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@article{DBLP:journals/tcbb/BarnettOSF24,
author = {Eric J. Barnett and
Daniel G. Onete and
Asif Salekin and
Stephen V. Faraone},
title = {Genomic Machine Learning Meta-regression: Insights on Associations
of Study Features With Reported Model Performance},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {21},
number = {1},
pages = {169--177},
year = {2024},
url = {https://doi.org/10.1109/TCBB.2023.3343808},
doi = {10.1109/TCBB.2023.3343808},
timestamp = {Thu, 29 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/BarnettOSF24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChoudhuriS24,
author = {Souradipto Choudhuri and
Keya Sau},
title = {CodonU: {A} Python Package for Codon Usage Analysis},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {21},
number = {1},
pages = {36--44},
year = {2024},
url = {https://doi.org/10.1109/TCBB.2023.3335823},
doi = {10.1109/TCBB.2023.3335823},
timestamp = {Thu, 29 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/ChoudhuriS24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/CruzCFRD24,
author = {Fernando Cruz and
Jo{\~{a}}o Capela and
Eug{\'{e}}nio C. Ferreira and
Miguel Rocha and
Oscar D{\'{\i}}as},
title = {BioISO: An Objective-Oriented Application for Assisting the Curation
of Genome-Scale Metabolic Models},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {21},
number = {2},
pages = {215--226},
year = {2024},
url = {https://doi.org/10.1109/TCBB.2023.3339972},
doi = {10.1109/TCBB.2023.3339972},
timestamp = {Sat, 04 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/CruzCFRD24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DongLGDZ24,
author = {Shujie Dong and
Yuansheng Liu and
Yongshun Gong and
Xiangjun Dong and
Xiangxiang Zeng},
title = {scCAN: Clustering With Adaptive Neighbor-Based Imputation Method for
Single-Cell RNA-Seq Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {21},
number = {1},
pages = {95--105},
year = {2024},
url = {https://doi.org/10.1109/TCBB.2023.3337231},
doi = {10.1109/TCBB.2023.3337231},
timestamp = {Thu, 29 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/DongLGDZ24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ElZeinLH24,
author = {Yamane El{-}Zein and
Mathieu Lemay and
K{\'{e}}vin Huguenin},
title = {PrivaTree: Collaborative Privacy-Preserving Training of Decision Trees
on Biomedical Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {21},
number = {1},
pages = {1--13},
year = {2024},
url = {https://doi.org/10.1109/TCBB.2023.3286274},
doi = {10.1109/TCBB.2023.3286274},
timestamp = {Sat, 16 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/ElZeinLH24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GuoTLMLGL24,
author = {Rui Guo and
Xu Tian and
Hanhe Lin and
Stephen J. McKenna and
Hong{-}Dong Li and
Fei Guo and
Jin Liu},
title = {Graph-Based Fusion of Imaging, Genetic and Clinical Data for Degenerative
Disease Diagnosis},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {21},
number = {1},
pages = {57--68},
year = {2024},
url = {https://doi.org/10.1109/TCBB.2023.3335369},
doi = {10.1109/TCBB.2023.3335369},
timestamp = {Thu, 29 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/GuoTLMLGL24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HuHCLPCT24,
author = {Zhao{-}Qi Hu and
Yuan{-}Mao Hung and
Li{-}Han Chen and
Liang{-}Chuan Lai and
Min{-}Hsiung Pan and
Eric Y. Chuang and
Mong{-}Hsun Tsai},
title = {{NURECON:} {A} Novel Online System for Determining Nutrition Requirements
Based on Microbial Composition},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {21},
number = {2},
pages = {254--264},
year = {2024},
url = {https://doi.org/10.1109/TCBB.2024.3349572},
doi = {10.1109/TCBB.2024.3349572},
timestamp = {Sat, 04 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HuHCLPCT24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JinZYL24,
author = {Sichen Jin and
Yijia Zhang and
Huimin Yu and
Mingyu Lu},
title = {{SADR:} Self-Supervised Graph Learning With Adaptive Denoising for
Drug Repositioning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {21},
number = {2},
pages = {265--277},
year = {2024},
url = {https://doi.org/10.1109/TCBB.2024.3351079},
doi = {10.1109/TCBB.2024.3351079},
timestamp = {Mon, 06 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JinZYL24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LeuchtenbergerH24,
author = {Alina F. Leuchtenberger and
Arndt von Haeseler},
title = {Learning From an Artificial Neural Network in Phylogenetics},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {21},
number = {2},
pages = {278--288},
year = {2024},
url = {https://doi.org/10.1109/TCBB.2024.3352268},
doi = {10.1109/TCBB.2024.3352268},
timestamp = {Mon, 15 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LeuchtenbergerH24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiJZWZ24,
author = {Tiantian Li and
Haitao Jiang and
Binhai Zhu and
Lusheng Wang and
Daming Zhu},
title = {Flanked Block-Interchange Distance on Strings},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {21},
number = {2},
pages = {301--311},
year = {2024},
url = {https://doi.org/10.1109/TCBB.2024.3351440},
doi = {10.1109/TCBB.2024.3351440},
timestamp = {Sat, 04 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiJZWZ24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiXSJZS24,
author = {Dandan Li and
Zhen Xiao and
Han Sun and
Xingpeng Jiang and
Weizhong Zhao and
Xianjun Shen},
title = {Prediction of Drug-Disease Associations Based on Multi-Kernel Deep
Learning Method in Heterogeneous Graph Embedding},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {21},
number = {1},
pages = {120--128},
year = {2024},
url = {https://doi.org/10.1109/TCBB.2023.3339189},
doi = {10.1109/TCBB.2023.3339189},
timestamp = {Thu, 29 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/LiXSJZS24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuJZY24,
author = {Yuerui Liu and
Yongquan Jiang and
Fan Zhang and
Yan Yang},
title = {A Novel Multi-Scale Graph Neural Network for Metabolic Pathway Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {21},
number = {1},
pages = {178--187},
year = {2024},
url = {https://doi.org/10.1109/TCBB.2023.3345647},
doi = {10.1109/TCBB.2023.3345647},
timestamp = {Thu, 29 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/LiuJZY24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ManuYLS24,
author = {Daniel Manu and
Jingjing Yao and
Wuji Liu and
Xiang Sun},
title = {GraphGANFed: {A} Federated Generative Framework for Graph-Structured
Molecules Towards Efficient Drug Discovery},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {21},
number = {2},
pages = {240--253},
year = {2024},
url = {https://doi.org/10.1109/TCBB.2024.3349990},
doi = {10.1109/TCBB.2024.3349990},
timestamp = {Mon, 15 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ManuYLS24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MorrisRBVTYB24,
author = {Jordan Morris and
Ashur Rafiev and
Graeme M. Bragg and
Mark L. Vousden and
David B. Thomas and
Alex Yakovlev and
Andrew D. Brown},
title = {An Event-Driven Approach to Genotype Imputation on a Custom {RISC-V}
Cluster},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {21},
number = {1},
pages = {26--35},
year = {2024},
url = {https://doi.org/10.1109/TCBB.2023.3328714},
doi = {10.1109/TCBB.2023.3328714},
timestamp = {Thu, 29 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/MorrisRBVTYB24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/NagdaNW24,
author = {Bindi M. Nagda and
Van Minh Nguyen and
Ryan T. White},
title = {promSEMBLE: Hard Pattern Mining and Ensemble Learning for Detecting
{DNA} Promoter Sequences},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {21},
number = {1},
pages = {208--214},
year = {2024},
url = {https://doi.org/10.1109/TCBB.2023.3339597},
doi = {10.1109/TCBB.2023.3339597},
timestamp = {Thu, 29 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/NagdaNW24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/NolandT24,
author = {Jonas Kristiansen N{\o}land and
Steinar Thorvaldsen},
title = {The Exact Stochastic Process of the Haploid Multi-Allelic Wright-Fisher
Mutation Model},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {21},
number = {1},
pages = {69--83},
year = {2024},
url = {https://doi.org/10.1109/TCBB.2023.3336850},
doi = {10.1109/TCBB.2023.3336850},
timestamp = {Thu, 29 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/NolandT24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/RossiGVP24,
author = {Nicol{\`{o}} Rossi and
Nicola Gigante and
Nicola Vitacolonna and
Carla Piazza},
title = {Inferring Markov Chains to Describe Convergent Tumor Evolution With
{CIMICE}},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {21},
number = {1},
pages = {106--119},
year = {2024},
url = {https://doi.org/10.1109/TCBB.2023.3337258},
doi = {10.1109/TCBB.2023.3337258},
timestamp = {Sat, 16 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/RossiGVP24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SinhaPD24,
author = {Rituparna Sinha and
Rajat Kumar Pal and
Rajat K. De},
title = {{ENLIGHTENMENT:} {A} Scalable Annotated Database of Genomics and NGS-Based
Nucleotide Level Profiles},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {21},
number = {1},
pages = {155--168},
year = {2024},
url = {https://doi.org/10.1109/TCBB.2023.3340067},
doi = {10.1109/TCBB.2023.3340067},
timestamp = {Thu, 29 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/SinhaPD24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/TangDZZHCW24,
author = {Wenliang Tang and
Zhaohong Deng and
Hanwen Zhou and
Wei Zhang and
Fuping Hu and
Kup{-}Sze Choi and
Shitong Wang},
title = {{MVDINET:} {A} Novel Multi-Level Enzyme Function Predictor With Multi-View
Deep Interactive Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {21},
number = {1},
pages = {84--94},
year = {2024},
url = {https://doi.org/10.1109/TCBB.2023.3337158},
doi = {10.1109/TCBB.2023.3337158},
timestamp = {Sat, 23 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/TangDZZHCW24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/TuDZZ24,
author = {Chao Tu and
Denghui Du and
Tieyong Zeng and
Yu Zhang},
title = {Deep Multi-Dictionary Learning for Survival Prediction With Multi-Zoom
Histopathological Whole Slide Images},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {21},
number = {1},
pages = {14--25},
year = {2024},
url = {https://doi.org/10.1109/TCBB.2023.3321593},
doi = {10.1109/TCBB.2023.3321593},
timestamp = {Thu, 29 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/TuDZZ24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangHLNWWL24,
author = {Wenjing Wang and
Pengyong Han and
Zhengwei Li and
Ru Nie and
Kangwei Wang and
Lei Wang and
Hongmei Liao},
title = {{LMGATCDA:} Graph Neural Network With Labeling Trick for Predicting
circRNA-Disease Associations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {21},
number = {2},
pages = {289--300},
year = {2024},
url = {https://doi.org/10.1109/TCBB.2024.3355093},
doi = {10.1109/TCBB.2024.3355093},
timestamp = {Sat, 04 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangHLNWWL24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangYSLLZWZ24,
author = {Wei Wang and
MengXue Yu and
Bin Sun and
Juntao Li and
Dong Liu and
Hongjun Zhang and
Xianfang Wang and
Yun Zhou},
title = {{SMGCN:} Multiple Similarity and Multiple Kernel Fusion Based Graph
Convolutional Neural Network for Drug-Target Interactions Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {21},
number = {1},
pages = {143--154},
year = {2024},
url = {https://doi.org/10.1109/TCBB.2023.3339645},
doi = {10.1109/TCBB.2023.3339645},
timestamp = {Sat, 16 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/WangYSLLZWZ24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/XinWQCWW24,
author = {Junchang Xin and
Mingcan Wang and
Luxuan Qu and
Qi Chen and
Weiyiqi Wang and
Zhiqiong Wang},
title = {{BIC-LP:} {A} Hybrid Higher-Order Dynamic Bayesian Network Score Function
for Gene Regulatory Network Reconstruction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {21},
number = {1},
pages = {188--199},
year = {2024},
url = {https://doi.org/10.1109/TCBB.2023.3345317},
doi = {10.1109/TCBB.2023.3345317},
timestamp = {Thu, 29 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/XinWQCWW24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YuWLZLS24,
author = {Shengpeng Yu and
Hong Wang and
Jing Li and
Jun Zhao and
Cheng Liang and
Yanshen Sun},
title = {A Multi-Relational Graph Encoder Network for Fine-Grained Prediction
of MiRNA-Disease Associations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {21},
number = {1},
pages = {45--56},
year = {2024},
url = {https://doi.org/10.1109/TCBB.2023.3335007},
doi = {10.1109/TCBB.2023.3335007},
timestamp = {Thu, 29 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/YuWLZLS24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YuZZJMW24,
author = {Changyong Yu and
Yuhai Zhao and
Chu Zhao and
Jianyu Jin and
Keming Mao and
Guoren Wang},
title = {MiniDBG: {A} Novel and Minimal De Bruijn Graph for Read Mapping},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {21},
number = {1},
pages = {129--142},
year = {2024},
url = {https://doi.org/10.1109/TCBB.2023.3340251},
doi = {10.1109/TCBB.2023.3340251},
timestamp = {Thu, 29 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/YuZZJMW24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZengL24,
author = {Pengcheng Zeng and
Zhixiang Lin},
title = {scICML: Information-Theoretic Co-Clustering-Based Multi-View Learning
for the Integrative Analysis of Single-Cell Multi-Omics Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {21},
number = {1},
pages = {200--207},
year = {2024},
url = {https://doi.org/10.1109/TCBB.2023.3305989},
doi = {10.1109/TCBB.2023.3305989},
timestamp = {Thu, 29 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/ZengL24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangJZZLLZQ24,
author = {Hao Zhang and
Jiao Jiao and
Tianheng Zhao and
Enshuang Zhao and
Lanhui Li and
Guihua Li and
Borui Zhang and
Qing{-}Ming Qin},
title = {{GERWR:} Identifying the Key Pathogenicity- Associated sRNAs of Magnaporthe
Oryzae Infection in Rice Based on Graph Embedding and Random Walk
With Restart},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {21},
number = {2},
pages = {227--239},
year = {2024},
url = {https://doi.org/10.1109/TCBB.2023.3348080},
doi = {10.1109/TCBB.2023.3348080},
timestamp = {Mon, 15 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangJZZLLZQ24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/0001GHS23,
author = {David Schaller and
Manuela Gei{\ss} and
Marc Hellmuth and
Peter F. Stadler},
title = {Best Match Graphs With Binary Trees},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1679--1690},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3143870},
doi = {10.1109/TCBB.2022.3143870},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/0001GHS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/0011LS23,
author = {Hui Yu and
KangKang Li and
Jianyu Shi},
title = {{DGANDDI:} Double Generative Adversarial Networks for Drug-Drug Interaction
Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1854--1863},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3219883},
doi = {10.1109/TCBB.2022.3219883},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/0011LS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/0166SYW0ZZ23,
author = {Wei Wang and
Bin Sun and
MengXue Yu and
ShiYu Wu and
Dong Liu and
Hongjun Zhang and
Yun Zhou},
title = {GraphPLBR: Protein-Ligand Binding Residue Prediction With Deep Graph
Convolution Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2223--2232},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3239983},
doi = {10.1109/TCBB.2023.3239983},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/0166SYW0ZZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AbolmasoumiMM23,
author = {Amir Hossein Abolmasoumi and
Mohammad Mohammadian and
Lamine Mili},
title = {Robust {KALMAN} Filter State Estimation for Gene Regulatory Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1395--1405},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3173969},
doi = {10.1109/TCBB.2022.3173969},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AbolmasoumiMM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AdhikariHN23,
author = {Mainak Adhikari and
Abhishek Hazra and
Sudarshan Nandy},
title = {Deep Transfer Learning for Communicable Disease Detection and Recommendation
in Edge Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2468--2479},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3180393},
doi = {10.1109/TCBB.2022.3180393},
timestamp = {Fri, 18 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AdhikariHN23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AhmedCJP23,
author = {Imran Ahmed and
Abdellah Chehri and
Gwanggil Jeon and
Francesco Piccialli},
title = {Automated Pulmonary Nodule Classification and Detection Using Deep
Learning Architectures},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2445--2456},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3192139},
doi = {10.1109/TCBB.2022.3192139},
timestamp = {Fri, 18 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AhmedCJP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AiYDTG23,
author = {Chengwei Ai and
Hongpeng Yang and
Yijie Ding and
Jijun Tang and
Fei Guo},
title = {Low Rank Matrix Factorization Algorithm Based on Multi-Graph Regularization
for Detecting Drug-Disease Association},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3033--3043},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3274587},
doi = {10.1109/TCBB.2023.3274587},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AiYDTG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AlSabriGCOL23,
author = {Raeed Al{-}Sabri and
Jianliang Gao and
Jiamin Chen and
Moctard Babatounde Oloulade and
Tengfei Lyu},
title = {Multi-View Graph Neural Architecture Search for Biomedical Entity
and Relation Extraction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1221--1233},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3205113},
doi = {10.1109/TCBB.2022.3205113},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AlSabriGCOL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AlatranyKHMA23,
author = {Abbas Saad Alatrany and
Wasiq Khan and
Abir Jaafar Hussain and
Jamila Mustafina and
Dhiya Al{-}Jumeily},
title = {Transfer Learning for Classification of Alzheimer's Disease Based
on Genome Wide Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2700--2711},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3233869},
doi = {10.1109/TCBB.2022.3233869},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AlatranyKHMA23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AlexandrinoBODD23,
author = {Alexsandro Oliveira Alexandrino and
Klairton Lima Brito and
Andre Rodrigues Oliveira and
Ulisses Dias and
Zanoni Dias},
title = {Reversal and Indel Distance With Intergenic Region Information},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1628--1640},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3215615},
doi = {10.1109/TCBB.2022.3215615},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AlexandrinoBODD23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AliSKZKP23,
author = {Sarwan Ali and
Bikram Sahoo and
Muhammad Asad Khan and
Alexander Zelikovsky and
Imdadullah Khan and
Murray Patterson},
title = {Efficient Approximate Kernel Based Spike Sequence Classification},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3376--3388},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3206284},
doi = {10.1109/TCBB.2022.3206284},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/AliSKZKP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AllmanBR23,
author = {Elizabeth S. Allman and
Hector Ba{\~{n}}os and
John A. Rhodes},
title = {Testing Multispecies Coalescent Simulators Using Summary Statistics},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1613--1618},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3177956},
doi = {10.1109/TCBB.2022.3177956},
timestamp = {Mon, 01 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AllmanBR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Altuntas23,
author = {Volkan Altuntas},
title = {Diffusion Alignment Coefficient {(DAC):} {A} Novel Similarity Metric
for Protein-Protein Interaction Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {894--903},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3185406},
doi = {10.1109/TCBB.2022.3185406},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Altuntas23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AnjumNRBR23,
author = {Naser Anjum and
Raian Latif Nabil and
Rakibul Islam Rafi and
Md. Shamsuzzoha Bayzid and
Mohammad Saifur Rahman},
title = {{CD-MAWS:} An Alignment-Free Phylogeny Estimation Method Using Cosine
Distance on Minimal Absent Word Sets},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {196--205},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3136792},
doi = {10.1109/TCBB.2021.3136792},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AnjumNRBR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ArsalanKNNR23,
author = {Muhammad Arsalan and
Tariq Mahmood Khan and
Syed Saud Naqvi and
Mehmood Nawaz and
Imran Razzak},
title = {Prompt Deep Light-Weight Vessel Segmentation Network (PLVS-Net)},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1363--1371},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3211936},
doi = {10.1109/TCBB.2022.3211936},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ArsalanKNNR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AryaMSS23,
author = {Nikhilanand Arya and
Archana Mathur and
Snehanshu Saha and
Sriparna Saha},
title = {Proposal of {SVM} Utility Kernel for Breast Cancer Survival Estimation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1372--1383},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3198879},
doi = {10.1109/TCBB.2022.3198879},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AryaMSS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BaiYWZWJR023,
author = {Jun Bai and
Chuantao Yin and
Zimeng Wu and
Jianfei Zhang and
Yanmeng Wang and
Guanyi Jia and
Wenge Rong and
Zhang Xiong},
title = {Improving Biomedical ReQA With Consistent NLI-Transfer and Post-Whitening},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1864--1875},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3219375},
doi = {10.1109/TCBB.2022.3219375},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BaiYWZWJR023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BaiYZWDRX23,
author = {Jun Bai and
Chuantao Yin and
Jianfei Zhang and
Yanmeng Wang and
Yi Dong and
Wenge Rong and
Zhang Xiong},
title = {Adversarial Knowledge Distillation Based Biomedical Factoid Question
Answering},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {106--118},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3161032},
doi = {10.1109/TCBB.2022.3161032},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BaiYZWDRX23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BaileySSDK23,
author = {Richard Bailey and
Aisharjya Sarkar and
Aaditya Singh and
Alin Dobra and
Tamer Kahveci},
title = {Optimal Supervised Reduction of High Dimensional Transcription Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3093--3105},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3280557},
doi = {10.1109/TCBB.2023.3280557},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BaileySSDK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BerberEK23,
author = {Ibrahim Berber and
Cesim Erten and
Hilal Kazan},
title = {Predator: Predicting the Impact of Cancer Somatic Mutations on Protein-Protein
Interactions},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3163--3172},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3262119},
doi = {10.1109/TCBB.2023.3262119},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BerberEK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Bhattacharyya23,
author = {Ramkishore Bhattacharyya},
title = {Bidirectional Association Discovery Leads to Precise Identification
of Lung Cancer Biomarkers and Genome Taxa Class},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1783--1794},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3215630},
doi = {10.1109/TCBB.2022.3215630},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Bhattacharyya23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BianCCYCW23,
author = {Yuexin Bian and
Jintai Chen and
Xiaojun Chen and
Xiaoxian Yang and
Danny Z. Chen and
Jian Wu},
title = {Identifying Electrocardiogram Abnormalities Using a Handcrafted-Rule-Enhanced
Neural Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2434--2444},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3140785},
doi = {10.1109/TCBB.2022.3140785},
timestamp = {Fri, 18 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BianCCYCW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BohnsackKAV23,
author = {Katrin Sophie Bohnsack and
Marika Kaden and
Julia Abel and
Thomas Villmann},
title = {Alignment-Free Sequence Comparison: {A} Systematic Survey From a Machine
Learning Perspective},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {119--135},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3140873},
doi = {10.1109/TCBB.2022.3140873},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BohnsackKAV23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BonginiMPB23,
author = {Pietro Bongini and
Elisa Messori and
Niccol{\`{o}} Pancino and
Monica Bianchini},
title = {A Deep Learning Approach to the Prediction of Drug Side-Effects on
Molecular Graphs},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3681--3690},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3311015},
doi = {10.1109/TCBB.2023.3311015},
timestamp = {Fri, 26 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/BonginiMPB23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BonginiSBDPL23,
author = {Pietro Bongini and
Franco Scarselli and
Monica Bianchini and
Giovanna Maria Dimitri and
Niccol{\`{o}} Pancino and
Pietro Li{\'{o}}},
title = {Modular Multi-Source Prediction of Drug Side-Effects With DruGNN},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1211--1220},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3175362},
doi = {10.1109/TCBB.2022.3175362},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BonginiSBDPL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BritoAODD23,
author = {Klairton Lima Brito and
Alexsandro Oliveira Alexandrino and
Andre Rodrigues Oliveira and
Ulisses Dias and
Zanoni Dias},
title = {Genome Rearrangement Distance With a Flexible Intergenic Regions Aspect},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1641--1653},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3165443},
doi = {10.1109/TCBB.2022.3165443},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BritoAODD23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/CaiLSW23,
author = {Zhipeng Cai and
Min Li and
Pavel Skums and
Yanjie Wei},
title = {Guest Editors' Introduction to the Special Section on Bioinformatics
Research and Applications},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3329--3331},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3325032},
doi = {10.1109/TCBB.2023.3325032},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/CaiLSW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/CaiXYLGW23,
author = {Wentian Cai and
Linsen Xie and
Weixian Yang and
Yijiang Li and
Ying Gao and
Tingting Wang},
title = {DFTNet: Dual-Path Feature Transfer Network for Weakly Supervised Medical
Image Segmentation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2530--2540},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3198284},
doi = {10.1109/TCBB.2022.3198284},
timestamp = {Wed, 08 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/CaiXYLGW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/CaoPLMOA23,
author = {Yu Cao and
Wenya Pi and
Chun{-}Yu Lin and
Ulrike M{\"{u}}nzner and
Masahiro Ohtomo and
Tatsuya Akutsu},
title = {Common Attractors in Multiple Boolean Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2862--2873},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3268795},
doi = {10.1109/TCBB.2023.3268795},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/CaoPLMOA23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/CaoZWGZ23,
author = {Qingqing Cao and
Jianping Zhao and
Hai{-}Yun Wang and
Qi Guan and
Chun{-}Hou Zheng},
title = {An Integrated Method Based on Wasserstein Distance and Graph for Cancer
Subtype Discovery},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3499--3510},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3293472},
doi = {10.1109/TCBB.2023.3293472},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/CaoZWGZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/CaoZZJL23,
author = {Yahui Cao and
Tao Zhang and
Xin Zhao and
Xue Jia and
Bingzhi Li},
title = {MooSeeker: {A} Metabolic Pathway Design Tool Based on Multi-Objective
Optimization Algorithm},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3609--3622},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3307363},
doi = {10.1109/TCBB.2023.3307363},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/CaoZZJL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/CastiglioneNOPT23,
author = {Filippo Castiglione and
Christine Nardini and
Elia Onofri and
Marco Pedicini and
Paolo Tieri},
title = {Explainable Drug Repurposing Approach From Biased Random Walks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1009--1019},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3191392},
doi = {10.1109/TCBB.2022.3191392},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/CastiglioneNOPT23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChaiJSZZYL23,
author = {Zhaoying Chai and
Han Jin and
Shenghui Shi and
Siyan Zhan and
Lin Zhuo and
Yu Yang and
Qi Lian},
title = {Noise Reduction Learning Based on XLNet-CRF for Biomedical Named Entity
Recognition},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {595--605},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3157630},
doi = {10.1109/TCBB.2022.3157630},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChaiJSZZYL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Chen0C023,
author = {Shutao Chen and
Lin Zhang and
Xiangzhi Chen and
Hui Liu},
title = {{FGFICA:} Independent Component Analysis of Fusion Genomic Features
for Mining Epi-Transcriptome Profiling Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1842--1853},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3220552},
doi = {10.1109/TCBB.2022.3220552},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Chen0C023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Chen0L0Y23,
author = {Peng Chen and
Jian Wang and
Hongfei Lin and
Yijia Zhang and
Zhihao Yang},
title = {Knowledge Adaptive Multi-Way Matching Network for Biomedical Named
Entity Recognition via Machine Reading Comprehension},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2101--2111},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3233856},
doi = {10.1109/TCBB.2022.3233856},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Chen0L0Y23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenGLHYH23,
author = {Nan Chen and
Man Guo and
Yongchao Li and
Xiping Hu and
Zhijun Yao and
Bin Hu},
title = {Estimation of Discriminative Multimodal Brain Network Connectivity
Using Message-Passing-Based Nonlinear Network Fusion},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2398--2406},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3137498},
doi = {10.1109/TCBB.2021.3137498},
timestamp = {Fri, 18 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChenGLHYH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenGLMH23,
author = {Jiamin Chen and
Jianliang Gao and
Tengfei Lyu and
Oloulade Babatounde Moctard and
Xiaohua Hu},
title = {AutoMSR: Auto Molecular Structure Representation Learning for Multi-label
Metabolic Pathway Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3430--3439},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3198119},
doi = {10.1109/TCBB.2022.3198119},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/ChenGLMH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenHXAC23,
author = {Jiazhou Chen and
Guoqiang Han and
Aodan Xu and
Tatsuya Akutsu and
Hongmin Cai},
title = {Identifying miRNA-Gene Common and Specific Regulatory Modules for
Cancer Subtyping by a High-Order Graph Matching Model},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {421--431},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3161635},
doi = {10.1109/TCBB.2022.3161635},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChenHXAC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenLHMZGZX23,
author = {Zihao Chen and
Nan Liu and
Yang Huang and
Xiaoping Min and
Xiangxiang Zeng and
Shengxiang Ge and
Jun Zhang and
Ning{-}Shao Xia},
title = {PointDE: Protein Docking Evaluation Using 3D Point Cloud Neural Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3128--3138},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3279019},
doi = {10.1109/TCBB.2023.3279019},
timestamp = {Sat, 28 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChenLHMZGZX23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenLYR23,
author = {Hegang Chen and
Yuyin Lu and
Yuedong Yang and
Yanghui Rao},
title = {A Drug Combination Prediction Framework Based on Graph Convolutional
Network and Heterogeneous Information},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1917--1925},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3224734},
doi = {10.1109/TCBB.2022.3224734},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChenLYR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenLZBZ23,
author = {Shouzhi Chen and
Yanhong Liao and
Jianping Zhao and
Yannan Bin and
Chun{-}Hou Zheng},
title = {{PACVP:} Prediction of Anti-Coronavirus Peptides Using a Stacking
Learning Strategy With Effective Feature Representation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3106--3116},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3238370},
doi = {10.1109/TCBB.2023.3238370},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChenLZBZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenRTC23,
author = {Jiazhou Chen and
Wentao Rong and
Guihua Tao and
Hongmin Cai},
title = {Similarity Fusion via Exploiting High Order Proximity for Cancer Subtyping},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {658--667},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3139597},
doi = {10.1109/TCBB.2021.3139597},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChenRTC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenSWWM23,
author = {Qi{-}Qi Chen and
Zhao{-}Hui Sun and
Chuan{-}Feng Wei and
Edmond Qi Wu and
Dong Ming},
title = {Semi-Supervised 3D Medical Image Segmentation Based on Dual-Task Consistent
Joint Learning and Task-Level Regularization},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2457--2467},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3144428},
doi = {10.1109/TCBB.2022.3144428},
timestamp = {Fri, 18 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChenSWWM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenSZWG23,
author = {Peng Chen and
Huimin Shen and
Youzhi Zhang and
Bing Wang and
Pengying Gu},
title = {SGNet: Sequence-Based Convolution and Ligand Graph Network for Protein
Binding Affinity Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3257--3266},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3262821},
doi = {10.1109/TCBB.2023.3262821},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChenSZWG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenWFY23,
author = {Cheng{-}Bang Chen and
Yujie Wang and
Xuanya Fu and
Hui Yang},
title = {Recurrence Network Analysis of Histopathological Images for the Detection
of Invasive Ductal Carcinoma in Breast Cancer},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3234--3244},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3282798},
doi = {10.1109/TCBB.2023.3282798},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChenWFY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenWPXZWQL23,
author = {Taoning Chen and
Tingfang Wu and
Deng Pan and
Jinxing Xie and
Jin Zhi and
Xuejiao Wang and
Lijun Quan and
Qiang Lyu},
title = {TransRNAm: Identifying Twelve Types of {RNA} Modifications by an Interpretable
Multi-Label Deep Learning Model Based on Transformer},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3623--3634},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3307419},
doi = {10.1109/TCBB.2023.3307419},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/ChenWPXZWQL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenZCJLC23,
author = {Jiatao Chen and
Liang Zhang and
Ke Cheng and
Bo Jin and
Xinjiang Lu and
Chao Che},
title = {Predicting Drug-Target Interaction Via Self-Supervised Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2781--2789},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3153963},
doi = {10.1109/TCBB.2022.3153963},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChenZCJLC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenZZNC23,
author = {Cheng Chen and
Yuguo Zha and
Daming Zhu and
Kang Ning and
Xuefeng Cui},
title = {ContactLib-ATT: {A} Structure-Based Search Engine for Homologous Proteins},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3421--3429},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3197802},
doi = {10.1109/TCBB.2022.3197802},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChenZZNC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChengYJQ23,
author = {Xiaoqing Cheng and
Chang Yan and
Hao Jiang and
Yushan Qiu},
title = {scHOIS: Determining Cell Heterogeneity Through Hierarchical Clustering
Based on Optimal Imputation Strategy},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1431--1444},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3203592},
doi = {10.1109/TCBB.2022.3203592},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChengYJQ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChengZWSXS23,
author = {Enhao Cheng and
Jun Zhao and
Hong Wang and
Shuguang Song and
Shuxian Xiong and
Yanshen Sun},
title = {Dual Network Contrastive Learning for Predicting Microbe-Disease Associations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3469--3481},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3228617},
doi = {10.1109/TCBB.2022.3228617},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/ChengZWSXS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChuKLZZ23,
author = {He{-}Ming Chu and
Xiang{-}Zhen Kong and
Jin{-}Xing Liu and
Chun{-}Hou Zheng and
Han Zhang},
title = {A New Binary Biclustering Algorithm Based on Weight Adjacency Difference
Matrix for Analyzing Gene Expression Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2802--2809},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3283801},
doi = {10.1109/TCBB.2023.3283801},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChuKLZZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChuNHNN23,
author = {Thang Chu and
Thuy Trang Nguyen and
Bui Duong Hai and
Quang Huy Nguyen and
Tuan Nguyen},
title = {Graph Transformer for Drug Response Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1065--1072},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3206888},
doi = {10.1109/TCBB.2022.3206888},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChuNHNN23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChunikhinaLKYMM23,
author = {Evgenia Chunikhina and
Paul Logan and
Yevgeniy Kovchegov and
Anatoly Yambartsev and
Debashis Mondal and
Andrey Morgun},
title = {The {C-SHIFT} Algorithm for Normalizing Covariances},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {720--730},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3151840},
doi = {10.1109/TCBB.2022.3151840},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChunikhinaLKYMM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Dang0OML0X23,
author = {Qi Dang and
Yong Liang and
Dong Ouyang and
Rui Miao and
Caijin Ling and
Xiao{-}Ying Liu and
Shengli Xie},
title = {Improved Computational Drug-Repositioning by Self-Paced Non-Negative
Matrix Tri-Factorization},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1953--1962},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3225300},
doi = {10.1109/TCBB.2022.3225300},
timestamp = {Wed, 20 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Dang0OML0X23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DasSM23,
author = {Pradeep Kumar Das and
Biswajeet Sahoo and
Sukadev Meher},
title = {An Efficient Detection and Classification of Acute Leukemia Using
Transfer Learning and Orthogonal Softmax Layer-Based Model},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1817--1828},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3218590},
doi = {10.1109/TCBB.2022.3218590},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DasSM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DasTAPY23,
author = {Pranab Das and
Yogita Thakran and
S. R. Ngamwal Anal and
Vipin Pal and
Anju Yadav},
title = {{BRMCF:} Binary Relevance and {MLSMOTE} Based Computational Framework
to Predict Drug Functions From Chemical and Biological Properties
of Drugs},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1761--1773},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3215645},
doi = {10.1109/TCBB.2022.3215645},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DasTAPY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DhanukaST23,
author = {Richa Dhanuka and
Jyoti Prakash Singh and
Anushree Tripathi},
title = {A Comprehensive Survey of Deep Learning Techniques in Protein Function
Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2291--2301},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3247634},
doi = {10.1109/TCBB.2023.3247634},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DhanukaST23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DharejoZDZDKQ23,
author = {Fayaz Ali Dharejo and
Muhammad Zawish and
Farah Deeba and
Yuanchun Zhou and
Kapal Dev and
Sunder Ali Khowaja and
Nawab Muhammad Faseeh Qureshi},
title = {Multimodal-Boost: Multimodal Medical Image Super-Resolution Using
Multi-Attention Network With Wavelet Transform},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2420--2433},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3191387},
doi = {10.1109/TCBB.2022.3191387},
timestamp = {Fri, 18 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DharejoZDZDKQ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DingHTZG23,
author = {Yijie Ding and
Wenying He and
Jijun Tang and
Quan Zou and
Fei Guo},
title = {Laplacian Regularized Sparse Representation Based Classifier for Identifying
{DNA} N4-Methylcytosine Sites via {\textdollar}L{\_}\{2,1/2\}{\textdollar}L2,1/2-Matrix
Norm},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {500--511},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3133309},
doi = {10.1109/TCBB.2021.3133309},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DingHTZG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DingLLW23,
author = {Yulian Ding and
Xiujuan Lei and
Bo Liao and
Fang{-}Xiang Wu},
title = {Biomarker Identification via a Factorization Machine-Based Neural
Network With Binary Pairwise Encoding},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2136--2146},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3235299},
doi = {10.1109/TCBB.2023.3235299},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DingLLW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DingQZGCDS23,
author = {Yi Ding and
Xue Qin and
Mingfeng Zhang and
Ji Geng and
Dajiang Chen and
Fuhu Deng and
Chunhe Song},
title = {RLSegNet: An Medical Image Segmentation Network Based on Reinforcement
Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2565--2576},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3195705},
doi = {10.1109/TCBB.2022.3195705},
timestamp = {Fri, 18 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DingQZGCDS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DingYMC23,
author = {Xiaojian Ding and
Fan Yang and
Fumin Ma and
Shilin Chen},
title = {A Unified Multi-Class Feature Selection Framework for Microarray Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3725--3736},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3314432},
doi = {10.1109/TCBB.2023.3314432},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/DingYMC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DongCVLQ23,
author = {Xishuang Dong and
Shanta Chowdhury and
Uboho Victor and
Xiangfang Li and
Lijun Qian},
title = {Semi-Supervised Deep Learning for Cell Type Identification From Single-Cell
Transcriptomic Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1492--1505},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3173587},
doi = {10.1109/TCBB.2022.3173587},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DongCVLQ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DuH0WL23,
author = {Linlin Du and
Rui Han and
Bo Liu and
Yadong Wang and
Junyi Li},
title = {ScCCL: Single-Cell Data Clustering Based on Self-Supervised Contrastive
Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2233--2241},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3241129},
doi = {10.1109/TCBB.2023.3241129},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DuH0WL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DuH23,
author = {Xiuquan Du and
Jiajia Hu},
title = {Deep Multi-Label Joint Learning for {RNA} and DNA-Binding Proteins
Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {307--320},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3150280},
doi = {10.1109/TCBB.2022.3150280},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DuH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DuHUL23,
author = {Zhihua Du and
Tianyou Huang and
Vladimir N. Uversky and
Jianqiang Li},
title = {Predicting {TF} Proteins by Incorporating Evolution Information Through
{PSSM}},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1319--1326},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3199758},
doi = {10.1109/TCBB.2022.3199758},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DuHUL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DuYLZJ23,
author = {Yongping Du and
Jingya Yan and
Yuxuan Lu and
Yiliang Zhao and
Xingnan Jin},
title = {Improving Biomedical Question Answering by Data Augmentation and Model
Weighting},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1114--1124},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3171388},
doi = {10.1109/TCBB.2022.3171388},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DuYLZJ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/FanSP23,
author = {Yongxian Fan and
Guicong Sun and
Xiaoyong Pan},
title = {ELMo4m6A: {A} Contextual Language Embedding-Based Predictor for Detecting
{RNA} N6-Methyladenosine Sites},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {944--954},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3173323},
