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@article{DBLP:journals/biomedsem/AbachaRMPS16,
  author       = {Asma Ben Abacha and
                  J{\'{u}}lio Cesar dos Reis and
                  Yassine Mrabet and
                  C{\'{e}}dric Pruski and
                  Marcos Da Silveira},
  title        = {Towards natural language question generation for the validation of
                  ontologies and mappings},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {48},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0089-6},
  doi          = {10.1186/S13326-016-0089-6},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/AbachaRMPS16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/AdebayoMTOBBBP16,
  author       = {Solomon Adebayo and
                  Kenneth McLeod and
                  Ilinca Tudose and
                  David Osumi{-}Sutherland and
                  Tony Burdett and
                  Richard A. Baldock and
                  Albert Burger and
                  Helen E. Parkinson},
  title        = {PhenoImageShare: an image annotation and query infrastructure},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {35},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0072-2},
  doi          = {10.1186/S13326-016-0072-2},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/AdebayoMTOBBBP16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/AhltorpSKHRA16,
  author       = {Magnus Ahltorp and
                  Maria Skeppstedt and
                  Shiho Kitajima and
                  Aron Henriksson and
                  Rafal Rzepka and
                  Kenji Araki},
  title        = {Expansion of medical vocabularies using distributional semantics on
                  Japanese patient blogs},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {58},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0093-x},
  doi          = {10.1186/S13326-016-0093-X},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/AhltorpSKHRA16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/AlamriS16,
  author       = {Abdulaziz Alamri and
                  Mark Stevenson},
  title        = {A corpus of potentially contradictory research claims from cardiovascular
                  research abstracts},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {36},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0083-z},
  doi          = {10.1186/S13326-016-0083-Z},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/AlamriS16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/BaekP16,
  author       = {Seung{-}Cheol Baek and
                  Jong{-}Chan Park},
  title        = {Making adjustments to event annotations for improved biological event
                  extraction},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {55},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0094-9},
  doi          = {10.1186/S13326-016-0094-9},
  timestamp    = {Thu, 04 Apr 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/BaekP16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/BamparopoulosKB16,
  author       = {Giorgos Bamparopoulos and
                  Evdokimos I. Konstantinidis and
                  Charalampos Bratsas and
                  Panagiotis D. Bamidis},
  title        = {Towards exergaming commons: composing the exergame ontology for publishing
                  open game data},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {4},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0046-4},
  doi          = {10.1186/S13326-016-0046-4},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/BamparopoulosKB16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/BamparopoulosKB16a,
  author       = {Giorgos Bamparopoulos and
                  Evdokimos I. Konstantinidis and
                  Charalampos Bratsas and
                  Panagiotis D. Bamidis},
  title        = {Erratum to: Towards exergaming commons: composing the exergame ontology
                  for publishing open game data},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {31},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0082-0},
  doi          = {10.1186/S13326-016-0082-0},
  timestamp    = {Mon, 03 Jan 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/biomedsem/BamparopoulosKB16a.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/BastosSCC16,
  author       = {Hugo P. Bastos and
                  Lisete Sousa and
                  Luka A. Clarke and
                  Francisco M. Couto},
  title        = {Functional coherence metrics in protein families},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {41},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0076-y},
  doi          = {10.1186/S13326-016-0076-Y},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/BastosSCC16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/BelloE16,
  author       = {Susan M. Bello and
                  Janan T. Eppig},
  title        = {Inferring gene-to-phenotype and gene-to-disease relationships at Mouse
                  Genome Informatics: challenges and solutions},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {14},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0054-4},
  doi          = {10.1186/S13326-016-0054-4},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/BelloE16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/BergesABGI16,
  author       = {Idoia Berges and
                  David Ant{\'{o}}n and
                  Jes{\'{u}}s Berm{\'{u}}dez and
                  Alfredo Go{\~{n}}i and
                  Arantza Illarramendi},
