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@book{DBLP:series/cb/Ramsden23,
author = {Jeremy Ramsden},
title = {Bioinformatics - An Introduction, 4th Edition},
series = {Computational Biology},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-030-45607-8},
doi = {10.1007/978-3-030-45607-8},
isbn = {978-3-030-45606-1},
timestamp = {Tue, 10 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/Ramsden23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:series/cb/Hauswedell22,
author = {Hannes Hauswedell},
title = {Sequence Analysis and Modern {C++} - The Creation of the SeqAn3 Bioinformatics
Library, 2},
series = {Computational Biology},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-030-90990-1},
doi = {10.1007/978-3-030-90990-1},
isbn = {978-3-030-90989-5},
timestamp = {Tue, 15 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/series/cb/Hauswedell22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:series/cb/SaeedHK22,
author = {Fahad Saeed and
Muhammad Haseeb and
Sumesh Kumar},
title = {High-Performance Algorithms for Mass Spectrometry-Based Omics},
series = {Computational Biology},
volume = {34},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-01960-9},
doi = {10.1007/978-3-031-01960-9},
isbn = {978-3-031-01959-3},
timestamp = {Sat, 17 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/SaeedHK22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/0013GT19,
author = {Bing Liu and
Benjamin M. Gyori and
P. S. Thiagarajan},
editor = {Pietro Li{\`{o}} and
Paolo Zuliani},
title = {Statistical Model Checking-Based Analysis of Biological Networks},
booktitle = {Automated Reasoning for Systems Biology and Medicine},
series = {Computational Biology},
volume = {30},
pages = {63--92},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-17297-8\_3},
doi = {10.1007/978-3-030-17297-8\_3},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/0013GT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/BenesBPS19,
author = {Nikola Benes and
Lubos Brim and
Samuel Pastva and
David Safr{\'{a}}nek},
editor = {Pietro Li{\`{o}} and
Paolo Zuliani},
title = {Model Checking Approach to the Analysis of Biological Systems},
booktitle = {Automated Reasoning for Systems Biology and Medicine},
series = {Computational Biology},
volume = {30},
pages = {3--35},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-17297-8\_1},
doi = {10.1007/978-3-030-17297-8\_1},
timestamp = {Thu, 13 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/BenesBPS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/BernardeschiDM19,
author = {Cinzia Bernardeschi and
Andrea Domenici and
Paolo Masci},
editor = {Pietro Li{\`{o}} and
Paolo Zuliani},
title = {Logic-Based Formalization of System Requirements for Integrated Clinical
Environments},
booktitle = {Automated Reasoning for Systems Biology and Medicine},
series = {Computational Biology},
volume = {30},
pages = {215--242},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-17297-8\_8},
doi = {10.1007/978-3-030-17297-8\_8},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/BernardeschiDM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/BosnackiRV19,
author = {Dragan Bosnacki and
Natal A. W. van Riel and
Mitko Veta},
editor = {Pietro Li{\`{o}} and
Paolo Zuliani},
title = {Deep Learning with Convolutional Neural Networks for Histopathology
Image Analysis},
booktitle = {Automated Reasoning for Systems Biology and Medicine},
series = {Computational Biology},
volume = {30},
pages = {453--469},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-17297-8\_17},
doi = {10.1007/978-3-030-17297-8\_17},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/series/cb/BosnackiRV19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/BowlesC19,
author = {Juliana K{\"{u}}ster Filipe Bowles and
Marco B. Caminati},
editor = {Pietro Li{\`{o}} and
Paolo Zuliani},
title = {Balancing Prescriptions with Constraint Solvers},
booktitle = {Automated Reasoning for Systems Biology and Medicine},
series = {Computational Biology},
volume = {30},
pages = {243--267},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-17297-8\_9},
doi = {10.1007/978-3-030-17297-8\_9},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/series/cb/BowlesC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/ClarkeWPHF19,
author = {Matthew A. Clarke and
Steven Woodhouse and
Nir Piterman and
Benjamin A. Hall and
Jasmin Fisher},
editor = {Pietro Li{\`{o}} and
Paolo Zuliani},
title = {Using State Space Exploration to Determine How Gene Regulatory Networks
Constrain Mutation Order in Cancer Evolution},
booktitle = {Automated Reasoning for Systems Biology and Medicine},
series = {Computational Biology},
volume = {30},
pages = {133--153},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-17297-8\_5},
doi = {10.1007/978-3-030-17297-8\_5},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/series/cb/ClarkeWPHF19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/DangDFMPR19,
author = {Thao Dang and
Tommaso Dreossi and
Eric Fanchon and
Oded Maler and
Carla Piazza and
Alexandre Rocca},
editor = {Pietro Li{\`{o}} and
Paolo Zuliani},
title = {Set-Based Analysis for Biological Modeling},
booktitle = {Automated Reasoning for Systems Biology and Medicine},
series = {Computational Biology},
volume = {30},
pages = {157--189},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-17297-8\_6},
doi = {10.1007/978-3-030-17297-8\_6},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/series/cb/DangDFMPR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/DunnY19,
author = {Sara{-}Jane Dunn and
Boyan Yordanov},
editor = {Pietro Li{\`{o}} and
Paolo Zuliani},
title = {Automated Reasoning for the Synthesis and Analysis of Biological Programs},
booktitle = {Automated Reasoning for Systems Biology and Medicine},
series = {Computational Biology},
volume = {30},
pages = {37--62},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-17297-8\_2},
doi = {10.1007/978-3-030-17297-8\_2},
timestamp = {Thu, 13 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/DunnY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/IsmailHH19,
author = {Amr Ismail and
Mostafa Herajy and
Monika Heiner},
editor = {Pietro Li{\`{o}} and
Paolo Zuliani},
title = {A Graphical Approach for Hybrid Modelling of Intracellular Calcium
Dynamics Based on Coloured Hybrid Petri Nets},
