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@inproceedings{DBLP:conf/recomb/AmirZ11,
  author       = {Amnon Amir and
                  Or Zuk},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Bacterial Community Reconstruction Using Compressed Sensing},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {1--15},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_1},
  doi          = {10.1007/978-3-642-20036-6\_1},
  timestamp    = {Mon, 13 May 2019 09:30:09 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/AmirZ11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BhatiaKUCTCLYB11,
  author       = {Swapnil Bhatia and
                  Yong J. Kil and
                  Beatrix Ueberheide and
                  Brian T. Chait and
                  Lemmuel Lara Tayo and
                  Lourdes J. Cruz and
                  Bingwen Lu and
                  John R. Yates III and
                  Marshall W. Bern},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Constrained De Novo Sequencing of Peptides with Application to Conotoxins},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {16--30},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_2},
  doi          = {10.1007/978-3-642-20036-6\_2},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/BhatiaKUCTCLYB11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChindelevitchRB11,
  author       = {Leonid Chindelevitch and
                  Aviv Regev and
                  Bonnie Berger},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Metabolic Network Analysis Demystified},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {31--33},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_3},
  doi          = {10.1007/978-3-642-20036-6\_3},
  timestamp    = {Tue, 29 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/recomb/ChindelevitchRB11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChindelevitchZERSBH11,
  author       = {Leonid Chindelevitch and
                  Daniel Ziemek and
                  Ahmed Enayetallah and
                  Ranjit Randhawa and
                  Ben Sidders and
                  Christoph Brockel and
                  Enoch S. Huang},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Causal Reasoning on Biological Networks: Interpreting Transcriptional
                  Changes - (Extended Abstract)},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {34--37},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_4},
  doi          = {10.1007/978-3-642-20036-6\_4},
  timestamp    = {Tue, 29 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/recomb/ChindelevitchZERSBH11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DonmezB11,
  author       = {Nilgun Donmez and
                  Michael Brudno},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Hapsembler: An Assembler for Highly Polymorphic Genomes},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {38--52},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_5},
  doi          = {10.1007/978-3-642-20036-6\_5},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/DonmezB11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ErnstK11,
  author       = {Jason Ernst and
                  Manolis Kellis},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Discovery and Characterization of Chromatin States for Systematic
                  Annotation of the Human Genome},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {53},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_6},
  doi          = {10.1007/978-3-642-20036-6\_6},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/ErnstK11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ErtenBK11,
  author       = {Sinan Erten and
                  G{\"{u}}rkan Bebek and
                  Mehmet Koyut{\"{u}}rk},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Disease Gene Prioritization Based on Topological Similarity in Protein-Protein
                  Interaction Networks},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {54--68},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_7},
  doi          = {10.1007/978-3-642-20036-6\_7},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/ErtenBK11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GaoNS11,
  author       = {Song Gao and
                  Niranjan Nagarajan and
                  Wing{-}Kin Sung},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Opera: Reconstructing Optimal Genomic Scaffolds with High-Throughput
                  Paired-End Sequences},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {437--451},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_40},
  doi          = {10.1007/978-3-642-20036-6\_40},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/GaoNS11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Gat-ViksMKS11,
  author       = {Irit Gat{-}Viks and
                  Renana Meller and
                  Martin Kupiec and
                  Ron Shamir},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Understanding Gene Sequence Variation in the Context of Transcription
                  Regulation in Yeast},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {69},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_8},
  doi          = {10.1007/978-3-642-20036-6\_8},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/Gat-ViksMKS11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HeathBK11,
  author       = {Allison P. Heath and
                  George N. Bennett and
                  Lydia E. Kavraki},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Identifying Branched Metabolic Pathways by Merging Linear Metabolic
                  Pathways},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {70--84},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_9},
  doi          = {10.1007/978-3-642-20036-6\_9},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/HeathBK11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HickeyB11,
  author       = {Glenn Hickey and
                  Mathieu Blanchette},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {A Probabilistic Model for Sequence Alignment with Context-Sensitive
                  Indels},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {85--103},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_10},
  doi          = {10.1007/978-3-642-20036-6\_10},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/HickeyB11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HormozdiariHMES11,
  author       = {Fereydoun Hormozdiari and
                  Iman Hajirasouliha and
                  Andrew W. McPherson and
                  Evan E. Eichler and
                  S{\"{u}}leyman Cenk Sahinalp},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Simultaneous Structural Variation Discovery in Multiple Paired-End
                  Sequenced Genomes},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {104--105},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_11},
  doi          = {10.1007/978-3-642-20036-6\_11},
  timestamp    = {Thu, 10 Oct 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/HormozdiariHMES11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HuangJ11,
  author       = {Jim C. Huang and
