouter Meuleman and
Judith Y. M. N. Engwegen and
Marie{-}Christine W. Gast and
Jos H. Beijnen and
Marcel J. T. Reinders and
Lodewyk F. A. Wessels},
title = {Comparison of normalisation methods for surface-enhanced laser desorption
and ionisation {(SELDI)} time-of-flight {(TOF)} mass spectrometry
data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-88},
doi = {10.1186/1471-2105-9-88},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MeulemanEGBRW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MeyerLB08,
author = {Patrick E. Meyer and
Fr{\'{e}}d{\'{e}}ric Lafitte and
Gianluca Bontempi},
title = {\emph{minet}: {A} R/Bioconductor Package for Inferring Large Transcriptional
Networks Using Mutual Information},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-461},
doi = {10.1186/1471-2105-9-461},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MeyerLB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MeyerPDOGKPRSWWE08,
author = {Folker Meyer and
Daniel Paarmann and
Mark D'Souza and
Robert Olson and
Elizabeth M. Glass and
Michael Kubal and
Tobias Paczian and
Alexis A. Rodriguez and
Rick Stevens and
Andreas Wilke and
Jared Wilkening and
Robert A. Edwards},
title = {The metagenomics {RAST} server - a public resource for the automatic
phylogenetic and functional analysis of metagenomes},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-386},
doi = {10.1186/1471-2105-9-386},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MeyerPDOGKPRSWWE08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MiklosNDH08,
author = {Istv{\'{a}}n Mikl{\'{o}}s and
{\'{A}}d{\'{a}}m Nov{\'{a}}k and
Bal{\'{a}}zs Dombai and
Jotun Hein},
title = {How reliably can we predict the reliability of protein structure predictions?},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-137},
doi = {10.1186/1471-2105-9-137},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MiklosNDH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MilenkovicLP08,
author = {Tijana Milenkovic and
Jason Lai and
Natasa Przulj},
title = {GraphCrunch: {A} tool for large network analyses},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-70},
doi = {10.1186/1471-2105-9-70},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MilenkovicLP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MistryP08,
author = {Meeta Mistry and
Paul Pavlidis},
title = {Gene Ontology term overlap as a measure of gene functional similarity},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-327},
doi = {10.1186/1471-2105-9-327},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MistryP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MoHGDWOL08,
author = {Fan Mo and
Xu Hong and
Feng Gao and
Lin Du and
Jun Wang and
Gilbert S. Omenn and
Biaoyang Lin},
title = {A compatible exon-exon junction database for the identification of
exon skipping events using tandem mass spectrum data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-537},
doi = {10.1186/1471-2105-9-537},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MoHGDWOL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Momen-RoknabadiSPM08,
author = {Amir Momen{-}Roknabadi and
Mehdi Sadeghi and
Hamid Pezeshk and
Sayed{-}Amir Marashi},
title = {Impact of residue accessible surface area on the prediction of protein
secondary structures},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-357},
doi = {10.1186/1471-2105-9-357},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Momen-RoknabadiSPM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MooreKIFM08,
author = {Jonathan D. Moore and
Shelagh P. Kell and
Jose M. Iriondo and
Brian V. Ford{-}Lloyd and
Nigel Maxted},
title = {{CWRML:} representing crop wild relative conservation and use data
in {XML}},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-116},
doi = {10.1186/1471-2105-9-116},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MooreKIFM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MoreauFPNNVLGM08,
author = {Violaine Moreau and
C{\'{e}}cile Fleury and
Dominique Piquer and
Christophe Nguyen and
Nicolas Novali and
Sylvie Villard and
Daniel Laune and
Claude Granier and
Franck Molina},
title = {{PEPOP:} Computational design of immunogenic peptides},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-71},
doi = {10.1186/1471-2105-9-71},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MoreauFPNNVLGM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MorettiLGBDKPM08,
author = {Stefano Moretti and
Danitsja van Leeuwen and
Hans Gmuender and
Stefano Bonassi and
Joost van Delft and
Jos Kleinjans and
Fioravante Patrone and
Domenico Franco Merlo},
title = {Combining Shapley value and statistics to the analysis of gene expression
data in children exposed to air pollution},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-361},
doi = {10.1186/1471-2105-9-361},
timestamp = {Tue, 04 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/MorettiLGBDKPM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MoscaBS08,
author = {Roberto Mosca and
Barbara Brannetti and
Thomas R. Schneider},
title = {Alignment of protein structures in the presence of domain motions},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-352},
doi = {10.1186/1471-2105-9-352},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MoscaBS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MullerCL08,
author = {Hans{-}Georg M{\"{u}}ller and
Jeng{-}Min Chiou and
Xiaoyan Leng},
title = {Inferring gene expression dynamics via functional regression analysis},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-60},
doi = {10.1186/1471-2105-9-60},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MullerCL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MyslyukDHHHZMU08,
author = {Inna Myslyuk and
Tirza Doniger and
Yair Horesh and
Avraham Hury and
Ran Hoffer and
Yaara Ziporen and
Shulamit Michaeli and
Ron Unger},
title = {Psiscan: a computational approach to identify H/ACA-like and AGA-like
non-coding {RNA} in trypanosomatid genomes},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-471},
doi = {10.1186/1471-2105-9-471},
timestamp = {Sun, 12 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MyslyukDHHHZMU08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NagarajanRSCF08,
author = {Sridevi Nagarajan and
Willem Rens and
James Stalker and
Tony Cox and
Malcolm A. Ferguson{-}Smith},
title = {Chromhome: {A} rich internet application for accessing comparative
chromosome homology maps},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-168},
doi = {10.1186/1471-2105-9-168},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NagarajanRSCF08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NagyHFTKBP08,
author = {Alinda Nagy and
H{\'{e}}di Hegyi and
Krisztina Farkas and
Hedvig Tordai and
Evelin Kozma and
L{\'{a}}szl{\'{o}} B{\'{a}}nyai and
L{\'{a}}szl{\'{o}} Patthy},
title = {Identification and correction of abnormal, incomplete and mispredicted
proteins in public databases},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-353},
doi = {10.1186/1471-2105-9-353},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/NagyHFTKBP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NaiserKMMO08,
author = {Thomas Naiser and
Jona Kayser and
Timo Mai and
Wolfgang Michel and
Albrecht Ott},
title = {Position dependent mismatch discrimination on {DNA} microarrays -
experiments and model},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-509},
doi = {10.1186/1471-2105-9-509},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NaiserKMMO08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NajafabadiTC08,
author = {Hamed Shateri Najafabadi and
Noorossadat Torabi and
Mahmood Chamankhah},
title = {Designing multiple degenerate primers via consecutive pairwise alignments},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-55},
doi = {10.1186/1471-2105-9-55},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NajafabadiTC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NanniL08,
author = {Loris Nanni and
Alessandra Lumini},
title = {A genetic approach for building different alphabets for peptide and
protein classification},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-45},
doi = {10.1186/1471-2105-9-45},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NanniL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NatowiczIHCGYCAPR08,
author = {Ren{\'{e}} Natowicz and
Roberto Incitti and
Euler Guimar{\~{a}}es Horta and
Beno{\^{\i}}t Charles and
Philippe Guinot and
Kai Yan and
Charles Coutant and
Fabrice Andr{\'{e}} and
Lajos Pusztai and
Roman Rouzier},
title = {Prediction of the outcome of preoperative chemotherapy in breast cancer
using {DNA} probes that provide information on both complete and incomplete
responses},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-149},
doi = {10.1186/1471-2105-9-149},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NatowiczIHCGYCAPR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NellakerUTK08,
author = {Christoffer Nell{\aa}ker and
Fredrik Uhrzander and
Joanna Tyrcha and
H{\aa}kan Karlsson},
title = {Mixture models for analysis of melting temperature data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-370},
doi = {10.1186/1471-2105-9-370},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NellakerUTK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NiLSZ08,
author = {Terri T. Ni and
William J. Lemon and
Yu Shyr and
Tao P. Zhong},
title = {Use of normalization methods for analysis of microarrays containing
a high degree of gene effects},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-505},
doi = {10.1186/1471-2105-9-505},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NiLSZ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Nicodemus08,
author = {Kristin K. Nicodemus},
title = {catmap: Case-control And {TDT} Meta-Analysis Package},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-130},
doi = {10.1186/1471-2105-9-130},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Nicodemus08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NielsenM08,
author = {Jesper Buus Nielsen and
Thomas Mailund},
title = {SNPFile - {A} software library and file format for large scale association
mapping and population genetics studies},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-526},
doi = {10.1186/1471-2105-9-526},
timestamp = {Thu, 11 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NielsenM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NiidaSITAZA08,
author = {Atsushi Niida and
Andrew D. Smith and
Seiya Imoto and
Shuichi Tsutsumi and
Hiroyuki Aburatani and
Michael Q. Zhang and
Tetsu Akiyama},
title = {Integrative bioinformatics analysis of transcriptional regulatory
programs in breast cancer cells},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-404},
doi = {10.1186/1471-2105-9-404},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NiidaSITAZA08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NikamanonPCKG08,
author = {Pornpat Nikamanon and
Elroy Pun and
Wayne Chou and
Marek D. Koter and
Paul D. Gershon},
title = {"TOF2H": {A} precision toolbox for rapid, high density/high coverage
hydrogen-deuterium exchange mass spectrometry via an {LC-MALDI} approach,
covering the data pipeline from spectral acquisition to {HDX} rate
analysis},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-387},
doi = {10.1186/1471-2105-9-387},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NikamanonPCKG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NixCB08,
author = {David A. Nix and
Samir J. Courdy and
Kenneth M. Boucher},
title = {Empirical methods for controlling false positives and estimating confidence
in ChIP-Seq peaks},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-523},
doi = {10.1186/1471-2105-9-523},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NixCB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NoirotGSG08,
author = {C{\'{e}}line Noirot and
Christine Gaspin and
Thomas Schiex and
J{\'{e}}r{\^{o}}me Gouzy},
title = {LeARN: a platform for detecting, clustering and annotating non-coding
RNAs},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-21},
doi = {10.1186/1471-2105-9-21},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/NoirotGSG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NowakP08,
author = {Robert M. Nowak and
Rafal Ploski},
title = {NullHap - a versatile application to estimate haplotype frequencies
from unphased genotypes in the presence of null alleles},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-330},
doi = {10.1186/1471-2105-9-330},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NowakP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NumataYNSIM08,
author = {Kazuyuki Numata and
Ryo Yoshida and