  title        = {TrhOnt: building an ontology to assist rehabilitation processes},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {60},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0104-y},
  doi          = {10.1186/S13326-016-0104-Y},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/BergesABGI16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/BlankCMW16,
  author       = {Carrine E. Blank and
                  Hong Cui and
                  Lisa R. Moore and
                  Ramona L. Walls},
  title        = {MicrO: an ontology of phenotypic and metabolic characters, assays,
                  and culture media found in prokaryotic taxonomic descriptions},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {18},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0060-6},
  doi          = {10.1186/S13326-016-0060-6},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/BlankCMW16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/BoekerFBS16,
  author       = {Martin Boeker and
                  F{\'{a}}bio Fran{\c{c}}a and
                  Peter Bronsert and
                  Stefan Schulz},
  title        = {{TNM-O:} ontology support for staging of malignant tumours},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {64:1--64:11},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0106-9},
  doi          = {10.1186/S13326-016-0106-9},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/BoekerFBS16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/BollemanMSBDBBH16,
  author       = {Jerven T. Bolleman and
                  Christopher J. Mungall and
                  Francesco Strozzi and
                  Joachim Baran and
                  Michel Dumontier and
                  Raoul Jean Pierre Bonnal and
                  Robert M. Buels and
                  Robert Hoehndorf and
                  Takatomo Fujisawa and
                  Toshiaki Katayama and
                  Peter J. A. Cock},
  title        = {{FALDO:} a semantic standard for describing the location of nucleotide
                  and protein feature annotation},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {39},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0067-z},
  doi          = {10.1186/S13326-016-0067-Z},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/BollemanMSBDBBH16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/BrochhausenZBWM16,
  author       = {Mathias Brochhausen and
                  Jie Zheng and
                  David L. Birtwell and
                  Heather Williams and
                  Anna Maria Masci and
                  Helena Judge Ellis and
                  Christian J. Stoeckert Jr.},
  title        = {OBIB-a novel ontology for biobanking},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {23},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0068-y},
  doi          = {10.1186/S13326-016-0068-Y},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/BrochhausenZBWM16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/ButtigiegPLSWM16,
  author       = {Pier Luigi Buttigieg and
                  Evangelos Pafilis and
                  Suzanna E. Lewis and
                  Mark P. Schildhauer and
                  Ramona L. Walls and
                  Christopher J. Mungall},
  title        = {The environment ontology in 2016: bridging domains with increased
                  scope, semantic density, and interoperation},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {57},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0097-6},
  doi          = {10.1186/S13326-016-0097-6},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/ButtigiegPLSWM16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/CasteleiroKS16,
  author       = {Mercedes Arg{\"{u}}ello Casteleiro and
                  Julie Klein and
                  Robert Stevens},
  title        = {The Proteasix Ontology},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {33},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0078-9},
  doi          = {10.1186/S13326-016-0078-9},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/CasteleiroKS16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/CheungKRSRSAGGA16,
  author       = {Kei{-}Hoi Cheung and
                  Shivakumar Keerthikumar and
                  Paola Roncaglia and
                  Sai Lakshmi Subramanian and
                  Matthew E. Roth and
                  Monisha Samuel and
                  Sushma Anand and
                  Lahiru Gangoda and
                  Stephen Gould and
                  Roger Alexander and
                  David Galas and
                  Mark B. Gerstein and
                  Andrew F. Hill and
                  Robert R. Kitchen and
                  Jan L{\"{o}}tvall and
                  Tushar Patel},
  title        = {Extending gene ontology in the context of extracellular {RNA} and
                  vesicle communication},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {19},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0061-5},
  doi          = {10.1186/S13326-016-0061-5},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/CheungKRSRSAGGA16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/ConwayKFSCMCJ16,
  author       = {Mike Conway and
                  Artem Khojoyan and
                  Fariba Fana and
                  William Scuba and
                  Melissa Castine and
                  Danielle L. Mowery and
                  Wendy W. Chapman and
                  Simon Jupp},
  title        = {Developing a web-based {SKOS} editor},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {5},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-015-0043-z},