booktitle = {Automated Reasoning for Systems Biology and Medicine},
series = {Computational Biology},
volume = {30},
pages = {349--367},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-17297-8\_13},
doi = {10.1007/978-3-030-17297-8\_13},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/series/cb/IsmailHH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/KushnerBCFMS19,
author = {Taisa Kushner and
B. Wayne Bequette and
Faye Cameron and
Gregory P. Forlenza and
David M. Maahs and
Sriram Sankaranarayanan},
editor = {Pietro Li{\`{o}} and
Paolo Zuliani},
title = {Models, Devices, Properties, and Verification of Artificial Pancreas
Systems},
booktitle = {Automated Reasoning for Systems Biology and Medicine},
series = {Computational Biology},
volume = {30},
pages = {93--131},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-17297-8\_4},
doi = {10.1007/978-3-030-17297-8\_4},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/KushnerBCFMS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/Neupane0M0M19,
author = {Thakur Neupane and
Zhen Zhang and
Curtis Madsen and
Hao Zheng and
Chris J. Myers},
editor = {Pietro Li{\`{o}} and
Paolo Zuliani},
title = {Approximation Techniques for Stochastic Analysis of Biological Systems},
booktitle = {Automated Reasoning for Systems Biology and Medicine},
series = {Computational Biology},
volume = {30},
pages = {327--348},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-17297-8\_12},
doi = {10.1007/978-3-030-17297-8\_12},
timestamp = {Thu, 13 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/Neupane0M0M19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/PachecoBS19,
author = {Maria Pires Pacheco and
Tamara Bintener and
Thomas Sauter},
editor = {Pietro Li{\`{o}} and
Paolo Zuliani},
title = {Towards the Integration of Metabolic Network Modelling and Machine
Learning for the Routine Analysis of High-Throughput Patient Data},
booktitle = {Automated Reasoning for Systems Biology and Medicine},
series = {Computational Biology},
volume = {30},
pages = {401--424},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-17297-8\_15},
doi = {10.1007/978-3-030-17297-8\_15},
timestamp = {Thu, 13 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/PachecoBS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/RazzaqCJMGB19,
author = {Misbah Razzaq and
Lokmane Chebouba and
Pierre Le Jeune and
Hanen Mhamdi and
Carito Guziolowski and
J{\'{e}}r{\'{e}}mie Bourdon},
editor = {Pietro Li{\`{o}} and
Paolo Zuliani},
title = {Logic and Linear Programs to Understand Cancer Response},
booktitle = {Automated Reasoning for Systems Biology and Medicine},
series = {Computational Biology},
volume = {30},
pages = {191--213},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-17297-8\_7},
doi = {10.1007/978-3-030-17297-8\_7},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/RazzaqCJMGB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/SamalKEL0R19,
author = {Satya Swarup Samal and
Jeyashree Krishnan and
Ali Hadizadeh Esfahani and
Christoph L{\"{u}}ders and
Andreas Weber and
Ovidiu Radulescu},
editor = {Pietro Li{\`{o}} and
Paolo Zuliani},
title = {Metastable Regimes and Tipping Points of Biochemical Networks with
Potential Applications in Precision Medicine},
booktitle = {Automated Reasoning for Systems Biology and Medicine},
series = {Computational Biology},
volume = {30},
pages = {269--295},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-17297-8\_10},
doi = {10.1007/978-3-030-17297-8\_10},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/SamalKEL0R19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/SimalatsarGRB19,
author = {Alena Simalatsar and
Monia Guidi and
Pierre Roduit and
Thierry Buclin},
editor = {Pietro Li{\`{o}} and
Paolo Zuliani},
title = {Methods for Personalised Delivery Rate Computation for {IV} Administered
Anesthetic Propofol},
booktitle = {Automated Reasoning for Systems Biology and Medicine},
series = {Computational Biology},
volume = {30},
pages = {369--397},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-17297-8\_14},
doi = {10.1007/978-3-030-17297-8\_14},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/series/cb/SimalatsarGRB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/VissatHW19,
author = {Ludovica Luisa Vissat and
Jane Hillston and
Anna Williams},
editor = {Pietro Li{\`{o}} and
Paolo Zuliani},
title = {Stochastic Spatial Modelling of the Remyelination Process in Multiple
Sclerosis Lesions},
booktitle = {Automated Reasoning for Systems Biology and Medicine},
series = {Computational Biology},
volume = {30},
pages = {299--326},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-17297-8\_11},
doi = {10.1007/978-3-030-17297-8\_11},
timestamp = {Thu, 13 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/VissatHW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/YamanAB19,
author = {Fusun Yaman and
Aaron Adler and
Jacob Beal},
editor = {Pietro Li{\`{o}} and
Paolo Zuliani},
title = {Opportunities and Challenges in Applying Artificial Intelligence to
Bioengineering},
booktitle = {Automated Reasoning for Systems Biology and Medicine},
series = {Computational Biology},
volume = {30},
pages = {425--452},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-17297-8\_16},
doi = {10.1007/978-3-030-17297-8\_16},
timestamp = {Thu, 13 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/YamanAB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:series/cb/30,
editor = {Pietro Li{\`{o}} and
Paolo Zuliani},
title = {Automated Reasoning for Systems Biology and Medicine},
series = {Computational Biology},
volume = {30},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-17297-8},
doi = {10.1007/978-3-030-17297-8},
isbn = {978-3-030-17296-1},
timestamp = {Thu, 13 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/30.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:series/cb/Mrozek18,
author = {Dariusz Mrozek},
title = {Scalable Big Data Analytics for Protein Bioinformatics - Efficient
Computational Solutions for Protein Structures},
series = {Computational Biology},
volume = {28},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-98839-9},
doi = {10.1007/978-3-319-98839-9},
isbn = {978-3-319-98838-2},
timestamp = {Wed, 03 Oct 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/Mrozek18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:series/cb/BhowmickS17,