Masao Nagasaki and
Ayumu Saito and
Seiya Imoto and
Satoru Miyano},
title = {ExonMiner: Web service for analysis of GeneChip Exon array data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-494},
doi = {10.1186/1471-2105-9-494},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NumataYNSIM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ONeillGSJJH08,
author = {Kieran O'Neill and
Alexander Garc{\'{\i}}a Castro and
Anita Schwegmann and
Rafael C. Jim{\'{e}}nez and
Dan Jacobson and
Henning Hermjakob},
title = {OntoDas - a tool for facilitating the construction of complex queries
to the Gene Ontology},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-437},
doi = {10.1186/1471-2105-9-437},
timestamp = {Thu, 25 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ONeillGSJJH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/OhtsuboINT08,
author = {Yoshiyuki Ohtsubo and
Wakako Ikeda{-}Ohtsubo and
Yuji Nagata and
Masataka Tsuda},
title = {GenomeMatcher: {A} graphical user interface for {DNA} sequence comparison},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-376},
doi = {10.1186/1471-2105-9-376},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/OhtsuboINT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/OrtutayV08,
author = {Csaba P. Ortutay and
Mauno Vihinen},
title = {PseudoGeneQuest - Service for identification of different pseudogene
types in the human genome},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-299},
doi = {10.1186/1471-2105-9-299},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/OrtutayV08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/OscamouMYHLK08,
author = {Maribeth Oscamou and
Daniel McDonald and
Von Bing Yap and
Gavin A. Huttley and
Manuel E. Lladser and
Rob Knight},
title = {Comparison of methods for estimating the nucleotide substitution matrix},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-511},
doi = {10.1186/1471-2105-9-511},
timestamp = {Sun, 28 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/OscamouMYHLK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/OtiRHB08,
author = {Martin Oti and
Jeroen van Reeuwijk and
Martijn A. Huynen and
Han G. Brunner},
title = {Conserved co-expression for candidate disease gene prioritization},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-208},
doi = {10.1186/1471-2105-9-208},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/OtiRHB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/OttoGAMD08,
author = {Thomas D. Otto and
Leonardo H. F. Gomes and
Marcelo Alves{-}Ferreira and
Antonio Bas{\'{\i}}lio de Miranda and
Wim M. Degrave},
title = {ReRep: Computational detection of repetitive sequences in genome survey
sequences {(GSS)}},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-366},
doi = {10.1186/1471-2105-9-366},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/OttoGAMD08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/OttoGDM08,
author = {Thomas D. Otto and
Ana Carolina R. Guimar{\~{a}}es and
Wim M. Degrave and
Antonio Bas{\'{\i}}lio de Miranda},
title = {AnEnPi: identification and annotation of analogous enzymes},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-544},
doi = {10.1186/1471-2105-9-544},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/OttoGDM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PaarPBRGP08,
author = {Vladimir Paar and
Nenad Pavin and
Ivan Basar and
Marija Rosandic and
Matko Gluncic and
Nils Paar},
title = {Hierarchical structure of cascade of primary and secondary periodicities
in Fourier power spectrum of alphoid higher order repeats},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-466},
doi = {10.1186/1471-2105-9-466},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PaarPBRGP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PahleGDK08,
author = {J{\"{u}}rgen Pahle and
Anne K. Green and
C. Jane Dixon and
Ursula Kummer},
title = {Information transfer in signaling pathways: {A} study using coupled
simulated and experimental data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-139},
doi = {10.1186/1471-2105-9-139},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PahleGDK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PaladuguZRR08,
author = {Sri R. Paladugu and
Shan Zhao and
Animesh Ray and
Alpan Raval},
title = {Mining protein networks for synthetic genetic interactions},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-426},
doi = {10.1186/1471-2105-9-426},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PaladuguZRR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PanditS08,
author = {Shashi Bhushan Pandit and
Jeffrey Skolnick},
title = {Fr-TM-align: a new protein structural alignment method based on fragment
alignments and the TM-score},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-531},
doi = {10.1186/1471-2105-9-531},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PanditS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PangZ08,
author = {Herbert Pang and
Hongyu Zhao},
title = {Building pathway clusters from Random Forests classification using
class votes},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-87},
doi = {10.1186/1471-2105-9-87},
timestamp = {Thu, 28 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PangZ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ParodiPM08,
author = {Stefano Parodi and
Vito Pistoia and
Marco Muselli},
title = {Not proper {ROC} curves as new tool for the analysis of differentially
expressed genes in microarray experiments},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-410},
doi = {10.1186/1471-2105-9-410},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ParodiPM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ParraviciniRAF08,
author = {Chiara Parravicini and
Graziella Ranghino and
Maria P. Abbracchio and
Piercarlo Fantucci},
title = {{GPR17:} Molecular modeling and dynamics studies of the 3-D structure
and purinergic ligand binding features in comparison with {P2Y} receptors},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-263},
doi = {10.1186/1471-2105-9-263},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ParraviciniRAF08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PawlickiBD08,
author = {Sandrine Pawlicki and
Antony Le B{\'{e}}chec and
Christian Delamarche},
title = {AMYPdb: {A} database dedicated to amyloid precursor proteins},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-273},
doi = {10.1186/1471-2105-9-273},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PawlickiBD08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PawlowskiGMB08,
author = {Marcin Pawlowski and
Michal J. Gajda and
Ryszard Matlak and
Janusz M. Bujnicki},
title = {MetaMQAP: {A} meta-server for the quality assessment of protein models},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-403},
doi = {10.1186/1471-2105-9-403},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PawlowskiGMB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Pearson08,
author = {Richard D. Pearson},
title = {A comprehensive re-analysis of the Golden Spike data: Towards a benchmark
for differential expression methods},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-164},
doi = {10.1186/1471-2105-9-164},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Pearson08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PeltaGV08,
author = {David A. Pelta and
Juan Ram{\'{o}}n Gonz{\'{a}}lez and
J. Marcos Moreno{-}Vega},
title = {A simple and fast heuristic for protein structure comparison},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-161},
doi = {10.1186/1471-2105-9-161},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PeltaGV08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PelzKBS08,
author = {Carl R. Pelz and
Molly Kulesz{-}Martin and
Grover Bagby and
Rosalie C. Sears},
title = {Global rank-invariant set normalization {(GRSN)} to reduce systematic
distortions in microarray data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-520},
doi = {10.1186/1471-2105-9-520},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PelzKBS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PenchevaLPVM08,
author = {Tania Pencheva and
David Lagorce and
Ilza Pajeva and
Bruno O. Villoutreix and
Maria A. Miteva},
title = {{AMMOS:} Automated Molecular Mechanics Optimization tool for \emph{in
silico }Screening},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-438},
doi = {10.1186/1471-2105-9-438},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PenchevaLPVM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PencoBPMG08,
author = {Silvana Penco and
Paolo Massimo Buscema and
Maria Cristina Patrosso and
Alessandro Marocchi and
Enzo Grossi},
title = {New application of intelligent agents in sporadic amyotrophic lateral
sclerosis identifies unexpected specific genetic background},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-254},
doi = {10.1186/1471-2105-9-254},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PencoBPMG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PeresMSGM08,
author = {Sabine P{\'{e}}r{\`{e}}s and
Laurence Molina and
Nicolas Salvetat and
Claude Granier and
Franck Molina},
title = {A new method for 2D gel spot alignment: application to the analysis
of large sample sets in clinical proteomics},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-460},
doi = {10.1186/1471-2105-9-460},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PeresMSGM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PerisLC08,
author = {Piedachu Peris and
Dami{\'{a}}n L{\'{o}}pez and
Marcelino Campos},
title = {IgTM: An algorithm to predict transmembrane domains and topology in
proteins},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-367},
doi = {10.1186/1471-2105-9-367},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PerisLC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PerrodouCPGT08,
author = {Emmanuel Perrodou and
Claudia Chica and
Olivier Poch and
Toby J. Gibson and
Julie Dawn Thompson},
title = {A new protein linear motif benchmark for multiple sequence alignment
software},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-213},
doi = {10.1186/1471-2105-9-213},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PerrodouCPGT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PeterlongoNLNKG08,
author = {Pierre Peterlongo and
Laurent No{\'{e}} and
Dominique Lavenier and
Van Hoa Nguyen and
Gregory Kucherov and
Mathieu Giraud},
title = {Optimal neighborhood indexing for protein similarity search},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-534},
doi = {10.1186/1471-2105-9-534},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PeterlongoNLNKG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PetoKHJ08,
author = {Myron Peto and
Andrzej Kloczkowski and
Vasant G. Honavar and
Robert L. Jernigan},
title = {Use of machine learning algorithms to classify binary protein sequences
as highly-designable or poorly-designable},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-487},
doi = {10.1186/1471-2105-9-487},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PetoKHJ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PetterssonMBC08,
author = {Fredrik Pettersson and
Andrew P. Morris and
Michael R. Barnes and
Lon R. Cardon},
title = {Goldsurfer2 (Gs2): {A} comprehensive tool for the analysis and visualization
of genome wide association studies},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-138},
doi = {10.1186/1471-2105-9-138},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PetterssonMBC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PierleoniMC08,
author = {Andrea Pierleoni and
Pier Luigi Martelli and
Rita Casadio},
title = {PredGPI: a GPI-anchor predictor},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-392},
doi = {10.1186/1471-2105-9-392},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PierleoniMC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PirovanoFH08,
author = {Walter Pirovano and
K. Anton Feenstra and
Jaap Heringa},
title = {The meaning of alignment: lessons from structural diversity},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-556},
doi = {10.1186/1471-2105-9-556},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PirovanoFH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PodellGA08,
author = {Sheila Podell and
Terry Gaasterland and
Eric E. Allen},
title = {A database of phylogenetically atypical genes in archaeal and bacterial
genomes, identified using the \emph{DarkHorse }algorithm},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-419},
doi = {10.1186/1471-2105-9-419},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PodellGA08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PollockA08,
author = {Richard F. Pollock and