doi = {10.1109/TCBB.2022.3173323},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/FanSP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/FengQT23,
author = {Yuhao Feng and
Lei Qi and
Weidong Tian},
title = {PhenoBERT: {A} Combined Deep Learning Method for Automated Recognition
of Human Phenotype Ontology},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1269--1277},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3170301},
doi = {10.1109/TCBB.2022.3170301},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/FengQT23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Fernandez-Fraga23,
author = {Alejandro Fern{\'{a}}ndez{-}Fraga and
Jorge Gonz{\'{a}}lez{-}Dom{\'{\i}}nguez and
Juan Touri{\~{n}}o},
title = {ParRADMeth: Identification of Differentially Methylated Regions on
Multicore Clusters},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2041--2049},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3230473},
doi = {10.1109/TCBB.2022.3230473},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Fernandez-Fraga23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/FreireLPS23,
author = {Borja Freire and
Susana Ladra and
Jos{\'{e}} R. Param{\'{a}} and
Leena Salmela},
title = {ViQUF: De Novo Viral Quasispecies Reconstruction Using Unitig-Based
Flow Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1550--1562},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3190282},
doi = {10.1109/TCBB.2022.3190282},
timestamp = {Mon, 01 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/FreireLPS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/FuZNZ23,
author = {Haitao Fu and
Cecheng Zhao and
Xiaohui Niu and
Wen Zhang},
title = {{DRLM:} {A} Robust Drug Representation Learning Method and its Applications},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3451--3460},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3213979},
doi = {10.1109/TCBB.2022.3213979},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/FuZNZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/FurtneyBK23,
author = {Isaac Furtney and
Ray M. Bradley and
Mansur R. Kabuka},
title = {Patient Graph Deep Learning to Predict Breast Cancer Molecular Subtype},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3117--3127},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3290394},
doi = {10.1109/TCBB.2023.3290394},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/FurtneyBK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GaoTXZW23,
author = {Zhen Gao and
Jin Tang and
Junfeng Xia and
Chun{-}Hou Zheng and
Pi{-}Jing Wei},
title = {{CNNGRN:} {A} Convolutional Neural Network-Based Method for Gene Regulatory
Network Inference From Bulk Time-Series Expression Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2853--2861},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3282212},
doi = {10.1109/TCBB.2023.3282212},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GaoTXZW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GaoWHLM23,
author = {Xiaowei Gao and
Yan Wang and
Weimin Hou and
Zaiyi Liu and
Xiaoke Ma},
title = {Multi-View Clustering for Integration of Gene Expression and Methylation
Data With Tensor Decomposition and Self-Representation Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2050--2063},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3229678},
doi = {10.1109/TCBB.2022.3229678},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GaoWHLM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GaoZB23,
author = {Honghao Gao and
Zijian Zhang and
Ram{\'{o}}n J. Dur{\'{a}}n Barroso},
title = {Guest Editorial Special Issue on Multi-Modal Biomedical Computing-Deep
Transfer Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2363--2366},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3284603},
doi = {10.1109/TCBB.2023.3284603},
timestamp = {Thu, 31 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GaoZB23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GargS23,
author = {Shankey Garg and
Pradeep Singh},
title = {Transfer Learning Based Lightweight Ensemble Model for Imbalanced
Breast Cancer Classification},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1529--1539},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3174091},
doi = {10.1109/TCBB.2022.3174091},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GargS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GhasemiRK23,
author = {Mahdieh Ghasemi and
Maseud Rahgozar and
Kaveh Kavousi},
title = {Complex Disease Genes Identification Using a Heterogeneous Network
Embedding Approach},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {875--882},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3175598},
doi = {10.1109/TCBB.2022.3175598},
timestamp = {Sun, 30 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GhasemiRK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GongJSB23,
author = {Tiansu Gong and
Fusong Ju and
Shiwei Sun and
Dongbo Bu},
title = {SASA-Net: {A} Spatial-Aware Self-Attention Mechanism for Building
Protein 3D Structure Directly From Inter- Residue Distances},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3482--3488},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3240456},
doi = {10.1109/TCBB.2023.3240456},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/GongJSB23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GongLFLWLC23,
author = {Yinyin Gong and
Rui Li and
Bin Fu and
Yan Liu and
Jilong Wang and
Renfa Li and
Danny Z. Chen},
title = {A {CNN-LSTM} Ensemble Model for Predicting Protein-Protein Interaction
Binding Sites},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3588--3599},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3306948},
doi = {10.1109/TCBB.2023.3306948},
timestamp = {Mon, 29 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/GongLFLWLC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GonzalezCrespoGPFP23,
author = {Isabel Gonz{\'{a}}lez{-}Crespo and
Antonio G{\'{o}}mez{-}Caama{\~{n}}o and
{\'{O}}scar L{\'{o}}pez Pouso and
John D. Fenwick and
Juan Pardo{-}Montero},
title = {A Biomathematical Model of Tumor Response to Radioimmunotherapy With
{\(\alpha\)}PDL1 and {\(\alpha\)}CTLA4},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {808--821},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3174454},
doi = {10.1109/TCBB.2022.3174454},
timestamp = {Wed, 17 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GonzalezCrespoGPFP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GormezA23,
author = {Yasin G{\"{o}}rmez and
Zafer Aydin},
title = {IGPRED-MultiTask: {A} Deep Learning Model to Predict Protein Secondary
Structure, Torsion Angles and Solvent Accessibility},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1104--1113},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3191395},
doi = {10.1109/TCBB.2022.3191395},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GormezA23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GuanAXLW23,
author = {Yuxia Guan and
Ying An and
Jingrui Xu and
Ning Liu and
Jianxin Wang},
title = {HA-ResNet: Residual Neural Network With Hidden Attention for {ECG}
Arrhythmia Detection Using Two-Dimensional Signal},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3389--3398},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3198998},
doi = {10.1109/TCBB.2022.3198998},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/GuanAXLW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GuanQJJDW23,
author = {Shixuan Guan and
Yuqing Qian and
Tengsheng Jiang and
Min Jiang and
Yijie Ding and
Hongjie Wu},
title = {{MV-H-RKM:} {A} Multiple View-Based Hypergraph Regularized Restricted
Kernel Machine for Predicting DNA-Binding Proteins},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1246--1256},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3183191},
doi = {10.1109/TCBB.2022.3183191},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GuanQJJDW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GuanZ23,
author = {Xiaoyu Guan and
Daoqiang Zhang},
title = {{T-MGCL:} Molecule Graph Contrastive Learning Based on Transformer
for Molecular Property Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3851--3862},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3326145},
doi = {10.1109/TCBB.2023.3326145},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/GuanZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GuanZWD23,
author = {Shixuan Guan and
Quan Zou and
Hongjie Wu and
Yijie Ding},
title = {Protein-DNA Binding Residues Prediction Using a Deep Learning Model
With Hierarchical Feature Extraction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2619--2628},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3190933},
doi = {10.1109/TCBB.2022.3190933},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GuanZWD23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HaP23,
author = {Jihwan Ha and
Sanghyun Park},
title = {{NCMD:} Node2vec-Based Neural Collaborative Filtering for Predicting
MiRNA-Disease Association},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1257--1268},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3191972},
doi = {10.1109/TCBB.2022.3191972},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HaP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HasanMS23,
author = {Md. Al Mehedi Hasan and
Md. Maniruzzaman and
Jungpil Shin},
title = {Gene Expression and Metadata Based Identification of Key Genes for
Hepatocellular Carcinoma Using Machine Learning and Statistical Models},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3786--3799},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3322753},
doi = {10.1109/TCBB.2023.3322753},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/HasanMS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HayamizuM23,
author = {Momoko Hayamizu and
Kazuhisa Makino},
title = {Ranking Top-{\textdollar}k{\textdollar} Trees in Tree-Based Phylogenetic
Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2349--2355},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3229827},
doi = {10.1109/TCBB.2022.3229827},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HayamizuM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HeCT023,
author = {Yezi He and
Xiangtao Chen and
Nguyen Hoang Tu and
Jiawei Luo},
title = {Deep Multi-Constraint Soft Clustering Analysis for Single-Cell RNA-Seq
Data via Zero-Inflated Autoencoder Embedding},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2254--2265},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3240253},
doi = {10.1109/TCBB.2023.3240253},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HeCT023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HeZWCCGH23,
author = {Ying He and
Qinhu Zhang and
Siguo Wang and
Zhanheng Chen and
Zhen Cui and
Zhen{-}Hao Guo and
De{-}Shuang Huang},
title = {Predicting the Sequence Specificities of DNA-Binding Proteins by {DNA}
Fine-Tuned Language Model With Decaying Learning Rates},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {616--624},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3165592},
doi = {10.1109/TCBB.2022.3165592},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HeZWCCGH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HerreraRomeroASVG23,
author = {Bryan Herrera{-}Romero and
Diego Almeida{-}Gal{\'{a}}rraga and
Graciela M. Salum and
Fernando Villalba{-}Meneses and
Marco Esteban Gudi{\~{n}}o{-}Gomezjurado},
title = {GUSignal: An Informatics Tool to Analyze Glucuronidase Gene Expression
in Arabidopsis Thaliana Roots},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1073--1080},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3190427},
doi = {10.1109/TCBB.2022.3190427},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HerreraRomeroASVG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HuaSFWKY23,
author = {Yang Hua and
Xiaoning Song and
Zhen{-}Hua Feng and
Xiaojun Wu and
Josef Kittler and
Dong{-}Jun Yu},
title = {CPInformer for Efficient and Robust Compound-Protein Interaction Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {285--296},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3144008},
doi = {10.1109/TCBB.2022.3144008},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HuaSFWKY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HuangBZLZ23,
author = {Yiran Huang and
Yongjin Bin and
Pingfan Zeng and
Wei Lan and
Cheng Zhong},
title = {NetPro: Neighborhood Interaction-Based Drug Repositioning via Label
Propagation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2159--2169},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3234331},
doi = {10.1109/TCBB.2023.3234331},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HuangBZLZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HuangSZHL23,
author = {Xin Huang and
Benzhe Su and
Chenbo Zhu and
Xinyu He and
Xiaohui Lin},
title = {Dynamic Network Construction for Identifying Early Warning Signals
Based On a Data-Driven Approach: Early Diagnosis Biomarker Discovery
for Gastric Cancer},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {923--931},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3176319},
doi = {10.1109/TCBB.2022.3176319},
timestamp = {Sun, 21 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HuangSZHL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HuangTZHD23,
author = {Weixian Huang and
Kaiwen Tan and
Ziye Zhang and
Jinlong Hu and
Shoubin Dong},
title = {A Review of Fusion Methods for Omics and Imaging Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {74--93},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3143900},
doi = {10.1109/TCBB.2022.3143900},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HuangTZHD23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HuangWLZ23,
author = {Yiran Huang and
Zhihong Wu and
Wei Lan and
Cheng Zhong},
title = {Predicting Disease-Associated N7-Methylguanosine (m\({}^{\mbox{7}}\)G)
Sites via Random Walk on Heterogeneous Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3173--3181},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3284505},
doi = {10.1109/TCBB.2023.3284505},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HuangWLZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HuangWYWG23,
author = {Zimo Huang and
Jun Wang and
Zhongmin Yan and
Lin Wan and
Maozu Guo},
title = {Differential Gene Expression Prediction by Ensemble Deep Networks
on Histone Modification Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {340--351},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3139634},
doi = {10.1109/TCBB.2021.3139634},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HuangWYWG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HuangWZWZ23,
author = {Chenxi Huang and
Wei Wang and
Xin Zhang and
Shui{-}Hua Wang and
Yudong Zhang},
title = {Tuberculosis Diagnosis Using Deep Transferred EfficientNet},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2639--2646},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3199572},
doi = {10.1109/TCBB.2022.3199572},
timestamp = {Fri, 02 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/HuangWZWZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Inzamam-Ul-Hossain23,
author = {Md. Inzamam{-}Ul{-}Hossain and
Md. Rafiqul Islam},
title = {Identification of Essential Protein Using Chemical Reaction Optimization
and Machine Learning Technique},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2122--2135},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3233473},
doi = {10.1109/TCBB.2022.3233473},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Inzamam-Ul-Hossain23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/IravaniC23,
author = {Sahar Iravani and
Tim O. F. Conrad},
title = {An Interpretable Deep Learning Approach for Biomarker Detection in
{LC-MS} Proteomics Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {151--161},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3141656},
doi = {10.1109/TCBB.2022.3141656},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/IravaniC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/IslamKISK23,
author = {Tanzila Islam and
Chyon Hae Kim and
Hiroyoshi Iwata and
Hiroyuki Shimono and
Akio Kimura},
title = {DeepCGP: {A} Deep Learning Method to Compress Genome-Wide Polymorphisms
for Predicting Phenotype of Rice},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2078--2088},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3231466},
doi = {10.1109/TCBB.2022.3231466},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/IslamKISK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JainG23,
author = {Aditi Jain and
Arvind Kumar Gupta},
title = {Modeling mRNA Translation With Ribosome Abortions},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1600--1605},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3203171},
doi = {10.1109/TCBB.2022.3203171},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JainG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JamaliKW23,
author = {Ali Akbar Jamali and
Anthony J. Kusalik and
Fang{-}Xiang Wu},
title = {{NMTF-DTI:} {A} Nonnegative Matrix Tri-factorization Approach With
Multiple Kernel Fusion for Drug-Target Interaction Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {586--594},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3135978},
doi = {10.1109/TCBB.2021.3135978},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JamaliKW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JeeKC23,
author = {Dong Jun Jee and
Yixin Kong and
Hyonho Chun},
title = {Deep Nonnegative Matrix Factorization Using a Variational Autoencoder
With Application to Single-Cell {RNA} Sequencing Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {883--893},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3172723},
doi = {10.1109/TCBB.2022.3172723},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JeeKC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JeonBKK23,
author = {Hajin Jeon and
Jeongmin Bae and
Hyerin Kim and
Min{-}Soo Kim},
title = {VPrimer: {A} Method of Designing and Updating Primer and Probe With
High Variant Coverage for {RNA} Virus Detection},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {775--784},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3138145},
doi = {10.1109/TCBB.2021.3138145},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JeonBKK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JhaS23,
author = {Kanchan Jha and
Sriparna Saha},
title = {Analyzing Effect of Multi-Modality in Predicting Protein-Protein Interactions},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {162--173},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3157531},
doi = {10.1109/TCBB.2022.3157531},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JhaS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JhaSK23,
author = {Kanchan Jha and
Sriparna Saha and
Sourav Karmakar},
title = {Prediction of Protein-Protein Interactions Using Vision Transformer
and Language Model},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3215--3225},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3248797},
doi = {10.1109/TCBB.2023.3248797},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JhaSK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JiYWQZ23,
author = {Cunmei Ji and
Ning Yu and
Yu{-}Tian Wang and
Rong Qi and
Chun{-}Hou Zheng},
title = {An End-to-End Deep Hybrid Autoencoder Based Method for Single-Cell
RNA-Seq Data Analysis},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3889--3900},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3328029},
doi = {10.1109/TCBB.2023.3328029},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/JiYWQZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JiaMCY23,
author = {Baoli Jia and
Qingfang Meng and
Yuehui Chen and
Hongri Yang},
title = {Prediction of Membrane Protein Amphiphilic Helix Based on Horizontal
Visibility Graph and Graph Convolution Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3567--3574},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3305493},
doi = {10.1109/TCBB.2023.3305493},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/JiaMCY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JiangL023,
author = {Changkun Jiang and
Weipeng Lv and
Jianqiang Li},
title = {Protein-Protein Interaction Sites Prediction Using Batch Normalization
Based CNNs and Oversampling Method Borderline-SMOTE},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2190--2199},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3238001},
doi = {10.1109/TCBB.2023.3238001},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JiangL023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JiangLWF23,
author = {Hangjin Jiang and
Han Li and
Wing Hung Wong and
Xiaodan Fan},
title = {Revealing Free Energy Landscape From {MD} Data via Conditional Angle
Partition Tree},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1384--1394},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3172352},
doi = {10.1109/TCBB.2022.3172352},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JiangLWF23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JiangQLLZWL23,
author = {Yelu Jiang and
Lijun Quan and
Kailong Li and
Yan Li and
Yiting Zhou and
Tingfang Wu and
Qiang Lyu},
title = {DGCddG: Deep Graph Convolution for Predicting Protein-Protein Binding
Affinity Changes Upon Mutations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2089--2100},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3233627},
doi = {10.1109/TCBB.2022.3233627},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JiangQLLZWL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JiangSL23,
author = {Yatong Jiang and
Tao Shang and
Jianwei Liu},
title = {Secure Counting Query Protocol for Genomic Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1457--1468},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3178446},
doi = {10.1109/TCBB.2022.3178446},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JiangSL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JiangSZYL23,
author = {Likun Jiang and
Nan Sun and
Yue Zhang and
Xinyu Yu and
Xiangrong Liu},
title = {Bioactive Peptide Recognition Based on {NLP} Pre-Train Algorithm},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3809--3819},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3323295},
doi = {10.1109/TCBB.2023.3323295},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/JiangSZYL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JiangTJHL23,
author = {Changzhi Jiang and
Minli Tang and
Shuting Jin and
Wei Huang and
Xiangrong Liu},
title = {{KGNMDA:} {A} Knowledge Graph Neural Network Method for Predicting
Microbe-Disease Associations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1147--1155},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3184362},
doi = {10.1109/TCBB.2022.3184362},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JiangTJHL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JosephS23,
author = {Steffy Maria Joseph and
P. S. Sathidevi},
title = {An Automated cDNA Microarray Image Analysis for the Determination
of Gene Expression Ratios},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {136--150},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3135650},
doi = {10.1109/TCBB.2021.3135650},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JosephS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KangWPTCY23,
author = {Yan Kang and
Haining Wang and
Bin Pu and
Liu Tao and
Jianguo Chen and
Philip S. Yu},
title = {A Hybrid Two-Stage Teaching-Learning-Based Optimization Algorithm
for Feature Selection in Bioinformatics},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1746--1760},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3215129},
doi = {10.1109/TCBB.2022.3215129},
timestamp = {Thu, 07 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/KangWPTCY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KariBKY23,
author = {Hemanth Kari and
Surya Manikhanta Sowri Bandi and
Aditya Kumar and
Venkata Rajesh Yella},
title = {DeePromClass: Delineator for Eukaryotic Core Promoters Employing Deep
Neural Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {802--807},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3163418},
doi = {10.1109/TCBB.2022.3163418},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KariBKY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KaurCA23,
author = {Amandeep Kaur and
Ajay Pal Singh Chauhan and
Ashwani Kumar Aggarwal},
title = {Prediction of Enhancers in {DNA} Sequence Data using a Hybrid {CNN-DLSTM}
Model},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1327--1336},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3167090},
doi = {10.1109/TCBB.2022.3167090},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KaurCA23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KerkettaEWHE23,
author = {Romica Kerketta and
M. Frank Erasmus and
Bridget S. Wilson and
{\'{A}}d{\'{a}}m M. Hal{\'{a}}sz and
Jeremy S. Edwards},
title = {Spatial Stochastic Model of the Pre-B Cell Receptor},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {683--693},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3166149},
doi = {10.1109/TCBB.2022.3166149},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KerkettaEWHE23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KimothiBHD23,
author = {Dhananjay Kimothi and
Pravesh Biyani and
James M. Hogan and
Melissa J. Davis},
title = {Sequence Representations and Their Utility for Predicting Protein-Protein
Interactions},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {646--657},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3137325},
doi = {10.1109/TCBB.2021.3137325},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KimothiBHD23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KlosaSLW23,
author = {Jan Klosa and
Noah Simon and
Volkmar Liebscher and
D{\"{o}}rte Wittenburg},
title = {A Fitted Sparse-Group Lasso for Genome-Based Evaluations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {30--38},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3156805},
doi = {10.1109/TCBB.2022.3156805},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KlosaSLW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Koh23,
author = {Hyunwook Koh},
title = {Subgroup Identification Using Virtual Twins for Human Microbiome Studies},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3800--3808},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3324139},
doi = {10.1109/TCBB.2023.3324139},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/Koh23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KuangZLT23,
author = {Mengmeng Kuang and
Yong Zhang and
Tak Wah Lam and
Hing{-}Fung Ting},
title = {MLProbs: {A} Data-Centric Pipeline for Better Multiple Sequence Alignment},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {524--533},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3148382},
doi = {10.1109/TCBB.2022.3148382},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/KuangZLT23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KumarD0P23,
author = {Vikash Kumar and
Akshay Deepak and
Ashish Ranjan and
Aravind Prakash},
title = {Lite-SeqCNN: {A} Light-Weight Deep {CNN} Architecture for Protein
Function Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2242--2253},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3240169},
doi = {10.1109/TCBB.2023.3240169},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KumarD0P23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LahorkarBSRJ23,
author = {Ashwin Lahorkar and
Hrushikesh Bhosale and
Aamod Sane and
Vigneshwar Ramakrishnan and
Valadi K. Jayaraman},
title = {Identification of Phase Separating Proteins With Distributed Reduced
Alphabet Representations of Sequences},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {410--420},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3149310},
doi = {10.1109/TCBB.2022.3149310},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LahorkarBSRJ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LanCYAXYY23,
author = {Jingfen Lan and
Wenxiang Chen and
Ganggang Yin and
Haque A. K. Alvi and
Kun Xie and
Qiang Yu and
Xiguo Yuan},
title = {{LDSSNV:} {A} Linkage Disequilibrium-Based Method for the Detection
of Somatic Single-Nucleotide Variants},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3020--3032},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3291134},
doi = {10.1109/TCBB.2023.3291134},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LanCYAXYY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LandryTLS23,
author = {Kaari Landry and
Aivee Teodocio and
Manuel Lafond and
Olivier Tremblay Savard},
title = {Defining Phylogenetic Network Distances Using Cherry Operations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1654--1666},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3162991},
doi = {10.1109/TCBB.2022.3162991},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LandryTLS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LangaritaAIAM23,
author = {Rub{\'{e}}n Langarita and
Adri{\`{a}} Armejach and
Pablo Ib{\'{a}}{\~{n}}ez and
Jes{\'{u}}s Alastruey{-}Bened{\'{e}} and
Miquel Moret{\'{o}}},
title = {Porting and Optimizing {BWA-MEM2} Using the Fujitsu {A64FX} Processor},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3139--3153},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3264514},
doi = {10.1109/TCBB.2023.3264514},
timestamp = {Thu, 09 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/LangaritaAIAM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LeeKKSL23,
author = {Hunmin Lee and
Mingon Kang and
Donghyun Kim and
Daehee Seo and
Yingshu Li},
title = {Epidemic Vulnerability Index for Effective Vaccine Distribution Against
Pandemic},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3332--3342},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3198365},
doi = {10.1109/TCBB.2022.3198365},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/LeeKKSL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LeeLH23,
author = {Wook Lee and
Seokwoo Lee and
Kyungsook Han},
title = {Constructing a Cancer Patient-Specific Network Based on Second-Order
Partial Correlations of Gene Expression and {DNA} Methylation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {266--276},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3145796},
doi = {10.1109/TCBB.2022.3145796},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LeeLH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LeeLRPH23,
author = {Seokwoo Lee and
Wook Lee and
Shulei Ren and
Byungkyu Park and
Kyungsook Han},
title = {Constructing Integrative ceRNA Networks and Finding Prognostic Biomarkers
in Renal Cell Carcinoma},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2671--2680},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3214190},
doi = {10.1109/TCBB.2022.3214190},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LeeLRPH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiDZL23,
author = {Hong{-}Dong Li and
Chao Deng and
Xiao{-}Qi Zhang and
Cui{-}Xiang Lin},
title = {A Gene Set-Integrated Approach for Predicting Disease-Associated Genes},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3440--3450},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3214517},
doi = {10.1109/TCBB.2022.3214517},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/LiDZL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiJOYZ23,
author = {Bo Li and
Ke Jin and
Le Ou{-}Yang and
Hong Yan and
Xiao{-}Fei Zhang},
title = {scTSSR2: Imputing Dropout Events for Single-Cell {RNA} Sequencing
Using Fast Two-Side Self-Representation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1445--1456},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3170587},
doi = {10.1109/TCBB.2022.3170587},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiJOYZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiKCWLM23,
author = {Ye Li and
Fanhui Kong and
Hui Cui and
Fan Wang and
Chunquan Li and
Jiquan Ma},
title = {{SENIES:} {DNA} Shape Enhanced Two-Layer Deep Learning Predictor for
the Identification of Enhancers and Their Strength},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {637--645},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3142019},
doi = {10.1109/TCBB.2022.3142019},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiKCWLM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiLMNZ23,
author = {Yuguang Li and
Shuai Lu and
Qiang Ma and
Xiaofei Nan and
Shoutao Zhang},
title = {Protein-Protein Interaction Site Prediction Based on Attention Mechanism
and Convolutional Neural Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3820--3829},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3323493},
doi = {10.1109/TCBB.2023.3323493},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/LiLMNZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiLMZ23,
author = {Jianyuan Li and
Xiong Luo and
Huimin Ma and
Wenbing Zhao},
title = {A Hybrid Deep Transfer Learning Model With Kernel Metric for {COVID-19}
Pneumonia Classification Using Chest {CT} Images},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2506--2517},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3216661},
doi = {10.1109/TCBB.2022.3216661},
timestamp = {Mon, 20 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/LiLMZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiLXLCWZ23,
author = {Xiong Li and
Yangkai Lin and
Chengwang Xie and
Zejun Li and
Min Chen and
Peng Wang and
Juan Zhou},
title = {A Clustering Method Unifying Cell-Type Recognition and Subtype Identification
for Tumor Heterogeneity Analysis},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {822--832},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3203185},
doi = {10.1109/TCBB.2022.3203185},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiLXLCWZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiQJLZWL23,
author = {Kailong Li and
Lijun Quan and
Yelu Jiang and
Yan Li and
Yiting Zhou and
Tingfang Wu and
Qiang Lyu},
title = {ctP\({}^{\mbox{2}}\)ISP: Protein-Protein Interaction Sites Prediction
Using Convolution and Transformer With Data Augmentation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {297--306},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3154413},
doi = {10.1109/TCBB.2022.3154413},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiQJLZWL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiSLL23,
author = {Jiefu Li and
Aman Sawhney and
Jung{-}Youn Lee and
Li Liao},
title = {Improving Inter-Helix Contact Prediction With Local 2D Topological
Information},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3001--3012},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3274361},
doi = {10.1109/TCBB.2023.3274361},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiSLL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiSWYFALYY23,
author = {Qiang Li and
Hong Song and
Zenghui Wei and
Fengbo Yang and
Jingfan Fan and
Danni Ai and
Yucong Lin and
Xiaoling Yu and
Jian Yang},
title = {Densely Connected U-Net With Criss-Cross Attention for Automatic Liver
Tumor Segmentation in {CT} Images},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3399--3410},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3198425},
doi = {10.1109/TCBB.2022.3198425},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/LiSWYFALYY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiSZZL23,
author = {Min Li and
Wenbo Shi and
Fuhao Zhang and
Min Zeng and
Yaohang Li},
title = {A Deep Learning Framework for Predicting Protein Functions With Co-Occurrence
of {GO} Terms},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {833--842},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3170719},
doi = {10.1109/TCBB.2022.3170719},
timestamp = {Mon, 01 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiSZZL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiWYHYW23,
author = {Zheng{-}Wei Li and
Qiankun Wang and
Chang{-}An Yuan and
Pengyong Han and
Zhu{-}Hong You and
Lei Wang},
title = {Predicting MiRNA-Disease Associations by Graph Representation Learning
Based on Jumping Knowledge Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2629--2638},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3196394},
doi = {10.1109/TCBB.2022.3196394},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiWYHYW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiWYL23,
author = {Jianwei Li and
Duanyang Wang and
Zhenwu Yang and
Ming Liu},
title = {{HEGANLDA:} {A} Computational Model for Predicting Potential Lncrna-Disease
Associations Based On Multiple Heterogeneous Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {388--398},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3136886},
doi = {10.1109/TCBB.2021.3136886},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiWYL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiXLMLFZL23,
author = {Aimin Li and
Siqi Xiong and
Junhuai Li and
Saurav Mallik and
Yajun Liu and
Rong Fei and
Hongfang Zhou and
Guangming Liu},
title = {AngClust: Angle Feature-Based Clustering for Short Time Series Gene
Expression Profiles},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1574--1580},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3192306},
doi = {10.1109/TCBB.2022.3192306},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiXLMLFZL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiangXZJYY23,
author = {Tingting Liang and
Congying Xia and
Ziqiang Zhao and
Yixuan Jiang and
Yuyu Yin and
Philip S. Yu},
title = {Transferring From Textual Entailment to Biomedical Named Entity Recognition},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2577--2586},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3236477},
doi = {10.1109/TCBB.2023.3236477},
timestamp = {Fri, 18 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiangXZJYY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiangYLZWLC23,
author = {Yixiong Liang and
Zhihua Yin and
Haotian Liu and
Hailong Zeng and
Jianxin Wang and
Jianfeng Liu and
Nanying Che},
title = {Weakly Supervised Deep Nuclei Segmentation With Sparsely Annotated
Bounding Boxes for {DNA} Image Cytometry},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {785--795},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3138189},
doi = {10.1109/TCBB.2021.3138189},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiangYLZWLC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LimaAFCS23,
author = {Diego de S. Lima and
Luiz J. A. Amichi and
Maria A. Fernandez and
Ademir Aparecido Constantino and
Fl{\'{a}}vio A. V. Seixas},
title = {NCYPred: {A} Bidirectional {LSTM} Network With Attention for {Y} {RNA}
and Short Non-Coding {RNA} Classification},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {557--565},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3131136},
doi = {10.1109/TCBB.2021.3131136},
timestamp = {Fri, 02 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LimaAFCS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LinDSCLVHDTGKM23,
author = {Chun Pang Lin and
Yajie Duan and
Davit Sargsyan and
Javier Cabrera and
Christine M. Livingston and
Robert Vogel and
John Hartman and
Mayukh Das and
Willem Talloen and
Helena Geys and
Evangelos D. Kanoulas and
Surya Mohanty},
title = {Automated Spot Counting in Microbiology},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3703--3714},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3317339},
doi = {10.1109/TCBB.2023.3317339},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/LinDSCLVHDTGKM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LinKLSJY0023,
author = {Xiangbin Lin and
Weizhuang Kong and
Jianxiu Li and
Xuexiao Shao and
Changting Jiang and
Ruilan Yu and
Xiaowei Li and
Bin Hu},
title = {Aberrant Static and Dynamic Functional Brain Network in Depression
Based on {EEG} Source Localization},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1876--1889},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3222592},
doi = {10.1109/TCBB.2022.3222592},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LinKLSJY0023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LinQWGZY23,
author = {Xuan Lin and
Zhe Quan and
Zhi{-}Jie Wang and
Yan Guo and
Xiangxiang Zeng and
Philip S. Yu},
title = {Effectively Identifying Compound-Protein Interaction Using Graph Neural
Representation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {932--943},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3198003},
doi = {10.1109/TCBB.2022.3198003},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LinQWGZY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LinTLL23,
author = {Jinghang Lin and
Xiaoran Tong and
Chenxi Li and
Qing Lu},
title = {Expectile Neural Networks for Genetic Data Analysis of Complex Diseases},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {352--359},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3146795},
doi = {10.1109/TCBB.2022.3146795},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LinTLL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuCSWZ23,
author = {Xue Liu and
Qian Cheng and
Dan Sun and
Wei Wei and
Zhiming Zheng},
title = {Anonymous Pattern Molecular Fingerprint and its Applications on Property
Identification},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3759--3771},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3322697},
doi = {10.1109/TCBB.2023.3322697},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/LiuCSWZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuHDZYFH23,
author = {Ran Liu and
Ye{-}Fan Hu and
Jin Du and
Bao{-}Zhong Zhang and
Thomas Yau and
Xiaodan Fan and
Jian{-}Dong Huang},
title = {Family-Specific Training Improves Linear {B} Cell Epitope Prediction
for Emerging Viruses},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3669--3680},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3311444},
doi = {10.1109/TCBB.2023.3311444},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/LiuHDZYFH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuJNWQZ23,
author = {Zhi{-}Hao Liu and
Cunmei Ji and
Jian{-}Cheng Ni and
Yu{-}Tian Wang and
Li{-}Juan Qiao and
Chun{-}Hou Zheng},
title = {Convolution Neural Networks Using Deep Matrix Factorization for Predicting
Circrna-Disease Association},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {277--284},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3138339},
doi = {10.1109/TCBB.2021.3138339},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuJNWQZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuKD23,
author = {Jiwen Liu and
Zhufang Kuang and
Lei Deng},
title = {{GCNPCA:} miRNA-Disease Associations Prediction Algorithm Based on
Graph Convolutional Neural Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1041--1052},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3203564},
doi = {10.1109/TCBB.2022.3203564},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuKD23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuLDLC23,
author = {Qie Liu and
Junhao Li and
Mingyu Dong and
Min Liu and
Yi Chai},
title = {Identification of Gene Regulatory Networks Using Variational Bayesian
Inference in the Presence of Missing Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {399--409},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3144418},
doi = {10.1109/TCBB.2022.3144418},
timestamp = {Sat, 20 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuLDLC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuLLWW23,
author = {Kun Liu and
Hong{-}Dong Li and
Yaohang Li and
Jun Wang and
Jianxin Wang},
title = {A Comparison of Topologically Associating Domain Callers Based on
Hi-C Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {15--29},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3147805},
doi = {10.1109/TCBB.2022.3147805},
timestamp = {Thu, 04 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuLLWW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuLMHDHL23,
author = {Qiaoliang Liu and
Fu Liu and
Yan Miao and
Jiaxue He and
Tian Dong and
Tao Hou and
Yun Liu},
title = {Virsearcher: Identifying Bacteriophages from Metagenomes by Combining
Convolutional Neural Network and Gene Information},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {763--774},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3161135},
doi = {10.1109/TCBB.2022.3161135},
timestamp = {Thu, 16 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuLMHDHL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuLTX23,
author = {Yongchang Liu and
Peiying Li and
Shikui Tu and
Lei Xu},
title = {RefinePocket: An Attention-Enhanced and Mask-Guided Deep Learning
Approach for Protein Binding Site Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3314--3321},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3265640},
doi = {10.1109/TCBB.2023.3265640},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuLTX23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuLXLPW23,
author = {Yingyi Liu and
Hong{-}Dong Li and
Yunpei Xu and
Yi{-}Wei Liu and
Xiaoqing Peng and
Jianxin Wang},
title = {IsoCell: An Approach to Enhance Single Cell Clustering by Integrating
Isoform-Level Expression Through Orthogonal Projection},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {465--475},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3147193},
doi = {10.1109/TCBB.2022.3147193},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuLXLPW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuLZHZLD23,
author = {Dayun Liu and
Xianghui Li and
Liangliang Zhang and
Xiaowen Hu and
Jiaxuan Zhang and
Zhirong Liu and
Lei Deng},
title = {{HGNNLDA:} Predicting lncRNA-Drug Sensitivity Associations via a Dual
Channel Hypergraph Neural Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3547--3555},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3302468},
doi = {10.1109/TCBB.2023.3302468},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/LiuLZHZLD23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuWZLW23,
author = {Qiaoming Liu and
Dong Wang and
Li Zhou and
Jie Li and
Guohua Wang},
title = {{MTGDC:} {A} Multi-Scale Tensor Graph Diffusion Clustering for Single-Cell
{RNA} Sequencing Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3056--3067},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3293112},
doi = {10.1109/TCBB.2023.3293112},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuWZLW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuYGSZ23,
author = {Jin{-}Xing Liu and
Meng{-}Meng Yin and
Ying{-}Lian Gao and
Junliang Shang and
Chun{-}Hou Zheng},
title = {{MSF-LRR:} Multi-Similarity Information Fusion Through Low-Rank Representation
to Predict Disease-Associated Microbes},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {534--543},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3146176},
doi = {10.1109/TCBB.2022.3146176},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuYGSZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuZ23,
author = {Kangchen Liu and
Xiujun Zhang},
title = {PiTLiD: Identification of Plant Disease From Leaf Images Based on
Convolutional Neural Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1278--1288},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3195291},