author = {Sourav S. Bhowmick and
Boon{-}Siew Seah},
title = {Summarizing Biological Networks},
series = {Computational Biology},
volume = {24},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-54621-6},
doi = {10.1007/978-3-319-54621-6},
isbn = {978-3-319-54620-9},
timestamp = {Tue, 16 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/BhowmickS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:series/cb/DeBlasioK17,
author = {Dan F. DeBlasio and
John D. Kececioglu},
title = {Parameter Advising for Multiple Sequence Alignment},
series = {Computational Biology},
volume = {26},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-64918-4},
doi = {10.1007/978-3-319-64918-4},
isbn = {978-3-319-64917-7},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/DeBlasioK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:series/cb/FrommletBR16,
author = {Florian Frommlet and
Malgorzata Bogdan and
David Ramsey},
title = {Phenotypes and Genotypes - The Search for Influential Genes},
series = {Computational Biology},
volume = {18},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-1-4471-5310-8},
doi = {10.1007/978-1-4471-5310-8},
isbn = {978-1-4471-5309-2},
timestamp = {Wed, 21 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/series/cb/FrommletBR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/0001K16,
author = {J{\"{o}}rg Ackermann and
Ina Koch},
editor = {Ina Koch and
Wolfgang Reisig and
Falk Schreiber},
title = {Quantitative Analysis},
booktitle = {Modeling in Systems Biology, The Petri Net Approach},
series = {Computational Biology},
volume = {16},
pages = {153--178},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-1-84996-474-6\_8},
doi = {10.1007/978-1-84996-474-6\_8},
timestamp = {Mon, 05 Feb 2024 20:35:58 +0100},
biburl = {https://dblp.org/rec/series/cb/0001K16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/BanksKS16,
author = {Richard Banks and
Victor Khomenko and
L. Jason Steggles},
editor = {Ina Koch and
Wolfgang Reisig and
Falk Schreiber},
title = {Modeling Genetic Regulatory Networks},
booktitle = {Modeling in Systems Biology, The Petri Net Approach},
series = {Computational Biology},
volume = {16},
pages = {73--100},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-1-84996-474-6\_5},
doi = {10.1007/978-1-84996-474-6\_5},
timestamp = {Thu, 13 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/BanksKS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/ChaouiyaKP16,
author = {Claudine Chaouiya and
Hanna Klaudel and
Franck Pommereau},
editor = {Ina Koch and
Wolfgang Reisig and
Falk Schreiber},
title = {A Modular, Qualitative Modeling of Regulatory Networks Using Petri
Nets},
booktitle = {Modeling in Systems Biology, The Petri Net Approach},
series = {Computational Biology},
volume = {16},
pages = {253--279},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-1-84996-474-6\_12},
doi = {10.1007/978-1-84996-474-6\_12},
timestamp = {Thu, 13 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/ChaouiyaKP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/HardyI16,
author = {Simon Hardy and
Ravi Iyengar},
editor = {Ina Koch and
Wolfgang Reisig and
Falk Schreiber},
title = {Analysis of Dynamical Models of Signaling Networks with Petri Nets
and Dynamic Graphs},
booktitle = {Modeling in Systems Biology, The Petri Net Approach},
series = {Computational Biology},
volume = {16},
pages = {225--251},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-1-84996-474-6\_11},
doi = {10.1007/978-1-84996-474-6\_11},
timestamp = {Thu, 13 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/HardyI16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/KochS16,
author = {Ina Koch and
Falk Schreiber},
editor = {Ina Koch and
Wolfgang Reisig and
Falk Schreiber},
title = {Introduction},
booktitle = {Modeling in Systems Biology, The Petri Net Approach},
series = {Computational Biology},
volume = {16},
pages = {3--18},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-1-84996-474-6\_1},
doi = {10.1007/978-1-84996-474-6\_1},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/series/cb/KochS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/LiivingBJ16,
author = {Tiina Liiving and
Syed Murtuza Baker and
Bj{\"{o}}rn H. Junker},
editor = {Ina Koch and
Wolfgang Reisig and
Falk Schreiber},
title = {Biochemical Fundamentals},
booktitle = {Modeling in Systems Biology, The Petri Net Approach},
series = {Computational Biology},
volume = {16},
pages = {19--36},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-1-84996-474-6\_2},
doi = {10.1007/978-1-84996-474-6\_2},
timestamp = {Thu, 13 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/LiivingBJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/MitouMMI16,
author = {Natsumi Mitou and
Hiroshi Matsuno and
Satoru Miyano and
Shin{-}Ichi T. Inouye},
editor = {Ina Koch and
Wolfgang Reisig and
Falk Schreiber},
title = {A Case Study of {HFPN} Simulation: Finding Essential Roles of Ror
Gene in the Interaction of Feedback Loops in Mammalian Circadian Clock},
booktitle = {Modeling in Systems Biology, The Petri Net Approach},
series = {Computational Biology},
volume = {16},
pages = {281--306},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-1-84996-474-6\_13},
doi = {10.1007/978-1-84996-474-6\_13},
timestamp = {Thu, 13 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/MitouMMI16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/Mura16,
author = {Ivan Mura},
editor = {Ina Koch and
Wolfgang Reisig and
Falk Schreiber},
title = {Stochastic Modeling},
booktitle = {Modeling in Systems Biology, The Petri Net Approach},
series = {Computational Biology},
volume = {16},
pages = {121--151},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-1-84996-474-6\_7},
doi = {10.1007/978-1-84996-474-6\_7},
timestamp = {Mon, 16 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/Mura16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/Reisig16,
author = {Wolfgang Reisig},
editor = {Ina Koch and
Wolfgang Reisig and
Falk Schreiber},
title = {Petri Nets},
booktitle = {Modeling in Systems Biology, The Petri Net Approach},
series = {Computational Biology},
volume = {16},
pages = {37--56},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-1-84996-474-6\_3},
doi = {10.1007/978-1-84996-474-6\_3},