                  Nebojsa Jojic},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Variable Selection through Correlation Sifting},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {106--123},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_12},
  doi          = {10.1007/978-3-642-20036-6\_12},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/HuangJ11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/JiangA11,
  author       = {Shuai Jiang and
                  Max A. Alekseyev},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Weighted Genomic Distance Can Hardly Impose a Bound on the Proportion
                  of Transpositions},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {124--133},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_13},
  doi          = {10.1007/978-3-642-20036-6\_13},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/JiangA11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KimM11,
  author       = {Jaebum Kim and
                  Jian Ma},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {{PSAR:} Measuring Multiple Sequence Alignment Reliability by Probabilistic
                  Sampling - (Extended Abstract)},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {134--135},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_14},
  doi          = {10.1007/978-3-642-20036-6\_14},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/KimM11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KirkpatrickLKH11,
  author       = {Bonnie Kirkpatrick and
                  Shuai Cheng Li and
                  Richard M. Karp and
                  Eran Halperin},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Pedigree Reconstruction Using Identity by Descent},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {136--152},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_15},
  doi          = {10.1007/978-3-642-20036-6\_15},
  timestamp    = {Mon, 03 Jan 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/recomb/KirkpatrickLKH11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KuttyKrishnanSLJB11,
  author       = {Sooraj KuttyKrishnan and
                  Jeffrey Sabina and
                  Laura Langton and
                  Mark Johnston and
                  Michael R. Brent},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {A Quantitative Model of Glucose Signaling in Yeast Reveals an Incoherent
                  Feed Forward Loop Leading to a Specific, Transient Pulse of Transcription},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {153},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_16},
  doi          = {10.1007/978-3-642-20036-6\_16},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/KuttyKrishnanSLJB11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LeisersonTCH11,
  author       = {Mark D. M. Leiserson and
                  Diana Tatar and
                  Lenore J. Cowen and
                  Benjamin J. Hescott},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Inferring Mechanisms of Compensation from {E-MAP} and {SGA} Data Using
                  Local Search Algorithms for Max Cut},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {154--167},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_17},
  doi          = {10.1007/978-3-642-20036-6\_17},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/LeisersonTCH11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LiFJ11,
  author       = {Wei Li and
                  Jianxing Feng and
                  Tao Jiang},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {IsoLasso: {A} {LASSO} Regression Approach to RNA-Seq Based Transcriptome
                  Assembly - (Extended Abstract)},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {168--188},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_18},
  doi          = {10.1007/978-3-642-20036-6\_18},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/LiFJ11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LiL11,
  author       = {Xin Li and
                  Jing Li},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Haplotype Reconstruction in Large Pedigrees with Many Untyped Individuals},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {189--203},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_19},
  doi          = {10.1007/978-3-642-20036-6\_19},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/LiL11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LinBM11,
  author       = {Tien{-}ho Lin and
                  Ziv Bar{-}Joseph and
                  Robert F. Murphy},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Learning Cellular Sorting Pathways Using Protein Interactions and
                  Sequence Motifs},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {204--221},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_20},
  doi          = {10.1007/978-3-642-20036-6\_20},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/LinBM11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MartinYBZD11,
  author       = {Jeffrey W. Martin and
                  Anthony K. Yan and
                  Chris Bailey{-}Kellogg and
                  Pei Zhou and
                  Bruce Randall Donald},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {A Geometric Arrangement Algorithm for Structure Determination of Symmetric
                  Protein Homo-oligomers from NOEs and RDCs},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {222--237},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_21},
  doi          = {10.1007/978-3-642-20036-6\_21},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/MartinYBZD11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MedvedevPCTP11,
  author       = {Paul Medvedev and
                  Son K. Pham and
                  Mark Chaisson and
                  Glenn Tesler and
                  Pavel A. Pevzner},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Paired de Bruijn Graphs: {A} Novel Approach for Incorporating Mate
                  Pair Information into Genome Assemblers},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {238--251},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_22},
  doi          = {10.1007/978-3-642-20036-6\_22},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/MedvedevPCTP11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MisraBRS11,
  author       = {Navodit Misra and
                  Guy E. Blelloch and
                  R. Ravi and
                  Russell Schwartz},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {An Optimization-Based Sampling Scheme for Phylogenetic Trees},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {252--266},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_23},
  doi          = {10.1007/978-3-642-20036-6\_23},
  timestamp    = {Sun, 02 Jun 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/MisraBRS11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MohimaniLYGFDP11,
  author       = {Hosein Mohimani and
                  Wei{-}Ting Liu and
                  Yu{-}Liang Yang and
                  Susana P. Gaud{\^{e}}ncio and
                  William Fenical and
                  Pieter C. Dorrestein and
                  Pavel A. Pevzner},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Multiplex De Novo Sequencing of Peptide Antibiotics},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {267--281},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_24},