doi = {10.1109/TCBB.2022.3195291},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuZCQDZZ23,
author = {Shichao Liu and
Yang Zhang and
Yuxin Cui and
Yang Qiu and
Yifan Deng and
Zhongfei Zhang and
Wen Zhang},
title = {Enhancing Drug-Drug Interaction Prediction Using Deep Attention Neural
Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {976--985},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3172421},
doi = {10.1109/TCBB.2022.3172421},
timestamp = {Fri, 01 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/LiuZCQDZZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuZS23,
author = {Shuhui Liu and
Yupei Zhang and
Xuequn Shang},
title = {GLassonet: Identifying Discriminative Gene Sets Among Molecular Subtypes
of Breast Cancer},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1905--1916},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3220623},
doi = {10.1109/TCBB.2022.3220623},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuZS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuZW23,
author = {Qiaoming Liu and
Xudong Zhao and
Guohua Wang},
title = {A Clustering Ensemble Method for Cell Type Detection by Multiobjective
Particle Optimization},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {1--14},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3132400},
doi = {10.1109/TCBB.2021.3132400},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuZW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuZWWL23,
author = {Nian{-}Nian Liu and
Ze{-}Qun Zhang and
Yanan Wu and
Ying{-}Long Wang and
Ying Liang},
title = {CRBSP:Prediction of CircRNA-RBP Binding Sites Based on Multimodal
Intermediate Fusion},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2898--2906},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3272400},
doi = {10.1109/TCBB.2023.3272400},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuZWWL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuZZZG23,
author = {Jin{-}Xing Liu and
Dai{-}Jun Zhang and
Jing{-}Xiu Zhao and
Chun{-}Hou Zheng and
Ying{-}Lian Gao},
title = {Non-Negative Low-Rank Representation With Similarity Correction for
Cell Type Identification in scRNA-Seq Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3737--3747},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3319375},
doi = {10.1109/TCBB.2023.3319375},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/LiuZZZG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LuCLHS23,
author = {Xinguo Lu and
Guanyuan Chen and
Jinxin Li and
Xiangjin Hu and
Fengxu Sun},
title = {{MAGCN:} {A} Multiple Attention Graph Convolution Networks for Predicting
Synthetic Lethality},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2681--2689},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3221736},
doi = {10.1109/TCBB.2022.3221736},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LuCLHS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LuWMLS23,
author = {Zhaowu Lu and
Jun Wang and
Rui Mao and
Minhua Lu and
Jun Shi},
title = {Jointly Composite Feature Learning and Autism Spectrum Disorder Classification
Using Deep Multi-Output Takagi-Sugeno-Kang Fuzzy Inference Systems},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {476--488},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3163140},
doi = {10.1109/TCBB.2022.3163140},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LuWMLS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LuoWHH23,
author = {Xin Luo and
Liwei Wang and
Pengwei Hu and
Lun Hu},
title = {Predicting Protein-Protein Interactions Using Sequence and Network
Information via Variational Graph Autoencoder},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3182--3194},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3273567},
doi = {10.1109/TCBB.2023.3273567},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LuoWHH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LvLJHS23,
author = {Ji Lv and
Guixia Liu and
Yuan Ju and
Houhou Huang and
Ying Sun},
title = {{AADB:} {A} Manually Collected Database for Combinations of Antibiotics
With Adjuvants},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2827--2836},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3283221},
doi = {10.1109/TCBB.2023.3283221},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LvLJHS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LvLYWZ23,
author = {Zhilong Lv and
Yuexiao Lin and
Rui Yan and
Ying Wang and
Fa Zhang},
title = {TransSurv: Transformer-Based Survival Analysis Model Integrating Histopathological
Images and Genomic Data for Colorectal Cancer},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3411--3420},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3199244},
doi = {10.1109/TCBB.2022.3199244},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/LvLYWZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MaDBDXWLN23,
author = {Lijia Ma and
Wenwei Deng and
Yuan Bai and
Zhanwei Du and
Minfeng Xiao and
Lin Wang and
Jianqiang Li and
Asoke K. Nandi},
title = {Identifying Phage Sequences From Metagenomic Data Using Deep Neural
Network With Word Embedding and Attention Mechanism},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3772--3785},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3322870},
doi = {10.1109/TCBB.2023.3322870},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/MaDBDXWLN23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MaKD23,
author = {Zhihao Ma and
Zhufang Kuang and
Lei Deng},
title = {{NGCICM:} {A} Novel Deep Learning-Based Method for Predicting circRNA-miRNA
Interactions},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3080--3092},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3248787},
doi = {10.1109/TCBB.2023.3248787},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MaKD23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MaWHMSXCG23,
author = {Yuxin Ma and
Shuo Wang and
Yang Hua and
Ruhui Ma and
Tao Song and
Zhengui Xue and
Heng Cao and
Haibing Guan},
title = {Perceptual Data Augmentation for Biomedical Coronary Vessel Segmentation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2494--2505},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3188148},
doi = {10.1109/TCBB.2022.3188148},
timestamp = {Fri, 18 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MaWHMSXCG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MaZW23,
author = {Xiaoke Ma and
Wei Zhao and
Wenming Wu},
title = {Layer-Specific Modules Detection in Cancer Multi-Layer Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1170--1179},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3176859},
doi = {10.1109/TCBB.2022.3176859},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MaZW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MadadiMCSWY23,
author = {Yeganeh Madadi and
Aboozar Monavarfeshani and
Hao Chen and
W. Daniel Stamer and
Robert W. Williams and
Siamak Yousefi},
title = {Artificial Intelligence Models for Cell Type and Subtype Identification
Based on Single-Cell {RNA} Sequencing Data in Vision Science},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2837--2852},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3284795},
doi = {10.1109/TCBB.2023.3284795},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MadadiMCSWY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Maia0FM23,
author = {Marcelo Rodrigues de Holanda Maia and
Alexandre Plastino and
Alex Alves Freitas and
Jo{\~{a}}o Pedro de Magalh{\~{a}}es},
title = {Interpretable Ensembles of Classifiers for Uncertain Data With Bioinformatics
Applications},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1829--1841},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3218588},
doi = {10.1109/TCBB.2022.3218588},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Maia0FM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ManipurGPPM23,
author = {Ichcha Manipur and
Maurizio Giordano and
Marina Piccirillo and
Seetharaman Parashuraman and
Lucia Maddalena},
title = {Community Detection in Protein-Protein Interaction Networks and Applications},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {217--237},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3138142},
doi = {10.1109/TCBB.2021.3138142},
timestamp = {Fri, 08 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ManipurGPPM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Martin-VideV23,
author = {Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Algorithms for Computational Biology: Eighth Edition},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1626--1627},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3218808},
doi = {10.1109/TCBB.2022.3218808},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Martin-VideV23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MartinezPazGMCGHT23,
author = {Pedro Mart{\'{\i}}nez{-}Paz and
Javier Gomez{-}Pilar and
Marta Mart{\'{\i}}n{-}Fern{\'{a}}ndez and
Francisco C. Ceballos and
Esther G{\'{o}}mez{-}S{\'{a}}nchez and
Roberto Hornero and
Eduardo Tamayo},
title = {Gene Co-Expression Networks Offer New Perspectives on Sepsis Pathophysiology},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3660--3668},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3309998},
doi = {10.1109/TCBB.2023.3309998},
timestamp = {Fri, 26 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/MartinezPazGMCGHT23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MitraMKHR23,
author = {Anushka Mitra and
Shibambika Manna and
Raima Kundu and
Ditipriya Hazra and
Amlan Roychowdhury},
title = {Brute Force Virtual Drug Screening with Molecular Dynamics Simulation
and {MM/PBSA} to Find Potent Inhibitors of {METTL16}},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2356--2361},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3233670},
doi = {10.1109/TCBB.2022.3233670},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MitraMKHR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MondalB23,
author = {Abhijit Mondal and
Mukul S. Bansal},
title = {Generalizing the Domain-Gene-Species Reconciliation Framework to Microbial
Genes and Domains},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3511--3522},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3294480},
doi = {10.1109/TCBB.2023.3294480},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/MondalB23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MondalJSA23,
author = {Arnab Kumar Mondal and
Indu Joshi and
Pravendra Singh and
Prathosh AP},
title = {Clustering Single-Cell {RNA} Sequence Data Using Information Maximized
and Noise-Invariant Representations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1983--1994},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3227202},
doi = {10.1109/TCBB.2022.3227202},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MondalJSA23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MouJ23,
author = {Chenqi Mou and
Wenwen Ju},
title = {Sparse Triangular Decomposition for Computing Equilibria of Biological
Dynamic Systems Based on Chordal Graphs},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1667--1678},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3156759},
doi = {10.1109/TCBB.2022.3156759},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MouJ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MoultonW23,
author = {Vincent Moulton and
Taoyang Wu},
title = {Planar Rooted Phylogenetic Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1289--1297},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3185670},
doi = {10.1109/TCBB.2022.3185670},
timestamp = {Mon, 01 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MoultonW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/NazariZ23,
author = {Leyla Nazari and
Zahra Zinati},
title = {Gene Expression Classification for Biomarker Identification in Maize
Subjected to Various Biotic Stresses},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2170--2176},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3233844},
doi = {10.1109/TCBB.2022.3233844},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/NazariZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/NguyenQNT23,
author = {Tri Minh Nguyen and
Thomas P. Quinn and
Thin Nguyen and
Truyen Tran},
title = {Explaining Black Box Drug Target Prediction Through Model Agnostic
Counterfactual Samples},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1020--1029},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3190266},
doi = {10.1109/TCBB.2022.3190266},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/NguyenQNT23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/NiCLWYLX23,
author = {Zhichen Ni and
Honglong Chen and
Zhe Li and
Xiaomeng Wang and
Na Yan and
Weifeng Liu and
Feng Xia},
title = {{MSCET:} {A} Multi-Scenario Offloading Schedule for Biomedical Data
Processing and Analysis in Cloud-Edge-Terminal Collaborative Vehicular
Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2376--2386},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3131177},
doi = {10.1109/TCBB.2021.3131177},
timestamp = {Fri, 18 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/NiCLWYLX23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/OhashiMS23,
author = {Masataka Ohashi and
Shin{-}ichi Maeda and
Chikara Sato},
title = {Helical Three Dimensional Reconstruction Using Bayesian Optimization
for Cryogenic Electron Microscopy},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2970--2980},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3268793},
doi = {10.1109/TCBB.2023.3268793},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/OhashiMS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PaivaP23,
author = {Antonio R. Paiva and
Giovanni Pilloni},
title = {Inferring Microbial Biomass Yield and Cell Weight Using Probabilistic
Macrochemical Modeling},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {442--454},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3139290},
doi = {10.1109/TCBB.2021.3139290},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PaivaP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PanZLLZW23,
author = {Zhengsen Pan and
Shusen Zhou and
Tong Liu and
Chanjuan Liu and
Mujun Zang and
Qingjun Wang},
title = {{WVDL:} Weighted Voting Deep Learning Model for Predicting RNA-Protein
Binding Sites},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3322--3328},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3252276},
doi = {10.1109/TCBB.2023.3252276},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PanZLLZW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PanZZLZLW23,
author = {Zhengsen Pan and
Shusen Zhou and
Hailin Zou and
Chanjuan Liu and
Mujun Zang and
Tong Liu and
Qingjun Wang},
title = {{MCNN:} Multiple Convolutional Neural Networks for RNA-Protein Binding
Sites Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1180--1187},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3170367},
doi = {10.1109/TCBB.2022.3170367},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PanZZLZLW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PedroFPBMN23,
author = {Ricardo Wandr{\'{e}} Dias Pedro and
Ana Luiza Silveira Ferreira and
Rodolph Vinicius Siqueira Pessoa and
Almir Galv{\~{a}}o Vieira Bitencourt and
Ariane Machado{-}Lima and
F{\'{a}}tima L. S. Nunes},
title = {A Stochastic Grammar Approach to Mass Classification in Mammograms},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2302--2313},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3247144},
doi = {10.1109/TCBB.2023.3247144},
timestamp = {Fri, 21 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PedroFPBMN23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PengCDWL23,
author = {Wei Peng and
Zicheng Che and
Wei Dai and
Shoulin Wei and
Wei Lan},
title = {Predicting miRNA-Disease Associations From miRNA-Gene-Disease Heterogeneous
Network With Multi-Relational Graph Convolutional Network Model},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3363--3375},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3187739},
doi = {10.1109/TCBB.2022.3187739},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/PengCDWL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PengLDCFP23,
author = {Wei Peng and
Ming Liu and
Wei Dai and
Tielin Chen and
Yu Fu and
Yi Pan},
title = {Multi-View Feature Aggregation for Predicting Microbe-Disease Association},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2748--2758},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3132611},
doi = {10.1109/TCBB.2021.3132611},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PengLDCFP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PengZCDLW23,
author = {Xiaoqing Peng and
Wenjin Zhang and
Wanxin Cui and
Binrong Ding and
Qingtong Lyu and
Jianxin Wang},
title = {ADmeth: {A} Manually Curated Database for the Differential Methylation
in Alzheimer's Disease},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {843--851},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3178087},
doi = {10.1109/TCBB.2022.3178087},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PengZCDLW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PersiaLAMS23,
author = {Leandro E. Di Persia and
Tiago Lopez and
Agustin Arce and
Diego H. Milone and
Georgina Stegmayer},
title = {exp2GO: Improving Prediction of Functions in the Gene Ontology With
Expression Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {999--1008},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3167245},
doi = {10.1109/TCBB.2022.3167245},
timestamp = {Mon, 01 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PersiaLAMS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Pham23,
author = {Tuan D. Pham},
title = {Classification of Caenorhabditis Elegans Locomotion Behaviors With
Eigenfeature-Enhanced Long Short-Term Memory Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {206--216},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3153668},
doi = {10.1109/TCBB.2022.3153668},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Pham23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Pham23a,
author = {Tuan D. Pham},
title = {Prediction of Five-Year Survival Rate for Rectal Cancer Using Markov
Models of Convolutional Features of RhoB Expression on Tissue Microarray},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3195--3204},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3274211},
doi = {10.1109/TCBB.2023.3274211},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Pham23a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/QayyumRTMA23,
author = {Abdul Qayyum and
Imran Razzak and
M. Tanveer and
Moona Mazher and
Bandar Alhaqbani},
title = {High-Density Electroencephalography and Speech Signal Based Deep Framework
for Clinical Depression Diagnosis},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2587--2597},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3257175},
doi = {10.1109/TCBB.2023.3257175},
timestamp = {Fri, 18 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/QayyumRTMA23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/QianDZG23,
author = {Yuqing Qian and
Yijie Ding and
Quan Zou and
Fei Guo},
title = {Multi-View Kernel Sparse Representation for Identification of Membrane
Protein Types},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1234--1245},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3191325},
doi = {10.1109/TCBB.2022.3191325},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/QianDZG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/QianZJLD23,
author = {Yurong Qian and
Jingjing Zheng and
Ying Jiang and
Shaoqiu Li and
Lei Deng},
title = {Prediction of circRNA-MiRNA Association Using Singular Value Decomposition
and Graph Neural Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3461--3468},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3222777},
doi = {10.1109/TCBB.2022.3222777},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/QianZJLD23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/QiaoGJLZW23,
author = {Li{-}Juan Qiao and
Zhen Gao and
Cunmei Ji and
Zhi{-}Hao Liu and
Chun{-}Hou Zheng and
Yu{-}Tian Wang},
title = {Potential circRNA-Disease Association Prediction Using DeepWalk and
Nonnegative Matrix Factorization},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3154--3162},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3264466},
doi = {10.1109/TCBB.2023.3264466},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/QiaoGJLZW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/QiuE23,
author = {Junqiao Qiu and
Ali Ebnenasir},
title = {Exploring Scalable Parallelization for Edit Distance-Based Motif Search},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1587--1593},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3208867},
doi = {10.1109/TCBB.2022.3208867},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/QiuE23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/QuanCSWL23,
author = {Lijun Quan and
Xiaomin Chu and
Xiaoyu Sun and
Tingfang Wu and
Qiang Lyu},
title = {How Deepbics Quantifies Intensities of Transcription Factor-DNA Binding
and Facilitates Prediction of Single Nucleotide Variant Pathogenicity
With a Deep Learning Model Trained On ChIP-Seq Data Sets},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1594--1599},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3170343},
doi = {10.1109/TCBB.2022.3170343},
timestamp = {Fri, 28 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/QuanCSWL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/QureshiZAWLY23,
author = {Rizwan Qureshi and
Bin Zou and
Tanvir Alam and
Jia Wu and
Victor H. F. Lee and
Hong Yan},
title = {Computational Methods for the Analysis and Prediction of EGFR-Mutated
Lung Cancer Drug Resistance: Recent Advances in Drug Design, Challenges
and Future Prospects},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {238--255},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3141697},
doi = {10.1109/TCBB.2022.3141697},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/QureshiZAWLY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/RagiRDJCG23,
author = {Shankarachary Ragi and
Md Hafizur Rahman and
Jamison Duckworth and
Kalimuthu Jawaharraj and
Parvathi Chundi and
Venkataramana Gadhamshetty},
title = {Artificial Intelligence-Driven Image Analysis of Bacterial Cells and
Biofilms},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {174--184},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3138304},
doi = {10.1109/TCBB.2021.3138304},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/RagiRDJCG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/RanaCPM23,
author = {Vishal Rana and
Eli Chien and
Jianhao Peng and
Olgica Milenkovic},
title = {Small-Sample Estimation of the Mutational Support and Distribution
of SARS-CoV-2},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {668--682},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3165395},
doi = {10.1109/TCBB.2022.3165395},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/RanaCPM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/RanjanFFTD23,
author = {Ashish Ranjan and
Md. S. Fahad and
David Fern{\'{a}}ndez{-}Baca and
Sudhakar Tripathi and
Akshay Deepak},
title = {MCWS-Transformers: Towards an Efficient Modeling of Protein Sequences
via Multi Context-Window Based Scaled Self-Attention},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1188--1199},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3173789},
doi = {10.1109/TCBB.2022.3173789},
timestamp = {Wed, 17 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/RanjanFFTD23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/RanjanTD23,
author = {Ashish Ranjan and
Archana Tiwari and
Akshay Deepak},
title = {A Sub-Sequence Based Approach to Protein Function Prediction via Multi-Attention
Based Multi-Aspect Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {94--105},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3130923},
doi = {10.1109/TCBB.2021.3130923},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/RanjanTD23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/RaoCYMSZ23,
author = {Fan Rao and
Minghan Chen and
Defu Yang and
Bess Morrell and
Qianqian Song and
Wentao Zhu},
title = {scENT for Revealing Gene Clusters From Single-Cell RNA-Seq Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2266--2277},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3242260},
doi = {10.1109/TCBB.2023.3242260},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/RaoCYMSZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/RashidSK23,
author = {Shamima Rashid and
Suresh Sundaram and
Chee Keong Kwoh},
title = {Empirical Study of Protein Feature Representation on Deep Belief Networks
Trained With Small Data for Secondary Structure Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {955--966},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3168676},
doi = {10.1109/TCBB.2022.3168676},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/RashidSK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/RavikumarXAFR23,
author = {Visweswaran Ravikumar and
Tong Xu and
Wajd N. Al{-}Holou and
Salar Fattahi and
Arvind Rao},
title = {Efficient Inference of Spatially-Varying Gaussian Markov Random Fields
With Applications in Gene Regulatory Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2920--2932},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3282028},
doi = {10.1109/TCBB.2023.3282028},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/RavikumarXAFR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/RehmanTC23,
author = {Mobeen Ur Rehman and
Hilal Tayara and
Kil To Chong},
title = {DL-m6A: Identification of N6-Methyladenosine Sites in Mammals Using
Deep Learning Based on Different Encoding Schemes},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {904--911},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3192572},
doi = {10.1109/TCBB.2022.3192572},
timestamp = {Sun, 24 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/RehmanTC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/RenGZHZL23,
author = {Sheng Ren and
Kehua Guo and
Xiaokang Zhou and
Bin Hu and
Feihong Zhu and
Entao Luo},
title = {Medical Image Super-Resolution Based on Semantic Perception Transfer
Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2598--2609},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3212343},
doi = {10.1109/TCBB.2022.3212343},
timestamp = {Thu, 14 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/RenGZHZL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/RiahiWPCD23,
author = {Aryan Tajmir Riahi and
Geoffrey Woollard and
Fr{\'{e}}d{\'{e}}ric Poitevin and
Anne Condon and
Khanh Dao Duc},
title = {AlignOT: An Optimal Transport Based Algorithm for Fast 3D Alignment
With Applications to Cryogenic Electron Microscopy Density Maps},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3842--3850},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3327633},
doi = {10.1109/TCBB.2023.3327633},
timestamp = {Fri, 26 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/RiahiWPCD23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/RomashchenkoLRP23,
author = {Nikolai Romashchenko and
Benjamin Linard and
Eric Rivals and
Fabio Pardi},
title = {Computing Phylo-{\textdollar}k{\textdollar}k-Mers},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2889--2897},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3278049},
doi = {10.1109/TCBB.2023.3278049},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/RomashchenkoLRP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/RoyDG23,
author = {Satyaki Roy and
Pratyay Dutta and
Preetam Ghosh},
title = {Hierarchical Vaccine Allocation Based on Epidemiological and Behavioral
Considerations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2981--2991},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3265317},
doi = {10.1109/TCBB.2023.3265317},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/RoyDG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Sabahi23,
author = {Farnaz Sabahi},
title = {A Design of mRNA-Based {COVID-19} Vaccine Through Fuzzy Neural Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3648--3659},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3309650},
doi = {10.1109/TCBB.2023.3309650},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/Sabahi23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SaheedBOA23,
author = {Kayode Yakub Saheed and
Bukola Fatimah Balogun and
Braimah Joseph Odunayo and
Mustapha Abdulsalam},
title = {Microarray Gene Expression Data Classification via Wilcoxon Sign Rank
Sum and Novel Grey Wolf Optimized Ensemble Learning Models},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3575--3587},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3305429},
doi = {10.1109/TCBB.2023.3305429},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/SaheedBOA23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SainiS23,
author = {Manisha Saini and
Seba Susan},
title = {VGGIN-Net: Deep Transfer Network for Imbalanced Breast Cancer Dataset},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {752--762},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3163277},
doi = {10.1109/TCBB.2022.3163277},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SainiS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SequeirosO0B23,
author = {Carlos Sequeiros and
Irene Otero{-}Muras and
Carlos V{\'{a}}zquez and
Julio R. Banga},
title = {Global Optimization Approach for Parameter Estimation in Stochastic
Dynamic Models of Biosystems},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1971--1982},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3225675},
doi = {10.1109/TCBB.2022.3225675},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SequeirosO0B23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ShafieeFT23,
author = {Shima Shafiee and
Abdolhossein Fathi and
Ghazaleh Taherzadeh},
title = {SPPPred: Sequence-Based Protein-Peptide Binding Residue Prediction
Using Genetic Programming and Ensemble Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2029--2040},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3230540},
doi = {10.1109/TCBB.2022.3230540},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ShafieeFT23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ShahM23,
author = {Ekta Shah and
Pradipta Maji},
title = {Multi-View Kernel Learning for Identification of Disease Genes},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2278--2290},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3247033},
doi = {10.1109/TCBB.2023.3247033},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ShahM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ShenZDLW23,
author = {Yang Shen and
Jinlin Zhu and
Zhaohong Deng and
Wenwei Lu and
Hongchao Wang},
title = {EnsDeepDP: An Ensemble Deep Learning Approach for Disease Prediction
Through Metagenomics},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {986--998},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3201295},
doi = {10.1109/TCBB.2022.3201295},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ShenZDLW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ShengHGCXW23,
author = {Nan Sheng and
Lan Huang and
Ling Gao and
Yangkun Cao and
Xuping Xie and
Yan Wang},
title = {A Survey of Computational Methods and Databases for lncRNA-MiRNA Interaction
Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2810--2826},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3264254},
doi = {10.1109/TCBB.2023.3264254},
timestamp = {Wed, 01 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/ShengHGCXW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ShiFLXYY23,
author = {Haoyuan Shi and
Haisong Feng and
Zhenxiao Lu and
Wei Xue and
Congshan Yang and
Zhenyu Yue},
title = {{GRA-GCN:} Dense Granule Protein Prediction in Apicomplexa Protozoa
Through Graph Convolutional Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1963--1970},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3224836},
doi = {10.1109/TCBB.2022.3224836},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ShiFLXYY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ShiLW23,
author = {Xiaofeng Shi and
Cheng Liang and
Hong Wang},
title = {Multiview Robust Graph-Based Clustering for Cancer Subtype Identification},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {544--556},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3143897},
doi = {10.1109/TCBB.2022.3143897},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ShiLW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SiSZRL23,
author = {Jiasheng Si and
Liu Sun and
Deyu Zhou and
Jie Ren and
Lin Li},
title = {Biomedical Argument Mining Based on Sequential Multi-Task Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {864--874},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3173447},
doi = {10.1109/TCBB.2022.3173447},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SiSZRL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SinhaLM23,
author = {Aman Sinha and
Bo{-}Cheng Lai and
Jhih{-}Yong Mai},
title = {A Bin-Based Indexing for Scalable Range Join on Genomic Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2210--2222},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3240196},
doi = {10.1109/TCBB.2023.3240196},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SinhaLM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SiniosoglouASLSGW23,
author = {Ilias Siniosoglou and
Vasileios Argyriou and
Panagiotis G. Sarigiannidis and
Thomas Lagkas and
Antonios Sarigiannidis and
Sotirios K. Goudos and
Shaohua Wan},
title = {Post-Processing Fairness Evaluation of Federated Models: An Unsupervised
Approach in Healthcare},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2518--2529},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3269767},
doi = {10.1109/TCBB.2023.3269767},
timestamp = {Fri, 18 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SiniosoglouASLSGW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SobahyMA23,
author = {Turki M. Sobahy and
Olaa A. Motwalli and
Meshari Alazmi},
title = {AllelePred: {A} Simple Allele Frequencies Ensemble Predictor for Different
Single Nucleotide Variants},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {796--801},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3155659},
doi = {10.1109/TCBB.2022.3155659},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SobahyMA23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SongLL23,
author = {Xuekun Song and
Ke Liang and
Juntao Li},
title = {{WGRLR:} {A} Weighted Group Regularized Logistic Regression for Cancer
Diagnosis and Gene Selection},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1563--1573},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3203167},
doi = {10.1109/TCBB.2022.3203167},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SongLL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SongLWBXW23,
author = {Xueli Song and
Rongpeng Li and
Kaiming Wang and
Yuntong Bai and
Yuzhu Xiao and
Yu{-}Ping Wang},
title = {Joint Sparse Collaborative Regression on Imaging Genetics Study of
Schizophrenia},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1137--1146},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3172289},
doi = {10.1109/TCBB.2022.3172289},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SongLWBXW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SongTYYWDD23,
author = {Jinmiao Song and
Shengwei Tian and
Long Yu and
Qimeng Yang and
Yuanxu Wang and
Qiguo Dai and
Xiaodong Duan},
title = {{ISLMI:} Predicting lncRNA-miRNA Interactions Based on Information
Injection and Second-Order Graph Convolution Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1737--1745},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3215151},
doi = {10.1109/TCBB.2022.3215151},
timestamp = {Wed, 09 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SongTYYWDD23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SoyluS23,
author = {Necla Nisa Soylu and
Emre Sefer},
title = {{BERT2OME:} Prediction of 2{\({'}\)}-O-Methylation Modifications
From {RNA} Sequence by Transformer Architecture Based on {BERT}},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2177--2189},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3237769},
doi = {10.1109/TCBB.2023.3237769},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SoyluS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SpirovM23,
author = {Alexander V. Spirov and
Ekaterina M. Myasnikova},
title = {Problem of Domain/Building Block Preservation in the Evolution of
Biological Macromolecules and Evolutionary Computation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1345--1362},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3175908},
doi = {10.1109/TCBB.2022.3175908},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SpirovM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SteyaertAF23,
author = {Aranka Steyaert and
Pieter Audenaert and
Jan Fostier},
title = {Improved Node and Arc Multiplicity Estimation in De Bruijn Graphs
Using Approximate Inference in Conditional Random Fields},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1995--2006},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3229085},
doi = {10.1109/TCBB.2022.3229085},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SteyaertAF23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SuP23,
author = {Cui Su and
Jun Pang},
title = {Target Control of Asynchronous Boolean Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {707--719},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3133608},
doi = {10.1109/TCBB.2021.3133608},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SuP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SujamolRU23,
author = {S. Sujamol and
Vimina E. R. and
Krishnakumar U.},
title = {Improving miRNA Disease Association Prediction Accuracy Using Integrated
Similarity Information and Deep Autoencoders},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1125--1136},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3195514},
doi = {10.1109/TCBB.2022.3195514},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SujamolRU23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SunJWW23,
author = {Junwei Sun and
Haoping Ji and
Yingcong Wang and
Yanfeng Wang},
title = {Hybrid Projective Synchronization via {PI} Controller Based on {DNA}
Strand Displacement},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1081--1091},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3190397},
doi = {10.1109/TCBB.2022.3190397},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SunJWW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SunPLWYL23,
author = {Jing Sun and
Li Pan and
Bin Li and
Haoyue Wang and
Bo Yang and
Wenbin Li},
title = {A Construction Method of Dynamic Protein Interaction Networks by Using
Relevant Features of Gene Expression Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2790--2801},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3264241},
doi = {10.1109/TCBB.2023.3264241},
timestamp = {Sat, 28 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SunPLWYL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SunTH0L23,
author = {Chang Sun and
Rong Tang and
Jipeng Huang and
Jin{-}Mao Wei and
Jian Liu},
title = {A Deep Neural Network-Based Co-Coding Method to Predict Drug-Protein
Interactions by Analyzing the Feature Consistency Between Drugs and
Proteins},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2200--2209},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3237863},
doi = {10.1109/TCBB.2023.3237863},
timestamp = {Mon, 25 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SunTH0L23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SunWLZY23,
author = {Yi Sun and
Jian Wang and
Hongfei Lin and
Yijia Zhang and
Zhihao Yang},
title = {Knowledge Guided Attention and Graph Convolutional Networks for Chemical-Disease
Relation Extraction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {489--499},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3135844},
doi = {10.1109/TCBB.2021.3135844},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SunWLZY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SureshRU23,
author = {Nikhila T. Suresh and
Vimina E. R. and
Krishnakumar U.},
title = {Topology Driven Analysis of Protein - Protein Interactome for Prioritizing
Key Comorbid Genes via Sub Graph Based Average Path Length Centrality},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {742--751},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3140388},
doi = {10.1109/TCBB.2022.3140388},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SureshRU23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SutantoT23,
author = {Kevin Sutanto and
Marcel Turcotte},
title = {Assessing Global-Local Secondary Structure Fingerprints to Classify
{RNA} Sequences With Deep Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2736--2747},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3118358},
doi = {10.1109/TCBB.2021.3118358},
timestamp = {Wed, 01 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/SutantoT23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/TamirSY23,
author = {Azwad Tamir and
Milad Salem and
Jiann{-}Shiun Yuan},
title = {ProtEC: {A} Transformer Based Deep Learning System for Accurate Annotation
of Enzyme Commission Numbers},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3691--3702},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3311427},
doi = {10.1109/TCBB.2023.3311427},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/TamirSY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Tamura23,
author = {Takeyuki Tamura},
title = {Trimming Gene Deletion Strategies for Growth-Coupled Production in
Constraint-Based Metabolic Networks: TrimGdel},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1540--1549},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3185221},
doi = {10.1109/TCBB.2022.3185221},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Tamura23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Tamura23a,
author = {Takeyuki Tamura},
title = {MetNetComp: Database for Minimal and Maximal Gene-Deletion Strategies
for Growth-Coupled Production of Genome-Scale Metabolic Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3748--3758},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3317837},
doi = {10.1109/TCBB.2023.3317837},
timestamp = {Fri, 08 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/Tamura23a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/TangHK23,
author = {Mengyi Tang and
Kumbit Hwang and
Sung Ha Kang},
title = {StemP: {A} Fast and Deterministic Stem-Graph Approach for {RNA} Secondary
Structure Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3278--3291},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3253049},
doi = {10.1109/TCBB.2023.3253049},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/TangHK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/TangZWZ23,
author = {Chunyan Tang and
Cheng Zhong and
Mian Wang and
Fengfeng Zhou},
title = {{FMGNN:} {A} Method to Predict Compound-Protein Interaction With Pharmacophore
Features and Physicochemical Properties of Amino Acids},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1030--1040},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3172340},
doi = {10.1109/TCBB.2022.3172340},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/TangZWZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/TchendjiYDZ23,
author = {Vianney Kengne Tchendji and
Franklin Ingrid Kamga Youmbi and
Cl{\'{e}}mentin Tayou Djam{\'{e}}gni and
Jerry Lacmou Zeutouo},
title = {A Parallel Tiled and Sparsified Four-Russians Algorithm for Nussinov's
{RNA} Folding},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1795--1806},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3216826},
doi = {10.1109/TCBB.2022.3216826},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/TchendjiYDZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/TharmakulasingamGRF23,
author = {Mukunthan Tharmakulasingam and
Brian Gardner and
Roberto La Ragione and
Anil Fernando},
title = {Rectified Classifier Chains for Prediction of Antibiotic Resistance
From Multi-Labelled Data With Missing Labels},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {625--636},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3148577},
doi = {10.1109/TCBB.2022.3148577},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/TharmakulasingamGRF23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/TianFTY23,
author = {Zhen Tian and
Haichuan Fang and
Zhixia Teng and
Yangdong Ye},
title = {{GOGCN:} Graph Convolutional Network on Gene Ontology for Functional
Similarity Analysis of Genes},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1053--1064},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3181300},
doi = {10.1109/TCBB.2022.3181300},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/TianFTY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/TianZ0ZDYH23,
author = {Liangliang Tian and
Haixi Zhang and
Bin Liu and
Jiaqi Zhang and
Nannan Duan and
Aihong Yuan and
Yingqiu Huo},
title = {{VMF-SSD:} {A} Novel V-Space Based Multi-Scale Feature Fusion {SSD}
for Apple Leaf Disease Detection},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2016--2028},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3229114},
doi = {10.1109/TCBB.2022.3229114},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/TianZ0ZDYH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/TongLH23,
author = {Liyun Tong and
Jinling Liang and
Hong{-}xiang Hu},
title = {Fault Detectability of Asynchronous Switched Boolean Networks: {A}
Set Reachability Approach},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3876--3888},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3326172},
doi = {10.1109/TCBB.2023.3326172},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/TongLH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Tripathi023,
author = {Prasun Chandra Tripathi and
Soumen Bag},
title = {An Attention-Guided {CNN} Framework for Segmentation and Grading of
Glioma Using 3D {MRI} Scans},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1890--1904},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3220902},
doi = {10.1109/TCBB.2022.3220902},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Tripathi023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/TripathiMLCP23,
author = {Asmita Tripathi and
Rajkrishna Mondal and
Tapobrata Lahiri and
Deepak Chaurasiya and
Manoj Kumar Pal},
title = {TemPred: {A} Novel Protein Template Search Engine to Improve Protein
Structure Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2112--2121},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3233846},
doi = {10.1109/TCBB.2022.3233846},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/TripathiMLCP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/TuLCSH23,
author = {Deng{-}Yao Tu and
Peng{-}Chan Lin and
Hsin{-}Hung Chou and
Meng{-}Ru Shen and
Sun{-}Yuan Hsieh},
title = {Slice-Fusion: Reducing False Positives in Liver Tumor Detection for
Mask {R-CNN}},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3267--3277},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3265394},