timestamp = {Thu, 13 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/Reisig16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/Sackmann16,
author = {Andrea Sackmann},
editor = {Ina Koch and
Wolfgang Reisig and
Falk Schreiber},
title = {Discrete Modeling},
booktitle = {Modeling in Systems Biology, The Petri Net Approach},
series = {Computational Biology},
volume = {16},
pages = {59--72},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-1-84996-474-6\_4},
doi = {10.1007/978-1-84996-474-6\_4},
timestamp = {Thu, 13 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/Sackmann16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/SaitoNMM16,
author = {Ayumu Saito and
Masao Nagasaki and
Hiroshi Matsuno and
Satoru Miyano},
editor = {Ina Koch and
Wolfgang Reisig and
Falk Schreiber},
title = {Hybrid Functional Petri Net with Extension for Dynamic Pathway Modeling},
booktitle = {Modeling in Systems Biology, The Petri Net Approach},
series = {Computational Biology},
volume = {16},
pages = {101--120},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-1-84996-474-6\_6},
doi = {10.1007/978-1-84996-474-6\_6},
timestamp = {Thu, 13 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/SaitoNMM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/SchusterJ16,
author = {Stefan Schuster and
Bj{\"{o}}rn H. Junker},
editor = {Ina Koch and
Wolfgang Reisig and
Falk Schreiber},
title = {Topological Analysis of Metabolic and Regulatory Networks},
booktitle = {Modeling in Systems Biology, The Petri Net Approach},
series = {Computational Biology},
volume = {16},
pages = {209--224},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-1-84996-474-6\_10},
doi = {10.1007/978-1-84996-474-6\_10},
timestamp = {Thu, 13 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/SchusterJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/Wagler16,
author = {Annegret Wagler},
editor = {Ina Koch and
Wolfgang Reisig and
Falk Schreiber},
title = {Prediction of Network Structure},
booktitle = {Modeling in Systems Biology, The Petri Net Approach},
series = {Computational Biology},
volume = {16},
pages = {307--336},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-1-84996-474-6\_14},
doi = {10.1007/978-1-84996-474-6\_14},
timestamp = {Thu, 13 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/Wagler16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/WindhagerEZ16,
author = {Lukas Windhager and
Florian Erhard and
Ralf Zimmer},
editor = {Ina Koch and
Wolfgang Reisig and
Falk Schreiber},
title = {Fuzzy Modeling},
booktitle = {Modeling in Systems Biology, The Petri Net Approach},
series = {Computational Biology},
volume = {16},
pages = {179--205},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-1-84996-474-6\_9},
doi = {10.1007/978-1-84996-474-6\_9},
timestamp = {Thu, 13 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/WindhagerEZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:series/cb/Axelson-Fisk15,
author = {Marina Axelson{-}Fisk},
title = {Comparative Gene Finding - Models, Algorithms and Implementation},
series = {Computational Biology},
volume = {20},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-1-4471-6693-1},
doi = {10.1007/978-1-4471-6693-1},
isbn = {978-1-4471-6692-4},
timestamp = {Tue, 16 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/Axelson-Fisk15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:series/cb/Erciyes15,
author = {Kayhan Erciyes},
title = {Distributed and Sequential Algorithms for Bioinformatics},
series = {Computational Biology},
volume = {23},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-24966-7},
doi = {10.1007/978-3-319-24966-7},
isbn = {978-3-319-24964-3},
timestamp = {Tue, 16 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/Erciyes15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:series/cb/Ramsden15,
author = {Jeremy Ramsden},
title = {Bioinformatics - An Introduction, Third Edition},
series = {Computational Biology},
volume = {21},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-1-4471-6702-0},
doi = {10.1007/978-1-4471-6702-0},
isbn = {978-1-4471-6701-3},
timestamp = {Tue, 16 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/Ramsden15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:series/cb/Saitou13,
author = {Naruya Saitou},
title = {Introduction to Evolutionary Genomics},
series = {Computational Biology},
volume = {17},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-1-4471-5304-7},
doi = {10.1007/978-1-4471-5304-7},
isbn = {978-1-4471-5303-0},
timestamp = {Tue, 16 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/Saitou13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:series/cb/16,
editor = {Ina Koch and
Wolfgang Reisig and
Falk Schreiber},
title = {Modeling in Systems Biology, The Petri Net Approach},
series = {Computational Biology},
volume = {16},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-1-84996-474-6},
doi = {10.1007/978-1-84996-474-6},
isbn = {978-1-84996-473-9},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/series/cb/16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:series/cb/Axelson-Fisk10,
author = {Marina Axelson{-}Fisk},
title = {Comparative Gene Finding - Models, Algorithms and Implementation},
series = {Computational Biology},
volume = {11},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-1-84996-104-2},
doi = {10.1007/978-1-84996-104-2},
isbn = {978-1-84996-103-5},
timestamp = {Tue, 16 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/Axelson-Fisk10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:books/daglib/0031651,
author = {Masao Nagasaki and
Ayumu Saito and
Atsushi Doi and
Hiroshi Matsuno and
Satoru Miyano},
title = {Foundations of Systems Biology - Using Cell Illustrator{\textregistered}
and Pathway Databases},
series = {Computational Biology},
volume = {13},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-1-84882-023-4},
doi = {10.1007/978-1-84882-023-4},
isbn = {978-1-84882-022-7},
timestamp = {Tue, 16 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/daglib/0031651.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:series/cb/ChaoZ09,
author = {Kun{-}Mao Chao and
Louxin Zhang},
title = {Sequence Comparison - Theory and Methods},
series = {Computational Biology},
volume = {7},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-1-84800-320-0},
doi = {10.1007/978-1-84800-320-0},
isbn = {978-1-84800-319-4},
