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@article{DBLP:journals/almob/AllmanBR19,
  author       = {Elizabeth S. Allman and
                  Hector Ba{\~{n}}os and
                  John A. Rhodes},
  title        = {{NANUQ:} a method for inferring species networks from gene trees under
                  the coalescent model},
  journal      = {Algorithms Mol. Biol.},
  volume       = {14},
  number       = {1},
  pages        = {24},
  year         = {2019},
  url          = {https://doi.org/10.1186/s13015-019-0159-2},
  doi          = {10.1186/S13015-019-0159-2},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/almob/AllmanBR19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/AmbroiseDNRV19,
  author       = {Christophe Ambroise and
                  Alia Dehman and
                  Pierre Neuvial and
                  Guillem Rigaill and
                  Nathalie Villa{-}Vialaneix},
  title        = {Adjacency-constrained hierarchical clustering of a band similarity
                  matrix with application to genomics},
  journal      = {Algorithms Mol. Biol.},
  volume       = {14},
  number       = {1},
  pages        = {22:1--22:14},
  year         = {2019},
  url          = {https://doi.org/10.1186/s13015-019-0157-4},
  doi          = {10.1186/S13015-019-0157-4},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/almob/AmbroiseDNRV19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/BoucherGKLMM19,
  author       = {Christina Boucher and
                  Travis Gagie and
                  Alan Kuhnle and
                  Ben Langmead and
                  Giovanni Manzini and
                  Taher Mun},
  title        = {Prefix-free parsing for building big BWTs},
  journal      = {Algorithms Mol. Biol.},
  volume       = {14},
  number       = {1},
  pages        = {13:1--13:15},
  year         = {2019},
  url          = {https://doi.org/10.1186/s13015-019-0148-5},
  doi          = {10.1186/S13015-019-0148-5},
  timestamp    = {Sun, 25 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/almob/BoucherGKLMM19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/ChindelevitchLM19,
  author       = {Leonid Chindelevitch and
                  Sean La and
                  Joao Meidanis},
  title        = {A cubic algorithm for the generalized rank median of three genomes},
  journal      = {Algorithms Mol. Biol.},
  volume       = {14},
  number       = {1},
  pages        = {16:1--16:16},
  year         = {2019},
  url          = {https://doi.org/10.1186/s13015-019-0150-y},
  doi          = {10.1186/S13015-019-0150-Y},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/almob/ChindelevitchLM19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/DondiLS19,
  author       = {Riccardo Dondi and
                  Manuel Lafond and
                  C{\'{e}}line Scornavacca},
  title        = {Reconciling multiple genes trees via segmental duplications and losses},
  journal      = {Algorithms Mol. Biol.},
  volume       = {14},
  number       = {1},
  pages        = {7:1--7:19},
  year         = {2019},
  url          = {https://doi.org/10.1186/s13015-019-0139-6},
  doi          = {10.1186/S13015-019-0139-6},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/DondiLS19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/EgidiLMT19,
  author       = {Lavinia Egidi and
                  Felipe A. Louza and
                  Giovanni Manzini and
                  Guilherme P. Telles},
  title        = {External memory {BWT} and {LCP} computation for sequence collections
                  with applications},
  journal      = {Algorithms Mol. Biol.},
  volume       = {14},
  number       = {1},
  pages        = {6:1--6:15},
  year         = {2019},
  url          = {https://doi.org/10.1186/s13015-019-0140-0},
  doi          = {10.1186/S13015-019-0140-0},
  timestamp    = {Fri, 10 Jul 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/almob/EgidiLMT19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/EnglerCVGMK19,
  author       = {Martin S. Engler and
                  Bertrand Caron and
                  Lourens E. Veen and
                  Daan P. Geerke and
                  Alan E. Mark and
                  Gunnar W. Klau},
  title        = {Automated partial atomic charge assignment for drug-like molecules:
                  a fast knapsack approach},
  journal      = {Algorithms Mol. Biol.},
  volume       = {14},
  number       = {1},
  pages        = {1:1--1:10},
  year         = {2019},
  url          = {https://doi.org/10.1186/s13015-019-0138-7},
  doi          = {10.1186/S13015-019-0138-7},
  timestamp    = {Sun, 24 Jul 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/almob/EnglerCVGMK19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/HajkarimUV19,
  author       = {Morteza Chalabi Hajkarim and
                  Eli Upfal and
                  Fabio Vandin},
  title        = {Differentially mutated subnetworks discovery},
  journal      = {Algorithms Mol. Biol.},
  volume       = {14},
  number       = {1},
  pages        = {10:1--10:11},