  doi          = {10.1186/S13326-015-0043-Z},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/biomedsem/ConwayKFSCMCJ16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/DhombresB16,
  author       = {Ferdinand Dhombres and
                  Olivier Bodenreider},
  title        = {Interoperability between phenotypes in research and healthcare terminologies
                  - Investigating partial mappings between {HPO} and {SNOMED} {CT}},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {3},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0047-3},
  doi          = {10.1186/S13326-016-0047-3},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/DhombresB16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/DiehlMBBDDHORSS16,
  author       = {Alexander D. Diehl and
                  Terrence F. Meehan and
                  Yvonne M. Bradford and
                  Matthew H. Brush and
                  Wasila M. Dahdul and
                  David S. Dougall and
                  Yongqun He and
                  David Osumi{-}Sutherland and
                  Alan Ruttenberg and
                  Sirarat Sarntivijai and
                  Ceri E. Van Slyke and
                  Nicole A. Vasilevsky and
                  Melissa A. Haendel and
                  Judith A. Blake and
                  Christopher J. Mungall},
  title        = {The Cell Ontology 2016: enhanced content, modularization, and ontology
                  interoperability},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {44},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0088-7},
  doi          = {10.1186/S13326-016-0088-7},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/biomedsem/DiehlMBBDDHORSS16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/DrameMD16,
  author       = {Khadim Dram{\'{e}} and
                  Fleur Mougin and
                  Gayo Diallo},
  title        = {Large scale biomedical texts classification: a kNN and an ESA-based
                  approaches},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {40},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0073-1},
  doi          = {10.1186/S13326-016-0073-1},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/DrameMD16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/DuCCT16,
  author       = {Jingcheng Du and
                  Yi Cai and
                  Yong Chen and
                  Cui Tao},
  title        = {Trivalent influenza vaccine adverse symptoms analysis based on MedDRA
                  terminology using {VAERS} data in 2011},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {13},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0056-2},
  doi          = {10.1186/S13326-016-0056-2},
  timestamp    = {Wed, 09 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/DuCCT16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/Duque-RamosQIFS16,
  author       = {Astrid Duque{-}Ramos and
                  Manuel Quesada{-}Mart{\'{\i}}nez and
                  Miguela Iniesta{-}Moreno and
                  Jesualdo Tom{\'{a}}s Fern{\'{a}}ndez{-}Breis and
                  Robert Stevens},
  title        = {Supporting the analysis of ontology evolution processes through the
                  combination of static and dynamic scaling functions in OQuaRE},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {63},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0091-z},
  doi          = {10.1186/S13326-016-0091-Z},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/Duque-RamosQIFS16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/Fernandez-Breis16,
  author       = {Jesualdo Tom{\'{a}}s Fern{\'{a}}ndez{-}Breis and
                  Hirokazu Chiba and
                  Mar{\'{\i}}a Del Carmen Legaz{-}Garc{\'{\i}}a and
                  Ikuo Uchiyama},
  title        = {The Orthology Ontology: development and applications},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {34},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0077-x},
  doi          = {10.1186/S13326-016-0077-X},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/Fernandez-Breis16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/FisherHBDKGSS16,
  author       = {Hannah M. Fisher and
                  Robert Hoehndorf and
                  Bruno S. Bazelato and
                  Soheil S. Dadras and
                  Lloyd E. King and
                  Georgios V. Gkoutos and
                  John P. Sundberg and
                  Paul N. Schofield},
  title        = {DermO; an ontology for the description of dermatologic disease},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {38},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0085-x},
  doi          = {10.1186/S13326-016-0085-X},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/FisherHBDKGSS16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/FunkCHV16,
  author       = {Christopher S. Funk and
                  K. Bretonnel Cohen and
                  Lawrence E. Hunter and
                  Karin M. Verspoor},
  title        = {Gene Ontology synonym generation rules lead to increased performance
                  in biomedical concept recognition},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {52},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0096-7},
  doi          = {10.1186/S13326-016-0096-7},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/biomedsem/FunkCHV16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/GarciaGM16,
  author       = {Mar{\'{\i}}a del Mar Rold{\'{a}}n Garc{\'{\i}}a and