doi = {10.1109/TCBB.2023.3265394},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/TuLCSH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/TuLLHS23,
author = {Wenhui Tu and
Guang Ling and
Feng Liu and
Fuyan Hu and
Xiangxiang Song},
title = {{GCSTI:} {A} Single-Cell Pseudotemporal Trajectory Inference Method
Based on Graph Compression},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2945--2958},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3266109},
doi = {10.1109/TCBB.2023.3266109},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/TuLLHS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/TunaGYCA23,
author = {Suha Tuna and
Cagri Gulec and
Emrah Yucesan and
Ayse Cirakoglu and
Yelda Tarkan Arguden},
title = {Gene Teams are on the Field: Evaluation of Variants in Gene-Networks
Using High Dimensional Modelling},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2959--2969},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3292245},
doi = {10.1109/TCBB.2023.3292245},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/TunaGYCA23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/TuncayE023,
author = {Erhun Giray Tuncay and
Riza Cenk Erdur and
Tim Conrad},
title = {Parallel Exchange of Randomized SubGraphs for Optimization of Network
Alignment: {PERSONA}},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2064--2077},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3231489},
doi = {10.1109/TCBB.2022.3231489},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/TuncayE023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/UnerKCTC23,
author = {Onur Can Uner and
Halil Ibrahim Kuru and
Ramazan Gokberk Cinbis and
{\"{O}}znur Tastan and
A. Erc{\"{u}}ment {\c{C}}i{\c{c}}ek},
title = {DeepSide: {A} Deep Learning Approach for Drug Side Effect Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {330--339},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3141103},
doi = {10.1109/TCBB.2022.3141103},
timestamp = {Sat, 20 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/UnerKCTC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/VillaverdeRHB23,
author = {Alejandro F. Villaverde and
Elba Raim{\'{u}}ndez{-}{\'{A}}lvarez and
Jan Hasenauer and
Julio R. Banga},
title = {Assessment of Prediction Uncertainty Quantification Methods in Systems
Biology},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1725--1736},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3213914},
doi = {10.1109/TCBB.2022.3213914},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/VillaverdeRHB23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WanJ23,
author = {Yunqi Wan and
Zhenran Jiang},
title = {TransCrispr: Transformer Based Hybrid Model for Predicting CRISPR/Cas9
Single Guide {RNA} Cleavage Efficiency},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1518--1528},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3201631},
doi = {10.1109/TCBB.2022.3201631},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WanJ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangCDM23,
author = {Qingbin Wang and
Kaiyi Chen and
Wanrong Dou and
Yutao Ma},
title = {Cross-Attention Based Multi-Resolution Feature Fusion Model for Self-Supervised
Cervical {OCT} Image Classification},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2541--2554},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3246979},
doi = {10.1109/TCBB.2023.3246979},
timestamp = {Fri, 18 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangCDM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangGQZ0023,
author = {Xiaolin Wang and
Hongli Gao and
Ren Qi and
Ruiqing Zheng and
Xin Gao and
Bin Yu},
title = {scBKAP: {A} Clustering Model for Single-Cell RNA-Seq Data Based on
Bisecting K-Means},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2007--2015},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3230098},
doi = {10.1109/TCBB.2022.3230098},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangGQZ0023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangHW23,
author = {Donglin Wang and
Don Hong and
Qiang Wu},
title = {Attention Deficit Hyperactivity Disorder Classification Based on Deep
Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1581--1586},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3170527},
doi = {10.1109/TCBB.2022.3170527},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangHW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangLP23,
author = {Yueyue Wang and
Xiujuan Lei and
Yi Pan},
title = {Microbe-Disease Association Prediction Using {RGCN} Through Microbe-Drug-Disease
Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3353--3362},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3247035},
doi = {10.1109/TCBB.2023.3247035},
timestamp = {Mon, 29 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/WangLP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangLW23,
author = {Xin Wang and
Jie Li and
Guohua Wang},
title = {MicroRNA Promoter Identification in Human With a Three-level Prediction
Method},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3600--3608},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3305992},
doi = {10.1109/TCBB.2023.3305992},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/WangLW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangLWHCN23,
author = {Huan Wang and
Ruigang Liu and
Baijing Wang and
Yifan Hong and
Ziwen Cui and
Qiufen Ni},
title = {Multitype Perception Method for Drug-Target Interaction Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3489--3498},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3285042},
doi = {10.1109/TCBB.2023.3285042},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/WangLWHCN23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangNG0P23,
author = {Yixin Wang and
Md. Noor{-}A{-}Rahim and
Erry Gunawan and
Yong Liang Guan and
Chueh{-}Loo Poh},
title = {Modelling, Characterization of Data-Dependent and Process-Dependent
Errors in {DNA} Data Storage},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2147--2158},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3233914},
doi = {10.1109/TCBB.2022.3233914},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangNG0P23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangQLL23,
author = {Jinxia Wang and
Liang Qiao and
Haibin Lv and
Zhihan Lv},
title = {Deep Transfer Learning-Based Multi-Modal Digital Twins for Enhancement
and Diagnostic Analysis of Brain {MRI} Image},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2407--2419},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3168189},
doi = {10.1109/TCBB.2022.3168189},
timestamp = {Fri, 18 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangQLL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangSLZXC23,
author = {Huadong Wang and
Jianhui Sun and
Mengya Liu and
Chun{-}Hou Zheng and
Junfeng Xia and
Na Cheng},
title = {frDSM: An Ensemble Predictor With Effective Feature Representation
for Deleterious Synonymous Mutation in Human Genome},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {371--377},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3167468},
doi = {10.1109/TCBB.2022.3167468},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangSLZXC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangW23,
author = {Huanhuan Wang and
Xiang Wu},
title = {{IPP:} An Intelligent Privacy-Preserving Scheme for Detecting Interactions
in Genome Association Studies},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {455--464},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3155774},
doi = {10.1109/TCBB.2022.3155774},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangWLZZLXZ23,
author = {Shanshan Wang and
Ruoyou Wu and
Cheng Li and
Juan Zou and
Ziyao Zhang and
Qiegen Liu and
Yan Xi and
Hairong Zheng},
title = {{PARCEL:} Physics-Based Unsupervised Contrastive Representation Learning
for Multi-Coil {MR} Imaging},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2659--2670},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3213669},
doi = {10.1109/TCBB.2022.3213669},
timestamp = {Sat, 28 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangWLZZLXZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangWS23,
author = {Junlin Wang and
Wenbo Wang and
Yi Shang},
title = {Protein Loop Modeling Using AlphaFold2},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3306--3313},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3264899},
doi = {10.1109/TCBB.2023.3264899},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangWS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangXYWLC23,
author = {Mei{-}Neng Wang and
Xue{-}Jun Xie and
Zhu{-}Hong You and
Leon Wong and
Li{-}Ping Li and
Zhan{-}Heng Chen},
title = {Combining {K} Nearest Neighbor With Nonnegative Matrix Factorization
for Predicting Circrna-Disease Associations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2610--2618},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3180903},
doi = {10.1109/TCBB.2022.3180903},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangXYWLC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangYFZCWC23,
author = {Wei Wang and
Xinhua Yu and
Bo Fang and
Yue Zhao and
Yongyong Chen and
Wei Wei and
Junxin Chen},
title = {Cross-Modality {LGE-CMR} Segmentation Using Image-to-Image Translation
Based Data Augmentation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2367--2375},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3140306},
doi = {10.1109/TCBB.2022.3140306},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangYFZCWC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangYYHZWH23,
author = {Xiaojuan Wang and
Wen Yang and
Yue Yang and
Yizhou He and
Jun Zhang and
Lusheng Wang and
Lun Hu},
title = {{PPISB:} {A} Novel Network-Based Algorithm of Predicting Protein-Protein
Interactions With Mixed Membership Stochastic Blockmodel},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1606--1612},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3196336},
doi = {10.1109/TCBB.2022.3196336},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangYYHZWH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangYYWWC23,
author = {Xingze Wang and
Guoxian Yu and
Zhongmin Yan and
Lin Wan and
Wei Wang and
Lizhen Cui},
title = {Lung Cancer Subtype Diagnosis by Fusing Image-Genomics Data and Hybrid
Deep Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {512--523},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3132292},
doi = {10.1109/TCBB.2021.3132292},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangYYWWC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangZC23,
author = {Hongxiao Wang and
Hao Zheng and
Danny Z. Chen},
title = {{TANGO:} {A} GO-Term Embedding Based Method for Protein Semantic Similarity
Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {694--706},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3143480},
doi = {10.1109/TCBB.2022.3143480},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangZC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangZJS23,
author = {Chao Wang and
Quan Zou and
Ying Ju and
Hua Shi},
title = {Enhancer-FRL: Improved and Robust Identification of Enhancers and
Their Activities Using Feature Representation Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {967--975},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3204365},
doi = {10.1109/TCBB.2022.3204365},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangZJS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangZL23,
author = {Ning Wang and
Jun Zhang and
Bin Liu},
title = {iDRBP-EL: Identifying {DNA-} and {RNA-} Binding Proteins Based on
Hierarchical Ensemble Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {432--441},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3136905},
doi = {10.1109/TCBB.2021.3136905},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangZL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangZLYZ23,
author = {Xinyi Wang and
Mingyang Zhang and
Chunlin Long and
Lin Yao and
Min Zhu},
title = {Self-Attention Based Neural Network for Predicting RNA-Protein Binding
Sites},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1469--1479},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3204661},
doi = {10.1109/TCBB.2022.3204661},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangZLYZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WedellCW23,
author = {Eleanor Wedell and
Yirong Cai and
Tandy J. Warnow},
title = {{SCAMPP:} Scaling Alignment-Based Phylogenetic Placement to Large
Trees},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1417--1430},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3170386},
doi = {10.1109/TCBB.2022.3170386},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WedellCW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WeiCZZFGLQ23,
author = {Ze{-}Gang Wei and
Xu Chen and
Xiao{-}Dan Zhang and
Hao Zhang and
Xing{-}Guo Fan and
Hongyan Gao and
Fei Liu and
Yu Qian},
title = {Comparison of Methods for Biological Sequence Clustering},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2874--2888},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3253138},
doi = {10.1109/TCBB.2023.3253138},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WeiCZZFGLQ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WilliamsTM23,
author = {Lucia Williams and
Alexandru I. Tomescu and
Brendan Mumey},
title = {Flow Decomposition With Subpath Constraints},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {360--370},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3147697},
doi = {10.1109/TCBB.2022.3147697},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WilliamsTM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WitmerTB23,
author = {Adam Witmer and
Rajkumar Theagarajan and
Bir Bhanu},
title = {Triplet-Net Classification of Contiguous Stem Cell Microscopy Images},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2314--2327},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3247957},
doi = {10.1109/TCBB.2023.3247957},
timestamp = {Wed, 12 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WitmerTB23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WuLCSH23,
author = {Tzu{-}Hsuan Wu and
Peng{-}Chan Lin and
Hsin{-}Hung Chou and
Meng{-}Ru Shen and
Sun{-}Yuan Hsieh},
title = {Pathogenicity Prediction of Single Amino Acid Variants With Machine
Learning Model Based on Protein Structural Energies},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {606--615},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3139048},
doi = {10.1109/TCBB.2021.3139048},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WuLCSH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WuM23,
author = {Wenming Wu and
Xiaoke Ma},
title = {Network-Based Structural Learning Nonnegative Matrix Factorization
Algorithm for Clustering of scRNA-Seq Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {566--575},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3161131},
doi = {10.1109/TCBB.2022.3161131},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WuM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WuTSX23,
author = {Tianyu Wu and
Yang Tang and
Qiyu Sun and
Luolin Xiong},
title = {Molecular Joint Representation Learning via Multi-Modal Information
of {SMILES} and Graphs},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3044--3055},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3253862},
doi = {10.1109/TCBB.2023.3253862},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WuTSX23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WuW00WL23,
author = {Kaitao Wu and
Lexiang Wang and
Bo Liu and
Yang Liu and
Yadong Wang and
Junyi Li},
title = {{PSPGO:} Cross-Species Heterogeneous Network Propagation for Protein
Function Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1713--1724},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3215257},
doi = {10.1109/TCBB.2022.3215257},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WuW00WL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WuZHM23,
author = {Wenming Wu and
Wensheng Zhang and
Weimin Hou and
Xiaoke Ma},
title = {Multi-View Clustering With Graph Learning for scRNA-Seq Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3535--3546},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3298334},
doi = {10.1109/TCBB.2023.3298334},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/WuZHM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/XiZGL023,
author = {Wen{-}Yu Xi and
Feng Zhou and
Ying{-}Lian Gao and
Jin{-}Xing Liu and
Chun{-}Hou Zheng},
title = {{LDCMFC:} Predicting Long Non-Coding {RNA} and Disease Association
Using Collaborative Matrix Factorization Based on Correntropy},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1774--1782},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3215194},
doi = {10.1109/TCBB.2022.3215194},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/XiZGL023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/XuDZLJZWQ23,
author = {Wuli Xu and
Lei Duan and
Huiru Zheng and
Jesse Li{-}Ling and
Weipeng Jiang and
Yidan Zhang and
Tingting Wang and
Ruiqi Qin},
title = {An Integrative Disease Information Network Approach to Similar Disease
Detection},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2724--2735},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3110127},
doi = {10.1109/TCBB.2021.3110127},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/XuDZLJZWQ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/XuXWZX23,
author = {Xiaolong Xu and
Haoyan Xu and
Liying Wang and
Yuanyuan Zhang and
Fu Xiao},
title = {Hygeia: {A} Multilabel Deep Learning-Based Classification Method for
Imbalanced Electrocardiogram Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2480--2493},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3176905},
doi = {10.1109/TCBB.2022.3176905},
timestamp = {Mon, 21 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/XuXWZX23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/XuYL023,
author = {Jie Xu and
Guanxue Yang and
Guohai Liu and
Hui Liu},
title = {Inferring Gene Regulatory Networks via Ensemble Path Consistency Algorithm
Based on Conditional Mutual Information},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1807--1816},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3220581},
doi = {10.1109/TCBB.2022.3220581},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/XuYL023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/XuanZCZJZN23,
author = {Ping Xuan and
Yue Zhao and
Hui Cui and
Linyun Zhan and
Qiangguo Jin and
Tiangang Zhang and
Toshiya Nakaguchi},
title = {Semantic Meta-Path Enhanced Global and Local Topology Learning for
lncRNA-Disease Association Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1480--1491},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3209571},
doi = {10.1109/TCBB.2022.3209571},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/XuanZCZJZN23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YanGJZ23,
author = {Ke Yan and
Xinlu Guo and
Zhiwei Ji and
Xiaokang Zhou},
title = {Deep Transfer Learning for Cross-Species Plant Disease Diagnosis Adapting
Mixed Subdomains},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2555--2564},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3135882},
doi = {10.1109/TCBB.2021.3135882},
timestamp = {Fri, 18 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YanGJZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YanLWGXL23,
author = {Ke Yan and
Hongwu Lv and
Jie Wen and
Yichen Guo and
Yong Xu and
Bin Liu},
title = {PreTP-Stack: Prediction of Therapeutic Peptides Based on the Stacked
Ensemble Learing},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1337--1344},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3183018},
doi = {10.1109/TCBB.2022.3183018},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YanLWGXL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YangFYW23,
author = {Chengzhuan Yang and
Lincong Fang and
Qian Yu and
Hui Wei},
title = {A Learning Robust and Discriminative Shape Descriptor for Plant Species
Identification},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {39--51},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3148463},
doi = {10.1109/TCBB.2022.3148463},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YangFYW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YangHHCL23,
author = {Cheng{-}Hong Yang and
Hsiu{-}Chen Huang and
Ming{-}Feng Hou and
Li{-}Yeh Chuang and
Yu{-}Da Lin},
title = {Fuzzy-Based Multiobjective Multifactor Dimensionality Reduction for
Epistasis Analysis},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {378--387},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3144303},
doi = {10.1109/TCBB.2022.3144303},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YangHHCL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YangLCXDD23,
author = {Jing Yang and
Zhengshu Lu and
Xu Chen and
Deling Xu and
Dewu Ding and
Yanrui Ding},
title = {GCNA-Cluster: {A} Gene Co-Expression Network Alignment to Cluster
Cancer Patients Algorithm for Identifying Subtypes of Pancreatic Ductal
Adenocarcinoma},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3556--3566},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3300102},
doi = {10.1109/TCBB.2023.3300102},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/YangLCXDD23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YangNLSLZZ23,
author = {Xixi Yang and
Zhangming Niu and
Yuansheng Liu and
Bosheng Song and
Weiqiang Lu and
Li Zeng and
Xiangxiang Zeng},
title = {Modality-DTA: Multimodality Fusion Strategy for Drug-Target Affinity
Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1200--1210},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3205282},
doi = {10.1109/TCBB.2022.3205282},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YangNLSLZZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YangXLFZGS23,
author = {Xiaohui Yang and
Zi{-}Jun Xi and
Jie{-}Ping Li and
Xin{-}Lei Feng and
Xiao{-}Hong Zhu and
Si{-}Yi Guo and
Chun{-}Peng Song},
title = {Deep Transfer Learning-Based Multi-Object Detection for Plant Stomata
Phenotypic Traits Intelligent Recognition},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {321--329},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3137810},
doi = {10.1109/TCBB.2021.3137810},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YangXLFZGS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YangYC23,
author = {Xinxing Yang and
Genke Yang and
Jian Chu},
title = {The Neural Metric Factorization for Computational Drug Repositioning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {731--741},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3144429},
doi = {10.1109/TCBB.2022.3144429},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YangYC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YangYC23a,
author = {Xinxing Yang and
Genke Yang and
Jian Chu},
title = {The Computational Drug Repositioning Without Negative Sampling},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1506--1517},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3212051},
doi = {10.1109/TCBB.2022.3212051},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YangYC23a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YangYC23b,
author = {Xinxing Yang and
Genke Yang and
Jian Chu},
title = {Self-Supervised Learning for Label Sparsity in Computational Drug
Repositioning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3245--3256},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3254163},
doi = {10.1109/TCBB.2023.3254163},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YangYC23b.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YangZCYLLC23,
author = {Jingbo Yang and
Denan Zhang and
Yiyang Cai and
Kexin Yu and
Mingming Li and
Lei Liu and
Xiujie Chen},
title = {Computational Prediction of Drug Phenotypic Effects Based on Substructure-Phenotype
Associations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {256--265},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3155453},
doi = {10.1109/TCBB.2022.3155453},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YangZCYLLC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YaoF23,
author = {Yin Yao and
Martin C. Frith},
title = {Improved DNA-Versus-Protein Homology Search for Protein Fossils},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1691--1699},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3177855},
doi = {10.1109/TCBB.2022.3177855},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YaoF23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YeZL23,
author = {Qing Ye and
Xiaolong Zhang and
Xiaoli Lin},
title = {Drug-Target Interaction Prediction via Graph Auto-Encoder and Multi-Subspace
Deep Neural Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2647--2658},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3206907},
doi = {10.1109/TCBB.2022.3206907},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YeZL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YuPLZZZ23,
author = {Zhong{-}Ze Yu and
Chunxiang Peng and
Jun Liu and
Biao Zhang and
Xiao{-}Gen Zhou and
Gui{-}Jun Zhang},
title = {DomBpred: Protein Domain Boundary Prediction Based on Domain-Residue
Clustering Using Inter-Residue Distance},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {912--922},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3175905},
doi = {10.1109/TCBB.2022.3175905},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YuPLZZZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YuQYWS23,
author = {Chunjiang Yu and
Xin Qi and
Wenying Yan and
Wentao Wu and
Bairong Shen},
title = {Next-Generation Sequencing Markup Language {(NGSML):} {A} Medium for
the Representation and Exchange of {NGS} Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {576--585},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3144170},
doi = {10.1109/TCBB.2022.3144170},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YuQYWS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YuZHCY23,
author = {Qiang Yu and
Xiao Zhang and
Yana Hu and
Shengpin Chen and
Liying Yang},
title = {A Method for Predicting {DNA} Motif Length Based On Deep Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {61--73},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3158471},
doi = {10.1109/TCBB.2022.3158471},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YuZHCY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YueXCWLZ23,
author = {Zhenyu Yue and
Ying Xiang and
Guojun Chen and
Xiaosong Wang and
Ke Li and
Youhua Zhang},
title = {PredinID: Predicting Pathogenic Inframe Indels in Human Through Graph
Convolution Neural Network With Graph Sampling Technique},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3226--3233},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3266232},
doi = {10.1109/TCBB.2023.3266232},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YueXCWLZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZahariasSW23,
author = {Paul Zaharias and
Vladimir Smirnov and
Tandy J. Warnow},
title = {Large-Scale Multiple Sequence Alignment and the Maximum Weight Trace
Alignment Merging Problem},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1700--1712},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3191848},
doi = {10.1109/TCBB.2022.3191848},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZahariasSW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZamanIJS23,
author = {Ahmed Bin Zaman and
Toki Tahmid Inan and
Kenneth A. De Jong and
Amarda Shehu},
title = {Adaptive Stochastic Optimization to Improve Protein Conformation Sampling},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2759--2771},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3134103},
doi = {10.1109/TCBB.2021.3134103},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZamanIJS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangFSXLG23,
author = {Huizhe Zhang and
Juntao Fang and
Yuping Sun and
Guobo Xie and
Zhiyi Lin and
Guosheng Gu},
title = {Predicting miRNA-Disease Associations via Node-Level Attention Graph
Auto-Encoder},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1308--1318},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3170843},
doi = {10.1109/TCBB.2022.3170843},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangFSXLG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangGLXC23,
author = {Zhiming Zhang and
Shangce Gao and
Zhenyu Lei and
Runqun Xiong and
Jiujun Cheng},
title = {Pareto Dominance Archive and Coordinated Selection Strategy-Based
Many-Objective Optimizer for Protein Structure Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2328--2340},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3247025},
doi = {10.1109/TCBB.2023.3247025},
timestamp = {Fri, 22 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangGLXC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangGLYSY23,
author = {Ying Zhang and
Fang Ge and
Fuyi Li and
Xibei Yang and
Jiangning Song and
Dong{-}Jun Yu},
title = {Prediction of Multiple Types of {RNA} Modifications via Biological
Language Model},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3205--3214},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3283985},
doi = {10.1109/TCBB.2023.3283985},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangGLYSY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangJ23,
author = {Shengli Zhang and
Yuanyuan Jing},
title = {PreVFs-RG: {A} Deep Hybrid Model for Identifying Virulence Factors
Based on Residual Block and Gated Recurrent Unit},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1926--1934},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3223038},
doi = {10.1109/TCBB.2022.3223038},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangJ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangL23,
author = {Wenxiang Zhang and
Bin Liu},
title = {iSnoDi-MDRF: Identifying snoRNA-Disease Associations Based on Multiple
Biological Data by Ranking Framework},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3013--3019},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3258448},
doi = {10.1109/TCBB.2023.3258448},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangLJFLZY23,
author = {Baoquan Zhang and
Chuyao Luo and
Hao Jiang and
Shanshan Feng and
Xutao Li and
Bowen Zhang and
Yunming Ye},
title = {Adaptive Transfer of Graph Neural Networks for Few-Shot Molecular
Property Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3863--3875},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3327452},
doi = {10.1109/TCBB.2023.3327452},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangLJFLZY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangSXCWWYSL23,
author = {Hao Zhang and
Honglei Song and
Xiaoming Xu and
Qixin Chang and
Mingkai Wang and
Yanjie Wei and
Zekun Yin and
Bertil Schmidt and
Weiguo Liu},
title = {RabbitFX: Efficient Framework for {FASTA/Q} File Parsing on Modern
Multi-Core Platforms},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {2341--2348},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3219114},
doi = {10.1109/TCBB.2022.3219114},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangSXCWWYSL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangWLZLWL23,
author = {Xiaoshuai Zhang and
Lixin Wang and
Hucheng Liu and
Xiaofeng Zhang and
Bo Liu and
Yadong Wang and
Junyi Li},
title = {Prot2GO: Predicting {GO} Annotations From Protein Sequences and Interactions},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2772--2780},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3139841},
doi = {10.1109/TCBB.2021.3139841},
timestamp = {Wed, 15 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangWLZLWL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangXJQCQLW23,
author = {Yuanpeng Zhang and
Kaijian Xia and
Yizhang Jiang and
Pengjiang Qian and
Weiwei Cai and
Chengyu Qiu and
Khin Wee Lai and
Dongrui Wu},
title = {Multi-Modality Fusion {\&} Inductive Knowledge Transfer Underlying
Non-Sparse Multi-Kernel Learning and Distribution Adaption},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {4},
pages = {2387--2397},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3142748},
doi = {10.1109/TCBB.2022.3142748},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangXJQCQLW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangXWWYYGFH23,
author = {Qinhu Zhang and
Youhong Xu and
Siguo Wang and
Yong Wu and
Yuannong Ye and
Chang{-}An Yuan and
Valeriya V. Gribova and
Vladimir Fedorovich Filaretov and
De{-}Shuang Huang},
title = {Using Fully Convolutional Network to Locate Transcription Factor Binding
Sites Based on {DNA} Sequence and Conservation Information},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2690--2699},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3219831},
doi = {10.1109/TCBB.2022.3219831},
timestamp = {Sat, 28 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangXWWYYGFH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangYXGZ23,
author = {Hao Zhang and
Chuanxu Yan and
Yewei Xia and
Jihong Guan and
Shuigeng Zhou},
title = {Causal Gene Identification Using Non-Linear Regression-Based Independence
Tests},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {185--195},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3149864},
doi = {10.1109/TCBB.2022.3149864},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangYXGZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangZLH23,
author = {Han Zhang and
Zexuan Zhu and
Hui Li and
Shan He},
title = {Network Biomarker Detection From Gene Co-Expression Network Using
Gaussian Mixture Model Clustering},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3523--3534},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3297388},
doi = {10.1109/TCBB.2023.3297388},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangZLH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangZLY23,
author = {Jian Zhang and
Feng Zhou and
Xingchen Liang and
Guifu Yang},
title = {{SCAMPER:} Accurate Type-Specific Prediction of Calcium-Binding Residues
Using Sequence-Derived Features},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1406--1416},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3173437},
doi = {10.1109/TCBB.2022.3173437},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangZLY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangZZCLZ23,
author = {Fan Zhang and
Yawei Zhang and
Xiaoke Zhu and
Xiaopan Chen and
Fuhao Lu and
Xinhong Zhang},
title = {DeepSG2PPI: {A} Protein-Protein Interaction Prediction Method Based
on Deep Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2907--2919},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3268661},
doi = {10.1109/TCBB.2023.3268661},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangZZCLZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhaoBLZROX23,
author = {Bo Zhao and
Jun Bai and
Chen Li and
Jianfei Zhang and
Wenge Rong and
Yuanxin Ouyang and
Zhang Xiong},
title = {Enhancing Biomedical ReQA With Adversarial Hard In-Batch Negative
Samples},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2933--2944},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3261315},
doi = {10.1109/TCBB.2023.3261315},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhaoBLZROX23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhaoDNYLW23,
author = {Haochen Zhao and
Guihua Duan and
Peng Ni and
Cheng Yan and
Yaohang Li and
Jianxin Wang},
title = {RNPredATC: {A} Deep Residual Learning-Based Model With Applications
to the Prediction of Drug-ATC Code Association},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2712--2723},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3088256},
doi = {10.1109/TCBB.2021.3088256},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhaoDNYLW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhaoDYCLW23,
author = {Qichang Zhao and
Guihua Duan and
Mengyun Yang and
Zhongjian Cheng and
Yaohang Li and
Jianxin Wang},
title = {AttentionDTA: Drug-Target Binding Affinity Prediction by Sequence-Based
Deep Learning With Attention Mechanism},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {852--863},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3170365},
doi = {10.1109/TCBB.2022.3170365},
timestamp = {Mon, 01 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhaoDYCLW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhaoDZLDW23,
author = {Haochen Zhao and
Ruihong Du and
Ruikang Zhou and
Suning Li and
Guihua Duan and
Jianxin Wang},
title = {{SCN-MLTPP:} {A} Multi-Label Classifier for Predicting Therapeutic
Properties of Peptides Using the Stacked Capsule Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3715--3724},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3315330},
doi = {10.1109/TCBB.2023.3315330},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/ZhaoDZLDW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhaoDZZL023,
author = {Qichang Zhao and
Guihua Duan and
Haochen Zhao and
Kai Zheng and
Yaohang Li and
Jianxin Wang},
title = {{GIFDTI:} Prediction of Drug-Target Interactions Based on Global Molecular
and Intermolecular Interaction Representation Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1943--1952},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3225423},
doi = {10.1109/TCBB.2022.3225423},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhaoDZZL023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhaoLYNZ23,
author = {Huan Zhao and
Zhengwei Li and
Zhu{-}Hong You and
Ru Nie and
Tangbo Zhong},
title = {Predicting Mirna-Disease Associations Based on Neighbor Selection
Graph Attention Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1298--1307},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3204726},
doi = {10.1109/TCBB.2022.3204726},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/ZhaoLYNZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhaoLZZ23,
author = {Qing Zhao and
Jianqiang Li and
Linna Zhao and
Zhichao Zhu},
title = {Knowledge Guided Feature Aggregation for the Prediction of Chronic
Obstructive Pulmonary Disease With Chinese EMRs},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3343--3352},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3198798},
doi = {10.1109/TCBB.2022.3198798},
timestamp = {Tue, 30 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/ZhaoLZZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhaoSSHG23,
author = {Hongfei Zhao and
Cunqi Shao and
Zhiguo Shi and
Shibo He and
Zhefeng Gong},
title = {The Intrinsic Similarity of Topological Structure in Biological Neural
Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3292--3305},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3279443},
doi = {10.1109/TCBB.2023.3279443},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhaoSSHG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhaoYJHSH23,
author = {Weizhong Zhao and
Wenjie Yao and
Xingpeng Jiang and
Tingting He and
Chuan Shi and
Xiaohua Hu},
title = {An Explainable Framework for Predicting Drug-Side Effect Associations
via Meta-Path-Based Feature Learning in Heterogeneous Information
Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3635--3647},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3308094},
doi = {10.1109/TCBB.2023.3308094},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/ZhaoYJHSH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhaoYY023,
author = {Minghua Zhao and
Min Yuan and
Yaning Yang and
Steven X. Xu},
title = {{CPGL:} Prediction of Compound-Protein Interaction by Integrating
Graph Attention Network With Long Short-Term Memory Neural Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1935--1942},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3225296},
doi = {10.1109/TCBB.2022.3225296},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhaoYY023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhengCWWZ23,
author = {Yanfen Zheng and
Ben Cao and
Jieqiong Wu and
Bin Wang and
Qiang Zhang},
title = {High Net Information Density {DNA} Data Storage by the {MOPE} Encoding
Algorithm},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {2992--3000},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3263521},
doi = {10.1109/TCBB.2023.3263521},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhengCWWZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhengSZ23,
author = {Vicky Zheng and
Ahmet Erdem Sariy{\"{u}}ce and
Jaroslaw Zola},
title = {Identifying Taxonomic Units in Metagenomic {DNA} Streams on Mobile
Devices},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1092--1103},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3172661},
doi = {10.1109/TCBB.2022.3172661},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/ZhengSZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhouLLTWH23,
author = {Xingxing Zhou and
Ming Ling and
Qingde Lin and
Shidi Tang and
Jiansheng Wu and
Haifeng Hu},
title = {Effectiveness Analysis of Multiple Initial States Simulated Annealing
Algorithm, a Case Study on the Molecular Docking Tool AutoDock Vina},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {6},
pages = {3830--3841},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3323552},
doi = {10.1109/TCBB.2023.3323552},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/ZhouLLTWH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhouYZSL23,
author = {Feng Zhou and
Meng{-}Meng Yin and
Jing{-}Xiu Zhao and
Junliang Shang and
Jin{-}Xing Liu},
title = {A Method Based On Dual-Network Information Fusion to Predict MiRNA-Disease
Associations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {52--60},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2021.3133006},
doi = {10.1109/TCBB.2021.3133006},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhouYZSL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhuL23,
author = {Xinyu Zhu and
Weiming Lu},
title = {Multi-Label Classification With Dual Tail-Node Augmentation for Drug
Repositioning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3068--3079},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3292883},
doi = {10.1109/TCBB.2023.3292883},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhuL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhuLJLYYHZ23,
author = {Xianyu Zhu and
Jinjiang Li and
Runchang Jia and
Bin Liu and
Zhuohan Yao and
Aihong Yuan and
Yingqiu Huo and
Haixi Zhang},
title = {LAD-Net: {A} Novel Light Weight Model for Early Apple Leaf Pests and
Diseases Classification},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1156--1169},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3191854},
doi = {10.1109/TCBB.2022.3191854},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhuLJLYYHZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AM22,
author = {Malik S. A. and
Ajaz Hussain Mir},
title = {Synchronization of Fractional Order Neurons in Presence of Noise},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1887--1896},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3040954},
doi = {10.1109/TCBB.2020.3040954},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AbbasTC22,
author = {Zeeshan Abbas and
Hilal Tayara and
Kil To Chong},
title = {ZayyuNet - {A} Unified Deep Learning Model for the Identification
of Epigenetic Modifications Using Raw Genomic Sequences},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2533--2544},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3083789},
doi = {10.1109/TCBB.2021.3083789},
timestamp = {Sun, 24 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AbbasTC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AbbaszadehAKB22,
author = {Omid Abbaszadeh and
Ali Azarpeyvand and
Alireza Khanteymoori and
Abbas Bahari},
title = {Data-Driven and Knowledge-Based Algorithms for Gene Network Reconstruction
on High-Dimensional Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1545--1557},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3034861},
doi = {10.1109/TCBB.2020.3034861},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AbbaszadehAKB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AbdollahiLC22,
author = {Sina Abdollahi and
Peng{-}Chan Lin and
Jung{-}Hsien Chiang},
title = {DiaDeL: An Accurate Deep Learning-Based Model With Mutational Signatures
for Predicting Metastasis Stage and Cancer Types},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1336--1343},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3115504},
doi = {10.1109/TCBB.2021.3115504},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AbdollahiLC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AcharyaCP22,
author = {Sudipta Acharya and
Laizhong Cui and
Yi Pan},
title = {A Refined 3-in-1 Fused Protein Similarity Measure: Application in
Threshold-Free Hub Detection},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {192--206},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.2973563},
doi = {10.1109/TCBB.2020.2973563},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AcharyaCP22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AdnanZHR22,
author = {Nahim Adnan and
Maryam Zand and
Tim Hui{-}Ming Huang and
Jianhua Ruan},
title = {Construction and Evaluation of Robust Interpretation Models for Breast
Cancer Metastasis Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1344--1353},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3120673},
doi = {10.1109/TCBB.2021.3120673},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AdnanZHR22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AghamiriD22,
author = {Sara Sadat Aghamiri and
Franck Delaplace},
title = {TaBooN Boolean Network Synthesis Based on Tabu Search},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2499--2511},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3063817},
doi = {10.1109/TCBB.2021.3063817},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AghamiriD22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AhmedRHRIA22,
author = {Sabit Ahmed and
Afrida Rahman and
Md. Al Mehedi Hasan and
Julia Rahman and
Md. Khaled Ben Islam and
Shamim Ahmad},
title = {predML-Site: Predicting Multiple Lysine {PTM} Sites With Optimal Feature
Representation and Data Imbalance Minimization},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3624--3634},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3114349},
doi = {10.1109/TCBB.2021.3114349},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AhmedRHRIA22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AjmalM22,
author = {Hamda Ajmal and
Michael G. Madden},
title = {Dynamic Bayesian Network Learning to Infer Sparse Models From Time
Series Gene Expression Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2794--2805},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3092879},
doi = {10.1109/TCBB.2021.3092879},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AjmalM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AkessonSWH22,
author = {Mattias {\AA}kesson and
Prashant Singh and
Fredrik Wrede and
Andreas Hellander},
title = {Convolutional Neural Networks as Summary Statistics for Approximate
Bayesian Computation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3353--3365},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3108695},