  year         = {2019},
  url          = {https://doi.org/10.1186/s13015-019-0146-7},
  doi          = {10.1186/S13015-019-0146-7},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/HajkarimUV19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/KarpovMRS19,
  author       = {Nikolai Karpov and
                  Salem Malikic and
                  Md. Khaledur Rahman and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {A multi-labeled tree dissimilarity measure for comparing "clonal trees"
                  of tumor progression},
  journal      = {Algorithms Mol. Biol.},
  volume       = {14},
  number       = {1},
  pages        = {17:1--17:18},
  year         = {2019},
  url          = {https://doi.org/10.1186/s13015-019-0152-9},
  doi          = {10.1186/S13015-019-0152-9},
  timestamp    = {Mon, 03 Jan 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/KarpovMRS19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/KiryuIK19,
  author       = {Hisanori Kiryu and
                  Yuto Ichikawa and
                  Yasuhiro Kojima},
  title        = {{TMRS:} an algorithm for computing the time to the most recent substitution
                  event from a multiple alignment column},
  journal      = {Algorithms Mol. Biol.},
  volume       = {14},
  number       = {1},
  pages        = {23:1--23:14},
  year         = {2019},
  url          = {https://doi.org/10.1186/s13015-019-0158-3},
  doi          = {10.1186/S13015-019-0158-3},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/almob/KiryuIK19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/LemosLM19,
  author       = {Alexandre Lemos and
                  In{\^{e}}s Lynce and
                  Pedro T. Monteiro},
  title        = {Repairing Boolean logical models from time-series data using Answer
                  Set Programming},
  journal      = {Algorithms Mol. Biol.},
  volume       = {14},
  number       = {1},
  pages        = {9:1--9:16},
  year         = {2019},
  url          = {https://doi.org/10.1186/s13015-019-0145-8},
  doi          = {10.1186/S13015-019-0145-8},
  timestamp    = {Thu, 04 Aug 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/almob/LemosLM19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/MolloyW19,
  author       = {Erin K. Molloy and
                  Tandy J. Warnow},
  title        = {Statistically consistent divide-and-conquer pipelines for phylogeny
                  estimation using NJMerge},
  journal      = {Algorithms Mol. Biol.},
  volume       = {14},
  number       = {1},
  pages        = {14:1--14:17},
  year         = {2019},
  url          = {https://doi.org/10.1186/s13015-019-0151-x},
  doi          = {10.1186/S13015-019-0151-X},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/almob/MolloyW19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/MuggliPB19,
  author       = {Martin D. Muggli and
                  Simon J. Puglisi and
                  Christina Boucher},
  title        = {Kohdista: an efficient method to index and query possible Rmap alignments},
  journal      = {Algorithms Mol. Biol.},
  volume       = {14},
  number       = {1},
  pages        = {25},
  year         = {2019},
  url          = {https://doi.org/10.1186/s13015-019-0160-9},
  doi          = {10.1186/S13015-019-0160-9},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/almob/MuggliPB19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/NorriCKM19,
  author       = {Tuukka Norri and
                  Bastien Cazaux and
                  Dmitry Kosolobov and
                  Veli M{\"{a}}kinen},
  title        = {Linear time minimum segmentation enables scalable founder reconstruction},
  journal      = {Algorithms Mol. Biol.},
  volume       = {14},
  number       = {1},
  pages        = {12:1--12:15},
  year         = {2019},
  url          = {https://doi.org/10.1186/s13015-019-0147-6},
  doi          = {10.1186/S13015-019-0147-6},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/NorriCKM19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/OliveiraJFDD19,
  author       = {Andre Rodrigues Oliveira and
                  G{\'{e}}raldine Jean and
                  Guillaume Fertin and
                  Ulisses Dias and
                  Zanoni Dias},
  title        = {Super short operations on both gene order and intergenic sizes},
  journal      = {Algorithms Mol. Biol.},
  volume       = {14},
  number       = {1},
  pages        = {21:1--21:17},
  year         = {2019},
  url          = {https://doi.org/10.1186/s13015-019-0156-5},
  doi          = {10.1186/S13015-019-0156-5},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/almob/OliveiraJFDD19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/PrezzaPSR19,
  author       = {Nicola Prezza and
                  Nadia Pisanti and
                  Marinella Sciortino and
                  Giovanna Rosone},
  title        = {SNPs detection by eBWT positional clustering},
  journal      = {Algorithms Mol. Biol.},
  volume       = {14},
  number       = {1},
  pages        = {3:1--3:13},
  year         = {2019},