Boris Adryan},
title = {BioSAVE: Display of scored annotation within a sequence context},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-157},
doi = {10.1186/1471-2105-9-157},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PollockA08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PommerenckeSDTG08,
author = {Thora Pommerencke and
Thorsten Steinberg and
Hartmut Dickhaus and
Pascal Tomakidi and
Niels Grabe},
title = {Nuclear staining and relative distance for quantifying epidermal differentiation
in biomarker expression profiling},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-473},
doi = {10.1186/1471-2105-9-473},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PommerenckeSDTG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PonomarenkoBLFBSP08,
author = {Julia V. Ponomarenko and
Huynh{-}Hoa Bui and
Wei Li and
Nicholas Fusseder and
Philip E. Bourne and
Alessandro Sette and
Bj{\"{o}}rn Peters},
title = {ElliPro: a new structure-based tool for the prediction of antibody
epitopes},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-514},
doi = {10.1186/1471-2105-9-514},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PonomarenkoBLFBSP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PotapovGW08,
author = {Anatolij Potapov and
Bj{\"{o}}rn Goemann and
Edgar Wingender},
title = {The pairwise disconnectivity index as a new metric for the topological
analysis of regulatory networks},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-227},
doi = {10.1186/1471-2105-9-227},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PotapovGW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PotterYHL08,
author = {Dustin P. Potter and
Pearlly Yan and
Tim Hui{-}Ming Huang and
Shili Lin},
title = {Probe signal correction for differential methylation hybridization
experiments},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-453},
doi = {10.1186/1471-2105-9-453},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PotterYHL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PoulterRAS08,
author = {Graham L. Poulter and
Daniel L. Rubin and
Russ B. Altman and
Cathal Seoighe},
title = {MScanner: a classifier for retrieving Medline citations},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-108},
doi = {10.1186/1471-2105-9-108},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PoulterRAS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PozoPV08,
author = {Angela del Pozo and
Florencio Pazos and
Alfonso Valencia},
title = {Defining functional distances over Gene Ontology},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-50},
doi = {10.1186/1471-2105-9-50},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PozoPV08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PressonSPPWAP08,
author = {Angela P. Presson and
Eric M. Sobel and
Paivi Pajukanta and
Christopher Plaisier and
Daniel E. Weeks and
Karolina A. {\AA}berg and
Jeanette C. Papp},
title = {Merging microsatellite data: enhanced methodology and software to
combine genotype data for linkage and association analysis},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-317},
doi = {10.1186/1471-2105-9-317},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PressonSPPWAP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PuigboBG08,
author = {Pere Puigb{\`{o}} and
Ignacio G. Bravo and
Santiago Garcia{-}Vallv{\'{e}}},
title = {{E-CAI:} a novel server to estimate an expected value of Codon Adaptation
Index (eCAI)},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-65},
doi = {10.1186/1471-2105-9-65},
timestamp = {Thu, 12 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PuigboBG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RantalainenCELNHT08,
author = {Mattias Rantalainen and
Olivier Cloarec and
Timothy M. D. Ebbels and
Torbj{\"{o}}rn Lundstedt and
Jeremy K. Nicholson and
Elaine Holmes and
Johan Trygg},
title = {Piecewise multivariate modelling of sequential metabolic profiling
data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-105},
doi = {10.1186/1471-2105-9-105},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/RantalainenCELNHT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RantanenRJZMU08,
author = {Ari Rantanen and
Juho Rousu and
Paula Jouhten and
Nicola Zamboni and
Hannu Maaheimo and
Esko Ukkonen},
title = {An analytic and systematic framework for estimating metabolic flux
ratios from \({}^{\mbox{13}}\)\emph{C }tracer experiments},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-266},
doi = {10.1186/1471-2105-9-266},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/RantanenRJZMU08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RanzingerHWL08,
author = {Ren{\'{e}} Ranzinger and
Stephan Herget and
Thomas Wetter and
Claus{-}Wilhelm von der Lieth},
title = {\emph{GlycomeDB }- integration of open-access carbohydrate structure
databases},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-384},
doi = {10.1186/1471-2105-9-384},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RanzingerHWL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RazickMD08,
author = {Sabry Razick and
George Magklaras and
Ian M. Donaldson},
title = {iRefIndex: {A} consolidated protein interaction database with provenance},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-405},
doi = {10.1186/1471-2105-9-405},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/RazickMD08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ReddySOS08,
author = {Chilamakuri Chandra Sekhar Reddy and
Khader Shameer and
Bernard O. Offmann and
Ramanathan Sowdhamini},
title = {{PURE:} {A} webserver for the prediction of domains in unassigned
regions in proteins},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-281},
doi = {10.1186/1471-2105-9-281},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ReddySOS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ReidF08,
author = {Robert W. Reid and
Anthony A. Fodor},
title = {Determining gene expression on a single pair of microarrays},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-489},
doi = {10.1186/1471-2105-9-489},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ReidF08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RemeHVVPPGK08,
author = {Thierry R{\`{e}}me and
Dirk Hose and
John De Vos and
Aur{\'{e}}lien Vassal and
Pierre{-}Olivier Poulain and
V{\'{e}}ronique Pantesco and
Hartmut Goldschmidt and
Bernard Klein},
title = {A new method for class prediction based on signed-rank algorithms
applied to Affymetrix\({}^{\mbox{{\textregistered} }}\)microarray
experiments},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-16},
doi = {10.1186/1471-2105-9-16},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/RemeHVVPPGK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RenardKSSH08,
author = {Bernhard Y. Renard and
Marc Kirchner and
Hanno Steen and
Judith A. J. Steen and
Fred A. Hamprecht},
title = {{NITPICK:} peak identification for mass spectrometry data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-355},
doi = {10.1186/1471-2105-9-355},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RenardKSSH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RepsysMV08,
author = {Valdemaras Repsys and
Mindaugas Margelevicius and
Ceslovas Venclovas},
title = {Re-searcher: a system for recurrent detection of homologous protein
sequences},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-296},
doi = {10.1186/1471-2105-9-296},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RepsysMV08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ReyesFT08,
author = {Josephine F. Reyes and
Andrew R. Francis and
Mark M. Tanaka},
title = {Models of deletion for visualizing bacterial variation: an application
to tuberculosis spoligotypes},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-496},
doi = {10.1186/1471-2105-9-496},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ReyesFT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RichardsHOOJ08,
author = {Alexander L. Richards and
Peter Holmans and
Michael C. O'Donovan and
Michael J. Owen and
Lesley Jones},
title = {A comparison of four clustering methods for brain expression microarray
data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-490},
doi = {10.1186/1471-2105-9-490},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RichardsHOOJ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RichterLKKDPG08,
author = {Michael Richter and
Thierry Lombardot and
Ivaylo Kostadinov and
Renzo Kottmann and
Melissa Beth Duhaime and
J{\"{o}}rg Peplies and
Frank Oliver Gl{\"{o}}ckner},
title = {JCoast - {A} biologist-centric software tool for data mining and comparison
of prokaryotic (meta)genomes},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-177},
doi = {10.1186/1471-2105-9-177},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RichterLKKDPG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RocaAA08,
author = {Alberto I. Roca and
Albert E. Almada and
Aaron C. Abajian},
title = {ProfileGrids as a new visual representation of large multiple sequence
alignments: a case study of the RecA protein family},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-554},
doi = {10.1186/1471-2105-9-554},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RocaAA08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RochaMMPFNPR08,
author = {Miguel Rocha and
Paulo Maia and
Rui Mendes and
Jos{\'{e}} P. Pinto and
Eug{\'{e}}nio C. Ferreira and
Jens Nielsen and
Kiran Raosaheb Patil and
Isabel Rocha},
title = {Natural computation meta-heuristics for the in silico optimization
of microbial strains},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-499},
doi = {10.1186/1471-2105-9-499},
timestamp = {Wed, 12 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/RochaMMPFNPR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RocheGB08,
author = {Benjamin Roche and
Jean{-}Fran{\c{c}}ois Gu{\'{e}}gan and
Fran{\c{c}}ois Bousquet},
title = {Multi-agent systems in epidemiology: a first step for computational
biology in the study of vector-borne disease transmission},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-435},
doi = {10.1186/1471-2105-9-435},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RocheGB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RoshanCL08,
author = {Usman Roshan and
Satish Chikkagoudar and
Dennis R. Livesay},
title = {Searching for evolutionary distant {RNA} homologs within genomic sequences
using partition function posterior probabilities},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-61},
doi = {10.1186/1471-2105-9-61},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/RoshanCL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RoszikSV08,
author = {J{\'{a}}nos Roszik and
J{\'{a}}nos Sz{\"{o}}ll{\"{o}}si and
Gy{\"{o}}rgy Vereb},
title = {AccPbFRET: An ImageJ plugin for semi-automatic, fully corrected analysis
of acceptor photobleaching {FRET} images},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-346},
doi = {10.1186/1471-2105-9-346},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RoszikSV08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RothGD08,
author = {Alexander C. J. Roth and
Gaston H. Gonnet and
Christophe Dessimoz},
title = {Algorithm of {OMA} for large-scale orthology inference},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-518},
doi = {10.1186/1471-2105-9-518},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RothGD08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RougemontAIFXN08,
author = {Jacques Rougemont and
Arnaud Amzallag and
Christian Iseli and
Laurent Farinelli and
Ioannis Xenarios and
Felix Naef},
title = {Probabilistic base calling of Solexa sequencing data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-431},
doi = {10.1186/1471-2105-9-431},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RougemontAIFXN08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RoxasL08,
author = {Bryan A. P. Roxas and
Qingbo Li},
title = {Significance analysis of microarray for relative quantitation of {LC/MS}
data in proteomics},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-187},
doi = {10.1186/1471-2105-9-187},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RoxasL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RushtonBLBCT08,
author = {Paul J. Rushton and
Marta T. Bokowiec and
Thomas W. Laudeman and
Jennifer F. Brannock and
Xianfeng Chen and
Michael P. Timko},
title = {{TOBFAC:} the database of tobacco transcription factors},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-53},
doi = {10.1186/1471-2105-9-53},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/RushtonBLBCT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RussellOS08,
author = {David J. Russell and
Hasan H. Otu and