doi = {10.1109/TCBB.2021.3108695},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AkessonSWH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AkhterKCVADS22,
author = {Nasrin Akhter and
Kazi Lutful Kabir and
Gopinath Chennupati and
Raviteja Vangara and
Boian S. Alexandrov and
Hristo N. Djidjev and
Amarda Shehu},
title = {Improved Protein Decoy Selection via Non-Negative Matrix Factorization},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1670--1682},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3049088},
doi = {10.1109/TCBB.2020.3049088},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AkhterKCVADS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AlazmiM22,
author = {Meshari Alazmi and
Olaa A. Motwalli},
title = {Immuno-Informatics Based Peptides: An Approach for Vaccine Development
Against Outer Membrane Proteins of Pseudomonas Genus},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {966--973},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3032651},
doi = {10.1109/TCBB.2020.3032651},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AlazmiM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Aleb22,
author = {Nassima Aleb},
title = {A Mutual Attention Model for Drug Target Binding Affinity Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3224--3232},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3121275},
doi = {10.1109/TCBB.2021.3121275},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Aleb22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AliATC22,
author = {Syed Danish Ali and
Waleed Alam and
Hilal Tayara and
Kil To Chong},
title = {Identification of Functional piRNAs Using a Convolutional Neural Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1661--1669},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3034313},
doi = {10.1109/TCBB.2020.3034313},
timestamp = {Sun, 24 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AliATC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AlzahraniASDFM22,
author = {Salma Alzahrani and
Christopher Applegate and
David Swarbreck and
Tamas Dalmay and
Leighton Folkes and
Vincent Moulton},
title = {Degradome Assisted Plant MicroRNA Prediction Under Alternative Annotation
Criteria},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3374--3383},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3115023},
doi = {10.1109/TCBB.2021.3115023},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AlzahraniASDFM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AnTW22,
author = {Ying An and
Kun Tang and
Jianxin Wang},
title = {Time-Aware Multi-Type Data Fusion Representation Learning Framework
for Risk Prediction of Cardiovascular Diseases},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3725--3734},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3118418},
doi = {10.1109/TCBB.2021.3118418},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AnTW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AokiTO22,
author = {Raquel Aoki and
Frederick Tung and
Gabriel L. Oliveira},
title = {Heterogeneous Multi-Task Learning With Expert Diversity},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3093--3102},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2022.3175456},
doi = {10.1109/TCBB.2022.3175456},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AokiTO22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ArifKAKGKY22,
author = {Muhammad Arif and
Muhammad Kabir and
Saeed Ahmed and
Abid Khan and
Fang Ge and
Adel Khelifi and
Dong{-}Jun Yu},
title = {DeepCPPred: {A} Deep Learning Framework for the Discrimination of
Cell-Penetrating Peptides and Their Uptake Efficiencies},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2749--2759},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3102133},
doi = {10.1109/TCBB.2021.3102133},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ArifKAKGKY22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AryaS22,
author = {Nikhilanand Arya and
Sriparna Saha},
title = {Multi-Modal Classification for Human Breast Cancer Prognosis Prediction:
Proposal of Deep-Learning Based Stacked Ensemble Model},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {1032--1041},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3018467},
doi = {10.1109/TCBB.2020.3018467},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AryaS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AryaS22a,
author = {Nikhilanand Arya and
Sriparna Saha},
title = {Generative Incomplete Multi-View Prognosis Predictor for Breast Cancer:
{GIMPP}},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2252--2263},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3090458},
doi = {10.1109/TCBB.2021.3090458},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AryaS22a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AscensionA22,
author = {Alex M. Ascensi{\'{o}}n and
Marcos J. Ara{\'{u}}zo{-}Bravo},
title = {BigMPI4py: Python Module for Parallelization of Big Data Objects Discloses
Germ Layer Specific {DNA} Demethylation Motifs},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1507--1522},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3043979},
doi = {10.1109/TCBB.2020.3043979},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AscensionA22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BaeMCY22,
author = {Ho Bae and
Seonwoo Min and
Hyun{-}Soo Choi and
Sungroh Yoon},
title = {{DNA} Privacy: Analyzing Malicious {DNA} Sequences Using Deep Neural
Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {888--898},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3017191},
doi = {10.1109/TCBB.2020.3017191},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BaeMCY22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BankapurP22,
author = {Sanjay S. Bankapur and
Nagamma Patil},
title = {An Effective Multi-Label Protein Sub-Chloroplast Localization Prediction
by Skipped-Grams of Evolutionary Profiles Using Deep Neural Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1449--1458},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3037465},
doi = {10.1109/TCBB.2020.3037465},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BankapurP22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BargerA22,
author = {Jacob Barger and
Badri Adhikari},
title = {New Labeling Methods for Deep Learning Real-Valued Inter-Residue Distance
Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3586--3594},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3115053},
doi = {10.1109/TCBB.2021.3115053},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BargerA22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BarshaiAO22,
author = {Mira Barshai and
Alice Aubert and
Yaron Orenstein},
title = {G4detector: Convolutional Neural Network to Predict {DNA} G-Quadruplexes},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {1946--1955},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3073595},
doi = {10.1109/TCBB.2021.3073595},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BarshaiAO22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BattistellaVSEL22,
author = {Enzo Battistella and
Maria Vakalopoulou and
Roger Sun and
Th{\'{e}}o Estienne and
Marvin Lerousseau and
Sergey Nikolaev and
Emilie Alvarez Andres and
Alexandre Carr{\'{e}} and
St{\'{e}}phane Niyoteka and
Charlotte Robert and
Nikos Paragios and
Eric Deutsch},
title = {{COMBING:} Clustering in Oncology for Mathematical and Biological
Identification of Novel Gene Signatures},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3317--3331},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3123910},
doi = {10.1109/TCBB.2021.3123910},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BattistellaVSEL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BernasconiCMC22,
author = {Anna Bernasconi and
Arif Canakoglu and
Marco Masseroli and
Stefano Ceri},
title = {{META-BASE:} {A} Novel Architecture for Large-Scale Genomic Metadata
Integration},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {543--557},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.2998954},
doi = {10.1109/TCBB.2020.2998954},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BernasconiCMC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BhadraMSZ22,
author = {Tapas Bhadra and
Saurav Mallik and
Amir Sohel and
Zhongming Zhao},
title = {Unsupervised Feature Selection Using an Integrated Strategy of Hierarchical
Clustering With Singular Value Decomposition: An Integrative Biomarker
Discovery Method With Application to Acute Myeloid Leukemia},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1354--1364},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3110989},
doi = {10.1109/TCBB.2021.3110989},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BhadraMSZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BhattSSRDSSS22,
author = {Sachin Bhatt and
Prithvi Singh and
Archana Sharma and
Arpita Rai and
Ravins Dohare and
Shweta Sankhwar and
Akash Sharma and
Mansoor Ali Syed},
title = {Deciphering Key Genes and miRNAs Associated With Hepatocellular Carcinoma
via Network-Based Approach},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {843--853},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3016781},
doi = {10.1109/TCBB.2020.3016781},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BhattSSRDSSS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BiCYJZZ22,
author = {Hui Bi and
Shumei Cao and
Hanying Yan and
Zhongyi Jiang and
Jun Zhang and
Ling Zou},
title = {Resting State Functional Connectivity Analysis During General Anesthesia:
{A} High-Density {EEG} Study},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {3--13},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3091000},
doi = {10.1109/TCBB.2021.3091000},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BiCYJZZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BiZWD22,
author = {Jingshu Bi and
Yuanjie Zheng and
Chongjing Wang and
Yanhui Ding},
title = {An Attention Based Bidirectional {LSTM} Method to Predict the Binding
of {TCR} and Epitope},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3272--3280},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3115353},
doi = {10.1109/TCBB.2021.3115353},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BiZWD22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BonginiNTMSSBG22,
author = {Pietro Bongini and
Neri Niccolai and
Alfonso Trezza and
Guido Mangiavacchi and
Annalisa Santucci and
Ottavia Spiga and
Monica Bianchini and
Simone Gardini},
title = {Structural Bioinformatic Survey of Protein-Small Molecule Interfaces
Delineates the Role of Glycine in Surface Pocket Formation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1881--1886},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3033384},
doi = {10.1109/TCBB.2020.3033384},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BonginiNTMSSBG22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BozaPBV22,
author = {Vladim{\'{\i}}r Boza and
Peter Peres{\'{\i}}ni and
Brona Brejov{\'{a}} and
Tom{\'{a}}s Vinar},
title = {Dynamic Pooling Improves Nanopore Base Calling Accuracy},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3416--3424},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3128366},
doi = {10.1109/TCBB.2021.3128366},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/BozaPBV22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BuiYSAHWOO22,
author = {Lien A. Bui and
Dacosta Yeboah and
Louis Steinmeister and
Sima Azizi and
Daniel B. Hier and
Donald C. Wunsch and
Gayla R. Olbricht and
Tayo Obafemi{-}Ajayi},
title = {Heterogeneity in Blood Biomarker Trajectories After Mild {TBI} Revealed
by Unsupervised Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1365--1378},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3091972},
doi = {10.1109/TCBB.2021.3091972},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BuiYSAHWOO22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/CaceresMHRCST22,
author = {Manuel C{\'{a}}ceres and
Brendan Mumey and
Edin Husic and
Romeo Rizzi and
Massimo Cairo and
Kristoffer Sahlin and
Alexandru I. Tomescu},
title = {Safety in Multi-Assembly via Paths Appearing in All Path Covers of
a {DAG}},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3673--3684},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3131203},
doi = {10.1109/TCBB.2021.3131203},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/CaceresMHRCST22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/CaiLS22,
author = {Zhipeng Cai and
Min Li and
Pavel Skums},
title = {Guest Editors' Introduction to the Special Section on Bioinformatics
Research and Applications},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {166--167},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3123699},
doi = {10.1109/TCBB.2021.3123699},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/CaiLS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/CaiNS22,
author = {Zhipeng Cai and
Giri Narasimhan and
Pavel Skums},
title = {Guest Editors' Introduction to the Special Section on Bioinformatics
Research and Applications},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {207--208},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3121736},
doi = {10.1109/TCBB.2021.3121736},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/CaiNS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/CamilloN22,
author = {Barbara Di Camillo and
Giuseppe Nicosia},
title = {Guest Editorial: Deep Learning For Genomics},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {95--96},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3080094},
doi = {10.1109/TCBB.2021.3080094},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/CamilloN22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/CaoIZWZW22,
author = {Ben Cao and
Xue Ii and
Xiaokang Zhang and
Bin Wang and
Qiang Zhang and
Xiaopeng Wei},
title = {Designing Uncorrelated Address Constrain for {DNA} Storage by {DMVO}
Algorithm},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {866--877},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3011582},
doi = {10.1109/TCBB.2020.3011582},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/CaoIZWZW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/CauseyLCDWQSMGH22,
author = {Jason L. Causey and
Keyu Li and
Xianghao Chen and
Wei Dong and
Karl Walker and
Jake A. Qualls and
Jonathan Stubblefield and
Jason H. Moore and
Yuanfang Guan and
Xiuzhen Huang},
title = {Spatial Pyramid Pooling With 3D Convolution Improves Lung Cancer Detection},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {1165--1172},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3027744},
doi = {10.1109/TCBB.2020.3027744},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/CauseyLCDWQSMGH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/CauseySQFCWGH22,
author = {Jason L. Causey and
Jonathan Stubblefield and
Jake A. Qualls and
Jennifer Fowler and
Lingrui Cai and
Karl Walker and
Yuanfang Guan and
Xiuzhen Huang},
title = {An Ensemble of U-Net Models for Kidney Tumor Segmentation With {CT}
Images},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1387--1392},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3085608},
doi = {10.1109/TCBB.2021.3085608},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/CauseySQFCWGH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChaudhuriMS22,
author = {Anik Chaudhuri and
Anwoy Kumar Mohanty and
Manoranjan Satpathy},
title = {A Parallelizable Model for Analyzing Cancer Tissue Heterogeneity},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2039--2048},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3085894},
doi = {10.1109/TCBB.2021.3085894},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChaudhuriMS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenDAL22,
author = {Qingyu Chen and
Jingcheng Du and
Alexis Allot and
Zhiyong Lu},
title = {LitMC-BERT: Transformer-Based Multi-Label Classification of Biomedical
Literature With An Application on {COVID-19} Literature Curation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2584--2595},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2022.3173562},
doi = {10.1109/TCBB.2022.3173562},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChenDAL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenLZ22,
author = {Xiangan Chen and
Shuai Liu and
Wen Zhang},
title = {Predicting Coding Potential of {RNA} Sequences by Solving Local Data
Imbalance},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {1075--1083},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3021800},
doi = {10.1109/TCBB.2020.3021800},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChenLZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenZDZ22,
author = {Zhong Chen and
Wensheng Zhang and
Hong{-}Wen Deng and
Kun Zhang},
title = {Effective Cancer Subtype and Stage Prediction via Dropfeature-DNNs},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {107--120},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3058941},
doi = {10.1109/TCBB.2021.3058941},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChenZDZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenZLML22,
author = {Shutao Chen and
Lin Zhang and
Lin Lu and
Jia Meng and
Hui Liu},
title = {FBCwPlaid: {A} Functional Biclustering Analysis of Epi-Transcriptome
Profiling Data Via a Weighted Plaid Model},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1640--1650},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3049366},
doi = {10.1109/TCBB.2021.3049366},
timestamp = {Sun, 23 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChenZLML22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChengLYBPW22,
author = {Jianhong Cheng and
Jin Liu and
Hailin Yue and
Harrison Bai and
Yi Pan and
Jianxin Wang},
title = {Prediction of Glioma Grade Using Intratumoral and Peritumoral Radiomic
Features From Multiparametric {MRI} Images},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {1084--1095},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3033538},
doi = {10.1109/TCBB.2020.3033538},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChengLYBPW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChengYWW22,
author = {Zhongjian Cheng and
Cheng Yan and
Fang{-}Xiang Wu and
Jianxin Wang},
title = {Drug-Target Interaction Prediction Using Multi-Head Self-Attention
and Graph Attention Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2208--2218},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3077905},
doi = {10.1109/TCBB.2021.3077905},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChengYWW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChengZLXWLYLWL22,
author = {Jianhong Cheng and
Wei Zhao and
Jin Liu and
Xingzhi Xie and
Shangjie Wu and
Liangliang Liu and
Hailin Yue and
Junjian Li and
Jianxin Wang and
Jun Liu},
title = {Automated Diagnosis of {COVID-19} Using Deep Supervised Autoencoder
With Multi-View Features From {CT} Images},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2723--2736},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3102584},
doi = {10.1109/TCBB.2021.3102584},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChengZLXWLYLWL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChouHHYWH22,
author = {Hsin{-}Hung Chou and
Ching{-}Tien Hsu and
Chin{-}Wei Hsu and
Kai{-}Hsun Yao and
Hao{-}Ching Wang and
Sun{-}Yuan Hsieh},
title = {Novel Algorithm for Improved Protein Classification Using Graph Similarity},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3135--3143},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3125836},
doi = {10.1109/TCBB.2021.3125836},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChouHHYWH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChowdhuryCN22,
author = {Tapan Chowdhury and
Susanta Chakraborty and
Argha Nandan},
title = {{GPU} Accelerated Drug Application on Signaling Pathways Containing
Multiple Faults Using Boolean Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {927--939},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3014172},
doi = {10.1109/TCBB.2020.3014172},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChowdhuryCN22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ClauwaertW22,
author = {Jim Clauwaert and
Willem Waegeman},
title = {Novel Transformer Networks for Improved Sequence Labeling in genomics},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {97--106},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3035021},
doi = {10.1109/TCBB.2020.3035021},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ClauwaertW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/CraveurNSGRB22,
author = {Pierrick Craveur and
Tarun J. Narwani and
Narayanaswamy Srinivasan and
Jean{-}Christophe Gelly and
Joseph Rebehmed and
Alexandre G. de Brevern},
title = {Shaking the {\(\beta\)}-Bulges},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {14--18},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3088444},
doi = {10.1109/TCBB.2021.3088444},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/CraveurNSGRB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/CristovaoCCCNPM22,
author = {Francisco Cristovao and
Silvia Cascianelli and
Arif Canakoglu and
Mark J. Carman and
Luca Nanni and
Pietro Pinoli and
Marco Masseroli},
title = {Investigating Deep Learning Based Breast Cancer Subtyping Using Pan-Cancer
and Multi-Omic Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {121--134},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3042309},
doi = {10.1109/TCBB.2020.3042309},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/CristovaoCCCNPM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/CuiCZGFH22,
author = {Zhen Cui and
Zhan{-}Heng Chen and
Qinhu Zhang and
Valeriya V. Gribova and
Vladimir Fedorovich Filaretov and
De{-}Shuang Huang},
title = {{RMSCNN:} {A} Random Multi-Scale Convolutional Neural Network for
Marine Microbial Bacteriocins Identification},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3663--3672},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3122183},
doi = {10.1109/TCBB.2021.3122183},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/CuiCZGFH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DaiLWPY22,
author = {Yajun Dai and
Yang Li and
Liping Wang and
Zhenling Peng and
Jianyi Yang},
title = {On Monomeric and Multimeric Structures-Based Protein-Ligand Interactions},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {569--574},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3002776},
doi = {10.1109/TCBB.2020.3002776},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DaiLWPY22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DeyM22,
author = {Lopamudra Dey and
Anirban Mukhopadhyay},
title = {Compact Genetic Algorithm-Based Feature Selection for Sequence-Based
Prediction of Dengue-Human Protein Interactions},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2137--2148},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3066597},
doi = {10.1109/TCBB.2021.3066597},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DeyM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DharZMB22,
author = {Saurav Dhar and
Chengchen Zhang and
Ion I. Mandoiu and
Mukul S. Bansal},
title = {TNet: Transmission Network Inference Using Within-Host Strain Diversity
and its Application to Geographical Tracking of {COVID-19} Spread},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {230--242},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3096455},
doi = {10.1109/TCBB.2021.3096455},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DharZMB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DingS22,
author = {Dewu Ding and
Xiao Sun},
title = {Relating Translation Efficiency to Protein Networks Provides Evolutionary
Insights in Shewanella and Its Implications for Extracellular Electron
Transfer},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {605--613},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.2996295},
doi = {10.1109/TCBB.2020.2996295},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DingS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DingYZC22,
author = {Xiaojian Ding and
Fan Yang and
Yaoyi Zhong and
Jie Cao},
title = {A Novel Recursive Gene Selection Method Based on Least Square Kernel
Extreme Learning Machine},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2026--2038},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3068846},
doi = {10.1109/TCBB.2021.3068846},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DingYZC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DongMK22,
author = {Ngan Dong and
Stefanie M{\"{u}}cke and
Megha Khosla},
title = {MuCoMiD: {A} Multitask Graph Convolutional Learning Framework for
miRNA-Disease Association Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3081--3092},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2022.3176456},
doi = {10.1109/TCBB.2022.3176456},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DongMK22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DsouzaLBL22,
author = {Kevin B. Dsouza and
Adam Y. Li and
Vijay K. Bhargava and
Maxwell W. Libbrecht},
title = {Latent Representation of the Human Pan-Celltype Epigenome Through
a Deep Recurrent Neural Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2313--2323},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3084147},
doi = {10.1109/TCBB.2021.3084147},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DsouzaLBL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DursunKB22,
author = {Cagatay Dursun and
Anne E. Kwitek and
Serdar Bozdag},
title = {PhenoGeneRanker: Gene and Phenotype Prioritization Using Multiplex
Heterogeneous Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2950--2962},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3098278},
doi = {10.1109/TCBB.2021.3098278},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DursunKB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DuttaPS22,
author = {Pratik Dutta and
Aditya Prakash Patra and
Sriparna Saha},
title = {DeePROG: Deep Attention-Based Model for Diseased Gene Prognosis by
Fusing Multi-Omics Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2770--2781},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3090302},
doi = {10.1109/TCBB.2021.3090302},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DuttaPS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/FangHDU22,
author = {Min Fang and
Yufeng He and
Zhihua Du and
Vladimir N. Uversky},
title = {DeepCLD: An Efficient Sequence-Based Predictor of Intrinsically Disordered
Proteins},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3154--3159},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3124273},
doi = {10.1109/TCBB.2021.3124273},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/FangHDU22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/FangZLWZL22,
author = {Senbiao Fang and
Ruoqian Zheng and
Chuqi Lei and
Jianxin Wang and
Renyi Zhou and
Min Li},
title = {In Silico Prediction of New Mutations That Can Improve the Binding
Abilities Between 2019-nCoV Coronavirus and Human {ACE2}},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1694--1702},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3058265},
doi = {10.1109/TCBB.2021.3058265},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/FangZLWZL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/FengWWXZ22,
author = {Changli Feng and
Jin Wu and
Haiyan Wei and
Lei Xu and
Quan Zou},
title = {{CRCF:} {A} Method of Identifying Secretory Proteins of Malaria Parasites},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2149--2157},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3085589},
doi = {10.1109/TCBB.2021.3085589},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/FengWWXZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/FengXZS22,
author = {Shi{-}Hao Feng and
Chun{-}Qiu Xia and
Pei{-}Dong Zhang and
Hong{-}Bin Shen},
title = {Ab-Initio Membrane Protein Amphipathic Helix Structure Prediction
Using Deep Neural Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {795--805},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3029274},
doi = {10.1109/TCBB.2020.3029274},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/FengXZS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/FengZC22,
author = {Jinwang Feng and
Shaowu Zhang and
Luonan Chen},
title = {Extracting ROI-Based Contourlet Subband Energy Feature From the sMRI
Image for Alzheimer's Disease Classification},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1627--1639},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3051177},
doi = {10.1109/TCBB.2021.3051177},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/FengZC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/FengZWWL22,
author = {Haonan Feng and
Ruiqing Zheng and
Jianxin Wang and
Fang{-}Xiang Wu and
Min Li},
title = {{NIMCE:} {A} Gene Regulatory Network Inference Approach Based on Multi
Time Delays Causal Entropy},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {1042--1049},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3029846},
doi = {10.1109/TCBB.2020.3029846},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/FengZWWL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/FlammHMNS22,
author = {Christoph Flamm and
Marc Hellmuth and
Daniel Merkle and
Nikolai N{\o}jgaard and
Peter F. Stadler},
title = {Generic Context-Aware Group Contributions},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {429--442},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.2998948},
doi = {10.1109/TCBB.2020.2998948},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/FlammHMNS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/FreireLP22,
author = {Borja Freire and
Susana Ladra and
Jos{\'{e}} R. Param{\'{a}}},
title = {Memory-Efficient Assembly Using Flye},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3564--3577},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3108843},
doi = {10.1109/TCBB.2021.3108843},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/FreireLP22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GanLGZGZ22,
author = {Yanglan Gan and
Ning Li and
Cheng Guo and
Guobing Zou and
Jihong Guan and
Shuigeng Zhou},
title = {TiC2D: Trajectory Inference From Single-Cell RNA-Seq Data Using Consensus
Clustering},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2512--2522},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3061720},
doi = {10.1109/TCBB.2021.3061720},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GanLGZGZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GaoHZLXZ22,
author = {Shan Gao and
Renmin Han and
Xiangrui Zeng and
Zhiyong Liu and
Min Xu and
Fa Zhang},
title = {Macromolecules Structural Classification With a 3D Dilated Dense Network
in Cryo-Electron Tomography},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {209--219},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3065986},
doi = {10.1109/TCBB.2021.3065986},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GaoHZLXZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GaoLXWKL22,
author = {Jianliang Gao and
Tengfei Lyu and
Fan Xiong and
Jianxin Wang and
Weimao Ke and
Zhao Li},
title = {Predicting the Survival of Cancer Patients With Multimodal Graph Neural
Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {699--709},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3083566},
doi = {10.1109/TCBB.2021.3083566},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GaoLXWKL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GaoWLZW22,
author = {Ying{-}Lian Gao and
Ming{-}Juan Wu and
Jin{-}Xing Liu and
Chun{-}Hou Zheng and
Juan Wang},
title = {Robust Principal Component Analysis Based On Hypergraph Regularization
for Sample Clustering and Co-Characteristic Gene Selection},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2420--2430},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3065054},
doi = {10.1109/TCBB.2021.3065054},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GaoWLZW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GaoWWLNZ22,
author = {Zhen Gao and
Yu{-}Tian Wang and
Qing{-}Wen Wu and
Lei Li and
Jian{-}Cheng Ni and
Chun{-}Hou Zheng},
title = {A New Method Based on Matrix Completion and Non-Negative Matrix Factorization
for Predicting Disease-Associated miRNAs},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {763--772},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3027444},
doi = {10.1109/TCBB.2020.3027444},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GaoWWLNZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GentyASKF22,
author = {Jon X. Genty and
Md. Rafiul Amin and
Natalie D. Shaw and
Elizabeth B. Klerman and
Rose T. Faghih},
title = {Sparse Deconvolution of Pulsatile Growth Hormone Secretion in Adolescents},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2463--2470},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3088437},
doi = {10.1109/TCBB.2021.3088437},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GentyASKF22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GhoshC22,
author = {Debopriya Ghosh and
Javier Cabrera},
title = {Enriched Random Forest for High Dimensional Genomic Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2817--2828},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3089417},
doi = {10.1109/TCBB.2021.3089417},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GhoshC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GhoshD22,
author = {Debraj Ghosh and
Rajat K. De},
title = {Block Search Stochastic Simulation Algorithm (BlSSSA): {A} Fast Stochastic
Simulation Algorithm for Modeling Large Biochemical Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2111--2123},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3070123},
doi = {10.1109/TCBB.2021.3070123},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GhoshD22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GhoshM22,
author = {Devleena Ghosh and
Chittaranjan Mandal},
title = {Clustering Based Parameter Estimation of Thyroid Hormone Pathway},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {343--354},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.2995589},
doi = {10.1109/TCBB.2020.2995589},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GhoshM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GiangAH22,
author = {Trinh Van Giang and
Tatsuya Akutsu and
Kunihiko Hiraishi},
title = {An FVS-Based Approach to Attractor Detection in Asynchronous Random
Boolean Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {806--818},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3028862},
doi = {10.1109/TCBB.2020.3028862},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GiangAH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GiangH22,
author = {Trinh Van Giang and
Kunihiko Hiraishi},
title = {On Attractor Detection and Optimal Control of Deterministic Generalized
Asynchronous Random Boolean Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1794--1806},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3043785},
doi = {10.1109/TCBB.2020.3043785},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GiangH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GountiaR22,
author = {Debasis Gountia and
Sudip Roy},
title = {Design-for-Trust Techniques for Digital Microfluidic Biochip Layout
With Error Control Mechanism{\(\star\)}*A preliminary version of this
paper appeared in the Proc. of {IEEE} Region 10 Symposium (TENSYMP),
2019 {[1]}},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1570--1582},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3054622},
doi = {10.1109/TCBB.2021.3054622},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GountiaR22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GovekSZO22,
author = {Kiya Govek and
Camden Sikes and
Yangqiaoyu Zhou and
Layla Oesper},
title = {GraPhyC: Using Consensus to Infer Tumor Evolution},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {465--478},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3029689},
doi = {10.1109/TCBB.2020.3029689},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GovekSZO22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GuanZYL22,
author = {Boxin Guan and
Yuhai Zhao and
Ying Yin and
Yuan Li},
title = {Detecting Disease-Associated {SNP-SNP} Interactions Using Progressive
Screening Memetic Algorithm},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {878--887},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3019256},
doi = {10.1109/TCBB.2020.3019256},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GuanZYL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GudurMAS22,
author = {Venkateshwarlu Yellaswamy Gudur and
Sidharth Maheshwari and
Amit Acharyya and
Rishad A. Shafik},
title = {An {FPGA} Based Energy-Efficient Read Mapper With Parallel Filtering
and In-Situ Verification},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2697--2711},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3106311},
doi = {10.1109/TCBB.2021.3106311},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GudurMAS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GullM22,
author = {Sadaf Gull and
Fayyaz A. Minhas},
title = {AMP\({}_{\mbox{0}}\): Species-Specific Prediction of Anti-microbial
Peptides Using Zero and Few Shot Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {275--283},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.2999399},
doi = {10.1109/TCBB.2020.2999399},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GullM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GuoCCXSYR22,
author = {Xiaojuan Guo and
Kewei Chen and
Yinghua Chen and
Chengjie Xiong and
Yi Su and
Li Yao and
Eric M. Reiman},
title = {A Computational Monte Carlo Simulation Strategy to Determine the Temporal
Ordering of Abnormal Age Onset Among Biomarkers of Alzheimer's Disease},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2613--2622},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3106939},
doi = {10.1109/TCBB.2021.3106939},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GuoCCXSYR22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GuoKSWK22,
author = {Yue Guo and
Oleh Krupa and
Jason L. Stein and
Guorong Wu and
Ashok Kumar Krishnamurthy},
title = {SAU-Net: {A} Unified Network for Cell Counting in 2D and 3D Microscopy
Images},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {1920--1932},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3089608},
doi = {10.1109/TCBB.2021.3089608},
timestamp = {Fri, 01 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GuoKSWK22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GuoQ22,
author = {Alan J. X. Guo and
Hao Qi},
title = {Using Artificial Neural Networks to Model Errors in Biochemical Manipulation
of {DNA} Molecules},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {3060--3067},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3088525},
doi = {10.1109/TCBB.2021.3088525},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GuoQ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GuzziZ22,
author = {Pietro Hiram Guzzi and
Marinka Zitnik},
title = {Editorial Deep Learning and Graph Embeddings for Network Biology},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {653--654},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3110279},
doi = {10.1109/TCBB.2021.3110279},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GuzziZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HakalaKBMMTSG22,
author = {Kai Hakala and
Suwisa Kaewphan and
Jari Bj{\"{o}}rne and
Farrokh Mehryary and
Hans Moen and
Martti Tolvanen and
Tapio Salakoski and
Filip Ginter},
title = {Neural Network and Random Forest Models in Protein Function Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1772--1781},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3044230},
doi = {10.1109/TCBB.2020.3044230},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HakalaKBMMTSG22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HalderBCNPB22,
author = {Anup Kumar Halder and
Soumyendu Sekhar Bandyopadhyay and
Piyali Chatterjee and
Mita Nasipuri and
Dariusz Plewczynski and
Subhadip Basu},
title = {{JUPPI:} {A} Multi-Level Feature Based Method for {PPI} Prediction
and a Refined Strategy for Performance Assessment},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {531--542},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3004970},
doi = {10.1109/TCBB.2020.3004970},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HalderBCNPB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HanKD22,
author = {Genwei Han and
Zhufang Kuang and
Lei Deng},
title = {{MSCNE:} Predict miRNA-Disease Associations Using Neural Network Based
on Multi-Source Biological Information},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2926--2937},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3106006},
doi = {10.1109/TCBB.2021.3106006},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HanKD22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HasnainAGARAP22,
author = {Mirza Jawad ul Hasnain and
Farhat Amin and
Aisha Ghani and
Sibtain Ahmad and
Ziaur Rahman and
Tahera Aslam and
Muhammad Tariq Pervez},
title = {Structural and Functional Impact of Damaging Nonsynonymous Single
Nucleotide Polymorphisms (nsSNPs) on Human {VPS35} Protein Using Computational
Approaches},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3715--3724},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3118054},
doi = {10.1109/TCBB.2021.3118054},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HasnainAGARAP22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HoodaGG22,
author = {Nishtha Hooda and
Ruchika Gupta and
Nidhi Rani Gupta},
title = {Prediction of Malignant Breast Cancer Cases Using Ensemble Machine
Learning: {A} Case Study of Pesticides Prone Area},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {1096--1104},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3033214},
doi = {10.1109/TCBB.2020.3033214},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HoodaGG22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HowladarRR22,
author = {Pampa Howladar and
Pranab Roy and
Hafizur Rahaman},
title = {{MEDA} Based Biochips: Detection, Prevention and Rectification Techniques
for Cyberphysical Attacks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2345--2355},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3069380},
doi = {10.1109/TCBB.2021.3069380},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HowladarRR22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HuBZJYZ22,
author = {Jun Hu and
Yan{-}Song Bai and
Lin{-}Lin Zheng and
Ning{-}Xin Jia and
Dong{-}Jun Yu and
Gui{-}Jun Zhang},
title = {Protein-DNA Binding Residue Prediction via Bagging Strategy and Sequence-Based
Cube-Format Feature},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3635--3645},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3123828},
doi = {10.1109/TCBB.2021.3123828},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HuBZJYZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HuangHA22,
author = {De{-}Shuang Huang and
Kyungsook Han and
Tatsuya Akutsu},
title = {Guest Editorial for Special Section on the 16th International Conference
on Intelligent Computing {(ICIC)}},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3124--3125},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2022.3150232},
doi = {10.1109/TCBB.2022.3150232},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HuangHA22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HuangJ22,
author = {Zhanpeng Huang and
Wu Jiekang},
title = {A Multiview Clustering Method With Low-Rank and Sparsity Constraints
for Cancer Subtyping},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3213--3223},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3122917},
doi = {10.1109/TCBB.2021.3122917},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HuangJ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HuangLLTSL22,
author = {Xin Huang and
Zhenqian Liao and
Bing Liu and
Fengmei Tao and
Benzhe Su and
Xiaohui Lin},
title = {A Novel Method for Constructing Classification Models by Combining
Different Biomarker Patterns},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {786--794},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3022076},
doi = {10.1109/TCBB.2020.3022076},
timestamp = {Sat, 19 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HuangLLTSL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HuangLYCGZFLY22,
author = {Runhua Huang and
Chengchuang Lin and
Aihua Yin and
Hanbiao Chen and
Li Guo and
Gansen Zhao and
Xiaomao Fan and
Shuangyin Li and
Jinji Yang},
title = {A Clinical Dataset and Various Baselines for Chromosome Instance Segmentation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {31--39},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3089507},
doi = {10.1109/TCBB.2021.3089507},
timestamp = {Sat, 06 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/HuangLYCGZFLY22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HuangNNLW22,
author = {Neng Huang and
Fan Nie and
Peng Ni and
Feng Luo and
Jianxin Wang},
title = {SACall: {A} Neural Network Basecaller for Oxford Nanopore Sequencing
Data Based on Self-Attention Mechanism},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {614--623},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3039244},
doi = {10.1109/TCBB.2020.3039244},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HuangNNLW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HuangWM22,
author = {Zhihao Huang and
Yan Wang and
Xiaoke Ma},
title = {Clustering of Cancer Attributed Networks by Dynamically and Jointly
Factorizing Multi-Layer Graphs},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2737--2748},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3090586},
doi = {10.1109/TCBB.2021.3090586},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HuangWM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HuangYYC22,
author = {Qinlong Huang and
Wei Yue and
Yixian Yang and
Lixuan Chen},
title = {{P2GT:} Fine-Grained Genomic Data Access Control With Privacy-Preserving
Testing in Cloud Computing},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2385--2398},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3063388},
doi = {10.1109/TCBB.2021.3063388},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HuangYYC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HuangZG22,
author = {Xiuzhen Huang and
Yu Zhang and
Xuan Guo},
title = {Editorial},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1334--1335},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3131688},
doi = {10.1109/TCBB.2021.3131688},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HuangZG22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/IrigoienCSSRA22,
author = {Itziar Irigoien and
Bru Cormand and
Mar{\'{\i}}a Soler{-}Artigas and
Cristina S{\'{a}}nchez{-}Mora and
Josep{-}Antoni Ramos{-}Quiroga and
Concepci{\'{o}}n Arenas},
title = {New Distance-Based approach for Genome-Wide Association Studies},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2938--2949},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3092812},