                  Mar{\'{\i}}a Jes{\'{u}}s Garc{\'{\i}}a{-}Godoy and
                  Jos{\'{e}} Francisco Aldana Montes},
  title        = {Dione: An {OWL} representation of {ICD-10-CM} for classifying patients'
                  diseases},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {62},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0105-x},
  doi          = {10.1186/S13326-016-0105-X},
  timestamp    = {Tue, 29 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/biomedsem/GarciaGM16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/GuoRHLXZRJZH16,
  author       = {Abra Guo and
                  Rebecca Racz and
                  Junguk Hur and
                  Yu Lin and
                  Zuoshuang Xiang and
                  Lili Zhao and
                  Jordan Rinder and
                  Guoqian Jiang and
                  Qian Zhu and
                  Yongqun He},
  title        = {Ontology-based collection, representation and analysis of drug-associated
                  neuropathy adverse events},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {29},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0069-x},
  doi          = {10.1186/S13326-016-0069-X},
  timestamp    = {Mon, 21 Feb 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/biomedsem/GuoRHLXZRJZH16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/GuptaRTWSV16,
  author       = {Samir Gupta and
                  Karen E. Ross and
                  Catalina O. Tudor and
                  Cathy H. Wu and
                  Carl J. Schmidt and
                  K. Vijay{-}Shanker},
  title        = {miRiaD: {A} Text Mining Tool for Detecting Associations of microRNAs
                  with Diseases},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {9},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-015-0044-y},
  doi          = {10.1186/S13326-015-0044-Y},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/GuptaRTWSV16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/HanKK16,
  author       = {Xu Han and
                  Jung{-}Jae Kim and
                  Chee Keong Kwoh},
  title        = {Active learning for ontological event extraction incorporating named
                  entity recognition and unknown word handling},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {22},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0059-z},
  doi          = {10.1186/S13326-016-0059-Z},
  timestamp    = {Fri, 01 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/biomedsem/HanKK16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/HannaBH16,
  author       = {Josh Hanna and
                  Jiang Bian and
                  William R. Hogan},
  title        = {An accurate and precise representation of drug ingredients},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {7},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0048-2},
  doi          = {10.1186/S13326-016-0048-2},
  timestamp    = {Sun, 25 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/HannaBH16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/HicksHWBH16,
  author       = {Amanda Hicks and
                  Josh Hanna and
                  Daniel Welch and
                  Mathias Brochhausen and
                  William R. Hogan},
  title        = {The ontology of medically related social entities: recent developments},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {47},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0087-8},
  doi          = {10.1186/S13326-016-0087-8},
  timestamp    = {Sun, 25 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/HicksHWBH16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/HoehndorfAGGGHK16,
  author       = {Robert Hoehndorf and
                  Mona Alshahrani and
                  Georgios V. Gkoutos and
                  George Gosline and
                  Quentin Groom and
                  Thomas Hamann and
                  Jens Kattge and
                  Sylvia Mota de Oliveira and
                  Marco Schmidt and
                  Soraya Sierra and
                  Erik Smets and
                  Rutger A. Vos and
                  Claus Weiland},
  title        = {The flora phenotype ontology {(FLOPO):} tool for integrating morphological
                  traits and phenotypes of vascular plants},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {65:1--65:11},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0107-8},
  doi          = {10.1186/S13326-016-0107-8},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/HoehndorfAGGGHK16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/HoganC16,
  author       = {William R. Hogan and
                  Werner Ceusters},
  title        = {Diagnosis, misdiagnosis, lucky guess, hearsay, and more: an ontological
                  analysis},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {54},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0098-5},
  doi          = {10.1186/S13326-016-0098-5},
  timestamp    = {Sun, 25 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/HoganC16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/HoganWBLBMDH16,
  author       = {William R. Hogan and
                  Michael M. Wagner and
                  Mathias Brochhausen and
                  John Levander and
                  Shawn T. Brown and
                  Nicholas Millett and
                  Jay DePasse and
                  Josh Hanna},
  title        = {The Apollo Structured Vocabulary: an {OWL2} ontology of phenomena
                  in infectious disease epidemiology and population biology for use