timestamp = {Tue, 16 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/ChaoZ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:series/cb/Ramsden09,
author = {Jeremy J. Ramsden},
title = {Bioinformatics: An Introduction, Second Edition},
series = {Computational Biology},
volume = {10},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-1-84800-257-9},
doi = {10.1007/978-1-84800-257-9},
isbn = {978-1-84800-256-2},
timestamp = {Tue, 16 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/Ramsden09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:series/cb/UsseryWB09,
author = {David Ussery and
Trudy M. Wassenaar and
Stefano Borini},
title = {Computing for Comparative Microbial Genomics - Bioinformatics for
Microbiologists},
series = {Computational Biology},
volume = {8},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-1-84800-255-5},
doi = {10.1007/978-1-84800-255-5},
isbn = {978-1-84800-254-8},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/series/cb/UsseryWB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/sp/08/000108a,
author = {Mona Singh},
editor = {Anna R. Panchenko and
Teresa M. Przytycka},
title = {From Protein Interaction Networks to Protein Function},
booktitle = {Protein-protein Interactions and Networks: Identification, Computer
Analysis, and Prediction},
series = {Computational Biology},
volume = {9},
pages = {139--162},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-1-84800-125-1\_8},
doi = {10.1007/978-1-84800-125-1\_8},
timestamp = {Thu, 28 May 2020 13:10:24 +0200},
biburl = {https://dblp.org/rec/books/sp/08/000108a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/sp/08/AlberCRS08,
author = {Frank Alber and
Brian T. Chait and
Michael P. Rout and
Andrej Sali},
editor = {Anna R. Panchenko and
Teresa M. Przytycka},
title = {Integrative Structure Determination of Protein Assemblies by Satisfaction
of Spatial Restraints},
booktitle = {Protein-protein Interactions and Networks: Identification, Computer
Analysis, and Prediction},
series = {Computational Biology},
volume = {9},
pages = {99--114},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-1-84800-125-1\_6},
doi = {10.1007/978-1-84800-125-1\_6},
timestamp = {Thu, 28 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/sp/08/AlberCRS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/sp/08/GuimaraesP08,
author = {Katia S. Guimar{\~{a}}es and
Teresa M. Przytycka},
editor = {Anna R. Panchenko and
Teresa M. Przytycka},
title = {Protein Interaction Network Based Prediction of Domain-Domain and
Domain-Peptide Interactions},
booktitle = {Protein-protein Interactions and Networks: Identification, Computer
Analysis, and Prediction},
series = {Computational Biology},
volume = {9},
pages = {83--98},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-1-84800-125-1\_5},
doi = {10.1007/978-1-84800-125-1\_5},
timestamp = {Thu, 28 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/sp/08/GuimaraesP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/sp/08/KeskinGN08,
author = {Ozlem Keskin and
Attila G{\"{u}}rsoy and
Ruth Nussinov},
editor = {Anna R. Panchenko and
Teresa M. Przytycka},
title = {Principles of Protein Recognition and Properties of Protein-protein
Interfaces},
booktitle = {Protein-protein Interactions and Networks: Identification, Computer
Analysis, and Prediction},
series = {Computational Biology},
volume = {9},
pages = {53--65},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-1-84800-125-1\_3},
doi = {10.1007/978-1-84800-125-1\_3},
timestamp = {Thu, 28 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/sp/08/KeskinGN08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/sp/08/Maslov08,
author = {Sergei Maslov},
editor = {Anna R. Panchenko and
Teresa M. Przytycka},
title = {Topological and Dynamical Properties of Protein Interaction Networks},
booktitle = {Protein-protein Interactions and Networks: Identification, Computer
Analysis, and Prediction},
series = {Computational Biology},
volume = {9},
pages = {115--137},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-1-84800-125-1\_7},
doi = {10.1007/978-1-84800-125-1\_7},
timestamp = {Thu, 28 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/sp/08/Maslov08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/sp/08/ShoemakerP08,
author = {Benjamin A. Shoemaker and
Anna R. Panchenko},
editor = {Anna R. Panchenko and
Teresa M. Przytycka},
title = {Handling Diverse Protein Interaction Data: Integration, Storage and
Retrieval},
booktitle = {Protein-protein Interactions and Networks: Identification, Computer
Analysis, and Prediction},
series = {Computational Biology},
volume = {9},
pages = {33--51},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-1-84800-125-1\_2},
doi = {10.1007/978-1-84800-125-1\_2},
timestamp = {Thu, 28 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/sp/08/ShoemakerP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/sp/08/UetzTC08,
author = {Peter Uetz and
Bj{\"{o}}rn Titz and
Gerard Cagney},
editor = {Anna R. Panchenko and
Teresa M. Przytycka},
title = {Experimental Methods for Protein Interaction Identification and Characterization},
booktitle = {Protein-protein Interactions and Networks: Identification, Computer
Analysis, and Prediction},
series = {Computational Biology},
volume = {9},
pages = {1--32},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-1-84800-125-1\_1},
doi = {10.1007/978-1-84800-125-1\_1},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/sp/08/UetzTC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/sp/08/ValenciaP08,
author = {Alfonso Valencia and
Florencio Pazos},
editor = {Anna R. Panchenko and
Teresa M. Przytycka},
title = {Computational Methods to Predict Protein Interaction Partners},
booktitle = {Protein-protein Interactions and Networks: Identification, Computer
Analysis, and Prediction},
series = {Computational Biology},
volume = {9},
pages = {67--81},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-1-84800-125-1\_4},
doi = {10.1007/978-1-84800-125-1\_4},
timestamp = {Thu, 28 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/sp/08/ValenciaP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/sp/08/YosefRS08,
author = {Nir Yosef and
Eytan Ruppin and
Roded Sharan},
editor = {Anna R. Panchenko and
Teresa M. Przytycka},
title = {Cross-Species Analysis of Protein-protein Interaction Networks},