  doi          = {10.1007/978-3-642-20036-6\_24},
  timestamp    = {Sun, 25 Oct 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/MohimaniLYGFDP11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Nadeau11,
  author       = {Joe Nadeau},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Fractal and Transgenerational Genetic Effects on Phenotypic Variation
                  and Disease Risk},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {282},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_25},
  doi          = {10.1007/978-3-642-20036-6\_25},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/Nadeau11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/NewkirkBCYX11,
  author       = {Daniel Newkirk and
                  Jacob Biesinger and
                  Alvin Chon and
                  Kyoko Yokomori and
                  Xiaohui Xie},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {{AREM:} Aligning Short Reads from ChIP-Sequencing by Expectation Maximization},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {283--297},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_26},
  doi          = {10.1007/978-3-642-20036-6\_26},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/NewkirkBCYX11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/NgAP11,
  author       = {Julio Ng and
                  Amihood Amir and
                  Pavel A. Pevzner},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Blocked Pattern Matching Problem and Its Applications in Proteomics},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {298--319},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_27},
  doi          = {10.1007/978-3-642-20036-6\_27},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/NgAP11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/NobleDASMKLSFB11,
  author       = {William Stafford Noble and
                  Zhi{-}jun Duan and
                  Mirela Andronescu and
                  Kevin Schutz and
                  Sean McIlwain and
                  Yoo Jung Kim and
                  Choli Lee and
                  Jay Shendure and
                  Stanley Fields and
                  C. Anthony Blau},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {A Three-Dimensional Model of the Yeast Genome},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {320},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_28},
  doi          = {10.1007/978-3-642-20036-6\_28},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/NobleDASMKLSFB11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ParkerGB11,
  author       = {Andrew S. Parker and
                  Karl E. Griswold and
                  Chris Bailey{-}Kellogg},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Optimization of Combinatorial Mutagenesis},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {321--335},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_29},
  doi          = {10.1007/978-3-642-20036-6\_29},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/ParkerGB11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PengL11,
  author       = {Hanchuan Peng and
                  Fuhui Long},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Seeing More Is Knowing More: {V3D} Enables Real-Time 3D Visualization
                  and Quantitative Analysis of Large-Scale Biological Image Data Sets},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {336},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_30},
  doi          = {10.1007/978-3-642-20036-6\_30},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/PengL11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PengLYC11,
  author       = {Yu Peng and
                  Henry C. M. Leung and
                  Siu{-}Ming Yiu and
                  Francis Y. L. Chin},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {{T-IDBA:} {A} de novo Iterative de Bruijn Graph Assembler for Transcriptome
                  - (Extended Abstract)},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {337--338},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_31},
  doi          = {10.1007/978-3-642-20036-6\_31},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/PengLYC11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PetriKZ11,
  author       = {Tobias Petri and
                  Robert K{\"{u}}ffner and
                  Ralf Zimmer},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Experiment Specific Expression Patterns},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {339--354},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_32},
  doi          = {10.1007/978-3-642-20036-6\_32},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/PetriKZ11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PratFLL11,
  author       = {Yosef Prat and
                  Menachem Fromer and
                  Michal Linial and
                  Nathan Linial},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Geometric Interpretation of Gene Expression by Sparse Reconstruction
                  of Transcript Profiles},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {355--357},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_33},
  doi          = {10.1007/978-3-642-20036-6\_33},
  timestamp    = {Sat, 05 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/PratFLL11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ReuveniMKRT11,
  author       = {Shlomi Reuveni and
                  Isaac Meilijson and
                  Martin Kupiec and
                  Eytan Ruppin and
                  Tamir Tuller},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {A Ribosome Flow Model for Analyzing Translation Elongation - (Extended
                  Abstract)},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {358--360},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_34},
  doi          = {10.1007/978-3-642-20036-6\_34},
  timestamp    = {Sat, 21 Oct 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/ReuveniMKRT11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/RobertsCBMD11,
  author       = {Kyle E. Roberts and
                  Patrick R. Cushing and
                  Prisca Boisguerin and
                  Dean R. Madden and
                  Bruce Randall Donald},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Design of Protein-Protein Interactions with a Novel Ensemble-Based
                  Scoring Algorithm},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {361--376},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_35},
  doi          = {10.1007/978-3-642-20036-6\_35},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/RobertsCBMD11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ScheubertHRB11,
  author       = {Kerstin Scheubert and
                  Franziska Hufsky and
                  Florian Rasche and
                  Sebastian B{\"{o}}cker},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Computing Fragmentation Trees from Metabolite Multiple Mass Spectrometry
                  Data},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {377--391},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_36},