doi = {10.1109/TCBB.2021.3092812},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/IrigoienCSSRA22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/IroniL22,
author = {Liliana Ironi and
Ettore Lanzarone},
title = {Optimal Robust Search for Parameter Values of Qualitative Models of
Gene Regulatory Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {1050--1063},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3006920},
doi = {10.1109/TCBB.2020.3006920},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/IroniL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/IsikGAB22,
author = {Yunus Emre Isik and
Yasin G{\"{o}}rmez and
Zafer Aydin and
Burcu Bakir{-}Gungor},
title = {The Determination of Distinctive Single Nucleotide Polymorphism Sets
for the Diagnosis of Beh{\c{c}}et's Disease},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1909--1918},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3053429},
doi = {10.1109/TCBB.2021.3053429},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/IsikGAB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JiWGLNZ22,
author = {Cunmei Ji and
Yutian Wang and
Zhen Gao and
Lei Li and
Jiancheng Ni and
Chunhou Zheng},
title = {A Semi-Supervised Learning Method for MiRNA-Disease Association Prediction
Based on Variational Autoencoder},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2049--2059},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3067338},
doi = {10.1109/TCBB.2021.3067338},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JiWGLNZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JiaSMYY22,
author = {Xibin Jia and
Zheng Sun and
Qing Mi and
Zhenghan Yang and
Dawei Yang},
title = {A Multimodality-Contribution-Aware TripNet for Histologic Grading
of Hepatocellular Carcinoma},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2003--2016},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3079216},
doi = {10.1109/TCBB.2021.3079216},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JiaSMYY22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JiangCGHLFDLW22,
author = {Tengsheng Jiang and
Yuhui Chen and
Shixuan Guan and
Zhongtian Hu and
Weizhong Lu and
Qiming Fu and
Yijie Ding and
Haiou Li and
Hongjie Wu},
title = {G Protein-Coupled Receptor Interaction Prediction Based on Deep Transfer
Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3126--3134},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3128172},
doi = {10.1109/TCBB.2021.3128172},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JiangCGHLFDLW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JiangZWQSZZZ22,
author = {Hao Jiang and
Fei Zhan and
Congtao Wang and
Jianfeng Qiu and
Yansen Su and
Chunhou Zheng and
Xingyi Zhang and
Xiangxiang Zeng},
title = {A Robust Algorithm Based on Link Label Propagation for Identifying
Functional Modules From Protein-Protein Interaction Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1435--1448},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3038815},
doi = {10.1109/TCBB.2020.3038815},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JiangZWQSZZZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JinJZHWW22,
author = {Yuanyuan Jin and
Wendi Ji and
Wei Zhang and
Xiangnan He and
Xinyu Wang and
Xiaoling Wang},
title = {A KG-Enhanced Multi-Graph Neural Network for Attentive Herb Recommendation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2560--2571},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3115489},
doi = {10.1109/TCBB.2021.3115489},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JinJZHWW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JingZZ22,
author = {Fang Jing and
Shaowu Zhang and
Shihua Zhang},
title = {Prediction of Transcription Factor Binding Sites With an Attention
Augmented Convolutional Neural Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3614--3623},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3126623},
doi = {10.1109/TCBB.2021.3126623},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JingZZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KCLCH22,
author = {Kishan KC and
Rui Li and
Feng Cui and
Anne R. Haake},
title = {Predicting Biomedical Interactions With Higher-Order Graph Convolutional
Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {676--687},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3059415},
doi = {10.1109/TCBB.2021.3059415},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KCLCH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KarimCZSRBD22,
author = {Md. Rezaul Karim and
Michael Cochez and
Achille Zappa and
Ratnesh Sahay and
Dietrich Rebholz{-}Schuhmann and
Oya Beyan and
Stefan Decker},
title = {Convolutional Embedded Networks for Population Scale Clustering and
Bio-Ancestry Inferencing},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {369--382},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.2994649},
doi = {10.1109/TCBB.2020.2994649},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KarimCZSRBD22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KhanSP22,
author = {Abhinandan Khan and
Goutam Saha and
Rajat Kumar Pal},
title = {Controlling the Effects of External Perturbations on a Gene Regulatory
Network Using Proportional-Integral-Derivative Controller},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1531--1544},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3039038},
doi = {10.1109/TCBB.2020.3039038},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KhanSP22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KhatamifardCPRK22,
author = {S. Karen Khatamifard and
Zamshed I. Chowdhury and
Nakul Pande and
Meisam Razaviyayn and
Chris H. Kim and
Ulya R. Karpuzcu},
title = {GeNVoM: Read Mapping Near Non-Volatile Memory},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3482--3496},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3118018},
doi = {10.1109/TCBB.2021.3118018},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KhatamifardCPRK22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KimID22,
author = {Eunji Kim and
Ivan Ivanov and
Edward R. Dougherty},
title = {Network Classification Based on Reducibility With Respect to the Stability
of Canalizing Power of Genes in a Gene Regulatory Network - {A} Boolean
Network Modeling Perspective},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {558--568},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3005313},
doi = {10.1109/TCBB.2020.3005313},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KimID22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KimKP22,
author = {Sun Ah Kim and
Nayeon Kang and
Taesung Park},
title = {Hierarchical Structured Component Analysis for Microbiome Data Using
Taxonomy Assignments},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1302--1312},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3039326},
doi = {10.1109/TCBB.2020.3039326},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KimKP22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KimY22,
author = {Seonho Kim and
Juntae Yoon},
title = {Dual Triggered Correspondence Topic (DTCT)model for MeSH annotation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {899--911},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3016355},
doi = {10.1109/TCBB.2020.3016355},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KimY22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KoKPP22,
author = {Young{-}Joon Ko and
Sangsoo Kim and
Cheol{-}Ho Pan and
Keunwan Park},
title = {Identification of Functional Microbial Modules Through Network-Based
Analysis of Meta-Microbial Features Using Matrix Factorization},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2851--2862},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3100893},
doi = {10.1109/TCBB.2021.3100893},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KoKPP22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KumarTMG22,
author = {P. V. Sunil Kumar and
Adheeba Thahsin and
Manju M and
G. Gopakumar},
title = {A Heterogeneous Information Network Model for Long Non-Coding {RNA}
Function Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {255--266},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3000518},
doi = {10.1109/TCBB.2020.3000518},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KumarTMG22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KuruTC22,
author = {Halil Ibrahim Kuru and
{\"{O}}znur Tastan and
A. Erc{\"{u}}ment {\c{C}}i{\c{c}}ek},
title = {MatchMaker: {A} Deep Learning Framework for Drug Synergy Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2334--2344},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3086702},
doi = {10.1109/TCBB.2021.3086702},
timestamp = {Sat, 20 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KuruTC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LanDCLWCP22,
author = {Wei Lan and
Yi Dong and
Qingfeng Chen and
Jin Liu and
Jianxin Wang and
Yi{-}Ping Phoebe Chen and
Shirui Pan},
title = {{IGNSCDA:} Predicting CircRNA-Disease Associations Based on Improved
Graph Convolutional Network and Negative Sampling},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3530--3538},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3111607},
doi = {10.1109/TCBB.2021.3111607},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LanDCLWCP22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LanLCWCLWC22,
author = {Wei Lan and
Dehuan Lai and
Qingfeng Chen and
Ximin Wu and
Baoshan Chen and
Jin Liu and
Jianxin Wang and
Yi{-}Ping Phoebe Chen},
title = {{LDICDL:} LncRNA-Disease Association Identification Based on Collaborative
Deep Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1715--1723},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3034910},
doi = {10.1109/TCBB.2020.3034910},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LanLCWCLWC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LangaritaASIAM22,
author = {Rub{\'{e}}n Langarita and
Adri{\`{a}} Armejach and
Javier Setoain and
Pablo Ib{\'{a}}{\~{n}}ez{-}Mar{\'{\i}}n and
Jes{\'{u}}s Alastruey{-}Bened{\'{e}} and
Miquel Moret{\'{o}}},
title = {Compressed Sparse FM-Index: Fast Sequence Alignment Using Large K-Steps},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {355--368},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3000253},
doi = {10.1109/TCBB.2020.3000253},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LangaritaASIAM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LazarsfeldRELC22,
author = {John Lazarsfeld and
Jonathan Rodr{\'{\i}}guez and
Mert Erden and
Yuelin Liu and
Lenore J. Cowen},
title = {Majority Vote Cascading: {A} Semi-Supervised Framework for Improving
Protein Function Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {1933--1945},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3059812},
doi = {10.1109/TCBB.2021.3059812},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LazarsfeldRELC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LeMayLW22,
author = {Matthew LeMay and
Ran Libeskind{-}Hadas and
Yi{-}Chieh Wu},
title = {A Polynomial-Time Algorithm for Minimizing the Deep Coalescence Cost
for Level-1 Species Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2642--2653},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3105922},
doi = {10.1109/TCBB.2021.3105922},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LeMayLW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LeiTP22,
author = {Xiujuan Lei and
Jiaojiao Tie and
Yi Pan},
title = {Inferring Metabolite-Disease Association Using Graph Convolutional
Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {688--698},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3065562},
doi = {10.1109/TCBB.2021.3065562},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LeiTP22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LeinonenS22,
author = {Miika Leinonen and
Leena Salmela},
title = {Extraction of Long k-mers Using Spaced Seeds},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3444--3455},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3113131},
doi = {10.1109/TCBB.2021.3113131},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LeinonenS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiGZQWN22,
author = {Lei Li and
Zhen Gao and
Chun{-}Hou Zheng and
Rong Qi and
Yu{-}Tian Wang and
Jian{-}Cheng Ni},
title = {Predicting miRNA-Disease Association Based on Improved Graph Regression},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3604--3613},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3127017},
doi = {10.1109/TCBB.2021.3127017},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiGZQWN22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiL22,
author = {Yanbo Li and
Yu Lin},
title = {DCHap: {A} Divide-and-Conquer Haplotype Phasing Algorithm for Third-Generation
Sequences},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1277--1284},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3005673},
doi = {10.1109/TCBB.2020.3005673},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiLKWLHBCFY22,
author = {Hansheng Li and
Jianping Li and
Yuxin Kang and
Chunbao Wang and
Feihong Liu and
Wenli Hui and
Qirong Bo and
Lei Cui and
Jun Feng and
Lin Yang},
title = {A Novel Encoding and Decoding Calibration Guiding Pathway for Pathological
Image Analysis},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {267--274},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3023467},
doi = {10.1109/TCBB.2020.3023467},
timestamp = {Wed, 14 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiLKWLHBCFY22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiM22,
author = {Qi Li and
Tijana Milenkovic},
title = {Supervised Prediction of Aging-Related Genes From a Context-Specific
Protein Interaction Subnetwork},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2484--2498},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3076961},
doi = {10.1109/TCBB.2021.3076961},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiSLWP22,
author = {Chao Li and
Jun Sun and
Li{-}Wei Li and
Xiaojun Wu and
Vasile Palade},
title = {An Effective Swarm Intelligence Optimization Algorithm for Flexible
Ligand Docking},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2672--2684},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3103777},
doi = {10.1109/TCBB.2021.3103777},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiSLWP22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiTTZZ22,
author = {Bo Li and
Yihui Tian and
Yang Tian and
Shihua Zhang and
Xiaolong Zhang},
title = {Predicting Cancer Lymph-Node Metastasis From LncRNA Expression Profiles
Using Local Linear Reconstruction Guided Distance Metric Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3179--3189},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2022.3149791},
doi = {10.1109/TCBB.2022.3149791},
timestamp = {Sun, 23 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiTTZZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiWGZ22,
author = {Ruiyi Li and
Zhiye Wang and
Jihong Guan and
Shuigeng Zhou},
title = {Effectively Clustering Single Cell {RNA} Sequencing Data by Sparse
Representation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3425--3434},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3128576},
doi = {10.1109/TCBB.2021.3128576},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiWGZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiWLZW22,
author = {Jin Li and
Jingru Wang and
Hao Lv and
Zhuoxuan Zhang and
Zaixia Wang},
title = {{IMCHGAN:} Inductive Matrix Completion With Heterogeneous Graph Attention
Networks for Drug-Target Interactions Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {655--665},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3088614},
doi = {10.1109/TCBB.2021.3088614},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiWLZW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiWWLZZCLZCW22,
author = {Minjie Li and
Ziheng Wu and
Wenyan Wang and
Kun Lu and
Jun Zhang and
Yuming Zhou and
Zhaoquan Chen and
Dan Li and
Shicheng Zheng and
Peng Chen and
Bing Wang},
title = {Protein-Protein Interaction Sites Prediction Based on an Under-Sampling
Strategy and Random Forest Algorithm},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3646--3654},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3123269},
doi = {10.1109/TCBB.2021.3123269},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiWWLZZCLZCW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiWXX22,
author = {Wen Li and
Shu{-}Lin Wang and
Junlin Xu and
Ju Xiang},
title = {Inferring Latent MicroRNA-Disease Associations on a Gene-Mediated
Tripartite Heterogeneous Multiplexing Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3190--3201},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2022.3143770},
doi = {10.1109/TCBB.2022.3143770},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiWXX22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiXWL22,
author = {Xingyi Li and
Ju Xiang and
Fang{-}Xiang Wu and
Min Li},
title = {A Dual Ranking Algorithm Based on the Multiplex Network for Heterogeneous
Complex Disease Analysis},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {1993--2002},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3059046},
doi = {10.1109/TCBB.2021.3059046},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiXWL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiZLGZ22,
author = {Lechuan Li and
Chonghao Zhang and
Shiyu Liu and
Hannah Guan and
Yu Zhang},
title = {Age Prediction by {DNA} Methylation in Neural Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1393--1402},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3084596},
doi = {10.1109/TCBB.2021.3084596},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiZLGZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiZM22,
author = {Dongyuan Li and
Shuyao Zhang and
Xiaoke Ma},
title = {Dynamic Module Detection in Temporal Attributed Networks of Cancers},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2219--2230},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3069441},
doi = {10.1109/TCBB.2021.3069441},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiZM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiZWLL22,
author = {Yiming Li and
Min Zeng and
Yifan Wu and
Yaohang Li and
Min Li},
title = {Accurate Prediction of Human Essential Proteins Using Ensemble Deep
Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3263--3271},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3122294},
doi = {10.1109/TCBB.2021.3122294},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiZWLL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LinLZZ22,
author = {Cheng{-}Xian Lin and
Haihong Liu and
Tonghua Zhang and
Yuan Zhang},
title = {Stability and Bifurcation Analysis of a Diffusive miR-9/Hes1 Network
With Time Delay},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1870--1880},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3050006},
doi = {10.1109/TCBB.2021.3050006},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LinLZZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LinZYYWGCMZLWDP22,
author = {Chengchuang Lin and
Gansen Zhao and
Zhirong Yang and
Aihua Yin and
Jianxin Wang and
Li Guo and
Hanbiao Chen and
Zhaohui Ma and
Lei Zhao and
Haoyu Luo and
Tianxing Wang and
Bichao Ding and
Xiongwen Pang and
Qiren Chen},
title = {CIR-Net: Automatic Classification of Human Chromosome Based on Inception-ResNet
Architecture},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1285--1293},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3003445},
doi = {10.1109/TCBB.2020.3003445},
timestamp = {Sat, 06 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/LinZYYWGCMZLWDP22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuCWSJYW22,
author = {Cheng Liu and
Wenming Cao and
Si Wu and
Wenjun Shen and
Dazhi Jiang and
Zhiwen Yu and
Hau{-}San Wong},
title = {Supervised Graph Clustering for Cancer Subtyping Based on Survival
Analysis and Integration of Multi-Omic Tumor Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {1193--1202},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3010509},
doi = {10.1109/TCBB.2020.3010509},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuCWSJYW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuDYZ22,
author = {Chuang Liu and
Yao Dai and
Keping Yu and
Zi{-}Ke Zhang},
title = {Enhancing Cancer Driver Gene Prediction by Protein-Protein Interaction
Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2231--2240},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3063532},
doi = {10.1109/TCBB.2021.3063532},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuDYZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuJCXNZH22,
author = {Zhonghao Liu and
Jing Jin and
Yuxin Cui and
Zheng Xiong and
Alireza Nasiri and
Yong Zhao and
Jianjun Hu},
title = {DeepSeqPanII: An Interpretable Recurrent Neural Network Model With
Attention Mechanism for Peptide-HLA Class {II} Binding Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2188--2196},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3074927},
doi = {10.1109/TCBB.2021.3074927},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuJCXNZH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuLC22,
author = {Pei Liu and
Jiawei Luo and
Xiangtao Chen},
title = {miRCom: Tensor Completion Integrating Multi-View Information to Deduce
the Potential Disease-Related miRNA-miRNA Pairs},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1747--1759},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3037331},
doi = {10.1109/TCBB.2020.3037331},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuLC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuLLHD22,
author = {Dayun Liu and
Junyi Liu and
Yi Luo and
Qihua He and
Lei Deng},
title = {{MGATMDA:} Predicting Microbe-Disease Associations via Multi-Component
Graph Attention Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3578--3585},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3116318},
doi = {10.1109/TCBB.2021.3116318},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuLLHD22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuLLMW22,
author = {Yu Liu and
Ao Li and
Jiangshu Liu and
Gang Meng and
Minghui Wang},
title = {{TSDLPP:} {A} Novel Two-Stage Deep Learning Framework For Prognosis
Prediction Based on Whole Slide Histopathological Images},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2523--2532},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3080295},
doi = {10.1109/TCBB.2021.3080295},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuLLMW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuLZH22,
author = {Yan Liu and
Hao Liang and
Quan Zou and
Zengyou He},
title = {Significance-Based Essential Protein Discovery},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {633--642},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3004364},
doi = {10.1109/TCBB.2020.3004364},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuLZH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuMLH22,
author = {Fu Liu and
Yan Miao and
Yun Liu and
Tao Hou},
title = {RNN-VirSeeker: {A} Deep Learning Method for Identification of Short
Viral Sequences From Metagenomes},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1840--1849},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3044575},
doi = {10.1109/TCBB.2020.3044575},
timestamp = {Thu, 16 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuMLH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuSL22,
author = {Jian Liu and
Jialiang Sun and
Yongzhuang Liu},
title = {Effective Identification of Bacterial Genomes From Short and Long
Read Sequencing Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2806--2816},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3095164},
doi = {10.1109/TCBB.2021.3095164},
timestamp = {Thu, 11 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuSL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuSWJH22,
author = {Xiang Liu and
Ning Shi and
Yan Wang and
Zhicheng Ji and
Shan He},
title = {Data-Driven Boolean Network Inference Using a Genetic Algorithm With
Marker-Based Encoding},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1558--1569},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3055646},
doi = {10.1109/TCBB.2021.3055646},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuSWJH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuTWWW22,
author = {Liangliang Liu and
Shaojie Tang and
Fang{-}Xiang Wu and
Yu{-}Ping Wang and
Jianxin Wang},
title = {An Ensemble Hybrid Feature Selection Method for Neuropsychiatric Disorder
Classification},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1459--1471},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3053181},
doi = {10.1109/TCBB.2021.3053181},
timestamp = {Tue, 02 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/LiuTWWW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuXYZLZ22,
author = {Shuai Liu and
Xinran Xu and
Zhihao Yang and
Xiaohan Zhao and
Shichao Liu and
Wen Zhang},
title = {{EPIHC:} Improving Enhancer-Promoter Interaction Prediction by Using
Hybrid Features and Communicative Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3435--3443},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3109488},
doi = {10.1109/TCBB.2021.3109488},
timestamp = {Fri, 01 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/LiuXYZLZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuYSSAHMM22,
author = {Fei Liu and
Ena Yamamoto and
Katsunobu Shirahama and
Tsubasa Saitoh and
Shuhei Aoyama and
Yumiko Harada and
Ryutaro Murakami and
Hiroshi Matsuno},
title = {Analysis of Pattern Formation by Colored Petri Nets With Quantitative
Regulation of Gene Expression Level},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {317--327},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3005392},
doi = {10.1109/TCBB.2020.3005392},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuYSSAHMM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuZ22,
author = {Jianli Liu and
Deliang Zhou},
title = {Minimum Functional Length Analysis of K-Mer Based on {BPNN}},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2920--2925},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3098512},
doi = {10.1109/TCBB.2021.3098512},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Lopez-Fernandez22,
author = {Hugo L{\'{o}}pez{-}Fern{\'{a}}ndez and
Pedro Duque and
No{\'{e}} V{\'{a}}zquez and
Florentino Fdez{-}Riverola and
Miguel Reboiro{-}Jato and
Cristina P. Vieira and
Jorge Vieira},
title = {{SEDA:} {A} Desktop Tool Suite for {FASTA} Files Processing},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1850--1860},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3040383},
doi = {10.1109/TCBB.2020.3040383},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Lopez-Fernandez22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LuLWNZ22,
author = {Shuai Lu and
Yuguang Li and
Fei Wang and
Xiaofei Nan and
Shoutao Zhang},
title = {Leveraging Sequential and Spatial Neighbors Information by Using CNNs
Linked With GCNs for Paratope Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {68--74},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3083001},
doi = {10.1109/TCBB.2021.3083001},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LuLWNZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LuLZYCH22,
author = {Xinguo Lu and
Jinxin Li and
Zhenghao Zhu and
Yue Yuan and
Guanyuan Chen and
Keren He},
title = {Predicting miRNA-Disease Associations via Combining Probability Matrix
Feature Decomposition With Neighbor Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3160--3170},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3097037},
doi = {10.1109/TCBB.2021.3097037},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LuLZYCH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Ma22,
author = {Jian Ma},
title = {Guest Editorial for Selected Papers From {ACM-BCB} 2019},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {1919},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2022.3140625},
doi = {10.1109/TCBB.2022.3140625},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Ma22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MaHTJ22,
author = {Yingjun Ma and
Tingting He and
Yuting Tan and
Xingpeng Jiang},
title = {Seq-BEL: Sequence-Based Ensemble Learning for Predicting Virus-Human
Protein-Protein Interaction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1322--1333},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3008157},
doi = {10.1109/TCBB.2020.3008157},
timestamp = {Thu, 28 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/MaHTJ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MaJZY22,
author = {Jingjing Ma and
Haitao Jiang and
Daming Zhu and
Runmin Yang},
title = {Algorithms and Hardness for Scaffold Filling to Maximize Increased
Duo-Preservations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2071--2079},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3083896},
doi = {10.1109/TCBB.2021.3083896},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MaJZY22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MaSG22,
author = {Xiaoke Ma and
Peng Gang Sun and
Maoguo Gong},
title = {An Integrative Framework of Heterogeneous Genomic Data for Cancer
Dynamic Modules Based on Matrix Decomposition},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {305--316},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3004808},
doi = {10.1109/TCBB.2020.3004808},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MaSG22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MaZLL22,
author = {Jiani Ma and
Lin Zhang and
Shaojie Li and
Hui Liu},
title = {{BRPCA:} Bounded Robust Principal Component Analysis to Incorporate
Similarity Network for N7-Methylguanosine(m\({}^{\mbox{7}}\)G) Site-Disease
Association Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3295--3306},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3109055},
doi = {10.1109/TCBB.2021.3109055},
timestamp = {Sun, 23 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MaZLL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MadhumitaP22,
author = {Madhumita and
Sushmita Paul},
title = {A Feature Weighting-Assisted Approach for Cancer Subtypes Identification
From Paired Expression Profiles},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1403--1414},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3041723},
doi = {10.1109/TCBB.2020.3041723},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MadhumitaP22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MahapatraGSP22,
author = {Satyajit Mahapatra and
Vivek Raj Gupta and
Sitanshu Sekhar Sahu and
Ganapati Panda},
title = {Deep Neural Network and Extreme Gradient Boosting Based Hybrid Classifier
for Improved Prediction of Protein-Protein Interaction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {155--165},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3061300},
doi = {10.1109/TCBB.2021.3061300},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MahapatraGSP22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MajumderTPS22,
author = {Subhasree Majumder and
Yogita Thakran and
Vipin Pal and
Kuldeep Singh},
title = {Fuzzy and Rough Set Theory Based Computational Framework for Mining
Genetic Interaction Triplets From Gene Expression Profiles for Lung
Adenocarcinoma},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3469--3481},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3120844},
doi = {10.1109/TCBB.2021.3120844},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MajumderTPS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MallickMBC22,
author = {Koushik Mallick and
Saurav Mallik and
Sanghamitra Bandyopadhyay and
Sikim Chakraborty},
title = {A Novel Graph Topology-Based GO-Similarity Measure for Signature Detection
From Multi-Omics Data and its Application to Other Problems},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {773--785},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3020537},
doi = {10.1109/TCBB.2020.3020537},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MallickMBC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ManduchiLFM22,
author = {Elisabetta Manduchi and
Trang T. Le and
Weixuan Fu and
Jason H. Moore},
title = {Genetic Analysis of Coronary Artery Disease Using Tree-Based Automated
Machine Learning Informed By Biology-Based Feature Selection},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1379--1386},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3099068},
doi = {10.1109/TCBB.2021.3099068},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ManduchiLFM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ManipurMGGMG22,
author = {Ichcha Manipur and
Mario Manzo and
Ilaria Granata and
Maurizio Giordano and
Lucia Maddalena and
Mario R. Guarracino},
title = {Netpro2vec: {A} Graph Embedding Framework for Biomedical Applications},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {729--740},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3078089},
doi = {10.1109/TCBB.2021.3078089},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ManipurMGGMG22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MartinsGPCM22,
author = {Andreia S. Martins and
Marta Gromicho and
Susana Pinto and
Mamede de Carvalho and
Sara C. Madeira},
title = {Learning Prognostic Models Using Disease Progression Patterns: Predicting
the Need for Non-Invasive Ventilation in Amyotrophic Lateral Sclerosis},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2572--2583},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3078362},
doi = {10.1109/TCBB.2021.3078362},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MartinsGPCM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MatroudTH22,
author = {Atheer A. Matroud and
Christopher P. Tuffley and
Michael D. Hendy},
title = {An Asymmetric Alignment Algorithm for Estimating Ancestor-Descendant
Edit Distance for Tandem Repeats},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2080--2091},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3059239},
doi = {10.1109/TCBB.2021.3059239},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MatroudTH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Mazrouee22,
author = {Sepideh Mazrouee},
title = {ARHap: Association Rule Haplotype Phasing},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3281--3294},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3119955},
doi = {10.1109/TCBB.2021.3119955},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Mazrouee22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Mendonca-NetoLF22,
author = {Rayol Mendonca{-}Neto and
Zhi Li and
David Feny{\"{o}} and
Cl{\'{a}}udio T. Silva and
Fab{\'{\i}}ola G. Nakamura and
Eduardo Freire Nakamura},
title = {A Gene Selection Method Based on Outliers for Breast Cancer Subtype
Classification},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2547--2559},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3132339},
doi = {10.1109/TCBB.2021.3132339},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Mendonca-NetoLF22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MengXZWL22,
author = {Xiangmao Meng and
Ju Xiang and
Ruiqing Zheng and
Fang{-}Xiang Wu and
Min Li},
title = {{DPCMNE:} Detecting Protein Complexes From Protein-Protein Interaction
Networks Via Multi-Level Network Embedding},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1592--1602},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3050102},
doi = {10.1109/TCBB.2021.3050102},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MengXZWL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Mirzal22,
author = {Andri Mirzal},
title = {Statistical Analysis of Microarray Data Clustering using NMF, Spectral
Clustering, Kmeans, and {GMM}},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {1173--1192},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3025486},
doi = {10.1109/TCBB.2020.3025486},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Mirzal22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Miyazawa22,
author = {Sanzo Miyazawa},
title = {Boltzmann Machine Learning and Regularization Methods for Inferring
Evolutionary Fields and Couplings From a Multiple Sequence Alignment},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {328--342},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.2993232},
doi = {10.1109/TCBB.2020.2993232},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Miyazawa22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MondalASA22,
author = {Arnab Kumar Mondal and
Himanshu Asnani and
Parag Singla and
Prathosh AP},
title = {scRAE: Deterministic Regularized Autoencoders With Flexible Priors
for Clustering Single-Cell Gene Expression Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2996--3007},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3098394},
doi = {10.1109/TCBB.2021.3098394},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MondalASA22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MondolTRIEK22,
author = {Raktim Kumar Mondol and
Nhan Duy Truong and
Mohammad Reza and
Samuel Ippolito and
Esmaeil Ebrahimie and
Omid Kavehei},
title = {AFExNet: An Adversarial Autoencoder for Differentiating Breast Cancer
Sub-Types and Extracting Biologically Relevant Genes},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2060--2070},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3066086},
doi = {10.1109/TCBB.2021.3066086},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MondolTRIEK22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MongiaCM22,
author = {Aanchal Mongia and
{\'{E}}milie Chouzenoux and
Angshul Majumdar},
title = {Computational Prediction of Drug-Disease Association Based on Graph-Regularized
One Bit Matrix Completion},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3332--3339},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2022.3189879},
doi = {10.1109/TCBB.2022.3189879},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MongiaCM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MoonLPHK22,
author = {Ji Hwan Moon and
Sangseon Lee and
Minwoo Pak and
Benjamin Hur and
Sun Kim},
title = {{MLDEG:} {A} Machine Learning Approach to Identify Differentially
Expressed Genes Using Network Property and Network Propagation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2356--2364},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3067613},
doi = {10.1109/TCBB.2021.3067613},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MoonLPHK22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MukherjeeDRAPB22,
author = {Kingshuk Mukherjee and
Daniel Dole{-}Muinos and
Massimiliano Rossi and
Ayomide Ajayi and
Mattia Prosperi and
Christina Boucher},
title = {Finding Overlapping Rmaps via Clustering},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3114--3123},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3132534},
doi = {10.1109/TCBB.2021.3132534},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MukherjeeDRAPB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MusluHLHF22,
author = {Ozlem Muslu and
Charles Tapley Hoyt and
Mauricio Lacerda and
Martin Hofmann{-}Apitius and
Holger Fr{\"{o}}hlich},
title = {GuiltyTargets: Prioritization of Novel Therapeutic Targets With Network
Representation Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {491--500},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3003830},
doi = {10.1109/TCBB.2020.3003830},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MusluHLHF22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/NaikRV22,
author = {Musab Naik and
Luis Rueda and
Akram Vasighizaker},
title = {Identification of Enriched Regions in ChIP-Seq Data via a Linear-Time
Multi-Level Thresholding Algorithm},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2842--2850},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3104734},
doi = {10.1109/TCBB.2021.3104734},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/NaikRV22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/NakamuraSSBMM22,
author = {Gilberto Medeiros Nakamura and
Alinne Cristinne Corr{\^{e}}a Souza and
Francisco Carlos M. Souza and
Renato F. Bulc{\~{a}}o{-}Neto and
Alexandre Souto Martinez and
Alessandra A. Macedo},
title = {Using Symmetry to Enhance the Performance of Agent-Based Epidemic
Models},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {1245--1254},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3018901},
doi = {10.1109/TCBB.2020.3018901},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/NakamuraSSBMM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/NaseerHKR22,
author = {Sheraz Naseer and
Waqar Hussain and
Yaser Daanial Khan and
Nouman Rasool},
title = {iPhosS(Deep)-PseAAC: Identification of Phosphoserine Sites in Proteins
Using Deep Learning on General Pseudo Amino Acid Compositions},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1703--1714},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3040747},
doi = {10.1109/TCBB.2020.3040747},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/NaseerHKR22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/NavidASRA22,
author = {Afifa Navid and
Sajjad Ahmad and
Rida Sajjad and
Saad Raza and
Syed Sikander Azam},
title = {Structure Based in Silico Screening Revealed a Potent Acinetobacter
Baumannii Ftsz Inhibitor From Asinex Antibacterial Library},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {3008--3018},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3103899},
doi = {10.1109/TCBB.2021.3103899},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/NavidASRA22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/NewazM22,
author = {Khalique Newaz and
Tijana Milenkovic},
title = {Inference of a Dynamic Aging-related Biological Subnetwork via Network
Propagation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {974--988},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3022767},
doi = {10.1109/TCBB.2020.3022767},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/NewazM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/NguyenHLPO22,
author = {Trinh{-}Trung{-}Duong Nguyen and
Quang{-}Thai Ho and
Nguyen{-}Quoc{-}Khanh Le and
Van{-}Dinh Phan and
Yu{-}Yen Ou},
title = {Use Chou's 5-Steps Rule With Different Word Embedding Types to Boost
Performance of Electron Transport Protein Prediction Model},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {1235--1244},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3010975},
doi = {10.1109/TCBB.2020.3010975},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/NguyenHLPO22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/NguyenNLT22,
author = {Tri Minh Nguyen and
Thin Nguyen and
Thao Minh Le and
Truyen Tran},
title = {{GEFA:} Early Fusion Approach in Drug-Target Affinity Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {718--728},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3094217},
doi = {10.1109/TCBB.2021.3094217},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/NguyenNLT22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/NguyenNNL22,
author = {Tuan Nguyen and
Giang T. T. Nguyen and
Thin Nguyen and
Duc{-}Hau Le},
title = {Graph Convolutional Networks for Drug Response Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {146--154},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3060430},
doi = {10.1109/TCBB.2021.3060430},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/NguyenNNL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/NguyenTLPO22,
author = {Trinh{-}Trung{-}Duong Nguyen and
The{-}Anh Tran and
Nguyen{-}Quoc{-}Khanh Le and
Dinh{-}Minh Pham and
Yu{-}Yen Ou},
title = {An Extensive Examination of Discovering 5-Methylcytosine Sites in
Genome-Wide {DNA} Promoters Using Machine Learning Based Approaches},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {87--94},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3082184},
doi = {10.1109/TCBB.2021.3082184},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/NguyenTLPO22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/NguyenVL22,
author = {Giang T. T. Nguyen and
Hoa D. Vu and
Duc{-}Hau Le},
title = {Integrating Molecular Graph Data of Drugs and Multiple -Omic Data
of Cell Lines for Drug Response Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {710--717},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3096960},
doi = {10.1109/TCBB.2021.3096960},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/NguyenVL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/NiGZSHG22,
author = {Xinzhe Ni and
Bohao Geng and
Haoyu Zheng and
Jiawei Shi and
Gang Hu and
Jianzhao Gao},
title = {Accurate Estimation of Single-Cell Differentiation Potency Based on
Network Topology and Gene Ontology Information},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3255--3262},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3112951},
doi = {10.1109/TCBB.2021.3112951},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/NiGZSHG22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/NiZZZ22,
author = {Zhijie Ni and
Xiaoying Zheng and
Xiao Zheng and
Xiufen Zou},
title = {scLRTD : {A} Novel Low Rank Tensor Decomposition Method for Imputing
Missing Values in Single-Cell Multi-Omics Sequencing Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {1144--1153},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3025804},
doi = {10.1109/TCBB.2020.3025804},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/NiZZZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/NigmatullinSB22,
author = {Raoul R. Nigmatullin and
Samyadip Sarkar and
Karabi Biswas},
title = {The Detection of Self-Similar/Branching Processes in Complex Biological
Systems: Analysis of the Temporal Evolution of Impedance Measurements
in Tulsi (Holy Basil) Leaves "Ocimumtenuiflorum"},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {3038--3047},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3107323},
doi = {10.1109/TCBB.2021.3107323},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/NigmatullinSB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/NingMZY22,
author = {Qiao Ning and
Zhiqiang Ma and
Xiaowei Zhao and
Minghao Yin},
title = {SSKM{\_}Succ: {A} Novel Succinylation Sites Prediction Method Incorporating
K-Means Clustering With a New Semi-Supervised Learning Algorithm},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {643--652},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3006144},
doi = {10.1109/TCBB.2020.3006144},
timestamp = {Sat, 06 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/NingMZY22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/NingZM22,
author = {Qiao Ning and
Xiaowei Zhao and
Zhiqiang Ma},
title = {A Novel Method for Identification of Glutarylation Sites Combining
Borderline-SMOTE With Tomek Links Technique in Imbalanced Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2632--2641},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3095482},
doi = {10.1109/TCBB.2021.3095482},
timestamp = {Sat, 06 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/NingZM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/NiuZ22,
author = {Mengting Niu and
Quan Zou},
title = {SgRNA-RF: Identification of SgRNA On-Target Activity With Imbalanced