                  in epidemic simulation},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {50},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0092-y},
  doi          = {10.1186/S13326-016-0092-Y},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/HoganWBLBMDH16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/HuangESBDHNRHZJ16,
  author       = {Jingshan Huang and
                  Karen Eilbeck and
                  Barry Smith and
                  Judith A. Blake and
                  Dejing Dou and
                  Weili Huang and
                  Darren A. Natale and
                  Alan Ruttenberg and
                  Jun Huan and
                  Michael T. Zimmermann and
                  Guoqian Jiang and
                  Yu Lin and
                  Bin Wu and
                  Harrison J. Strachan and
                  Yongqun He and
                  Shaojie Zhang and
                  Xiaowei Wang and
                  Zixing Liu and
                  Glen M. Borchert and
                  Ming Tan},
  title        = {The Non-Coding {RNA} Ontology {(NCRO):} a comprehensive resource for
                  the unification of non-coding {RNA} biology},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {24},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0066-0},
  doi          = {10.1186/S13326-016-0066-0},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/HuangESBDHNRHZJ16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/HuangGSDHSBENLW16,
  author       = {Jingshan Huang and
                  Fernando Gutierrez and
                  Harrison J. Strachan and
                  Dejing Dou and
                  Weili Huang and
                  Barry Smith and
                  Judith A. Blake and
                  Karen Eilbeck and
                  Darren A. Natale and
                  Yu Lin and
                  Bin Wu and
                  Nisansa de Silva and
                  Xiaowei Wang and
                  Zixing Liu and
                  Glen M. Borchert and
                  Ming Tan and
                  Alan Ruttenberg},
  title        = {OmniSearch: a semantic search system based on the Ontology for MIcroRNA
                  Target {(OMIT)} for microRNA-target gene interaction data},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {25},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0064-2},
  doi          = {10.1186/S13326-016-0064-2},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/HuangGSDHSBENLW16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/IyappanKRHS16,
  author       = {Anandhi Iyappan and
                  Shweta Bagewadi Kawalia and
                  Tamara Raschka and
                  Martin Hofmann{-}Apitius and
                  Philipp Senger},
  title        = {NeuroRDF: semantic integration of highly curated data to prioritize
                  biomarker candidates in Alzheimer's disease},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {45},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0079-8},
  doi          = {10.1186/S13326-016-0079-8},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/IyappanKRHS16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/JiangEESC16,
  author       = {Guoqian Jiang and
                  Julie Evans and
                  Cory M. Endle and
                  Harold R. Solbrig and
                  Christopher G. Chute},
  title        = {Using Semantic Web technologies for the generation of domain-specific
                  templates to support clinical study metadata standards},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {10},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0053-5},
  doi          = {10.1186/S13326-016-0053-5},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/JiangEESC16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/JuppBWSPM16,
  author       = {Simon Jupp and
                  Tony Burdett and
                  Danielle Welter and
                  Sirarat Sarntivijai and
                  Helen E. Parkinson and
                  James Malone},
  title        = {Webulous and the Webulous Google Add-On - a web service and application
                  for ontology building from templates},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {17},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0055-3},
  doi          = {10.1186/S13326-016-0055-3},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/JuppBWSPM16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/JuppMBHWEPR16,
  author       = {Simon Jupp and
                  James Malone and
                  Tony Burdett and
                  Jean{-}Karim H{\'{e}}rich{\'{e}} and
                  Eleanor Williams and
                  Jan Ellenberg and
                  Helen E. Parkinson and
                  Gabriella Rustici},
  title        = {The cellular microscopy phenotype ontology},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {28},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0074-0},
  doi          = {10.1186/S13326-016-0074-0},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/JuppMBHWEPR16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/Legaz-GarciaMTF16,
  author       = {Mar{\'{\i}}a Del Carmen Legaz{-}Garc{\'{\i}}a and
                  Jos{\'{e}} Antonio Mi{\~{n}}arro{-}Gim{\'{e}}nez and
                  Marcos Men{\'{a}}rguez Tortosa and
                  Jesualdo Tom{\'{a}}s Fern{\'{a}}ndez{-}Breis},
  title        = {Generation of open biomedical datasets through ontology-driven transformation
                  and integration processes},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {32},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0075-z},