  doi          = {10.1007/978-3-642-20036-6\_36},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/ScheubertHRB11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SeferK11,
  author       = {Emre Sefer and
                  Carl Kingsford},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Metric Labeling and Semi-metric Embedding for Protein Annotation Prediction},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {392--407},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_37},
  doi          = {10.1007/978-3-642-20036-6\_37},
  timestamp    = {Sun, 25 Oct 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/SeferK11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ShenkerODBW11,
  author       = {Solomon Shenker and
                  Charles W. O'Donnell and
                  Srinivas Devadas and
                  Bonnie Berger and
                  J{\'{e}}r{\^{o}}me Waldisp{\"{u}}hl},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Efficient Traversal of Beta-Sheet Protein Folding Pathways Using Ensemble
                  Models},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {408--423},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_38},
  doi          = {10.1007/978-3-642-20036-6\_38},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/ShenkerODBW11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SilverbushES11,
  author       = {Dana Silverbush and
                  Michael Elberfeld and
                  Roded Sharan},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Optimally Orienting Physical Networks},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {424--436},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_39},
  doi          = {10.1007/978-3-642-20036-6\_39},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/SilverbushES11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SulHE11,
  author       = {Jae Hoon Sul and
                  Buhm Han and
                  Eleazar Eskin},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Increasing Power of Groupwise Association Test with Likelihood Ratio
                  Test},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {452--467},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_41},
  doi          = {10.1007/978-3-642-20036-6\_41},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/SulHE11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/TarpineLI11,
  author       = {Ryan Tarpine and
                  Fumei Lam and
                  Sorin Istrail},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Conservative Extensions of Linkage Disequilibrium Measures from Pairwise
                  to Multi-loci and Algorithms for Optimal Tagging {SNP} Selection},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {468--482},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_42},
  doi          = {10.1007/978-3-642-20036-6\_42},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/TarpineLI11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/TripathyZZD11,
  author       = {Chittaranjan Tripathy and
                  Jianyang Zeng and
                  Pei Zhou and
                  Bruce Randall Donald},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Protein Loop Closure Using Orientational Restraints from {NMR} Data},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {483--498},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_43},
  doi          = {10.1007/978-3-642-20036-6\_43},
  timestamp    = {Wed, 02 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/TripathyZZD11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/VandinUR11,
  author       = {Fabio Vandin and
                  Eli Upfal and
                  Benjamin J. Raphael},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {\emph{De Novo} Discovery of Mutated Driver Pathways in Cancer},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {499--500},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_44},
  doi          = {10.1007/978-3-642-20036-6\_44},
  timestamp    = {Mon, 16 Sep 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/VandinUR11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WaldispuhlP11,
  author       = {J{\'{e}}r{\^{o}}me Waldisp{\"{u}}hl and
                  Yann Ponty},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {An Unbiased Adaptive Sampling Algorithm for the Exploration of {RNA}
                  Mutational Landscapes under Evolutionary Pressure},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {501--515},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_45},
  doi          = {10.1007/978-3-642-20036-6\_45},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/WaldispuhlP11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WauthierJJ11,
  author       = {Fabian L. Wauthier and
                  Michael I. Jordan and
                  Nebojsa Jojic},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Nonparametric Combinatorial Sequence Models},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {516--530},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_46},
  doi          = {10.1007/978-3-642-20036-6\_46},
  timestamp    = {Mon, 15 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/WauthierJJ11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/YuWN11,
  author       = {Yun Yu and
                  Tandy J. Warnow and
                  Luay Nakhleh},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Algorithms for MDC-Based Multi-locus Phylogeny Inference},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {531--545},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_47},
  doi          = {10.1007/978-3-642-20036-6\_47},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/YuWN11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZakovGEZ11,
  author       = {Shay Zakov and
                  Yoav Goldberg and
                  Michael Elhadad and
                  Michal Ziv{-}Ukelson},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Rich Parameterization Improves {RNA} Structure Prediction},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {546--562},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_48},
  doi          = {10.1007/978-3-642-20036-6\_48},
  timestamp    = {Sat, 19 Oct 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/ZakovGEZ11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZengRZD11,
  author       = {Jianyang Zeng and
                  Kyle E. Roberts and
                  Pei Zhou and
                  Bruce Randall Donald},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {A Bayesian Approach for Determining Protein Side-Chain Rotamer Conformations
                  Using Unassigned {NOE} Data},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {563--578},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_49},
  doi          = {10.1007/978-3-642-20036-6\_49},
  timestamp    = {Wed, 02 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/ZengRZD11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/recomb/2011,
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6},
  doi          = {10.1007/978-3-642-20036-6},
  isbn         = {978-3-642-20035-9},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/2011.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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