Datasets},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2442--2453},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3079116},
doi = {10.1109/TCBB.2021.3079116},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/NiuZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/NouraniAMM22,
author = {Esmaeil Nourani and
Ehsaneddin Asgari and
Alice C. McHardy and
Mohammad R. K. Mofrad},
title = {TripletProt: Deep Representation Learning of Proteins Based On Siamese
Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3744--3753},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3108718},
doi = {10.1109/TCBB.2021.3108718},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/NouraniAMM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/OlgunT22,
author = {Gulden Olgun and
{\"{O}}znur Tastan},
title = {miRCoop: Identifying Cooperating miRNAs via Kernel Based Interaction
Tests},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1760--1771},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3047901},
doi = {10.1109/TCBB.2020.3047901},
timestamp = {Sat, 20 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/OlgunT22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PaltunKM22,
author = {Bet{\"{u}}l G{\"{u}}ven{\c{c}} Paltun and
Samuel Kaski and
Hiroshi Mamitsuka},
title = {{DIVERSE:} Bayesian Data IntegratiVE Learning for Precise Drug ResponSE
Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2197--2207},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3065535},
doi = {10.1109/TCBB.2021.3065535},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PaltunKM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PanCLNHC22,
author = {Xiaoyong Pan and
Lei Chen and
Min Liu and
Zhibin Niu and
Tao Huang and
Yu{-}Dong Cai},
title = {Identifying Protein Subcellular Locations With Embeddings-Based node2loc},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {666--675},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3080386},
doi = {10.1109/TCBB.2021.3080386},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PanCLNHC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PanHHY22,
author = {Xiangyu Pan and
Lun Hu and
Pengwei Hu and
Zhu{-}Hong You},
title = {Identifying Protein Complexes From Protein-Protein Interaction Networks
Based on Fuzzy Clustering and {GO} Semantic Information},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2882--2893},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3095947},
doi = {10.1109/TCBB.2021.3095947},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PanHHY22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PangL22,
author = {Yihe Pang and
Bin Liu},
title = {SelfAT-Fold: Protein Fold Recognition Based on Residue-Based and Motif-Based
Self-Attention Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1861--1869},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3031888},
doi = {10.1109/TCBB.2020.3031888},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PangL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ParkLH22,
author = {Byungkyu Park and
Wook Lee and
Kyungsook Han},
title = {A New Approach to Deriving Prognostic Gene Pairs From Cancer Patient-Specific
Gene Correlation Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1267--1276},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3017209},
doi = {10.1109/TCBB.2020.3017209},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ParkLH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ParviniBF22,
author = {Ghazaleh Parvini and
Katherine Braught and
David Fern{\'{a}}ndez{-}Baca},
title = {Checking Phylogenetics Decisiveness in Theory and in Practice},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3307--3316},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3128381},
doi = {10.1109/TCBB.2021.3128381},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ParviniBF22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PaulA22,
author = {Madhusudan Paul and
Ashish Anand},
title = {A New Family of Similarity Measures for Scoring Confidence of Protein
Interactions Using Gene Ontology},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {19--30},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3083150},
doi = {10.1109/TCBB.2021.3083150},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PaulA22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PengWTZL22,
author = {Lihong Peng and
Chang Wang and
Xiongfei Tian and
Liqian Zhou and
Keqin Li},
title = {Finding lncRNA-Protein Interactions Based on Deep Learning With Dual-Net
Neural Architecture},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3456--3468},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3116232},
doi = {10.1109/TCBB.2021.3116232},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PengWTZL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PengYRLZX22,
author = {Keqin Peng and
Chuantao Yin and
Wenge Rong and
Chenghua Lin and
Deyu Zhou and
Zhang Xiong},
title = {Named Entity Aware Transfer Learning for Biomedical Factoid Question
Answering},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2365--2376},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3079339},
doi = {10.1109/TCBB.2021.3079339},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PengYRLZX22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PengZJWLCW22,
author = {Peng Peng and
Yipu Zhang and
Yongfeng Ju and
Kaiming Wang and
Gang Li and
Vince D. Calhoun and
Yu{-}Ping Wang},
title = {Group Sparse Joint Non-Negative Matrix Factorization on Orthogonal
Subspace for Multi-Modal Imaging Genetics Data Analysis},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {479--490},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.2999397},
doi = {10.1109/TCBB.2020.2999397},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PengZJWLCW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PengZZ22,
author = {Chunxiang Peng and
Xiao{-}Gen Zhou and
Gui{-}Jun Zhang},
title = {De novo Protein Structure Prediction by Coupling Contact With Distance
Profile},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {395--406},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3000758},
doi = {10.1109/TCBB.2020.3000758},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PengZZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PinoliCCM22,
author = {Pietro Pinoli and
Gaia Ceddia and
Stefano Ceri and
Marco Masseroli},
title = {Predicting Drug Synergism by Means of Non-Negative Matrix Tri-Factorization},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {1956--1967},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3091814},
doi = {10.1109/TCBB.2021.3091814},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PinoliCCM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Poleksic22,
author = {Aleksandar Poleksic},
title = {Overcoming Sparseness of Biomedical Networks to Identify Drug Repositioning
Candidates},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2377--2384},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3059807},
doi = {10.1109/TCBB.2021.3059807},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Poleksic22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Ponte-Fernandez22,
author = {Christian Ponte{-}Fern{\'{a}}ndez and
Jorge Gonz{\'{a}}lez{-}Dom{\'{\i}}nguez and
Antonio Carvajal{-}Rodr{\'{\i}}guez and
Mar{\'{\i}}a J. Mart{\'{\i}}n},
title = {Evaluation of Existing Methods for High-Order Epistasis Detection},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {912--926},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3030312},
doi = {10.1109/TCBB.2020.3030312},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Ponte-Fernandez22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PouryahyaOJMBDT22,
author = {Maryam Pouryahya and
Jung Hun Oh and
Pedram Javanmard and
James C. Mathews and
Zehor Belkhatir and
Joseph O. Deasy and
Allen R. Tannenbaum},
title = {aWCluster: {A} Novel Integrative Network-Based Clustering of Multiomics
for Subtype Analysis of Cancer Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1472--1483},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3039511},
doi = {10.1109/TCBB.2020.3039511},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PouryahyaOJMBDT22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PrashanthSBADSA22,
author = {Tejas Prashanth and
Snehanshu Saha and
Sumedh Basarkod and
Suraj Aralihalli and
Soma S. Dhavala and
Sriparna Saha and
Raviprasad Aduri},
title = {LipGene: Lipschitz Continuity Guided Adaptive Learning Rates for Fast
Convergence on Microarray Expression Data Sets},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3553--3563},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3110516},
doi = {10.1109/TCBB.2021.3110516},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PrashanthSBADSA22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PuLTG22,
author = {Yuqian Pu and
Jiawei Li and
Jijun Tang and
Fei Guo},
title = {DeepFusionDTA: Drug-Target Binding Affinity Prediction With Information
Fusion and Hybrid Deep-Learning Ensemble Model},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2760--2769},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3103966},
doi = {10.1109/TCBB.2021.3103966},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PuLTG22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PursalimK22,
author = {Mahdi Pursalim and
Kwoh Chee Keong},
title = {An Efficient Multiresolution Clustering for Motif Discovery in Complex
Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {284--294},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3003018},
doi = {10.1109/TCBB.2020.3003018},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PursalimK22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/QianLYWCY22,
author = {Subin Qian and
Huiyi Liu and
Xiaofeng Yuan and
Wei Wei and
Shuangshuang Chen and
Hong Yan},
title = {Row and Column Structure-Based Biclustering for Gene Expression Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {1117--1129},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3022085},
doi = {10.1109/TCBB.2020.3022085},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/QianLYWCY22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/QianLZZ22,
author = {Ying Qian and
Xuelian Li and
Qian Zhang and
Jiongmin Zhang},
title = {{SPP-CPI:} Predicting Compound-Protein Interactions Based On Neural
Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {40--47},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3084397},
doi = {10.1109/TCBB.2021.3084397},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/QianLZZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/QinZLXL22,
author = {Xinyi Qin and
Lu Zhang and
Min Liu and
Ziwei Xu and
Guangzhong Liu},
title = {ASFold-DNN: Protein Fold Recognition Based on Evolutionary Features
With Variable Parameters Using Full Connected Neural Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2712--2722},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3089168},
doi = {10.1109/TCBB.2021.3089168},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/QinZLXL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/QiuZDLZ22,
author = {Yang Qiu and
Yang Zhang and
Yifan Deng and
Shichao Liu and
Wen Zhang},
title = {A Comprehensive Review of Computational Methods For Drug-Drug Interaction
Detection},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {1968--1985},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3081268},
doi = {10.1109/TCBB.2021.3081268},
timestamp = {Fri, 01 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/QiuZDLZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/QuanSWMHHNCL22,
author = {Lijun Quan and
Xiaoyu Sun and
Jian Wu and
Jie Mei and
Liqun Huang and
Ruji He and
Liangpeng Nie and
Yu Chen and
Qiang Lyu},
title = {Learning Useful Representations of {DNA} Sequences From ChIP-Seq Datasets
for Exploring Transcription Factor Binding Specificities},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {998--1008},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3026787},
doi = {10.1109/TCBB.2020.3026787},
timestamp = {Fri, 28 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/QuanSWMHHNCL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/QureshiGY22,
author = {Rizwan Qureshi and
Avirup Ghosh and
Hong Yan},
title = {Correlated Motions and Dynamics in Different Domains of Epidermal
Growth Factor Receptor With {L858R} and {T790M} Mutations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {383--394},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.2995569},
doi = {10.1109/TCBB.2020.2995569},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/QureshiGY22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/RaiSM22,
author = {Priyadarshini Rai and
Debarka Sengupta and
Angshul Majumdar},
title = {SelfE: Gene Selection via Self-Expression for Single-Cell Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {624--632},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.2997326},
doi = {10.1109/TCBB.2020.2997326},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/RaiSM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/RanjanFTD22,
author = {Ashish Ranjan and
David Fern{\'{a}}ndez{-}Baca and
Sudhakar Tripathi and
Akshay Deepak},
title = {An Ensemble Tf-Idf Based Approach to Protein Function Prediction via
Sequence Segmentation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2685--2696},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3093060},
doi = {10.1109/TCBB.2021.3093060},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/RanjanFTD22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/RazzakN22,
author = {Imran Razzak and
Saeeda Naz},
title = {Unit-Vise: Deep Shallow Unit-Vise Residual Neural Networks With Transition
Layer For Expert Level Skin Cancer Classification},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {1225--1234},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3039358},
doi = {10.1109/TCBB.2020.3039358},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/RazzakN22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/RenSVADK22,
author = {Yuanfang Ren and
Aisharjya Sarkar and
Pierangelo Veltri and
Ahmet Ay and
Alin Dobra and
Tamer Kahveci},
title = {Pattern Discovery in Multilayer Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {741--752},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3105001},
doi = {10.1109/TCBB.2021.3105001},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/RenSVADK22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/RezaeiLWLL22,
author = {Mohammad A. Rezaei and
Yanjun Li and
Dapeng Wu and
Xiaolin Li and
Chenglong Li},
title = {Deep Learning in Drug Design: Protein-Ligand Binding Affinity Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {407--417},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3046945},
doi = {10.1109/TCBB.2020.3046945},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/RezaeiLWLL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SangLCZ22,
author = {Shengtian Sang and
Xiaoxia Liu and
Xiaoyu Chen and
Di Zhao},
title = {A Scalable Embedding Based Neural Network Method for Discovering Knowledge
From Biomedical Literature},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1294--1301},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3003947},
doi = {10.1109/TCBB.2020.3003947},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SangLCZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SanyalKS22,
author = {Ritabrata Sanyal and
Devroop Kar and
Ram Sarkar},
title = {Carcinoma Type Classification From High-Resolution Breast Microscopy
Images Using a Hybrid Ensemble of Deep Convolutional Features and
Gradient Boosting Trees Classifiers},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2124--2136},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3071022},
doi = {10.1109/TCBB.2021.3071022},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SanyalKS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SarafDSHLBMW22,
author = {Radhika Saraf and
Aniruddha Datta and
Chao Sima and
Jianping Hua and
Rosana Lopes and
Michael L. Bittner and
Tasha Miller and
Heather M. Wilson{-}Robles},
title = {In Silico Modeling of the Induction of Apoptosis by Cryptotanshinone
in Osteosarcoma Cell Lines},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1683--1693},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3037318},
doi = {10.1109/TCBB.2020.3037318},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SarafDSHLBMW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SaremiA22,
author = {Mehrzad Saremi and
Maryam Amirmazlaghani},
title = {Reconstruction of Gene Regulatory Networks Using Multiple Datasets},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1827--1839},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3057241},
doi = {10.1109/TCBB.2021.3057241},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SaremiA22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SarkarMK22,
author = {Aisharjya Sarkar and
Prabhat Mishra and
Tamer Kahveci},
title = {Data Perturbation and Recovery of Time Series Gene Expression Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {830--842},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3058342},
doi = {10.1109/TCBB.2021.3058342},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SarkarMK22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SchapkeTM22,
author = {Jo{\~{a}}o Schapke and
Anderson R. Tavares and
Mariana Recamonde Mendoza},
title = {{EPGAT:} Gene Essentiality Prediction With Graph Attention Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1615--1626},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3054738},
doi = {10.1109/TCBB.2021.3054738},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SchapkeTM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SeaboltNKABTKKR22,
author = {Edward E. Seabolt and
Gowri Nayar and
Harsha Krishnareddy and
Akshay Agarwal and
Kristen L. Beck and
Ignacio Terrizzano and
Eser Kandogan and
Mark Kunitomi and
Mary Roth and
Vandana V. Mukherjee and
James H. Kaufman},
title = {Functional Genomics Platform, {A} Cloud-Based Platform for Studying
Microbial Life at Scale},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {940--952},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3021231},
doi = {10.1109/TCBB.2020.3021231},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SeaboltNKABTKKR22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Sefer22,
author = {Emre Sefer},
title = {BioCode: {A} Data-Driven Procedure to Learn the Growth of Biological
Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3103--3113},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2022.3165092},
doi = {10.1109/TCBB.2022.3165092},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Sefer22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SemwalARV22,
author = {Rahul Semwal and
Imlimaong Aier and
Utkarsh Raj and
Pritish Kumar Varadwaj},
title = {Pr[m]: An Algorithm for Protein Motif Discovery},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {585--592},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.2999262},
doi = {10.1109/TCBB.2020.2999262},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SemwalARV22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ShahM22,
author = {Ekta Shah and
Pradipta Maji},
title = {Scalable Non-Linear Graph Fusion for Prioritizing Cancer-Causing Genes},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {1130--1143},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3026219},
doi = {10.1109/TCBB.2020.3026219},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ShahM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ShaoCL22,
author = {Jiangyi Shao and
Junjie Chen and
Bin Liu},
title = {ProtRe-CN: Protein Remote Homology Detection by Combining Classification
Methods and Network Methods via Learning to Rank},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3655--3662},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3108168},
doi = {10.1109/TCBB.2021.3108168},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ShaoCL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SharmaKSATV22,
author = {Anju Sharma and
Rajnish Kumar and
Rahul Semwal and
Imlimaong Aier and
Pankaj Tyagi and
Pritish Kumar Varadwaj},
title = {DeepOlf: Deep Neural Network Based Architecture for Predicting Odorants
and Their Interacting Olfactory Receptors},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {418--428},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3002154},
doi = {10.1109/TCBB.2020.3002154},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SharmaKSATV22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ShenK22,
author = {Yiqing Shen and
Jing Ke},
title = {Sampling Based Tumor Recognition in Whole-Slide Histology Image With
Deep Learning Approaches},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2431--2441},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3062230},
doi = {10.1109/TCBB.2021.3062230},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ShenK22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ShenZHH22,
author = {Zhen Shen and
Qinhu Zhang and
Kyungsook Han and
De{-}Shuang Huang},
title = {A Deep Learning Model for RNA-Protein Binding Preference Prediction
Based on Hierarchical {LSTM} and Attention Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {753--762},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3007544},
doi = {10.1109/TCBB.2020.3007544},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ShenZHH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ShettaND22,
author = {Omar Shetta and
Mahesan Niranjan and
Srinandan Dasmahapatra},
title = {Convex Multi-View Clustering Via Robust Low Rank Approximation With
Application to Multi-Omic Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3340--3352},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3122961},
doi = {10.1109/TCBB.2021.3122961},
timestamp = {Sun, 06 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ShettaND22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ShiLRZW22,
author = {Feng Shi and
Hangcheng Li and
Guozhen Rong and
Zhen Zhang and
Jianxin Wang},
title = {Improved Fixed-Parameter Algorithm for the Tree Containment Problem
on Unrooted Phylogenetic Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3539--3552},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3111660},
doi = {10.1109/TCBB.2021.3111660},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ShiLRZW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SibaiEAM22,
author = {Fadi N. Sibai and
Ali El{-}Moursy and
Abu Asaduzzaman and
Sohaib Majzoub},
title = {Hardware Acceleration of the {STRIKE} String Kernel Algorithm for
Estimating Protein to Protein Interactions},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2272--2283},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3066591},
doi = {10.1109/TCBB.2021.3066591},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SibaiEAM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SilvaS22,
author = {Ana B. O. V. Silva and
Eduardo Jaques Spinosa},
title = {Graph Convolutional Auto-Encoders for Predicting Novel lncRNA-Disease
Associations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2264--2271},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3070910},
doi = {10.1109/TCBB.2021.3070910},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SilvaS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SinhaPD22,
author = {Rituparna Sinha and
Rajat Kumar Pal and
Rajat K. De},
title = {GenSeg and MR-GenSeg: {A} Novel Segmentation Algorithm and its Parallel
MapReduce Based Approach for Identifying Genomic Regions With Copy
Number Variations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {443--454},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3000661},
doi = {10.1109/TCBB.2020.3000661},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SinhaPD22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SongCZYLX22,
author = {Yingying Song and
Hui Cui and
Tiangang Zhang and
Tingxiao Yang and
Xiaokun Li and
Ping Xuan},
title = {Prediction of Drug-Related Diseases Through Integrating Pairwise Attributes
and Neighbor Topological Structures},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2963--2974},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3089692},
doi = {10.1109/TCBB.2021.3089692},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SongCZYLX22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SongLSA22,
author = {Xiaona Song and
Xingru Li and
Shuai Song and
Choon Ki Ahn},
title = {State Observer Design of Coupled Genetic Regulatory Networks With
Reaction-Diffusion Terms via Time-Space Sampled-Data Communications},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3704--3714},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3114405},
doi = {10.1109/TCBB.2021.3114405},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SongLSA22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SongPW22,
author = {Junrong Song and
Wei Peng and
Feng Wang},
title = {Identifying Cancer Patient Subgroups by Finding Co-Modules From the
Driver Mutation Profiles and Downstream Gene Expression Profiles},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2863--2872},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3106344},
doi = {10.1109/TCBB.2021.3106344},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SongPW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SongTYYXZDD22,
author = {Jinmiao Song and
Shengwei Tian and
Long Yu and
Qimeng Yang and
Yan Xing and
Chao Zhang and
Qiguo Dai and
Xiaodong Duan},
title = {{MD-MLI:} Prediction of miRNA-lncRNA Interaction by Using Multiple
Features and Hierarchical Deep Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1724--1733},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3034922},
doi = {10.1109/TCBB.2020.3034922},
timestamp = {Wed, 09 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SongTYYXZDD22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SotudianP22,
author = {Shahabeddin Sotudian and
Ioannis Ch. Paschalidis},
title = {Machine Learning for Pharmacogenomics and Personalized Medicine: {A}
Ranking Model for Drug Sensitivity Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2324--2333},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3084562},
doi = {10.1109/TCBB.2021.3084562},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SotudianP22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/StoratoC22,
author = {Davide Storato and
Matteo Comin},
title = {K2Mem: Discovering Discriminative K-mers From Sequencing Data for
Metagenomic Reads Classification},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {220--229},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3117406},
doi = {10.1109/TCBB.2021.3117406},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/StoratoC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SuLCL22,
author = {Yuting Su and
Yao Lu and
Mei Chen and
An{-}An Liu},
title = {Deep Reinforcement Learning-Based Progressive Sequence Saliency Discovery
Network for Mitosis Detection In Time-Lapse Phase-Contrast Microscopy
Images},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {854--865},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3019042},
doi = {10.1109/TCBB.2020.3019042},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SuLCL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SunC22,
author = {Hsiao{-}Fang Sunny Sun and
Yi{-}Ping Phoebe Chen},
title = {Editorial},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {1--2},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3089195},
doi = {10.1109/TCBB.2021.3089195},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SunC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SunXZY22,
author = {Chang Sun and
Ping Xuan and
Tiangang Zhang and
Yilin Ye},
title = {Graph Convolutional Autoencoder and Generative Adversarial Network-Based
Method for Predicting Drug-Target Interactions},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {455--464},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.2999084},
doi = {10.1109/TCBB.2020.2999084},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SunXZY22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SunZZNLPY22,
author = {Zhe Sun and
Shuangjia Zheng and
Huiying Zhao and
Zhangming Niu and
Yutong Lu and
Yi Pan and
Yuedong Yang},
title = {To Improve Prediction of Binding Residues With DNA, RNA, Carbohydrate,
and Peptide Via Multi-Task Deep Neural Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3735--3743},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3118916},
doi = {10.1109/TCBB.2021.3118916},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SunZZNLPY22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/TanNB22,
author = {Yukun Tan and
Fernando B. Lima Neto and
Ulisses M. Braga{-}Neto},
title = {{PALLAS:} Penalized mAximum LikeLihood and pArticle Swarms for Inference
of Gene Regulatory Networks From Time Series Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1807--1816},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3037090},
doi = {10.1109/TCBB.2020.3037090},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/TanNB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/TanOJYZ22,
author = {Yuting Tan and
Le Ou{-}Yang and
Xingpeng Jiang and
Hong Yan and
Xiao{-}Fei Zhang},
title = {Identifying Gene Network Rewiring Based on Partial Correlation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {513--521},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3002906},
doi = {10.1109/TCBB.2020.3002906},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/TanOJYZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/TavernelliCV22,
author = {Daniele Tavernelli and
Tiziana Calamoneri and
Paola Vocca},
title = {Linear Time Reconciliation With Bounded Transfers of Genes},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {1009--1017},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3027207},
doi = {10.1109/TCBB.2020.3027207},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/TavernelliCV22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/TenekeciI22,
author = {Samet Tenekeci and
Zerrin Isik},
title = {Integrative Biological Network Analysis to Identify Shared Genes in
Metabolic Disorders},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {522--530},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.2993301},
doi = {10.1109/TCBB.2020.2993301},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/TenekeciI22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/TimilsinaKYd22,
author = {Mohan Timilsina and
Declan Patrick Mc Kernan and
Haixuan Yang and
Mathieu d'Aquin},
title = {Synergy Between Embedding and Protein Functional Association Networks
for Drug Label Prediction Using Harmonic Function},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {1203--1213},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3031696},
doi = {10.1109/TCBB.2020.3031696},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/TimilsinaKYd22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/TsagrisPLT22,
author = {Michail Tsagris and
Zacharias Papadovasilakis and
Kleanthi Lakiotaki and
Ioannis Tsamardinos},
title = {The {\textdollar}{\textbackslash}gamma{\textdollar}{\(\gamma\)}-OMP
Algorithm for Feature Selection With Application to Gene Expression
Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {1214--1224},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3029952},
doi = {10.1109/TCBB.2020.3029952},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/TsagrisPLT22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Tsui22,
author = {Stephen Kwok{-}Wing Tsui},
title = {Editorial},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1255--1256},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2022.3155845},
doi = {10.1109/TCBB.2022.3155845},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Tsui22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/UwiragiyeR22,
author = {Eugene Uwiragiye and
Kristen L. Rhinehardt},
title = {TFIDF-Random Forest: Prediction of Aptamer-Protein Interacting Pairs},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {3032--3037},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3098709},
doi = {10.1109/TCBB.2021.3098709},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/UwiragiyeR22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/VakilT22,
author = {Vahideh Vakil and
Wade Trappe},
title = {Drug-Resistant Cancer Treatment Strategies Based on the Dynamics of
Clonal Evolution and {PKPD} Modeling of Drug Combinations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1603--1614},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3045315},
doi = {10.1109/TCBB.2020.3045315},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/VakilT22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ViaudMC22,
author = {Gautier Viaud and
Prasanna Mayilvahanan and
Paul{-}Henry Courn{\`{e}}de},
title = {Representation Learning for the Clustering of Multi-Omics Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {135--145},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3060340},
doi = {10.1109/TCBB.2021.3060340},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ViaudMC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WalvePS22,
author = {Riku Walve and
Simon J. Puglisi and
Leena Salmela},
title = {Space-Efficient Indexing of Spaced Seeds for Accurate Overlap Computation
of Raw Optical Mapping Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2454--2462},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3085086},
doi = {10.1109/TCBB.2021.3085086},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WalvePS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Wang22,
author = {Meng Wang},
title = {Inherent Nonlinear Distribution of High-Dimensional Genotypic Data
Identified as a Possible Source of Confounding Factors in Population
Structure Analysis},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2305--2312},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3069503},
doi = {10.1109/TCBB.2021.3069503},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Wang22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangDLLW22,
author = {Fei Wang and
Yulian Ding and
Xiujuan Lei and
Bo Liao and
Fang{-}Xiang Wu},
title = {Identifying Gene Signatures for Cancer Drug Repositioning Based on
Sample Clustering},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {953--965},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3019781},
doi = {10.1109/TCBB.2020.3019781},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangDLLW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangDSDYY22,
author = {Zhaowei Wang and
Qiguo Dai and
Jinmiao Song and
Xiaodong Duan and
Hongpeng Yang and
Ziqi Yang},
title = {Predicting {RBP} Binding Sites of {RNA} With High-Order Encoding Features
and {CNN-BLSTM} Hybrid Model},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2409--2419},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3083930},
doi = {10.1109/TCBB.2021.3083930},
timestamp = {Thu, 06 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangDSDYY22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangGLKZ22,
author = {Chuan{-}Yuan Wang and
Ying{-}Lian Gao and
Jin{-}Xing Liu and
Xiang{-}Zhen Kong and
Chun{-}Hou Zheng},
title = {Single-Cell {RNA} Sequencing Data Clustering by Low-Rank Subspace
Ensemble Framework},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {1154--1164},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3029187},
doi = {10.1109/TCBB.2020.3029187},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangGLKZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangGYX22,
author = {Bin Wang and
Yongsheng Gao and
Xiaohui Yuan and
Shengwu Xiong},
title = {Local R-Symmetry Co-Occurrence: Characterising Leaf Image Patterns
for Identifying Cultivars},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {1018--1031},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3031280},
doi = {10.1109/TCBB.2020.3031280},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangGYX22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangGZZG22,
author = {Yujie Wang and
Tianhao Guan and
Gang Zhou and
Hongqian Zhao and
Jie Gao},
title = {{SOJNMF:} Identifying Multidimensional Molecular Regulatory Modules
by Sparse Orthogonality-Regularized Joint Non-Negative Matrix Factorization
Algorithm},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3695--3703},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3114146},
doi = {10.1109/TCBB.2021.3114146},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangGZZG22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangLLP22,
author = {Yueyue Wang and
Xiujuan Lei and
Cheng Lu and
Yi Pan},
title = {Predicting Microbe-Disease Association Based on Multiple Similarities
and {LINE} Algorithm},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2399--2408},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3082183},
doi = {10.1109/TCBB.2021.3082183},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangLLP22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangLMZ22,
author = {Conghua Wang and
Haihong Liu and
Zhonghua Miao and
Jin Zhou},
title = {Circadian Rhythm Regulated by Tumor Suppressor p53 and Time Delay
in Unstressed Cells},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1523--1530},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3040368},
doi = {10.1109/TCBB.2020.3040368},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangLMZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangLWJ22,
author = {Shiming Wang and
Jie Li and
Yadong Wang and
Liran Juan},
title = {A Neighborhood-Based Global Network Model to Predict Drug-Target Interactions},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2017--2025},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3064614},
doi = {10.1109/TCBB.2021.3064614},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangLWJ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangOYZ22,
author = {Meng{-}Guo Wang and
Le Ou{-}Yang and
Hong Yan and
Xiao{-}Fei Zhang},
title = {Inferring Gene Co-Expression Networks by Incorporating Prior Protein-Protein
Interaction Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2894--2906},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3103407},
doi = {10.1109/TCBB.2021.3103407},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangOYZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangPKTC22,
author = {Lei Wang and
Jiaxin Peng and
Linai Kuang and
Yihong Tan and
Zhiping Chen},
title = {Identification of Essential Proteins Based on Local Random Walk and
Adaptive Multi-View Multi-Label Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3507--3516},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3128638},
doi = {10.1109/TCBB.2021.3128638},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangPKTC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangW22,
author = {Pei Wang and
Daojie Wang},
title = {Gene Differential Co-Expression Networks Based on RNA-Seq: Construction
and Its Applications},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2829--2841},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3103280},
doi = {10.1109/TCBB.2021.3103280},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangWSWP22,
author = {Jing Wang and
Haitao Wang and
Hao Shen and
Bing Wang and
Ju H. Park},
title = {Finite-Time {\textdollar}{\textbackslash}mathcal \{H\}{\_}\{{\textbackslash}infty
\}{\textdollar}H{\(\infty\)} State Estimation for PDT-Switched Genetic
Regulatory Networks With Randomly Occurring Uncertainties},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1651--1660},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3040979},
doi = {10.1109/TCBB.2020.3040979},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangWSWP22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangZ22,
author = {Shuwen Wang and
Xingquan Zhu},
title = {Predictive Modeling of Hospital Readmission: Challenges and Solutions},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2975--2995},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3089682},
doi = {10.1109/TCBB.2021.3089682},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangZL22,
author = {Ning Wang and
Jun Zhang and
Bin Liu},
title = {{IDRBP-PPCT:} Identifying Nucleic Acid-Binding Proteins Based on Position-Specific
Score Matrix and Position-Specific Frequency Matrix Cross Transformation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2284--2293},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3069263},
doi = {10.1109/TCBB.2021.3069263},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangZL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangZRGY22,
author = {Jun Wang and
Huiling Zhang and
Wei Ren and
Maozu Guo and
Guoxian Yu},
title = {EpiMC: Detecting Epistatic Interactions Using Multiple Clusterings},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {243--254},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3080462},
doi = {10.1109/TCBB.2021.3080462},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangZRGY22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangZSFYL22,
author = {Yan Wang and
Lei Zhang and
Xin Shu and
Yangqin Feng and
Zhang Yi and
Qing Lv},
title = {Feature-Sensitive Deep Convolutional Neural Network for Multi-Instance
Breast Cancer Detection},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2241--2251},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3060183},
doi = {10.1109/TCBB.2021.3060183},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangZSFYL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangZSZ22,
author = {Hai{-}Yun Wang and
Jian{-}ping Zhao and
Yan{-}Sen Su and
Chun{-}Hou Zheng},
title = {scCDG: {A} Method Based on {DAE} and {GCN} for scRNA-Seq Data Analysis},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3685--3694},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3126641},
doi = {10.1109/TCBB.2021.3126641},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangZSZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangZZXYY22,
author = {Jun Wang and
Long Zhang and
An Zeng and
Dawen Xia and
Jiantao Yu and
Guoxian Yu},
title = {DeepIII: Predicting Isoform-Isoform Interactions by Deep Neural Networks
and Data Fusion},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2177--2187},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3068875},
doi = {10.1109/TCBB.2021.3068875},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangZZXYY22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Wickramarachchi22,
author = {Anuradha Wickramarachchi and
Yu Lin},
title = {GraphPlas: Refined Classification of Plasmid Sequences Using Assembly
Graphs},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {57--67},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3082915},
doi = {10.1109/TCBB.2021.3082915},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Wickramarachchi22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WuCXNZS22,
author = {Qing{-}Wen Wu and
Rui{-}Fen Cao and
Jun{-}Feng Xia and
Jian{-}Cheng Ni and
Chunhou Zheng and
Yan{-}Sen Su},
title = {Extra Trees Method for Predicting LncRNA-Disease Association Based
On Multi-Layer Graph Embedding Aggregation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3171--3178},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3113122},
doi = {10.1109/TCBB.2021.3113122},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WuCXNZS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/XieJS22,
author = {Guobo Xie and
Jiawei Jiang and
Yuping Sun},
title = {{LDA-LNSUBRW:} lncRNA-Disease Association Prediction Based on Linear
Neighborhood Similarity and Unbalanced bi-Random Walk},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {989--997},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3020595},
doi = {10.1109/TCBB.2020.3020595},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/XieJS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/XieLZW22,
author = {Yulian Xie and
Min Liu and
Shirui Zhou and
Yaonan Wang},
title = {A Deep Local Patch Matching Network for Cell Tracking in Microscopy
Image Sequences Without Registration},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3202--3212},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3113129},
doi = {10.1109/TCBB.2021.3113129},
timestamp = {Mon, 17 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/XieLZW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/XieYSDD22,
author = {Fansen Xie and
Ziqi Yang and
Jinmiao Song and
Qiguo Dai and
Xiaodong Duan},
title = {{DHNLDA:} {A} Novel Deep Hierarchical Network Based Method for Predicting
lncRNA-Disease Associations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3395--3403},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3113326},
doi = {10.1109/TCBB.2021.3113326},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/XieYSDD22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/XiongHWLZ22,
author = {Zhankun Xiong and
Feng Huang and
Ziyan Wang and
Shichao Liu and
Wen Zhang},
title = {A Multimodal Framework for Improving in Silico Drug Repositioning
With the Prior Knowledge From Knowledge Graphs},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2623--2631},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3103595},
doi = {10.1109/TCBB.2021.3103595},
timestamp = {Fri, 01 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/XiongHWLZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/XuXZCS22,
author = {Xiaoqiang Xu and
Ping Xuan and
Tiangang Zhang and
Bingxu Chen and
Nan Sheng},
title = {Inferring Drug-Target Interactions Based on Random Walk and Convolutional
Neural Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2294--2304},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3066813},
doi = {10.1109/TCBB.2021.3066813},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/XuXZCS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YadavJSE22,
author = {Shweta Yadav and
Srivatsa Ramesh Jayashree and
Sriparna Saha and
Asif Ekbal},
title = {Relation Extraction From Biomedical and Clinical Text: Unified Multitask
Learning Framework},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {1105--1116},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3020016},
doi = {10.1109/TCBB.2020.3020016},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YadavJSE22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YadavSS22,
author = {Yashpal Yadav and
Sanjeev Narayan Sharma and
Devendra Kumar Shakya},
title = {Detection of Tandem Repeats in {DNA} Sequences Using Short-Time Ramanujan
Fourier Transform},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1583--1591},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3053656},
doi = {10.1109/TCBB.2021.3053656},
timestamp = {Tue, 09 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YadavSS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YanDZWPW22,
author = {Cheng Yan and
Guihua Duan and
Yayan Zhang and
Fang{-}Xiang Wu and
Yi Pan and
Jianxin Wang},
title = {Predicting Drug-Drug Interactions Based on Integrated Similarity and