booktitle = {Protein-protein Interactions and Networks: Identification, Computer
Analysis, and Prediction},
series = {Computational Biology},
volume = {9},
pages = {163--185},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-1-84800-125-1\_9},
doi = {10.1007/978-1-84800-125-1\_9},
timestamp = {Thu, 28 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/sp/08/YosefRS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/AitkenC08,
author = {J. Stuart Aitken and
Yin Chen},
editor = {Albert Burger and
Duncan Davidson and
Richard A. Baldock},
title = {COBrA and COBrA-CT: Ontology Engineering Tools},
booktitle = {Anatomy Ontologies for Bioinformatics, Principles and Practice},
series = {Computational Biology},
volume = {6},
pages = {151--162},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-1-84628-885-2\_7},
doi = {10.1007/978-1-84628-885-2\_7},
timestamp = {Thu, 13 Jun 2019 09:41:49 +0200},
biburl = {https://dblp.org/rec/series/cb/AitkenC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/BaldockB08,
author = {Richard A. Baldock and
Albert Burger},
editor = {Albert Burger and
Duncan Davidson and
Richard A. Baldock},
title = {Anatomical Ontologies: Linking Names to Places in Biology},
booktitle = {Anatomy Ontologies for Bioinformatics, Principles and Practice},
series = {Computational Biology},
volume = {6},
pages = {197--211},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-1-84628-885-2\_10},
doi = {10.1007/978-1-84628-885-2\_10},
timestamp = {Thu, 13 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/BaldockB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/BaldockD08,
author = {Richard A. Baldock and
Duncan Davidson},
editor = {Albert Burger and
Duncan Davidson and
Richard A. Baldock},
title = {The Edinburgh Mouse Atlas},
booktitle = {Anatomy Ontologies for Bioinformatics, Principles and Practice},
series = {Computational Biology},
volume = {6},
pages = {249--265},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-1-84628-885-2\_12},
doi = {10.1007/978-1-84628-885-2\_12},
timestamp = {Thu, 13 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/BaldockD08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/Bard08,
author = {Jonathan Bard},
editor = {Albert Burger and
Duncan Davidson and
Richard A. Baldock},
title = {Anatomical Ontologies for Model Organisms: The Fungi and Animals},
booktitle = {Anatomy Ontologies for Bioinformatics, Principles and Practice},
series = {Computational Biology},
volume = {6},
pages = {3--25},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-1-84628-885-2\_1},
doi = {10.1007/978-1-84628-885-2\_1},
timestamp = {Thu, 13 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/Bard08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/BittnerDGN08,
author = {Thomas Bittner and
Maureen Donnelly and
Louis J. Goldberg and
Fabian Neuhaus},
editor = {Albert Burger and
Duncan Davidson and
Richard A. Baldock},
title = {Modeling Principles and Methodologies - Spatial Representation and
Reasoning},
booktitle = {Anatomy Ontologies for Bioinformatics, Principles and Practice},
series = {Computational Biology},
volume = {6},
pages = {307--326},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-1-84628-885-2\_15},
doi = {10.1007/978-1-84628-885-2\_15},
timestamp = {Thu, 13 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/BittnerDGN08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/BurgerB08,
author = {Albert Burger and
Jonathan Bard},
editor = {Albert Burger and
Duncan Davidson and
Richard A. Baldock},
title = {{XSPAN} - {A} Cross-Species Anatomy Network},
booktitle = {Anatomy Ontologies for Bioinformatics, Principles and Practice},
series = {Computational Biology},
volume = {6},
pages = {163--175},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-1-84628-885-2\_8},
doi = {10.1007/978-1-84628-885-2\_8},
timestamp = {Thu, 13 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/BurgerB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/Davidson08,
author = {Duncan Davidson},
editor = {Albert Burger and
Duncan Davidson and
Richard A. Baldock},
title = {Time in Anatomy},
booktitle = {Anatomy Ontologies for Bioinformatics, Principles and Practice},
series = {Computational Biology},
volume = {6},
pages = {213--247},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-1-84628-885-2\_11},
doi = {10.1007/978-1-84628-885-2\_11},
timestamp = {Thu, 13 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/Davidson08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/HaendelNOMMM008,
author = {Melissa A. Haendel and
Fabian Neuhaus and
David Osumi{-}Sutherland and
Paula M. Mabee and
Jos{\'{e}} L. V. Mejino Jr. and
Chris Mungall and
Barry Smith},
editor = {Albert Burger and
Duncan Davidson and
Richard A. Baldock},
title = {{CARO} - The Common Anatomy Reference Ontology},
booktitle = {Anatomy Ontologies for Bioinformatics, Principles and Practice},
series = {Computational Biology},
volume = {6},
pages = {327--349},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-1-84628-885-2\_16},
doi = {10.1007/978-1-84628-885-2\_16},
timestamp = {Mon, 16 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/HaendelNOMMM008.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/IlicRKS08,
author = {Katica Ilic and
Seung Yon Rhee and
Elizabeth A. Kellogg and
Peter F. Stevens},
editor = {Albert Burger and
Duncan Davidson and
Richard A. Baldock},
title = {Plant Structure Ontology {(PSO)} - {A} Morphological and Anatomical
Ontology of Flowering Plants},
booktitle = {Anatomy Ontologies for Bioinformatics, Principles and Practice},
series = {Computational Biology},
volume = {6},
pages = {27--42},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-1-84628-885-2\_2},
doi = {10.1007/978-1-84628-885-2\_2},
timestamp = {Thu, 13 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/IlicRKS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/LambrixT08,
author = {Patrick Lambrix and
He Tan},
editor = {Albert Burger and
Duncan Davidson and
Richard A. Baldock},
title = {Ontology Alignment and Merging},
booktitle = {Anatomy Ontologies for Bioinformatics, Principles and Practice},
series = {Computational Biology},
volume = {6},
pages = {133--149},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-1-84628-885-2\_6},
doi = {10.1007/978-1-84628-885-2\_6},