  doi          = {10.1186/S13326-016-0075-Z},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/Legaz-GarciaMTF16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/LeungD16,
  author       = {Tiffany I. Leung and
                  Michel Dumontier},
  title        = {Overlap in drug-disease associations between clinical practice guidelines
                  and drug structured product label indications},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {37},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0081-1},
  doi          = {10.1186/S13326-016-0081-1},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/LeungD16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/LinZH16,
  author       = {Yu Lin and
                  Jie Zheng and
                  Yongqun He},
  title        = {{VICO:} Ontology-based representation and integrative analysis of
                  Vaccination Informed Consent forms},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {20},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0062-4},
  doi          = {10.1186/S13326-016-0062-4},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/LinZH16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/Lopez-GarciaS16,
  author       = {Pablo L{\'{o}}pez{-}Garc{\'{\i}}a and
                  Stefan Schulz},
  title        = {Can {SNOMED} {CT} be squeezed without losing its shape?},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {56},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0101-1},
  doi          = {10.1186/S13326-016-0101-1},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/Lopez-GarciaS16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/MehryaryKHG16,
  author       = {Farrokh Mehryary and
                  Suwisa Kaewphan and
                  Kai Hakala and
                  Filip Ginter},
  title        = {Filtering large-scale event collections using a combination of supervised
                  and unsupervised learning for event trigger classification},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {27},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0070-4},
  doi          = {10.1186/S13326-016-0070-4},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/MehryaryKHG16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/MoweryCCSMKC16,
  author       = {Danielle L. Mowery and
                  Brian E. Chapman and
                  Mike Conway and
                  Brett R. South and
                  Erin Madden and
                  Salomeh Keyhani and
                  Wendy W. Chapman},
  title        = {Extracting a stroke phenotype risk factor from Veteran Health Administration
                  clinical reports: an information content analysis},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {26},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0065-1},
  doi          = {10.1186/S13326-016-0065-1},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/biomedsem/MoweryCCSMKC16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/MowerySCLPSSMVE16,
  author       = {Danielle L. Mowery and
                  Brett R. South and
                  Lee M. Christensen and
                  Jianwei Leng and
                  Laura{-}Maria Peltonen and
                  Sanna Salanter{\"{a}} and
                  Hanna Suominen and
                  David Mart{\'{\i}}nez and
                  Sumithra Velupillai and
                  No{\'{e}}mie Elhadad and
                  Guergana Savova and
                  Sameer Pradhan and
                  Wendy W. Chapman},
  title        = {Normalizing acronyms and abbreviations to aid patient understanding
                  of clinical texts: ShARe/CLEF eHealth Challenge 2013, Task 2},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {43},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0084-y},
  doi          = {10.1186/S13326-016-0084-Y},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/biomedsem/MowerySCLPSSMVE16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/Mutowo-Meullenet16,
  author       = {Prudence Mutowo{-}Meullenet and
                  A. Patr{\'{\i}}cia Bento and
                  Nathan Dedman and
                  Anna Gaulton and
                  Anne Hersey and
                  Jane Lomax and
                  John P. Overington},
  title        = {A drug target slim: using gene ontology and gene ontology annotations
                  to navigate protein-ligand target space in ChEMBL},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {59},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0102-0},
  doi          = {10.1186/S13326-016-0102-0},
  timestamp    = {Sat, 09 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/Mutowo-Meullenet16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/OellrichMPSWK16,
  author       = {Anika Oellrich and
                  Terrence F. Meehan and
                  Helen E. Parkinson and
                  Sirarat Sarntivijai and
                  Jacqueline K. White and
                  Natasha A. Karp},
  title        = {Reporting phenotypes in mouse models when considering body size as
                  a potential confounder},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {2},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0050-8},
  doi          = {10.1186/S13326-016-0050-8},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/OellrichMPSWK16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/PozzaBOCM16,
  author       = {Giandomenico Pozza and
                  Stefano Borgo and
                  Alessandro Oltramari and