Khalid Sayood},
title = {Grammar-based distance in progressive multiple sequence alignment},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-306},
doi = {10.1186/1471-2105-9-306},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RussellOS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RyanZCCKLW08,
author = {Michael C. Ryan and
Barry Zeeberg and
Natasha J. Caplen and
James A. Cleland and
Ari B. Kahn and
Hongfang Liu and
John N. Weinstein},
title = {SpliceCenter: {A} suite of web-based bioinformatic applications for
evaluating the impact of alternative splicing on RT-PCR, RNAi, microarray,
and peptide-based studies},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-313},
doi = {10.1186/1471-2105-9-313},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/RyanZCCKLW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SalesTK08,
author = {Ana Paula Sales and
Georgia D. Tomaras and
Thomas B. Kepler},
title = {Improving peptide-MHC class {I} binding prediction for unbalanced
datasets},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-385},
doi = {10.1186/1471-2105-9-385},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SalesTK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SamTGGLM08,
author = {Vichetra Sam and
Chin{-}Hsien Tai and
Jean Garnier and
Jean{-}Fran{\c{c}}ois Gibrat and
Byungkook Lee and
Peter J. Munson},
title = {Towards an automatic classification of protein structural domains
based on structural similarity},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-74},
doi = {10.1186/1471-2105-9-74},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SamTGGLM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Sanchez-VilledaSFGYM08,
author = {Hector Sanchez{-}Villeda and
Steven G. Schroeder and
Sherry Flint{-}Garcia and
Katherine E. Guill and
Masanori Yamasaki and
Michael D. McMullen},
title = {DNAAlignEditor: {DNA} alignment editor tool},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-154},
doi = {10.1186/1471-2105-9-154},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Sanchez-VilledaSFGYM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SandveAD08,
author = {Geir Kjetil Sandve and
Osman Abul and
Finn Drabl{\o}s},
title = {Compo: composite motif discovery using discrete models},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-527},
doi = {10.1186/1471-2105-9-527},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SandveAD08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SantamariaTQ08,
author = {Rodrigo Santamar{\'{\i}}a and
Roberto Ther{\'{o}}n and
Luis Quintales},
title = {A visual analytics approach for understanding biclustering results
from microarray data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-247},
doi = {10.1186/1471-2105-9-247},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SantamariaTQ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SarkarECLD08,
author = {Indra Neil Sarkar and
Mary G. Egan and
Gloria M. Coruzzi and
Ernest K. Lee and
Robert DeSalle},
title = {Automated simultaneous analysis phylogenetics {(ASAP):} an enabling
tool for phlyogenomics},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-103},
doi = {10.1186/1471-2105-9-103},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SarkarECLD08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SatoMAS08,
author = {Kengo Sato and
Toutai Mituyama and
Kiyoshi Asai and
Yasubumi Sakakibara},
title = {Directed acyclic graph kernels for structural {RNA} analysis},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-318},
doi = {10.1186/1471-2105-9-318},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SatoMAS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SatyaZKR08,
author = {Ravi Vijaya Satya and
Nela Zavaljevski and
Kamal Kumar and
Jaques Reifman},
title = {A high-throughput pipeline for designing microarray-based pathogen
diagnostic assays},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-185},
doi = {10.1186/1471-2105-9-185},
timestamp = {Fri, 22 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SatyaZKR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SaundersBHKK08,
author = {Neil F. W. Saunders and
Ross I. Brinkworth and
Thomas Huber and
Bruce E. Kemp and
Bostjan Kobe},
title = {Predikin and PredikinDB: a computational framework for the prediction
of protein kinase peptide specificity and an associated database of
phosphorylation sites},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-245},
doi = {10.1186/1471-2105-9-245},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SaundersBHKK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SautonLVM08,
author = {Nicolas Sauton and
David Lagorce and
Bruno O. Villoutreix and
Maria A. Miteva},
title = {{MS-DOCK:} Accurate multiple conformation generator and rigid docking
protocol for multi-step virtual ligand screening},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-184},
doi = {10.1186/1471-2105-9-184},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SautonLVM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SchlossH08,
author = {Patrick D. Schloss and
Jo Handelsman},
title = {A statistical toolbox for metagenomics: assessing functional diversity
in microbial communities},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-34},
doi = {10.1186/1471-2105-9-34},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SchlossH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SchmidB08,
author = {Ralf Schmid and
Mark L. Blaxter},
title = {annot8r: GO, {EC} and {KEGG} annotation of {EST} datasets},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-180},
doi = {10.1186/1471-2105-9-180},
timestamp = {Fri, 17 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SchmidB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SchmidH08,
author = {Matthias Schmid and
Torsten Hothorn},
title = {Flexible boosting of accelerated failure time models},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-269},
doi = {10.1186/1471-2105-9-269},
timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SchmidH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SchranzYEKH08,
author = {Harold W. Schranz and
Von Bing Yap and
Simon Easteal and
Rob Knight and
Gavin A. Huttley},
title = {Pathological rate matrices: from primates to pathogens},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-550},
doi = {10.1186/1471-2105-9-550},
timestamp = {Sun, 28 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SchranzYEKH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SchreiberSBF08,
author = {Andreas W. Schreiber and
Neil J. Shirley and
Rachel A. Burton and
Geoffrey B. Fincher},
title = {Combining transcriptional datasets using the generalized singular
value decomposition},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-335},
doi = {10.1186/1471-2105-9-335},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SchreiberSBF08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Schulz-TrieglaffPGKR08,
author = {Ole Schulz{-}Trieglaff and
Nico Pfeifer and
Clemens Gr{\"{o}}pl and
Oliver Kohlbacher and
Knut Reinert},
title = {LC-MSsim - a simulation software for liquid chromatography mass spectrometry
data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-423},
doi = {10.1186/1471-2105-9-423},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Schulz-TrieglaffPGKR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SchwenderI08,
author = {Holger Schwender and
Katja Ickstadt},
title = {Empirical Bayes analysis of single nucleotide polymorphisms},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-144},
doi = {10.1186/1471-2105-9-144},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SchwenderI08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ScornavaccaBLDR08,
author = {C{\'{e}}line Scornavacca and
Vincent Berry and
Vincent Lefort and
Emmanuel J. P. Douzery and
Vincent Ranwez},
title = {PhySIC{\_}IST: cleaning source trees to infer more informative supertrees},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-413},
doi = {10.1186/1471-2105-9-413},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ScornavaccaBLDR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SheariKKASPEM08,
author = {Armita Sheari and
Mehdi Kargar and
Ali Katanforoush and
Shahriar Arab and
Mehdi Sadeghi and
Hamid Pezeshk and
Changiz Eslahchi and
Sayed{-}Amir Marashi},
title = {A tale of two symmetrical tails: Structural and functional characteristics
of palindromes in proteins},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-274},
doi = {10.1186/1471-2105-9-274},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SheariKKASPEM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SheehanQGD08,
author = {Brendan Sheehan and
Aaron J. Quigley and
Benoit Gaudin and
Simon Dobson},
title = {A relation based measure of semantic similarity for Gene Ontology
annotations},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-468},
doi = {10.1186/1471-2105-9-468},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SheehanQGD08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ShenLW08,
author = {Li Shen and
Jie Liu and
Wei Wang},
title = {GBNet: Deciphering regulatory rules in the co-regulated genes using
a Gibbs sampler enhanced Bayesian network approach},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-395},
doi = {10.1186/1471-2105-9-395},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ShenLW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ShiZAWL08,
author = {Yi Shi and
Jianjun Zhou and
David Arndt and
David S. Wishart and
Guohui Lin},
title = {Protein contact order prediction from primary sequences},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-255},
doi = {10.1186/1471-2105-9-255},
timestamp = {Thu, 12 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ShiZAWL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ShiehCYHWL08,
author = {Grace S. Shieh and
Chung{-}Ming Chen and
Ching{-}Yun Yu and
Juiling Huang and
Woei{-}Fuh Wang and
Yi{-}Chen Lo},
title = {Inferring transcriptional compensation interactions in yeast via stepwise
structure equation modeling},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-134},
doi = {10.1186/1471-2105-9-134},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ShiehCYHWL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ShuBZW08,
author = {Wenjie Shu and
Xiaochen Bo and
Zhiqiang Zheng and
Shengqi Wang},
title = {A novel representation of {RNA} secondary structure based on element-contact
graphs},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-188},
doi = {10.1186/1471-2105-9-188},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ShuBZW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SinhaHPGPB08,
author = {Rileen Sinha and
Michael Hiller and
Rainer Pudimat and
Ulrike Gausmann and
Matthias Platzer and
Rolf Backofen},
title = {Improved identification of conserved cassette exons using Bayesian
networks},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-477},
doi = {10.1186/1471-2105-9-477},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SinhaHPGPB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SiposSAP08,
author = {Botond Sipos and
K{\'{a}}lm{\'{a}}n Somogyi and
Istv{\'{a}}n And{\'{o}} and
Zsolt P{\'{e}}nzes},
title = {t2prhd: a tool to study the patterns of repeat evolution},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-27},
doi = {10.1186/1471-2105-9-27},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SiposSAP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SivaganesanSVHS08,
author = {Mano Sivaganesan and
Shawn Seifring and
Manju Varma and
Richard A. Haugland and
Orin C. Shanks},
title = {A Bayesian method for calculating real-time quantitative {PCR} calibration
curves using absolute plasmid {DNA} standards},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-120},
doi = {10.1186/1471-2105-9-120},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SivaganesanSVHS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SlamaFL08,
author = {Patrick Slama and
Ioannis Filippis and
Michael Lappe},
title = {Detection of protein catalytic residues at high precision using local
network properties},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-517},
doi = {10.1186/1471-2105-9-517},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SlamaFL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SlawskiDB08,
author = {Martin Slawski and
Martin Daumer and
Anne{-}Laure Boulesteix},
title = {{CMA} - a comprehensive Bioconductor package for supervised classification
with high dimensional data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-439},
doi = {10.1186/1471-2105-9-439},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SlawskiDB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SmithBLPBL08,