timestamp = {Mon, 16 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/LambrixT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/MartoneZGMTWFLE08,
author = {Maryann E. Martone and
Ilya Zaslavsky and
Amarnath Gupta and
Asif Memon and
Joshua Tran and
Willy Wong and
Lisa Fong and
Stephen D. Larson and
Mark H. Ellisman},
editor = {Albert Burger and
Duncan Davidson and
Richard A. Baldock},
title = {The Smart Atlas: Spatial and Semantic Strategies for Multiscale Integration
of Brain Data},
booktitle = {Anatomy Ontologies for Bioinformatics, Principles and Practice},
series = {Computational Biology},
volume = {6},
pages = {267--286},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-1-84628-885-2\_13},
doi = {10.1007/978-1-84628-885-2\_13},
timestamp = {Thu, 13 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/MartoneZGMTWFLE08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/Neuhaus008,
author = {Fabian Neuhaus and
Barry Smith},
editor = {Albert Burger and
Duncan Davidson and
Richard A. Baldock},
title = {Modelling Principles and Methodologies - Relations in Anatomical Ontologies},
booktitle = {Anatomy Ontologies for Bioinformatics, Principles and Practice},
series = {Computational Biology},
volume = {6},
pages = {289--306},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-1-84628-885-2\_14},
doi = {10.1007/978-1-84628-885-2\_14},
timestamp = {Thu, 13 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/Neuhaus008.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/Rector08,
author = {Alan L. Rector},
editor = {Albert Burger and
Duncan Davidson and
Richard A. Baldock},
title = {Anatomy for Clinical Terminology},
booktitle = {Anatomy Ontologies for Bioinformatics, Principles and Practice},
series = {Computational Biology},
volume = {6},
pages = {43--57},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-1-84628-885-2\_3},
doi = {10.1007/978-1-84628-885-2\_3},
timestamp = {Thu, 13 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/Rector08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/RosseM08,
author = {Cornelius Rosse and
Jos{\'{e}} L. V. Mejino Jr.},
editor = {Albert Burger and
Duncan Davidson and
Richard A. Baldock},
title = {The Foundational Model of Anatomy Ontology},
booktitle = {Anatomy Ontologies for Bioinformatics, Principles and Practice},
series = {Computational Biology},
volume = {6},
pages = {59--117},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-1-84628-885-2\_4},
doi = {10.1007/978-1-84628-885-2\_4},
timestamp = {Thu, 13 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/RosseM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/SchofieldRG08,
author = {Paul N. Schofield and
Bj{\"{o}}rn Rozell and
Georgios V. Gkoutos},
editor = {Albert Burger and
Duncan Davidson and
Richard A. Baldock},
title = {Towards a Disease Ontology},
booktitle = {Anatomy Ontologies for Bioinformatics, Principles and Practice},
series = {Computational Biology},
volume = {6},
pages = {119--130},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-1-84628-885-2\_5},
doi = {10.1007/978-1-84628-885-2\_5},
timestamp = {Mon, 16 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/SchofieldRG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/WachterADH008,
author = {Thomas W{\"{a}}chter and
Dimitra Alexopoulou and
Heiko Dietze and
J{\"{o}}rg Hakenberg and
Michael Schroeder},
editor = {Albert Burger and
Duncan Davidson and
Richard A. Baldock},
title = {Searching Biomedical Literature with Anatomy Ontologies},
booktitle = {Anatomy Ontologies for Bioinformatics, Principles and Practice},
series = {Computational Biology},
volume = {6},
pages = {177--194},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-1-84628-885-2\_9},
doi = {10.1007/978-1-84628-885-2\_9},
timestamp = {Mon, 16 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/WachterADH008.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:books/sp/08/PP2008,
editor = {Anna R. Panchenko and
Teresa M. Przytycka},
title = {Protein-protein Interactions and Networks: Identification, Computer
Analysis, and Prediction},
series = {Computational Biology},
volume = {9},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-1-84800-125-1},
doi = {10.1007/978-1-84800-125-1},
isbn = {978-1-84800-124-4},
timestamp = {Thu, 28 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/sp/08/PP2008.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:series/cb/6,
editor = {Albert Burger and
Duncan Davidson and
Richard A. Baldock},
title = {Anatomy Ontologies for Bioinformatics, Principles and Practice},
series = {Computational Biology},
volume = {6},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-1-84628-885-2},
doi = {10.1007/978-1-84628-885-2},
isbn = {978-1-84628-884-5},
timestamp = {Thu, 13 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/6.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:series/cb/Ramsden04,
author = {Jeremy J. Ramsden},
title = {Bioinformatics: An Introduction},
series = {Computational Biology},
volume = {3},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-1-4020-2950-9},
doi = {10.1007/978-1-4020-2950-9},
isbn = {978-94-015-7096-1},
timestamp = {Tue, 16 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/Ramsden04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/ArmengolP04,
author = {Eva Armengol and
Enric Plaza},
editor = {Werner Dubitzky and
Francisco Azuaje},
title = {Lazy Learning for Predictive Toxicology based on a Chemical Ontology},
booktitle = {Artificial Intelligence Methods And Tools For Systems Biology},
series = {Computational Biology},
volume = {5},
pages = {1--18},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-1-4020-5811-0\_1},
doi = {10.1007/978-1-4020-5811-0\_1},
timestamp = {Thu, 13 Jun 2019 09:26:46 +0200},
biburl = {https://dblp.org/rec/series/cb/ArmengolP04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/CohenH04,
author = {K. Bretonnel Cohen and
Lawrence Hunter},
editor = {Werner Dubitzky and
Francisco Azuaje},
title = {Natural Language Processing and Systems Biology},
booktitle = {Artificial Intelligence Methods And Tools For Systems Biology},
series = {Computational Biology},
volume = {5},
pages = {147--173},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-1-4020-5811-0\_9},
doi = {10.1007/978-1-4020-5811-0\_9},