  url          = {https://doi.org/10.1186/s13015-019-0137-8},
  doi          = {10.1186/S13015-019-0137-8},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/PrezzaPSR19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/RosenP19,
  author       = {Yohei M. Rosen and
                  Benedict J. Paten},
  title        = {An average-case sublinear forward algorithm for the haploid Li and
                  Stephens model},
  journal      = {Algorithms Mol. Biol.},
  volume       = {14},
  number       = {1},
  pages        = {11:1--11:12},
  year         = {2019},
  url          = {https://doi.org/10.1186/s13015-019-0144-9},
  doi          = {10.1186/S13015-019-0144-9},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/RosenP19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/SeferK19,
  author       = {Emre Sefer and
                  Carl Kingsford},
  title        = {Semi-nonparametric modeling of topological domain formation from epigenetic
                  data},
  journal      = {Algorithms Mol. Biol.},
  volume       = {14},
  number       = {1},
  pages        = {4:1--4:11},
  year         = {2019},
  url          = {https://doi.org/10.1186/s13015-019-0142-y},
  doi          = {10.1186/S13015-019-0142-Y},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/SeferK19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/SimonaitisCS19,
  author       = {Pijus Simonaitis and
                  Annie Chateau and
                  Krister M. Swenson},
  title        = {A general framework for genome rearrangement with biological constraints},
  journal      = {Algorithms Mol. Biol.},
  volume       = {14},
  number       = {1},
  pages        = {15:1--15:14},
  year         = {2019},
  url          = {https://doi.org/10.1186/s13015-019-0149-4},
  doi          = {10.1186/S13015-019-0149-4},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/almob/SimonaitisCS19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/WalveRS19,
  author       = {Riku Walve and
                  Pasi Rastas and
                  Leena Salmela},
  title        = {Kermit: linkage map guided long read assembly},
  journal      = {Algorithms Mol. Biol.},
  volume       = {14},
  number       = {1},
  pages        = {8:1--8:10},
  year         = {2019},
  url          = {https://doi.org/10.1186/s13015-019-0143-x},
  doi          = {10.1186/S13015-019-0143-X},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/WalveRS19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/WiedenhoeftCKGS19,
  author       = {John Wiedenhoeft and
                  Alex Cagan and
                  Rimma Kozhemyakina and
                  Rimma Gulevich and
                  Alexander Schliep},
  title        = {Bayesian localization of {CNV} candidates in {WGS} data within minutes},
  journal      = {Algorithms Mol. Biol.},
  volume       = {14},
  number       = {1},
  pages        = {20:1--20:16},
  year         = {2019},
  url          = {https://doi.org/10.1186/s13015-019-0154-7},
  doi          = {10.1186/S13015-019-0154-7},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/almob/WiedenhoeftCKGS19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/WuKWY19,
  author       = {Jimmy Wu and
                  Alex Khodaverdian and
                  Benjamin Weitz and
                  Nir Yosef},
  title        = {Connectivity problems on heterogeneous graphs},
  journal      = {Algorithms Mol. Biol.},
  volume       = {14},
  number       = {1},
  pages        = {5:1--5:17},
  year         = {2019},
  url          = {https://doi.org/10.1186/s13015-019-0141-z},
  doi          = {10.1186/S13015-019-0141-Z},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/WuKWY19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/ZhangRW19,
  author       = {Qiuyi Zhang and
                  Satish Rao and
                  Tandy J. Warnow},
  title        = {Constrained incremental tree building: new absolute fast converging
                  phylogeny estimation methods with improved scalability and accuracy},
  journal      = {Algorithms Mol. Biol.},
  volume       = {14},
  number       = {1},
  pages        = {2:1--2:12},
  year         = {2019},
  url          = {https://doi.org/10.1186/s13015-019-0136-9},
  doi          = {10.1186/S13015-019-0136-9},
  timestamp    = {Fri, 29 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/almob/ZhangRW19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/ZhangZS19,
  author       = {Yue Zhang and
                  Chunfang Zheng and
                  David Sankoff},
  title        = {A branching process for homology distribution-based inference of polyploidy,
                  speciation and loss},
  journal      = {Algorithms Mol. Biol.},
  volume       = {14},
  number       = {1},
  pages        = {18:1--18:13},
  year         = {2019},
  url          = {https://doi.org/10.1186/s13015-019-0153-8},
  doi          = {10.1186/S13015-019-0153-8},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/almob/ZhangZS19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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