author = {Robin P. Smith and
William J. Buchser and
Marcus B. Lemmon and
Jose R. Pardinas and
John L. Bixby and
Vance P. Lemmon},
title = {{EST} Express: PHP/MySQL based automated annotation of ESTs from expression
libraries},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-186},
doi = {10.1186/1471-2105-9-186},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SmithBLPBL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SmithBP08,
author = {Martin A. Smith and
Mathieu Blanchette and
Barbara Papadopoulou},
title = {Improving the prediction of mRNA extremities in the parasitic protozoan
\emph{Leishmania}},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-158},
doi = {10.1186/1471-2105-9-158},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SmithBP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SmithC08,
author = {Timothy D. Smith and
Richard G. H. Cotton},
title = {VariVis: a visualisation toolkit for variation databases},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-206},
doi = {10.1186/1471-2105-9-206},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SmithC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SmithSSLRGL08,
author = {David D. Smith and
P{\aa}l S{\ae}trom and
Ola R. Sn{\o}ve Jr. and
Cathryn Lundberg and
Guillermo E. Rivas and
Carlotta Glackin and
Garrett P. Larson},
title = {Meta-analysis of breast cancer microarray studies in conjunction with
conserved \emph{cis}-elements suggest patterns for coordinate regulation},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-63},
doi = {10.1186/1471-2105-9-63},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SmithSSLRGL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SmithXZ08,
author = {Andrew D. Smith and
Zhenyu Xuan and
Michael Q. Zhang},
title = {Using quality scores and longer reads improves accuracy of Solexa
read mapping},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-128},
doi = {10.1186/1471-2105-9-128},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SmithXZ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SohGTDATS08,
author = {Jung Soh and
Paul M. K. Gordon and
Morgan L. Taschuk and
Anguo Dong and
Andrew C. Ah{-}Seng and
Andrei L. Turinsky and
Christoph W. Sensen},
title = {Bluejay 1.0: genome browsing and comparison with rich customization
provision and dynamic resource linking},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-450},
doi = {10.1186/1471-2105-9-450},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SohGTDATS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SohnCKW08,
author = {Sunghwan Sohn and
Donald C. Comeau and
Won Kim and
W. John Wilbur},
title = {Abbreviation definition identification based on automatic precision
estimates},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-402},
doi = {10.1186/1471-2105-9-402},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SohnCKW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SongB08,
author = {Sarah Song and
Michael A. Black},
title = {Microarray-based gene set analysis: a comparison of current methods},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-502},
doi = {10.1186/1471-2105-9-502},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SongB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SoutoCALS08,
author = {Marc{\'{\i}}lio Carlos Pereira de Souto and
Ivan G. Costa and
Daniel S. A. de Araujo and
Teresa Bernarda Ludermir and
Alexander Schliep},
title = {Clustering cancer gene expression data: a comparative study},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-497},
doi = {10.1186/1471-2105-9-497},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SoutoCALS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SparksB08,
author = {Michael E. Sparks and
Volker Brendel},
title = {MetWAMer: eukaryotic translation initiation site prediction},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-381},
doi = {10.1186/1471-2105-9-381},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SparksB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SpiessFR08,
author = {Andrej{-}Nikolai Spiess and
Caroline Feig and
Christian Ritz},
title = {Highly accurate sigmoidal fitting of real-time {PCR} data by introducing
a parameter for asymmetry},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-221},
doi = {10.1186/1471-2105-9-221},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SpiessFR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/StaafVLJRHBR08,
author = {Johan Staaf and
Johan Vallon{-}Christersson and
David Lindgren and
Gunnar Juliusson and
Richard Rosenquist and
Mattias H{\"{o}}glund and
{\AA}ke Borg and
Markus Ringn{\'{e}}r},
title = {Normalization of Illumina Infinium whole-genome {SNP} data improves
copy number estimates and allelic intensity ratios},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-409},
doi = {10.1186/1471-2105-9-409},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/StaafVLJRHBR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/StanislausARMMA08,
author = {Romesh Stanislaus and
John M. Arthur and
Balaji Rajagopalan and
Rick Moerschell and
Brian McGlothlen and
Jonas S. Almeida},
title = {An open-source representation for 2-DE-centric proteomics and support
infrastructure for data storage and analysis},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-4},
doi = {10.1186/1471-2105-9-4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/StanislausARMMA08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/StanislausCDCHMA08,
author = {Romesh Stanislaus and
Mark Carey and
Helena F. Deus and
Kevin R. Coombes and
Bryan T. J. Hennessy and
Gordon B. Mills and
Jonas S. Almeida},
title = {{RPPAML/RIMS:} {A} metadata format and an information management system
for reverse phase protein arrays},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-555},
doi = {10.1186/1471-2105-9-555},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/StanislausCDCHMA08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/StatnikovWA08,
author = {Alexander R. Statnikov and
Lily Wang and
Constantin F. Aliferis},
title = {A comprehensive comparison of random forests and support vector machines
for microarray-based cancer classification},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-319},
doi = {10.1186/1471-2105-9-319},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/StatnikovWA08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Strimmer08,
author = {Korbinian Strimmer},
title = {A unified approach to false discovery rate estimation},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-303},
doi = {10.1186/1471-2105-9-303},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Strimmer08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/StroblBKAZ08,
author = {Carolin Strobl and
Anne{-}Laure Boulesteix and
Thomas Kneib and
Thomas Augustin and
Achim Zeileis},
title = {Conditional variable importance for random forests},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-307},
doi = {10.1186/1471-2105-9-307},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/StroblBKAZ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SturmBGHHLPSZRK08,
author = {Marc Sturm and
Andreas Bertsch and
Clemens Gr{\"{o}}pl and
Andreas Hildebrandt and
Rene Hussong and
Eva Lange and
Nico Pfeifer and
Ole Schulz{-}Trieglaff and
Alexandra Zerck and
Knut Reinert and
Oliver Kohlbacher},
title = {OpenMS - An open-source software framework for mass spectrometry},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-163},
doi = {10.1186/1471-2105-9-163},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SturmBGHHLPSZRK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SuWBC08,
author = {Shu{-}Yi Su and
Jonathan White and
David J. Balding and
Lachlan J. M. Coin},
title = {Inference of haplotypic phase and missing genotypes in polyploid organisms
and variable copy number genomic regions},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-513},
doi = {10.1186/1471-2105-9-513},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SuWBC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SunFOW08,
author = {Hong Sun and
Hakan Ferhatosmanoglu and
Motonori Ota and
Yusu Wang},
title = {An enhanced partial order curve comparison algorithm and its application
to analyzing protein folding trajectories},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-344},
doi = {10.1186/1471-2105-9-344},
timestamp = {Mon, 02 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SunFOW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SunJY08,
author = {Liang Sun and
Shuiwang Ji and
Jieping Ye},
title = {Adaptive diffusion kernel learning from biological networks for protein
function prediction},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-162},
doi = {10.1186/1471-2105-9-162},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SunJY08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SykesW08,
author = {Michael T. Sykes and
James R. Williamson},
title = {Envelope: interactive software for modeling and fitting complex isotope
distributions},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-446},
doi = {10.1186/1471-2105-9-446},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SykesW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TabeiKKA08,
author = {Yasuo Tabei and
Hisanori Kiryu and
Taishin Kin and
Kiyoshi Asai},
title = {A fast structural multiple alignment method for long {RNA} sequences},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-33},
doi = {10.1186/1471-2105-9-33},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TabeiKKA08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TalyMG08,
author = {Jean{-}Fran{\c{c}}ois Taly and
Antoine Marin and
Jean{-}Fran{\c{c}}ois Gibrat},
title = {Can molecular dynamics simulations help in discriminating correct
from erroneous protein 3D models?},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-6},
doi = {10.1186/1471-2105-9-6},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TalyMG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TanFX08,
author = {Yuan{-}De Tan and
Myriam Fornage and
Hongyan Xu},
title = {Ranking analysis of \emph{F}-statistics for microarray data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-142},
doi = {10.1186/1471-2105-9-142},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TanFX08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TanJ08,
author = {Ching{-}Wai Tan and
David T. Jones},
title = {Using neural networks and evolutionary information in decoy discrimination
for protein tertiary structure prediction},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-94},
doi = {10.1186/1471-2105-9-94},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TanJ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TanSBF08,
author = {Meng Piao Tan and
Erin N. Smith and
James R. Broach and
Christodoulos A. Floudas},
title = {Microarray data mining: {A} novel optimization-based approach to uncover
biologically coherent structures},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-268},
doi = {10.1186/1471-2105-9-268},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TanSBF08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Taneda08,
author = {Akito Taneda},
title = {An efficient genetic algorithm for structural {RNA} pairwise alignment
and its application to non-coding {RNA} discovery in yeast},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-521},
doi = {10.1186/1471-2105-9-521},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Taneda08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TangBJLVLEV08,
author = {Jifeng Tang and
Samantha J. Baldwin and
Jeanne M. E. Jacobs and
C. Gerard van der Linden and
Roeland E. Voorrips and
Jack A. M. Leunissen and
Herman van Eck and
Ben Vosman},
title = {Large-scale identification of polymorphic microsatellites using an
\emph{in silico }approach},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-374},
doi = {10.1186/1471-2105-9-374},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TangBJLVLEV08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TannerA08,
author = {Stephen W. Tanner and
Pankaj Agarwal},
title = {Gene Vector Analysis (Geneva): {A} unified method to detect differentially-regulated
gene sets and similar microarray experiments},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-348},
doi = {10.1186/1471-2105-9-348},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TannerA08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TautenhahnBN08,
author = {Ralf Tautenhahn and
Christoph B{\"{o}}ttcher and
Steffen Neumann},
title = {Highly sensitive feature detection for high resolution {LC/MS}},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-504},