timestamp = {Mon, 16 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/CohenH04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/DafasKR004,
author = {Panos Dafas and
Alexander Kozlenkov and
Alan Robinson and
Michael Schroeder},
editor = {Werner Dubitzky and
Francisco Azuaje},
title = {Integrating Gene Expression Data, Protein Interaction Data, and Ontology-Based
Literature Searches},
booktitle = {Artificial Intelligence Methods And Tools For Systems Biology},
series = {Computational Biology},
volume = {5},
pages = {107--127},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-1-4020-5811-0\_7},
doi = {10.1007/978-1-4020-5811-0\_7},
timestamp = {Thu, 13 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/DafasKR004.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/GrasHHZMFMNA04,
author = {Robin Gras and
David Hern{\'{a}}ndez and
Patricia Hernandez and
Nadine Zangger and
Yoan Mescam and
Julien Frey and
Olivier Martin and
Jacques Nicolas and
Ron D. Appel},
editor = {Werner Dubitzky and
Francisco Azuaje},
title = {Cooperative Metaheuristics for Exploring Proteomic Data},
booktitle = {Artificial Intelligence Methods And Tools For Systems Biology},
series = {Computational Biology},
volume = {5},
pages = {87--106},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-1-4020-5811-0\_6},
doi = {10.1007/978-1-4020-5811-0\_6},
timestamp = {Wed, 11 Dec 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/series/cb/GrasHHZMFMNA04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/Lambrix04,
author = {Patrick Lambrix},
editor = {Werner Dubitzky and
Francisco Azuaje},
title = {Ontologies in Bioinformatics and Systems Biology},
booktitle = {Artificial Intelligence Methods And Tools For Systems Biology},
series = {Computational Biology},
volume = {5},
pages = {129--145},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-1-4020-5811-0\_8},
doi = {10.1007/978-1-4020-5811-0\_8},
timestamp = {Mon, 16 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/Lambrix04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/LohSASD04,
author = {Marco Loh and
Miruna Szabo and
Rita Almeida and
Martin Stetter and
Gustavo Deco},
editor = {Werner Dubitzky and
Francisco Azuaje},
title = {Computational Neuroscience for Cognitive Brain Functions},
booktitle = {Artificial Intelligence Methods And Tools For Systems Biology},
series = {Computational Biology},
volume = {5},
pages = {197--215},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-1-4020-5811-0\_11},
doi = {10.1007/978-1-4020-5811-0\_11},
timestamp = {Thu, 13 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/LohSASD04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/MaranS04,
author = {Uko Maran and
Sulev Sild},
editor = {Werner Dubitzky and
Francisco Azuaje},
title = {{QSAR} Modeling of Mutagenicity on Non-Congeneric Sets of Organic
Compounds},
booktitle = {Artificial Intelligence Methods And Tools For Systems Biology},
series = {Computational Biology},
volume = {5},
pages = {19--35},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-1-4020-5811-0\_2},
doi = {10.1007/978-1-4020-5811-0\_2},
timestamp = {Thu, 13 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/MaranS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/McCleanSR04,
author = {Sally I. McClean and
Bryan W. Scotney and
Steve Robinson},
editor = {Werner Dubitzky and
Francisco Azuaje},
title = {Characterizing Gene Expression Time Series using a Hidden Markov Model},
booktitle = {Artificial Intelligence Methods And Tools For Systems Biology},
series = {Computational Biology},
volume = {5},
pages = {37--50},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-1-4020-5811-0\_3},
doi = {10.1007/978-1-4020-5811-0\_3},
timestamp = {Thu, 13 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/McCleanSR04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/OoiT04,
author = {Chia Huey Ooi and
Patrick Tan},
editor = {Werner Dubitzky and
Francisco Azuaje},
title = {Analysis of Large-Scale mRNA Expression Data Sets by Genetic Algorithms},
booktitle = {Artificial Intelligence Methods And Tools For Systems Biology},
series = {Computational Biology},
volume = {5},
pages = {51--66},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-1-4020-5811-0\_4},
doi = {10.1007/978-1-4020-5811-0\_4},
timestamp = {Mon, 16 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/OoiT04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/SomorjaiABBBDDMNPPSZ04,
author = {Raymund L. Somorjai and
Murray E. Alexander and
Richard Baumgartner and
Stephanie Booth and
Christopher Bowman and
Aleksander B. Demko and
Brion Dolenko and
Marina Mandelzweig and
Aleksander E. Nikulin and
Nicolino J. Pizzi and
Erinija Pranckeviciene and
Arthur R. Summers and
Peter Zhilkin},
editor = {Werner Dubitzky and
Francisco Azuaje},
title = {A Data-Driven, Flexible Machine Learning Strategy for the Classification
of Biomedical Data},
booktitle = {Artificial Intelligence Methods And Tools For Systems Biology},
series = {Computational Biology},
volume = {5},
pages = {67--85},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-1-4020-5811-0\_5},
doi = {10.1007/978-1-4020-5811-0\_5},
timestamp = {Mon, 15 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/series/cb/SomorjaiABBBDDMNPPSZ04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/cb/StetterSD04,
author = {Martin Stetter and
Bernd Sch{\"{u}}rmann and
Math{\"{a}}us Dejori},
editor = {Werner Dubitzky and
Francisco Azuaje},
title = {Systems Level Modeling of Gene Regulatory Networks},
booktitle = {Artificial Intelligence Methods And Tools For Systems Biology},
series = {Computational Biology},
volume = {5},
pages = {175--195},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-1-4020-5811-0\_10},
doi = {10.1007/978-1-4020-5811-0\_10},
timestamp = {Thu, 13 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/StetterSD04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:series/cb/5,
editor = {Werner Dubitzky and
Francisco Azuaje},
title = {Artificial Intelligence Methods And Tools For Systems Biology},
series = {Computational Biology},
volume = {5},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-1-4020-5811-0},
doi = {10.1007/978-1-4020-5811-0},
isbn = {978-1-4020-2859-5},
timestamp = {Thu, 13 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/cb/5.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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