                  Laura Contalbrigo and
                  Stefano Marangon},
  title        = {Information and organization in public health institutes: an ontology-based
                  modeling of the entities in the reception-analysis-report phases},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {51},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0095-8},
  doi          = {10.1186/S13326-016-0095-8},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/PozzaBOCM16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/RayCJADD16,
  author       = {Patrick L. Ray and
                  Alexander P. Cox and
                  Mark Jensen and
                  Travis Allen and
                  William D. Duncan and
                  Alexander D. Diehl},
  title        = {Representing vision and blindness},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {15},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0058-0},
  doi          = {10.1186/S13326-016-0058-0},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/RayCJADD16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/ReadDNRSW16,
  author       = {Warren J. Read and
                  George Demetriou and
                  Goran Nenadic and
                  Noel Ruddock and
                  Robert Stevens and
                  Jerry Winter},
  title        = {The BioHub Knowledge Base: Ontology and Repository for Sustainable
                  Biosourcing},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {30},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0071-3},
  doi          = {10.1186/S13326-016-0071-3},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/biomedsem/ReadDNRSW16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/RybinskiM16,
  author       = {Maciej Rybinski and
                  Jos{\'{e}} Francisco Aldana Montes},
  title        = {tESA: a distributional measure for calculating semantic relatedness},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {67:1--67:14},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0109-6},
  doi          = {10.1186/S13326-016-0109-6},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/RybinskiM16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/SarntivijaiVJSB16,
  author       = {Sirarat Sarntivijai and
                  Drashtti Vasant and
                  Simon Jupp and
                  Gary Saunders and
                  A. Patr{\'{\i}}cia Bento and
                  Daniel Gonzalez and
                  Joanna Betts and
                  Samiul Hasan and
                  Gautier Koscielny and
                  Ian Dunham and
                  Helen E. Parkinson and
                  James Malone},
  title        = {Linking rare and common disease: mapping clinical disease-phenotypes
                  to ontologies in therapeutic target validation},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {8},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0051-7},
  doi          = {10.1186/S13326-016-0051-7},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/SarntivijaiVJSB16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/ScharmWMW16,
  author       = {Martin Scharm and
                  Dagmar Waltemath and
                  Pedro Mendes and
                  Olaf Wolkenhauer},
  title        = {{COMODI:} an ontology to characterise differences in versions of computational
                  models in biology},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {46},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0080-2},
  doi          = {10.1186/S13326-016-0080-2},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/ScharmWMW16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/ScubaTMTLDC16,
  author       = {William Scuba and
                  Melissa Tharp and
                  Danielle L. Mowery and
                  Eugene Tseytlin and
                  Yang Liu and
                  Frank A. Drews and
                  Wendy W. Chapman},
  title        = {Knowledge Author: facilitating user-driven, domain content development
                  to support clinical information extraction},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {42},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0086-9},
  doi          = {10.1186/S13326-016-0086-9},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/biomedsem/ScubaTMTLDC16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/SlaterGSH16,
  author       = {Luke T. Slater and
                  Georgios V. Gkoutos and
                  Paul N. Schofield and
                  Robert Hoehndorf},
  title        = {Using AberOWL for fast and scalable reasoning over BioPortal ontologies},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {49},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0090-0},
  doi          = {10.1186/S13326-016-0090-0},
  timestamp    = {Mon, 03 Jan 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/biomedsem/SlaterGSH16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/SojicTCS16,
  author       = {Aleksandra Sojic and
                  Walter Terkaj and
                  Giorgia Contini and
                  Marco Sacco},
  title        = {Modularising ontology and designing inference patterns to personalise
                  health condition assessment: the case of obesity},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {12},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0049-1},
  doi          = {10.1186/S13326-016-0049-1},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/biomedsem/SojicTCS16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/TaoHA16,