doi = {10.1186/1471-2105-9-504},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TautenhahnBN08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TempelJJ08,
author = {S{\'{e}}bastien Tempel and
Matthew Jurka and
Jerzy Jurka},
title = {VisualRepbase: an interface for the study of occurrences of transposable
element families},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-345},
doi = {10.1186/1471-2105-9-345},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TempelJJ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TeyraPAP08,
author = {Joan Teyra and
Maciej Paszkowski{-}Rogacz and
Gerd Anders and
M. Teresa Pisabarro},
title = {{SCOWLP} classification: Structural comparison and analysis of protein
binding regions},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-9},
doi = {10.1186/1471-2105-9-9},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/TeyraPAP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ThanRN08,
author = {Cuong Than and
Derek A. Ruths and
Luay Nakhleh},
title = {PhyloNet: a software package for analyzing and reconstructing reticulate
evolutionary relationships},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-322},
doi = {10.1186/1471-2105-9-322},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ThanRN08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TienLWC08,
author = {Yin{-}Jing Tien and
Yun{-}Shien Lee and
Han{-}Ming Wu and
Chun{-}Houh Chen},
title = {Methods for simultaneously identifying coherent local clusters with
smooth global patterns in gene expression profiles},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-155},
doi = {10.1186/1471-2105-9-155},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/TienLWC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TimmSBKN08,
author = {Wiebke Timm and
Alexandra Scherbart and
Sebastian B{\"{o}}cker and
Oliver Kohlbacher and
Tim W. Nattkemper},
title = {Peak intensity prediction in {MALDI-TOF} mass spectrometry: {A} machine
learning study to support quantitative proteomics},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-443},
doi = {10.1186/1471-2105-9-443},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TimmSBKN08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TintleBDBHPT08,
author = {Nathan L. Tintle and
Aaron A. Best and
Matthew DeJongh and
Dirk Van Bruggen and
Fred Heffron and
Steffen Porwollik and
Ronald C. Taylor},
title = {Gene set analyses for interpreting microarray experiments on prokaryotic
organisms},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-469},
doi = {10.1186/1471-2105-9-469},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/TintleBDBHPT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TitulaerMSKBASKL08,
author = {Mark K. Titulaer and
Dana A. N. Mustafa and
Ivar Siccama and
Marco Konijnenburg and
Peter C. Burgers and
Arno C. Andeweg and
Peter A. E. Sillevis Smitt and
Johan M. Kros and
Theo M. Luider},
title = {A software application for comparing large numbers of high resolution
{MALDI-FTICR} {MS} spectra demonstrated by searching candidate biomarkers
for glioma blood vessel formation},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-133},
doi = {10.1186/1471-2105-9-133},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TitulaerMSKBASKL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ToV08,
author = {Cuong To and
Jiri Vohradsky},
title = {Supervised inference of gene-regulatory networks},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-2},
doi = {10.1186/1471-2105-9-2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ToV08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TomlinsonTACDBBTBBCMSAG08,
author = {Christopher D. Tomlinson and
Manjula Thimma and
Stelios Alexandrakis and
Tito Castillo and
Jayne L. Dennis and
Anthony Brooks and
Thomas Bradley and
Carly Turnbull and
Ekaterini Blaveri and
Geraint Barton and
Norie Chiba and
Klio Maratou and
Pat Soutter and
Timothy J. Aitman and
Laurence Game},
title = {MiMiR - an integrated platform for microarray data sharing, mining
and analysis},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-379},
doi = {10.1186/1471-2105-9-379},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/TomlinsonTACDBBTBBCMSAG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TouzainSDAKL08,
author = {Fabrice Touzain and
Sophie Schbath and
Isabelle Debled{-}Rennesson and
Bertrand Aigle and
Gregory Kucherov and
Pierre Leblond},
title = {SIGffRid: {A} tool to search for sigma factor binding sites in bacterial
genomes using comparative approach and biologically driven statistics},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-73},
doi = {10.1186/1471-2105-9-73},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TouzainSDAKL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TripathiKK08,
author = {Abhishek Tripathi and
Arto Klami and
Samuel Kaski},
title = {Simple integrative preprocessing preserves what is shared in data
sources},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-111},
doi = {10.1186/1471-2105-9-111},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TripathiKK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TruntzerMR08,
author = {Caroline Truntzer and
Delphine Maucort{-}Boulch and
Pascal Roy},
title = {Comparative optimism in models involving both classical clinical and
gene expression information},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-434},
doi = {10.1186/1471-2105-9-434},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TruntzerMR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TsaiLTCP08,
author = {Yu{-}Shuen Tsai and
Chin{-}Teng Lin and
George C. Tseng and
I{-}Fang Chung and
Nikhil R. Pal},
title = {Discovery of dominant and dormant genes from expression data using
a novel generalization of {SNR} for multi-class problems},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-425},
doi = {10.1186/1471-2105-9-425},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TsaiLTCP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TscherepanowJK08,
author = {Marko Tscherepanow and
Nickels Jensen and
Franz Kummert},
title = {An incremental approach to automated protein localisation},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-445},
doi = {10.1186/1471-2105-9-445},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/TscherepanowJK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TuchlerVGK08,
author = {Thomas T{\"{u}}chler and
Golda Velez and
Alexandra Graf and
David P. Kreil},
title = {BibGlimpse: The case for a light-weight reprint manager in distributed
literature research},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-406},
doi = {10.1186/1471-2105-9-406},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TuchlerVGK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TuikkalaENA08,
author = {Johannes Tuikkala and
Laura Elo and
Olli Nevalainen and
Tero Aittokallio},
title = {Missing value imputation improves clustering and interpretation of
gene expression microarray data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-202},
doi = {10.1186/1471-2105-9-202},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TuikkalaENA08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TungH08,
author = {Chun{-}Wei Tung and
Shinn{-}Ying Ho},
title = {Computational identification of ubiquitylation sites from protein
sequences},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-310},
doi = {10.1186/1471-2105-9-310},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/TungH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TuranalpC08,
author = {Mehmet E. Turanalp and
Tolga Can},
title = {Discovering functional interaction patterns in protein-protein interaction
networks},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-276},
doi = {10.1186/1471-2105-9-276},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TuranalpC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TzengLL08,
author = {Jengnan Tzeng and
Henry Horng{-}Shing Lu and
Wen{-}Hsiung Li},
title = {Multidimensional scaling for large genomic data sets},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-179},
doi = {10.1186/1471-2105-9-179},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TzengLL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/UvaR08,
author = {Paolo Uva and
Emanuele de Rinaldis},
title = {CrossHybDetector: detection of cross-hybridization events in {DNA}
microarray experiments},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-485},
doi = {10.1186/1471-2105-9-485},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/UvaR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VeberGBRS08,
author = {Philippe Veber and
Carito Guziolowski and
Michel Le Borgne and
Ovidiu Radulescu and
Anne Siegel},
title = {Inferring the role of transcription factors in regulatory networks},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-228},
doi = {10.1186/1471-2105-9-228},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/VeberGBRS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VeeramalaiYG08,
author = {Mallika Veeramalai and
Yuzhen Ye and
Adam Godzik},
title = {{TOPS++FATCAT:} Fast flexible structural alignment using constraints
derived from {TOPS+} Strings Model},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-358},
doi = {10.1186/1471-2105-9-358},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/VeeramalaiYG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VeraJS08,
author = {Gonzalo Vera and
Ritsert C. Jansen and
Remo Suppi},
title = {R/parallel - speeding up bioinformatics analysis with {R}},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-390},
doi = {10.1186/1471-2105-9-390},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/VeraJS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VerderioPGR08,
author = {Paolo Verderio and
Sara Pizzamiglio and
Fabio Gallo and
Simon C. Ramsden},
title = {{FCI:} an R-based algorithm for evaluating uncertainty of absolute
real-time {PCR} quantification},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-13},
doi = {10.1186/1471-2105-9-13},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/VerderioPGR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VergaraNFSM08,
author = {Ismael A. Vergara and
Tom{\'{a}}s Norambuena and
Evandro Ferrada and
Alex W. Slater and
Francisco Melo},
title = {StAR: a simple tool for the statistical comparison of {ROC} curves},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-265},
doi = {10.1186/1471-2105-9-265},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/VergaraNFSM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VermaTKVR08,
author = {Ruchi Verma and
Ajit Tiwari and
Sukhwinder Kaur and
Grish C. Varshney and
Gajendra P. S. Raghava},
title = {Identification of Proteins Secreted by Malaria Parasite into Erythrocyte
using {SVM} and {PSSM} profiles},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-201},
doi = {10.1186/1471-2105-9-201},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/VermaTKVR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VincentPLF08,
author = {Marc Vincent and
Andrea Passerini and
Matthieu Labb{\'{e}} and
Paolo Frasconi},
title = {A simplified approach to disulfide connectivity prediction from protein
sequences},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-20},
doi = {10.1186/1471-2105-9-20},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/VincentPLF08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VriesL08,
author = {John K. Vries and
Xiong Liu},
title = {Subfamily specific conservation profiles for proteins based on n-gram
patterns},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-72},
doi = {10.1186/1471-2105-9-72},
timestamp = {Tue, 02 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/VriesL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WahlNW08,
author = {Sebastian Aljoscha Wahl and
Katharina N{\"{o}}h and
Wolfgang Wiechert},
title = {\({}^{\mbox{13}}\)C labeling experiments at metabolic nonstationary
conditions: An exploratory study},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-152},
doi = {10.1186/1471-2105-9-152},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WahlNW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangMRS08,
author = {Ling Wang and
Monty A. Montano and
Matt Rarick and
Paola Sebastiani},
title = {Conditional clustering of temporal expression profiles},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-147},
doi = {10.1186/1471-2105-9-147},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WangMRS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WatanabeMV08,
author = {Ryosuke Watanabe and
Enrique Morett and
Edgar E. Vallejo},
title = {Inferring modules of functionally interacting proteins using the Bond
Energy Algorithm},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-285},
doi = {10.1186/1471-2105-9-285},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WatanabeMV08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WeddingtonSHRYG08,
author = {Nodin Weddington and
Alexander Stuy and
Ichiro Hiratani and
Tyrone Ryba and
Tomoki Yokochi and
David M. Gilbert},
title = {ReplicationDomain: a visualization tool and comparative database for
genome-wide replication timing data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-530},
doi = {10.1186/1471-2105-9-530},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WeddingtonSHRYG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WegrzynDVH08,
author = {Jill L. Wegrzyn and
Thomas M. Drudge and
Faramarz Valafar and
Vivian Hook},
title = {Bioinformatic analyses of mammalian 5'-UTR sequence properties of
mRNAs predicts alternative translation initiation sites},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-232},
doi = {10.1186/1471-2105-9-232},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WegrzynDVH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WeiFFN08,
author = {Ning Wei and
Erwin Flaschel and
Karl Friehs and
Tim W. Nattkemper},
title = {A machine vision system for automated non-invasive assessment of cell
viability via dark field microscopy, wavelet feature selection and
classification},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-449},
doi = {10.1186/1471-2105-9-449},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WeiFFN08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WeirauchWBS08,
author = {Matthew T. Weirauch and
Christopher K. Wong and
Alexandra B. Byrne and
Joshua M. Stuart},
title = {Information-based methods for predicting gene function from systematic
gene knock-downs},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-463},
doi = {10.1186/1471-2105-9-463},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WeirauchWBS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WendlW08,
author = {Michael C. Wendl and
Richard K. Wilson},
title = {Aspects of coverage in medical {DNA} sequencing},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-239},
doi = {10.1186/1471-2105-9-239},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WendlW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WestholmXRK08,
author = {Jakub Orzechowski Westholm and
Feifei Xu and
Hans Ronne and
Henryk Jan Komorowski},
title = {Genome-scale study of the importance of binding site context for transcription
factor binding and gene regulation},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-484},
doi = {10.1186/1471-2105-9-484},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WestholmXRK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WhelanK08,
author = {Ken E. Whelan and
Ross D. King},
title = {Using a logical model to predict the growth of yeast},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-97},
doi = {10.1186/1471-2105-9-97},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WhelanK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WhiteH08,
author = {W. Timothy J. White and
Michael D. Hendy},
title = {Compressing {DNA} sequence databases with coil},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-242},
doi = {10.1186/1471-2105-9-242},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WhiteH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WilmLS08,
author = {Andreas Wilm and
Kornelia Linnenbrink and
Gerhard Steger},
title = {ConStruct: Improved construction of {RNA} consensus structures},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-219},
doi = {10.1186/1471-2105-9-219},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WilmLS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WirawanKHS08,
author = {Adrianto Wirawan and
Chee Keong Kwoh and
Nim Tri Hieu and
Bertil Schmidt},
title = {{CBESW:} Sequence Alignment on the Playstation 3},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-377},
doi = {10.1186/1471-2105-9-377},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WirawanKHS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WonCRW08,
author = {Kyoung{-}Jae Won and
Iouri Chepelev and
Bing Ren and
Wei Wang},
title = {Prediction of regulatory elements in mammalian genomes using chromatin
signatures},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-547},
doi = {10.1186/1471-2105-9-547},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WonCRW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WuL08,
author = {Wei{-}Sheng Wu and
Wen{-}Hsiung Li},
title = {Systematic identification of yeast cell cycle transcription factors
using multiple data sources},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-522},
doi = {10.1186/1471-2105-9-522},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WuL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WuSYCL08,
author = {Tongtong Wu and
Wei Sun and
Shinsheng Yuan and
Chun{-}Houh Chen and
Ker{-}Chau Li},
title = {A method for analyzing censored survival phenotype with gene expression
data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-417},
doi = {10.1186/1471-2105-9-417},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WuSYCL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/XiR08,
author = {Yuanxin Xi and
David M. Rocke},
title = {Baseline Correction for {NMR} Spectroscopic Metabolomics Data Analysis},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-324},
doi = {10.1186/1471-2105-9-324},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/XiR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/XiaBTW08,
author = {Jianguo Xia and
Trent C. Bjorndahl and
Peter Tang and
David S. Wishart},
title = {MetaboMiner - semi-automated identification of metabolites from 2D
{NMR} spectra of complex biofluids},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-507},
doi = {10.1186/1471-2105-9-507},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/XiaBTW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/XiangDDHWFD08,
author = {Qian Xiang and
Xianhua Dai and
Yangyang Deng and
Caisheng He and
Jiang Wang and
Jihua Feng and
Zhiming Dai},
title = {Missing value imputation for microarray gene expression data using
histone acetylation information},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-252},
doi = {10.1186/1471-2105-9-252},
timestamp = {Tue, 19 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/XiangDDHWFD08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/XiongZMTX08,
author = {Huiling Xiong and
Dapeng Zhang and
Christopher J. Martyniuk and
Vance L. Trudeau and
Xuhua Xia},
title = {Using Generalized Procrustes Analysis {(GPA)} for normalization of
cDNA microarray data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-25},
doi = {10.1186/1471-2105-9-25},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/XiongZMTX08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/XuDZ08,
author = {Tao Xu and
LinFang Du and
Yan Zhou},
title = {Evaluation of GO-based functional similarity measures using \emph{S.
cerevisiae }protein interaction and expression profile data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-472},
doi = {10.1186/1471-2105-9-472},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/XuDZ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/XuHQYPP08,
author = {Jialin Xu and
Yun He and
Boqin Qiang and
Jiangang Yuan and
Xiaozhong Peng and
Xian{-}Ming Pan},
title = {A novel method for high accuracy sumoylation site prediction from
protein sequences},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-8},
doi = {10.1186/1471-2105-9-8},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/XuHQYPP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/XuTWG08,
author = {Lei Xu and
Aik Choon Tan and
Raimond L. Winslow and
Donald Geman},
title = {Merging microarray data from separate breast cancer studies provides
a robust prognostic test},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-125},
doi = {10.1186/1471-2105-9-125},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/XuTWG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/XuYF08,
author = {Hua Xu and
Lanhao Yang and
Michael A. Freitas},
title = {A robust linear regression based algorithm for automated evaluation
of peptide identifications from shotgun proteomics by use of reversed-phase
liquid chromatography retention time},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-347},
doi = {10.1186/1471-2105-9-347},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/XuYF08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YanHW08,
author = {Changhui Yan and
Jing Hu and
Yingfeng Wang},
title = {Discrimination of outer membrane proteins with improved performance},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-47},
doi = {10.1186/1471-2105-9-47},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YanHW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YanS08,
author = {Xiting Yan and
Fengzhu Sun},
title = {Testing gene set enrichment for subset of genes: Sub-GSE},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-362},
doi = {10.1186/1471-2105-9-362},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YanS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YangHLLYDWCF08,
author = {Hsin{-}Chou Yang and
Mei{-}Chu Huang and
Ling{-}Hui Li and
Chien{-}Hsing Lin and
Alice L. T. Yu and
Mitchell B. Diccianni and
Jer{-}Yuarn Wu and
Yuan{-}Tsong Chen and
Cathy S. J. Fann},
title = {{MPDA:} Microarray pooled {DNA} analyzer},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-196},
doi = {10.1186/1471-2105-9-196},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/YangHLLYDWCF08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YangS08,
author = {Qingwu Yang and
Sing{-}Hoi Sze},
title = {Predicting protein folding pathways at the mesoscopic level based
on native interactions between secondary structure elements},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-320},
doi = {10.1186/1471-2105-9-320},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YangS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YangVHMWQ08,
author = {Ling Yang and
Thomas M. Vondriska and
Zhangang Han and
W. Robb MacLellan and
James N. Weiss and
Zhilin Qu},
title = {Deducing topology of protein-protein interaction networks from experimentally
measured sub-networks},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-301},
doi = {10.1186/1471-2105-9-301},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YangVHMWQ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YangZYAZ08,
author = {Jianyi Yang and
Yu Zhou and
Zu{-}Guo Yu and
Vo Anh and
Li{-}Qian Zhou},
title = {Human Pol {II} promoter recognition based on primary sequences and
free energy of dinucleotides},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-113},
doi = {10.1186/1471-2105-9-113},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YangZYAZ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YaoCSHLR08,
author = {Jianchao Yao and
Chunqi Chang and
Mari L. Salmi and
Yeung Sam Hung and
Ann E. Loraine and
Stanley J. Roux},
title = {Genome-scale cluster analysis of replicated microarrays using shrinkage
correlation coefficient},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-288},
doi = {10.1186/1471-2105-9-288},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/YaoCSHLR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YaoZS08,
author = {Xin{-}Qiu Yao and
Huaiqiu Zhu and
Zhen{-}Su She},
title = {A dynamic Bayesian network approach to protein secondary structure
prediction},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-49},
doi = {10.1186/1471-2105-9-49},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YaoZS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YeturuC08,
author = {Kalidas Yeturu and
Nagasuma R. Chandra},
title = {PocketMatch: {A} new algorithm to compare binding sites in protein
structures},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-543},
doi = {10.1186/1471-2105-9-543},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YeturuC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YiPL08,
author = {Sung{-}Gon Yi and
Taesung Park and
Jae K. Lee},
title = {Response projected clustering for direct association with physiological
and clinical response data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-76},
doi = {10.1186/1471-2105-9-76},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YiPL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YinZBLSPW08,
author = {Zheng Yin and
Xiaobo Zhou and
Chris Bakal and
Fuhai Li and
Youxian Sun and
Norbert Perrimon and
Stephen T. C. Wong},
title = {Using iterative cluster merging with improved gap statistics to perform
online phenotype discovery in the context of high-throughput RNAi
screens},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-264},