  author       = {Cui Tao and
                  Yongqun He and
                  Sivaram Arabandi},
  title        = {Vaccine and Drug Ontology Studies {(VDOS} 2014)},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {6},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-015-0039-8},
  doi          = {10.1186/S13326-015-0039-8},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/TaoHA16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/ThapenSH16,
  author       = {Nicholas A. Thapen and
                  Donal Stephen Simmie and
                  Chris Hankin},
  title        = {The early bird catches the term: combining twitter and news data for
                  event detection and situational awareness},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {61},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0103-z},
  doi          = {10.1186/S13326-016-0103-Z},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/ThapenSH16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/VerspoorOCGRSDS16,
  author       = {Karin Verspoor and
                  Anika Oellrich and
                  Nigel Collier and
                  Tudor Groza and
                  Philippe Rocca{-}Serra and
                  Larisa N. Soldatova and
                  Michel Dumontier and
                  Nigam Shah},
  title        = {Thematic issue of the Second combined Bio-ontologies and Phenotypes
                  Workshop},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {66:1--66:4},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0108-7},
  doi          = {10.1186/S13326-016-0108-7},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/VerspoorOCGRSDS16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/VitaOSSKTEHBSP16,
  author       = {Randi Vita and
                  James A. Overton and
                  Emily Seymour and
                  John Sidney and
                  Jim Kaufman and
                  Rebecca L. Tallmadge and
                  Shirley Ellis and
                  John Hammond and
                  Geoff W. Butcher and
                  Alessandro Sette and
                  Bjoern Peters},
  title        = {An ontology for major histocompatibility restriction},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {1},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0045-5},
  doi          = {10.1186/S13326-016-0045-5},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/VitaOSSKTEHBSP16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/YokochiKUKIILMN16,
  author       = {Masashi Yokochi and
                  Naohiro Kobayashi and
                  Eldon L. Ulrich and
                  Akira R. Kinjo and
                  Takeshi Iwata and
                  Yannis E. Ioannidis and
                  Miron Livny and
                  John L. Markley and
                  Haruki Nakamura and
                  Chojiro Kojima and
                  Toshimichi Fujiwara},
  title        = {Publication of nuclear magnetic resonance experimental data with semantic
                  web technology and the application thereof to biomedical research
                  of proteins},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {16},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0057-1},
  doi          = {10.1186/S13326-016-0057-1},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/biomedsem/YokochiKUKIILMN16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/ZhangWDXWTLX16,
  author       = {Yaoyun Zhang and
                  Heng{-}Yi Wu and
                  Jingcheng Du and
                  Jun Xu and
                  Jingqi Wang and
                  Cui Tao and
                  Lang Li and
                  Hua Xu},
  title        = {Extracting drug-enzyme relation from literature as evidence for drug
                  drug interaction},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {11},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0052-6},
  doi          = {10.1186/S13326-016-0052-6},
  timestamp    = {Sat, 09 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/ZhangWDXWTLX16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/ZhangWDXWTLX16a,
  author       = {Yaoyun Zhang and
                  Heng{-}Yi Wu and
                  Jingcheng Du and
                  Jun Xu and
                  Jingqi Wang and
                  Cui Tao and
                  Lang Li and
                  Hua Xu},
  title        = {Erratum to: Extracting drug-enzyme relation from literature as evidence
                  for drug drug interaction},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {21},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0063-3},
  doi          = {10.1186/S13326-016-0063-3},
  timestamp    = {Sat, 09 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/ZhangWDXWTLX16a.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/ZhengHMLHSH16,
  author       = {Jie Zheng and
                  Marcelline R. Harris and
                  Anna Maria Masci and
                  Yu Lin and
                  Alfred O. Hero III and
                  Barry Smith and
                  Yongqun He},
  title        = {The Ontology of Biological and Clinical Statistics {(OBCS)} for standardized
                  and reproducible statistical analysis},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {53},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0100-2},
  doi          = {10.1186/S13326-016-0100-2},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/ZhengHMLHSH16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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