doi = {10.1186/1471-2105-9-264},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YinZBLSPW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YooHZZ08,
author = {Paul D. Yoo and
Yung Shwen Ho and
Bing Bing Zhou and
Albert Y. Zomaya},
title = {SiteSeek: Post-translational modification analysis using adaptive
locality-effective kernel methods and new profiles},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-272},
doi = {10.1186/1471-2105-9-272},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/YooHZZ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YooLKRK08,
author = {Jinho Yoo and
Youngbok Lee and
Yujung Kim and
Sun Young Rha and
Yangseok Kim},
title = {SNPAnalyzer 2.0: {A} web-based integrated workbench for linkage disequilibrium
analysis and association analysis},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-290},
doi = {10.1186/1471-2105-9-290},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YooLKRK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YoosephLS08,
author = {Shibu Yooseph and
Weizhong Li and
Granger G. Sutton},
title = {Gene identification and protein classification in microbial metagenomic
sequence data via incremental clustering},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-182},
doi = {10.1186/1471-2105-9-182},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YoosephLS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YouHGLMHLDA08,
author = {Frank M. You and
Naxin Huo and
Yong Qiang Gu and
Ming{-}Cheng Luo and
Yaqin Ma and
Dave Hane and
Gerard R. Lazo and
Jan Dvorak and
Olin D. Anderson},
title = {BatchPrimer3: {A} high throughput web application for {PCR} and sequencing
primer design},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-253},
doi = {10.1186/1471-2105-9-253},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YouHGLMHLDA08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YuCDYWLKG08,
author = {Wei Yu and
Melinda Clyne and
Siobhan M. Dolan and
Ajay Yesupriya and
Anja Wulf and
Tiebin Liu and
Muin J. Khoury and
Marta Gwinn},
title = {GAPscreener: An automatic tool for screening human genetic association
literature in PubMed using the support vector machine technique},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-205},
doi = {10.1186/1471-2105-9-205},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YuCDYWLKG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YuWLKG08,
author = {Wei Yu and
Anja Wulf and
Tiebin Liu and
Muin J. Khoury and
Marta Gwinn},
title = {Gene Prospector: An evidence gateway for evaluating potential susceptibility
genes and interacting risk factors for human diseases},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-528},
doi = {10.1186/1471-2105-9-528},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YuWLKG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YuZDJSR08,
author = {Chenggang Yu and
Nela Zavaljevski and
Valmik Desai and
Seth Johnson and
Fred J. Stevens and
Jaques Reifman},
title = {The development of {PIPA:} an integrated and automated pipeline for
genome-wide protein function annotation},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-52},
doi = {10.1186/1471-2105-9-52},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YuZDJSR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YuanLW08,
author = {Yinyin Yuan and
Chang{-}Tsun Li and
Roland Wilson},
title = {Partial mixture model for tight clustering of gene expression time-course},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-287},
doi = {10.1186/1471-2105-9-287},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YuanLW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZamboniKH08,
author = {Nicola Zamboni and
Anne K{\"{u}}mmel and
Matthias Heinemann},
title = {anNET: a tool for network-embedded thermodynamic analysis of quantitative
metabolome data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-199},
doi = {10.1186/1471-2105-9-199},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ZamboniKH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZaslavskyBT08,
author = {Leonid Zaslavsky and
Yiming Bao and
Tatiana A. Tatusova},
title = {Visualization of large influenza virus sequence datasets using adaptively
aggregated trees with sampling-based subscale representation},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-237},
doi = {10.1186/1471-2105-9-237},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ZaslavskyBT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Zhang08,
author = {Yang Zhang},
title = {{I-TASSER} server for protein 3D structure prediction},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-40},
doi = {10.1186/1471-2105-9-40},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Zhang08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangG08,
author = {Shu{-}Dong Zhang and
Timothy W. Gant},
title = {A simple and robust method for connecting small-molecule drugs using
gene-expression signatures},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-258},
doi = {10.1186/1471-2105-9-258},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangKJWR08,
author = {Shuxing Zhang and
Kamal Kumar and
Xiaohui Jiang and
Anders Wallqvist and
Jaques Reifman},
title = {{DOVIS:} an implementation for high-throughput virtual screening using
AutoDock},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-126},
doi = {10.1186/1471-2105-9-126},
timestamp = {Fri, 22 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangKJWR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangLCD08,
author = {Feng Zhang and
Jianfeng Liu and
Jie Chen and
Hong{-}Wen Deng},
title = {{HAPSIMU:} a genetic simulation platform for population-based association
studies},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-331},
doi = {10.1186/1471-2105-9-331},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangLCD08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangLLXZH08,
author = {Jiyang Zhang and
Jianqi Li and
Xin Liu and
Hongwei Xie and
Yunping Zhu and
Fuchu He},
title = {A nonparametric model for quality control of database search results
in shotgun proteomics},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-29},
doi = {10.1186/1471-2105-9-29},
timestamp = {Tue, 20 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangLLXZH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangXRCR08,
author = {Yuji Zhang and
Jianhua Xuan and
Benildo de los Reyes and
Robert Clarke and
Habtom W. Ressom},
title = {Network motif-based identification of transcription factor-target
gene relationships by integrating multi-source biological data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-203},
doi = {10.1186/1471-2105-9-203},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangXRCR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangXSZS08,
author = {Song Zhang and
Xuefeng Xia and
Jincheng Shen and
Yun Zhou and
Zhirong Sun},
title = {DBMLoc: a Database of proteins with multiple subcellular localizations},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-127},
doi = {10.1186/1471-2105-9-127},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangXSZS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangZCSRK08,
author = {Hua Zhang and
Tuo Zhang and
Ke Chen and
Shiyi Shen and
Jishou Ruan and
Lukasz A. Kurgan},
title = {Sequence based residue depth prediction using evolutionary information
and predicted secondary structure},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-388},
doi = {10.1186/1471-2105-9-388},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangZCSRK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangZS08,
author = {Wensheng Zhang and
Sige Zou and
Jiuzhou Song},
title = {Term-tissue specific models for prediction of gene ontology biological
processes using transcriptional profiles of aging in drosophila melanogaster},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-129},
doi = {10.1186/1471-2105-9-129},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangZS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangZW08,
author = {Min Zhang and
Dabao Zhang and
Martin T. Wells},
title = {Variable selection for large \emph{p }small \emph{n }regression models
with incomplete data: Mapping {QTL} with epistases},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-251},
doi = {10.1186/1471-2105-9-251},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangZW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhaoWCA08,
author = {Xing{-}Ming Zhao and
Yong Wang and
Luonan Chen and
Kazuyuki Aihara},
title = {Gene function prediction using labeled and unlabeled data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-57},
doi = {10.1186/1471-2105-9-57},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhaoWCA08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhengK08,
author = {Ce Zheng and
Lukasz A. Kurgan},
title = {Prediction of beta-turns at over 80{\%} accuracy based on an ensemble
of predicted secondary structures and multiple alignments},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-430},
doi = {10.1186/1471-2105-9-430},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhengK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhengQYWXZL08,
author = {Guangyong Zheng and
Ziliang Qian and
Qing Yang and
Chaochun Wei and
Lu Xie and
Yangyong Zhu and
Yixue Li},
title = {The combination approach of {SVM} and {ECOC} for powerful identification
and classification of transcription factor},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-282},
doi = {10.1186/1471-2105-9-282},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhengQYWXZL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhouBF08,
author = {Cong Zhou and
Lucas D. Bowler and
Jianfeng Feng},
title = {A machine learning approach to explore the spectra intensity pattern
of peptides using tandem mass spectrometry data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-325},
doi = {10.1186/1471-2105-9-325},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhouBF08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhouBFS08,
author = {Miaomiao Zhou and
Jos Boekhorst and
Christof Francke and
Roland J. Siezen},
title = {LocateP: Genome-scale subcellular-location predictor for bacterial
proteins},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-173},
doi = {10.1186/1471-2105-9-173},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhouBFS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhouOX08,
author = {Fengfeng Zhou and
Victor Olman and
Ying Xu},
title = {Barcodes for genomes and applications},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-546},
doi = {10.1186/1471-2105-9-546},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhouOX08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhouSF08,
author = {Leming Zhou and
Jonathan Stanton and
Liliana Florea},
title = {Universal seeds for cDNA-to-genome comparison},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-36},
doi = {10.1186/1471-2105-9-36},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhouSF08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhuLMWXCHW08,
author = {Yitan Zhu and
Huai Li and
David J. Miller and
Zuyi Wang and
Jianhua Xuan and
Robert Clarke and
Eric P. Hoffman and
Yue Joseph Wang},
title = {caBIG\({}^{\mbox{TM}}\) {VISDA:} Modeling, visualization, and discovery
for cluster analysis of genomic data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-383},
doi = {10.1186/1471-2105-9-383},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhuLMWXCHW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhuM08,
author = {Manli Zhu and
Aleix M. Mart{\'{\i}}nez},
title = {Using the information embedded in the testing sample to break the
limits caused by the small sample size in microarray-based classification},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-280},
doi = {10.1186/1471-2105-9-280},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhuM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhuZX08,
author = {Yuerong Zhu and
Yuelin Zhu and
Wei Xu},
title = {EzArray: {A} web-based highly automated Affymetrix expression array
data management and analysis system},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-46},
doi = {10.1186/1471-2105-9-46},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhuZX08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZiZRK08,
author = {Zhike Zi and
Yanan Zheng and
Ann E. Rundell and
Edda Klipp},
title = {{SBML-SAT:} a systems biology markup language {(SBML)} based sensitivity
analysis tool},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-342},
doi = {10.1186/1471-2105-9-342},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ZiZRK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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