Semi-Supervised Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {168--179},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.2988018},
doi = {10.1109/TCBB.2020.2988018},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YanDZWPW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YanQBC22,
author = {Da Yan and
Zhaohui S. Qin and
Debswapna Bhattacharya and
Jake Y. Chen},
title = {Guest Editorial for Selected Papers From {BIOKDD} 2021},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3068--3069},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2022.3208759},
doi = {10.1109/TCBB.2022.3208759},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YanQBC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YanQWC22,
author = {Da Yan and
Hong Qin and
Hsiang{-}Yun Wu and
Jake Y. Chen},
title = {Guest Editorial for Selected Papers From {BIOKDD} 2020},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2545--2546},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2022.3176912},
doi = {10.1109/TCBB.2022.3176912},
timestamp = {Tue, 27 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/YanQWC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Yang22,
author = {Tzu{-}Hsien Yang},
title = {An Aggregation Method to Identify the {RNA} Meta-Stable Secondary
Structure and its Functionally Interpretable Structure Ensemble},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {75--86},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3082396},
doi = {10.1109/TCBB.2021.3082396},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Yang22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YangWCC22,
author = {Cheng{-}Hong Yang and
Kuo{-}Chuan Wu and
Li{-}Yeh Chuang and
Hsueh{-}Wei Chang},
title = {DeepBarcoding: Deep Learning for Species Classification Using {DNA}
Barcoding},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2158--2165},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3056570},
doi = {10.1109/TCBB.2021.3056570},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YangWCC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YangYLL22,
author = {Xuan Yang and
Chen Yang and
Jimeng Lei and
Jianxiao Liu},
title = {An Approach of Epistasis Detection Using Integer Linear Programming
Optimizing Bayesian Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2654--2671},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3092719},
doi = {10.1109/TCBB.2021.3092719},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YangYLL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YangYLWWMX22,
author = {Yuning Yang and
Jiawen Yu and
Zhe Liu and
Xi Wang and
Han Wang and
Zhiqiang Ma and
Dong Xu},
title = {An Improved Topology Prediction of Alpha-Helical Transmembrane Protein
Based on Deep Multi-Scale Convolutional Neural Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {295--304},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3005813},
doi = {10.1109/TCBB.2020.3005813},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YangYLWWMX22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YangZLCWSYLGZ22,
author = {Kuo Yang and
Yi Zheng and
Kezhi Lu and
Kai Chang and
Ning Wang and
Zixin Shu and
Jian Yu and
Baoyan Liu and
Zhuye Gao and
Xuezhong Zhou},
title = {PDGNet: Predicting Disease Genes Using a Deep Neural Network With
Multi-View Features},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {575--584},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3002771},
doi = {10.1109/TCBB.2020.3002771},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YangZLCWSYLGZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YangZLZWLC22,
author = {Yueran Yang and
Yu Zhang and
Shuai Li and
Xubin Zheng and
Man Hon Wong and
Kwong{-}Sak Leung and
Lixin Cheng},
title = {A Robust and Generalizable Immune-Related Signature for Sepsis Diagnostics},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3246--3254},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3107874},
doi = {10.1109/TCBB.2021.3107874},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YangZLZWLC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YeSBB22,
author = {Cheng Ye and
Rowan Swiers and
Stephen Bonner and
Ian P. Barrett},
title = {A Knowledge Graph-Enhanced Tensor Factorisation Model for Discovering
Drug Targets},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3070--3080},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2022.3197320},
doi = {10.1109/TCBB.2022.3197320},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YeSBB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YeWPLLWL22,
author = {Xiao Ye and
Yulin Wu and
Jiangsheng Pi and
Hong Li and
Bo Liu and
Yadong Wang and
Junyi Li},
title = {Deepgmd: {A} Graph-Neural-Network-Based Method to Detect Gene Regulator
Module},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3366--3373},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3114281},
doi = {10.1109/TCBB.2021.3114281},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YeWPLLWL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YehC22,
author = {Shan{-}Ju Yeh and
Bor{-}Sen Chen},
title = {Systems Medicine Design based on Systems Biology Approaches and Deep
Neural Network for Gastric Cancer},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {3019--3031},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3095369},
doi = {10.1109/TCBB.2021.3095369},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YehC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YellaJ22,
author = {Jaswanth K. Yella and
Anil G. Jegga},
title = {MGATRx: Discovering Drug Repositioning Candidates Using Multi-View
Graph Attention},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2596--2604},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3082466},
doi = {10.1109/TCBB.2021.3082466},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YellaJ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YinTZLK22,
author = {Rui Yin and
Nyi Nyi Thwin and
Pei Zhuang and
Zhuoyi Lin and
Chee Keong Kwoh},
title = {{IAV-CNN:} {A} 2D Convolutional Neural Network Model to Predict Antigenic
Variants of Influenza {A} Virus},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3497--3506},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3108971},
doi = {10.1109/TCBB.2021.3108971},
timestamp = {Wed, 17 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YinTZLK22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YinZWZ22,
author = {Qiang Yin and
Yanfen Zheng and
Bin Wang and
Qiang Zhang},
title = {Design of Constraint Coding Sets for Archive {DNA} Storage},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3384--3394},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3127271},
doi = {10.1109/TCBB.2021.3127271},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YinZWZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YuFYNLWLCLLH22,
author = {Ken Hung{-}On Yu and
Xiunan Fang and
Haobin Yao and
Bond Ng and
Tak Kwan Leung and
Ling{-}Ling Wang and
Chi Ho Lin and
Agnes Sze Wah Chan and
Wai Keung Leung and
Suet Yi Leung and
Joshua Wing Kei Ho},
title = {Evaluation of Experimental Protocols for Shotgun Whole-Genome Metagenomic
Discovery of Antibiotic Resistance Genes},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1313--1321},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3004063},
doi = {10.1109/TCBB.2020.3004063},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YuFYNLWLCLLH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YuHZGW22,
author = {Guoxian Yu and
Qiuyue Huang and
Xiangliang Zhang and
Maozu Guo and
Jun Wang},
title = {Tissue Specificity Based Isoform Function Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {3048--3059},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3093167},
doi = {10.1109/TCBB.2021.3093167},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YuHZGW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YuMZCW22,
author = {Changyong Yu and
Keming Mao and
Yuhai Zhao and
Cheng Chang and
Guoren Wang},
title = {StLiter: {A} Novel Algorithm to Iteratively Build the Compacted de
Bruijn Graph From Many Complete Genomes},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2471--2483},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3062068},
doi = {10.1109/TCBB.2021.3062068},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YuMZCW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YuYYGZW22,
author = {Guoxian Yu and
Yeqian Yang and
Yangyang Yan and
Maozu Guo and
Xiangliang Zhang and
Jun Wang},
title = {DeepIDA: Predicting Isoform-Disease Associations by Data Fusion and
Deep Neural Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2166--2176},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3058801},
doi = {10.1109/TCBB.2021.3058801},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YuYYGZW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YuZZMW22,
author = {Changyong Yu and
Yuhai Zhao and
Chu Zhao and
Haitao Ma and
Guoren Wang},
title = {DiagAF: {A} More Accurate and Efficient Pre-Alignment Filter for Sequence
Alignment},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3404--3415},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3127879},
doi = {10.1109/TCBB.2021.3127879},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YuZZMW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangCL22,
author = {Yiding Zhang and
Lyujie Chen and
Shao Li},
title = {{CIPHER-SC:} Disease-Gene Association Inference Using Graph Convolution
on a Context-Aware Network With Single-Cell Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {819--829},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3017547},
doi = {10.1109/TCBB.2020.3017547},
timestamp = {Sun, 22 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangCL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangCT22,
author = {Hu Zhang and
Jingsong Chen and
Tianhai Tian},
title = {Bayesian Inference of Stochastic Dynamic Models Using Early-Rejection
Methods Based on Sequential Stochastic Simulations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1484--1494},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3039490},
doi = {10.1109/TCBB.2020.3039490},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangCT22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangDZLQCHW22,
author = {Yidan Zhang and
Lei Duan and
Huiru Zheng and
Jesse Li{-}Ling and
Ruiqi Qin and
Zihao Chen and
Chengxin He and
Tingting Wang},
title = {Mining Similar Aspects for Gene Similarity Explanation Based on Gene
Information Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1734--1746},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3041559},
doi = {10.1109/TCBB.2020.3041559},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangDZLQCHW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangLZLZW22,
author = {Sai Zhang and
Jin Li and
Wei Zhou and
Tong Li and
Yang Zhang and
Jingru Wang},
title = {Higher-Order Proximity-Based MiRNA-Disease Associations Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {501--512},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.2994971},
doi = {10.1109/TCBB.2020.2994971},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangLZLZW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangSY22,
author = {Hua Zhang and
Guogen Shan and
Bailin Yang},
title = {Optimized Elastic Network Models With Direct Characterization of Inter-Residue
Cooperativity for Protein Dynamics},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {1064--1074},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3023147},
doi = {10.1109/TCBB.2020.3023147},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangSY22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangYG22,
author = {Yuan Zhang and
Fei Ye and
Xieping Gao},
title = {MCA-Net: Multi-Feature Coding and Attention Convolutional Neural Network
for Predicting lncRNA-Disease Association},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2907--2919},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3098126},
doi = {10.1109/TCBB.2021.3098126},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangYG22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangZQ22,
author = {Jiongmin Zhang and
Man Zhu and
Ying Qian},
title = {protein2vec: Predicting Protein-Protein Interactions Based on {LSTM}},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1257--1266},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3003941},
doi = {10.1109/TCBB.2020.3003941},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangZQ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangZWCGFH22,
author = {Qinhu Zhang and
Yindong Zhang and
Siguo Wang and
Zhan{-}Heng Chen and
Valeriya V. Gribova and
Vladimir Fedorovich Filaretov and
De{-}Shuang Huang},
title = {Predicting In-Vitro DNA-Protein Binding With a Spatially Aligned Fusion
of Sequence and Shape},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3144--3153},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3133869},
doi = {10.1109/TCBB.2021.3133869},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangZWCGFH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhaoCGSXHZ22,
author = {Yafeng Zhao and
Zhen Chen and
Xuan Gao and
Wenlong Song and
Qiang Xiong and
Junfeng Hu and
Zhichao Zhang},
title = {Plant Disease Detection Using Generated Leaves Based on DoubleGAN},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1817--1826},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3056683},
doi = {10.1109/TCBB.2021.3056683},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhaoCGSXHZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhaoFZL22,
author = {Jin Zhao and
Haodi Feng and
Daming Zhu and
Yu Lin},
title = {MultiTrans: An Algorithm for Path Extraction Through Mixed Integer
Linear Programming for Transcriptome Assembly},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {48--56},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3083277},
doi = {10.1109/TCBB.2021.3083277},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhaoFZL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhaoMKL22,
author = {Siyuan Zhao and
Jun Meng and
Qiang Kang and
Yushi Luan},
title = {Identifying LncRNA-Encoded Short Peptides Using Optimized Hybrid Features
and Ensemble Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2873--2881},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3104288},
doi = {10.1109/TCBB.2021.3104288},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/ZhaoMKL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhaoPY22,
author = {Ruzhang Zhao and
Shaojun Pei and
Stephen Shing{-}Toung Yau},
title = {New Genome Sequence Detection via Natural Vector Convex Hull Method},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1782--1793},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3040706},
doi = {10.1109/TCBB.2020.3040706},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhaoPY22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhaoSZSSSHW22,
author = {Fengpan Zhao and
Pavel Skums and
Alex Zelikovsky and
Eric L. Sevigny and
Monica Haavisto Swahn and
Sheryl M. Strasser and
Yan Huang and
Yubao Wu},
title = {Computational Approaches to Detect Illicit Drug Ads and Find Vendor
Communities Within Social Media Platforms},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {180--191},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.2978476},
doi = {10.1109/TCBB.2020.2978476},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhaoSZSSSHW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhaoYCLW22,
author = {Qichang Zhao and
Mengyun Yang and
Zhongjian Cheng and
Yaohang Li and
Jianxin Wang},
title = {Biomedical Data and Deep Learning Computational Models for Predicting
Compound-Protein Relations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {2092--2110},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3069040},
doi = {10.1109/TCBB.2021.3069040},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhaoYCLW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhaoZYJH22,
author = {Weizhong Zhao and
Jinyong Zhang and
Jincai Yang and
Xingpeng Jiang and
Tingting He},
title = {Document-Level Chemical-Induced Disease Relation Extraction via Hierarchical
Representation Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2782--2793},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3086090},
doi = {10.1109/TCBB.2021.3086090},
timestamp = {Thu, 28 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/ZhaoZYJH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhongG22,
author = {Wei Zhong and
Feng Gu},
title = {Predicting Local Protein 3D Structures Using Clustering Deep Recurrent
Neural Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {593--604},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3005972},
doi = {10.1109/TCBB.2020.3005972},
timestamp = {Fri, 03 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/ZhongG22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhouBK22,
author = {Anni Zhou and
Raheem Beyah and
Rishikesan Kamaleswaran},
title = {OnAI-Comp: An Online {AI} Experts Competing Framework for Early Sepsis
Detection},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3595--3603},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3122405},
doi = {10.1109/TCBB.2021.3122405},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhouBK22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhouJWXT22,
author = {Jieli Zhou and
Baoyu Jing and
Zeya Wang and
Hongyi Xin and
Hanghang Tong},
title = {{SODA:} Detecting {COVID-19} in Chest X-Rays With Semi-Supervised
Open Set Domain Adaptation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {5},
pages = {2605--2612},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3066331},
doi = {10.1109/TCBB.2021.3066331},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhouJWXT22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhouTY22,
author = {Lewei Zhou and
Yucong Tang and
Guiying Yan},
title = {A New Estimation Method for the Biological Interaction Predicting
Problems},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1415--1423},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3049642},
doi = {10.1109/TCBB.2021.3049642},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhouTY22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhouWTDG22,
author = {Haohao Zhou and
Hao Wang and
Jijun Tang and
Yijie Ding and
Fei Guo},
title = {Identify ncRNA Subcellular Localization via Graph Regularized {\textdollar}k{\textdollar}k-Local
Hyperplane Distance Nearest Neighbor Model on Multi-Kernel Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3517--3529},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3107621},
doi = {10.1109/TCBB.2021.3107621},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhouWTDG22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhuAZSHZNA22,
author = {Jianshen Zhu and
Naveed Ahmed Azam and
Fan Zhang and
Aleksandar Shurbevski and
Kazuya Haraguchi and
Liang Zhao and
Hiroshi Nagamochi and
Tatsuya Akutsu},
title = {A Novel Method for Inferring Chemical Compounds With Prescribed Topological
Substructures Based on Integer Programming},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {6},
pages = {3233--3245},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3112598},
doi = {10.1109/TCBB.2021.3112598},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhuAZSHZNA22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhuangLZW22,
author = {Yuanying Zhuang and
Xiangrong Liu and
Yue Zhong and
Longxin Wu},
title = {A Deep Ensemble Predictor for Identifying Anti-Hypertensive Peptides
Using Pretrained Protein Embedding},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {4},
pages = {1986--1992},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3068381},
doi = {10.1109/TCBB.2021.3068381},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhuangLZW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZouWZZ22,
author = {Chengye Zou and
Xiaopeng Wei and
Qiang Zhang and
Changjun Zhou},
title = {A Novel Adaptive Linear Neuron Based on {DNA} Strand Displacement
Reaction Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1424--1434},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3045567},
doi = {10.1109/TCBB.2020.3045567},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZouWZZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZouZW22,
author = {Chengye Zou and
Qiang Zhang and
Xiaopeng Wei},
title = {Synchronization of Hyper-Lorenz System Based on {DNA} Strand Displacement},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1897--1908},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3048753},
doi = {10.1109/TCBB.2020.3048753},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZouZW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZuanettiM22,
author = {Daiane Aparecida Zuanetti and
Lu{\'{\i}}s Aparecido Milan},
title = {Bayesian Modeling for Epistasis Analysis Using Data-Driven Reversible
Jump},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1495--1506},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3043857},
doi = {10.1109/TCBB.2020.3043857},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZuanettiM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AkmalHRKKC21,
author = {Muhammad Aizaz Akmal and
Waqar Hussain and
Nouman Rasool and
Yaser Daanial Khan and
Sher Afzal Khan and
Kuo{-}Chen Chou},
title = {Using CHOU'S 5-Steps Rule to Predict O-Linked Serine Glycosylation
Sites by Blending Position Relative Features and Statistical Moment},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {5},
pages = {2045--2056},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2968441},
doi = {10.1109/TCBB.2020.2968441},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AkmalHRKKC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AllenTX21,
author = {Daniel R. Allen and
Sharma V. Thankachan and
Bojian Xu},
title = {An Ultra-Fast and Parallelizable Algorithm for Finding {\textdollar}k{\textdollar}k-Mismatch
Shortest Unique Substrings},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {1},
pages = {138--148},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2968531},
doi = {10.1109/TCBB.2020.2968531},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AllenTX21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Aluru21,
author = {Srinivas Aluru},
title = {Editorial: From the New Editor-in-Chief},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2058},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2021.3108133},
doi = {10.1109/TCBB.2021.3108133},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Aluru21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AminMC21,
author = {Noorul Amin and
Annette McGrath and
Yi{-}Ping Phoebe Chen},
title = {FexRNA: Exploratory Data Analysis and Feature Selection of Non-Coding
{RNA}},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2795--2801},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2021.3057128},
doi = {10.1109/TCBB.2021.3057128},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AminMC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AnHCWW21,
author = {Ying An and
Nengjun Huang and
Xianlai Chen and
Fang{-}Xiang Wu and
Jianxin Wang},
title = {High-Risk Prediction of Cardiovascular Diseases via Attention-Based
Deep Neural Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {3},
pages = {1093--1105},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2935059},
doi = {10.1109/TCBB.2019.2935059},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AnHCWW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AngadiCSR21,
author = {Ulavappa B. Angadi and
Krishna Kumar Chaturvedi and
Sudhir Srivastava and
Anil Rai},
title = {A Novel Way of Comparing Protein 3D Structure Using Graph Partitioning
Approach},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {4},
pages = {1361--1368},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2938948},
doi = {10.1109/TCBB.2019.2938948},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AngadiCSR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AraghiN21,
author = {Sahar Araghi and
Thanh Nguyen},
title = {A Hybrid Supervised Approach to Human Population Identification Using
Genomics Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {2},
pages = {443--454},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2919501},
doi = {10.1109/TCBB.2019.2919501},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AraghiN21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AwaisHKRKC21,
author = {Muhammad Awais and
Waqar Hussain and
Yaser Daanial Khan and
Nouman Rasool and
Sher Afzal Khan and
Kuo{-}Chen Chou},
title = {iPhosH-PseAAC: Identify Phosphohistidine Sites in Proteins by Blending
Statistical Moments and Position Relative Features According to the
Chou's 5-Step Rule and General Pseudo Amino Acid Composition},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {2},
pages = {596--610},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2919025},
doi = {10.1109/TCBB.2019.2919025},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AwaisHKRKC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BanerjeePM21,
author = {Anupam Banerjee and
Kuntal Pal and
Pralay Mitra},
title = {An Evolutionary Profile Guided Greedy Parallel Replica-Exchange Monte
Carlo Search Algorithm for Rapid Convergence in Protein Design},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {2},
pages = {489--499},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2928809},
doi = {10.1109/TCBB.2019.2928809},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BanerjeePM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BankapurP21,
author = {Sanjay S. Bankapur and
Nagamma Patil},
title = {Enhanced Protein Structural Class Prediction Using Effective Feature
Modeling and Ensemble of Classifiers},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2409--2419},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2979430},
doi = {10.1109/TCBB.2020.2979430},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BankapurP21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BianJBR21,
author = {Ang Bian and
Xiaoyi Jiang and
Dimitri Berh and
Benjamin Risse},
title = {Resolving Colliding Larvae by Fitting {ASM} to Random Walker-Based
Pre-Segmentations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {3},
pages = {1184--1194},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2935718},
doi = {10.1109/TCBB.2019.2935718},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BianJBR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BiswasA21,
author = {Surama Biswas and
Sriyankar Acharyya},
title = {Multi-objective Simulated Annealing Variants to Infer Gene Regulatory
Network: {A} Comparative Study},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2612--2623},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2992304},
doi = {10.1109/TCBB.2020.2992304},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BiswasA21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BiswasMR21,
author = {Saikat Biswas and
Pabitra Mitra and
Krothapalli Sreenivasa Rao},
title = {Relation Prediction of Co-Morbid Diseases Using Knowledge Graph Completion},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {2},
pages = {708--717},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2927310},
doi = {10.1109/TCBB.2019.2927310},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BiswasMR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BiswasRB21,
author = {Sourav Biswas and
Sumanta Ray and
Sanghamitra Bandyopadhyay},
title = {Colored Network Motif Analysis by Dynamic Programming Approach: An
Application in Host Pathogen Interaction Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {2},
pages = {550--561},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2923173},
doi = {10.1109/TCBB.2019.2923173},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BiswasRB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BlancoSRFML21,
author = {Guillermo Blanco and
Borja S{\'{a}}nchez and
Lorena Ruiz and
Florentino Fdez{-}Riverola and
Abelardo Margolles and
An{\'{a}}lia Louren{\c{c}}o},
title = {Computational Approach to the Systematic Prediction of Glycolytic
Abilities: Looking Into Human Microbiota},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2302--2313},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2978461},
doi = {10.1109/TCBB.2020.2978461},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BlancoSRFML21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BokesHS21,
author = {Pavol Bokes and
Michal Hojcka and
Abhyudai Singh},
title = {MicroRNA Based Feedforward Control of Intrinsic Gene Expression Noise},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {1},
pages = {272--282},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2938502},
doi = {10.1109/TCBB.2019.2938502},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BokesHS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BouaskerIYD21,
author = {Souad Bouasker and
Wissem Inoubli and
Sadok Ben Yahia and
Gayo Diallo},
title = {Pregnancy Associated Breast Cancer Gene Expressions : New Insights
on Their Regulation Based on Rare Correlated Patterns},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {3},
pages = {1035--1048},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.3015236},
doi = {10.1109/TCBB.2020.3015236},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BouaskerIYD21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BreikCDHS21,
author = {Keenan Breik and
Cameron T. Chalk and
David Doty and
David Haley and
David Soloveichik},
title = {Programming Substrate-Independent Kinetic Barriers With Thermodynamic
Binding Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {1},
pages = {283--295},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2959310},
doi = {10.1109/TCBB.2019.2959310},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BreikCDHS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/CakmakC21,
author = {Ali Cakmak and
M. Hasan Celik},
title = {Personalized Metabolic Analysis of Diseases},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {3},
pages = {1014--1025},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.3008196},
doi = {10.1109/TCBB.2020.3008196},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/CakmakC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Carrillo-Cabada21,
author = {Hector Carrillo{-}Cabada and
Jeremy Benson and
Asghar M. Razavi and
Brianna Mulligan and
Michel A. Cuendet and
Harel Weinstein and
Michela Taufer and
Trilce Estrada},
title = {A Graphic Encoding Method for Quantitative Classification of Protein
Structure and Representation of Conformational Changes},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {4},
pages = {1336--1349},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2945291},
doi = {10.1109/TCBB.2019.2945291},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Carrillo-Cabada21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/CasanellasFG21,
author = {Marta Casanellas and
Jes{\'{u}}s Fern{\'{a}}ndez{-}S{\'{a}}nchez and
Marina Garrote{-}L{\'{o}}pez},
title = {{SAQ:} Semi-Algebraic Quartet Reconstruction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2855--2861},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2021.3101278},
doi = {10.1109/TCBB.2021.3101278},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/CasanellasFG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChakrabartyDBR21,
author = {Broto Chakrabarty and
Dibyajyoti Das and
Gopalakrishnan Bulusu and
Arijit Roy},
title = {Network-Based Analysis of Fatal Comorbidities of {COVID-19} and Potential
Therapeutics},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {4},
pages = {1271--1280},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2021.3075299},
doi = {10.1109/TCBB.2021.3075299},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChakrabartyDBR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChalkKRS21,
author = {Cameron T. Chalk and
Niels Kornerup and
Wyatt Reeves and
David Soloveichik},
title = {Composable Rate-Independent Computation in Continuous Chemical Reaction
Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {1},
pages = {250--260},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2952836},
doi = {10.1109/TCBB.2019.2952836},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChalkKRS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChaoHLLLTLC21,
author = {Kuan{-}Hao Chao and
Yi{-}Wen Hsiao and
Yi{-}Fang Lee and
Chien{-}Yueh Lee and
Liang{-}Chuan Lai and
Mong{-}Hsun Tsai and
Tzu{-}Pin Lu and
Eric Y. Chuang},
title = {RNASeqR: An {R} Package for Automated Two-Group RNA-Seq Analysis Workflow},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {5},
pages = {2023--2031},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2956708},
doi = {10.1109/TCBB.2019.2956708},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChaoHLLLTLC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChawlaMS21,
author = {Aman Chawla and
Salvatore D. Morgera and
Arthur Snider},
title = {On Axon Interaction and Its Role in Neurological Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {2},
pages = {790--796},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2941689},
doi = {10.1109/TCBB.2019.2941689},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChawlaMS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenCZWB21,
author = {Eric Chen and
Justin Chu and
Jessica Zhang and
Ren{\'{e}} L. Warren and
Inan{\c{c}} Birol},
title = {GapPredict - {A} Language Model for Resolving Gaps in Draft Genome
Assemblies},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2802--2808},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2021.3109557},
doi = {10.1109/TCBB.2021.3109557},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChenCZWB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenHL21,
author = {Dehua Chen and
Meihua Huang and
Weimin Li},
title = {Knowledge-Powered Deep Breast Tumor Classification With Multiple Medical
Reports},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {3},
pages = {891--901},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2955484},
doi = {10.1109/TCBB.2019.2955484},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChenHL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenHW21,
author = {Junyi Chen and
Junhui Hou and
Ka{-}Chun Wong},
title = {Categorical Matrix Completion With Active Learning for High-Throughput
Screening},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2261--2270},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2982142},
doi = {10.1109/TCBB.2020.2982142},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChenHW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenJHHQ21,
author = {Jiaojiao Chen and
Jianbo Jiao and
Shengfeng He and
Guoqiang Han and
Jing Qin},
title = {Few-Shot Breast Cancer Metastases Classification via Unsupervised
Cell Ranking},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {5},
pages = {1914--1923},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2960019},
doi = {10.1109/TCBB.2019.2960019},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChenJHHQ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenL21,
author = {Weiyang Chen and
Weiwei Li},
title = {Definition and Usage of Texture Feature for Biological Sequence},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {2},
pages = {773--776},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2973084},
doi = {10.1109/TCBB.2020.2973084},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChenL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenLLWCLCW21,
author = {Qingfeng Chen and
Dehuan Lai and
Wei Lan and
Ximin Wu and
Baoshan Chen and
Jin Liu and
Yi{-}Ping Phoebe Chen and
Jianxin Wang},
title = {{ILDMSF:} Inferring Associations Between Long Non-Coding {RNA} and
Disease Based on Multi-Similarity Fusion},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {3},
pages = {1106--1112},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2936476},
doi = {10.1109/TCBB.2019.2936476},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChenLLWCLCW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenWCJ21,
author = {Yiyuan Chen and
Yufeng Wang and
Liang Cao and
Qun Jin},
title = {{CCFS:} {A} Confidence-Based Cost-Effective Feature Selection Scheme
for Healthcare Data Classification},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {3},
pages = {902--911},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2903804},
doi = {10.1109/TCBB.2019.2903804},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChenWCJ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenYLGFCGW21,
author = {Jintai Chen and
Haochao Ying and
Xuechen Liu and
Jingjing Gu and
Ruiwei Feng and
Tingting Chen and
Honghao Gao and
Jian Wu},
title = {A Transfer Learning Based Super-Resolution Microscopy for Biopsy Slice
Images: The Joint Methods Perspective},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {1},
pages = {103--113},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2991173},
doi = {10.1109/TCBB.2020.2991173},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChenYLGFCGW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChiccoO21,
author = {Davide Chicco and
Luca Oneto},
title = {An Enhanced Random Forests Approach to Predict Heart Failure From
Small Imbalanced Gene Expression Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2759--2765},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.3041527},
doi = {10.1109/TCBB.2020.3041527},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChiccoO21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChouHCLH21,
author = {Hsin{-}Hung Chou and
Ching{-}Tien Hsu and
Li{-}Hsuan Chen and
Yue{-}Cheng Lin and
Sun{-}Yuan Hsieh},
title = {A Novel Branch-and-Bound Algorithm for the Protein Folding Problem
in the 3D {HP} Model},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {2},
pages = {455--462},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2934102},
doi = {10.1109/TCBB.2019.2934102},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChouHCLH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChowSECAK21,
author = {Kevin Chow and
Aisharjya Sarkar and
Rasha Elhesha and
Pietro Cinaglia and
Ahmet Ay and
Tamer Kahveci},
title = {{ANCA:} Alignment-Based Network Construction Algorithm},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {2},
pages = {512--524},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2923620},
doi = {10.1109/TCBB.2019.2923620},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChowSECAK21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/CuiHZJZWZC21,
author = {Chunmei Cui and
Chuanbo Huang and
Wanlu Zhou and
Xiangwen Ji and
Fenghong Zhang and
Liang Wang and
Yuan Zhou and
Qinghua Cui},
title = {AGTR2, One Possible Novel Key Gene for the Entry of SARS-CoV-2 Into
Human Cells},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {4},
pages = {1230--1233},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.3009099},
doi = {10.1109/TCBB.2020.3009099},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/CuiHZJZWZC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DaiDZZHZ21,
author = {Suyang Dai and
Yuxia Ding and
Zihan Zhang and
Wenxuan Zuo and
Xiaodi Huang and
Shanfeng Zhu},
title = {GrantExtractor: Accurate Grant Support Information Extraction from
Biomedical Fulltext Based on Bi-LSTM-CRF},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {1},
pages = {205--215},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2939128},
doi = {10.1109/TCBB.2019.2939128},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DaiDZZHZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DaiYZY21,
author = {Jiaan Dai and
Fengchao Yu and
Chen Zhou and
Weichuan Yu},
title = {Understanding the Limit of Open Search in the Identification of Peptides
With Post-translational Modifications - {A} Simulation-Based Study},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2884--2890},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2991207},
doi = {10.1109/TCBB.2020.2991207},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DaiYZY21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DavidovHJMMMOQR21,
author = {Nathan Davidov and
Amanda Hernandez and
Justin Jian and
Patrick McKenna and
K. A. Medlin and
Roadra Mojumder and
Megan Owen and
Andrew Quijano and
Amanda Rodriguez and
Katherine St. John and
Katherine Thai and
Meliza Uraga},
title = {Maximum Covering Subtrees for Phylogenetic Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2823--2827},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.3040910},
doi = {10.1109/TCBB.2020.3040910},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DavidovHJMMMOQR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DebnathS21,
author = {Tathagata Debnath and
Mingzhou Song},
title = {Fast Optimal Circular Clustering and Applications on Round Genomes},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2061--2071},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2021.3077573},
doi = {10.1109/TCBB.2021.3077573},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DebnathS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DengLZ21,
author = {Lei Deng and
Wenkai Li and
Jingpu Zhang},
title = {{LDAH2V:} Exploring Meta-Paths Across Multiple Networks for lncRNA-Disease
Association Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {4},
pages = {1572--1581},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2946257},
doi = {10.1109/TCBB.2019.2946257},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DengLZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DingLOLXL21,
author = {Pingjian Ding and
Cheng Liang and
Wenjue Ouyang and
Guanghui Li and
Qiu Xiao and
Jiawei Luo},
title = {Inferring Synergistic Drug Combinations Based on Symmetric Meta-Path
in a Novel Heterogeneous Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {4},
pages = {1562--1571},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2951557},
doi = {10.1109/TCBB.2019.2951557},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DingLOLXL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DingTG21,
author = {Yijie Ding and
Jijun Tang and
Fei Guo},
title = {Protein Crystallization Identification via Fuzzy Model on Linear Neighborhood
Representation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {5},
pages = {1986--1995},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2954826},
doi = {10.1109/TCBB.2019.2954826},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DingTG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DuLYRHSGS21,
author = {Lei Du and
Kefei Liu and
Xiaohui Yao and
Shannon L. Risacher and
Junwei Han and
Andrew J. Saykin and
Lei Guo and
Li Shen},
title = {Multi-Task Sparse Canonical Correlation Analysis with Application
to Multi-Modal Brain Imaging Genetics},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {1},
pages = {227--239},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2947428},
doi = {10.1109/TCBB.2019.2947428},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DuLYRHSGS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DuOKMLGTLW21,
author = {Haoxing Du and
Yi Sheng Ong and
Marina Knittel and
Ross Mawhorter and
Nuo Liu and
Gianluca Gross and
Reiko Tojo and
Ran Libeskind{-}Hadas and
Yi{-}Chieh Wu},
title = {Multiple Optimal Reconciliations Under the Duplication-Loss-Coalescence
Model},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2144--2156},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2922337},
doi = {10.1109/TCBB.2019.2922337},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DuOKMLGTLW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DunnKY21,
author = {Sara{-}Jane Dunn and
Hillel Kugler and
Boyan Yordanov},
title = {Formal Analysis of Network Motifs Links Structure to Function in Biological
Programs},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {1},
pages = {261--271},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2948157},
doi = {10.1109/TCBB.2019.2948157},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DunnKY21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ErG21,
author = {F{\"{u}}sun Er and
Dionysis Goularas},
title = {Predicting the Prognosis of {MCI} Patients Using Longitudinal {MRI}
Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {3},
pages = {1164--1173},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.3017872},
doi = {10.1109/TCBB.2020.3017872},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ErG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/FangSNF21,
author = {Qiong Fang and
Dewei Su and
Wilfred Ng and
Jianlin Feng},
title = {An Effective Biclustering-Based Framework for Identifying Cell Subpopulations
From scRNA-seq Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2249--2260},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2979717},
doi = {10.1109/TCBB.2020.2979717},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/FangSNF21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/FengDLLHW21,
author = {Tianshu Feng and
Jaime I. D{\'{a}}vila and
Yuanhang Liu and
Sangdi Lin and
Shuai Huang and
Chen Wang},
title = {Semi-Supervised Topological Analysis for Elucidating Hidden Structures
in High-Dimensional Transcriptome Datasets},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {4},
pages = {1620--1631},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2950657},
doi = {10.1109/TCBB.2019.2950657},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/FengDLLHW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GaggarKM21,
author = {Payal Gaggar and
Manish Kumar and
Kunal Mukhopadhyay},
title = {Genome-Scale Identification, in Silico Characterization and Interaction
Study Between Wheat {SNARE} and {NPSN} Gene Families Involved in Vesicular
Transport},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2492--2501},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2981896},
doi = {10.1109/TCBB.2020.2981896},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GaggarKM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GaoTLWSH21,
author = {Jianliang Gao and
Ling Tian and
Tengfei Lv and
Jianxin Wang and
Bo Song and
Xiaohua Hu},
title = {Protein2Vec: Aligning Multiple {PPI} Networks with Representation
Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {1},
pages = {240--249},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2937771},
doi = {10.1109/TCBB.2019.2937771},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GaoTLWSH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GeRDTCGC21,
author = {Yan Ge and
Philipp Rosendahl and
Claudio Dur{\'{a}}n and
Nicole T{\"{o}}pfner and
Sara Ciucci and
Jochen R. Guck and
Carlo Vittorio Cannistraci},
title = {Cell Mechanics Based Computational Classification of Red Blood Cells
Via Machine Intelligence Applied to Morpho-Rheological Markers},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {4},
pages = {1405--1415},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2945762},
doi = {10.1109/TCBB.2019.2945762},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GeRDTCGC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GhasemnejadBSB21,
author = {Atefeh Ghasemnejad and
Samira Bazmara and
Mahsa Shadmani and
Kamran Pooshang Bagheri},
title = {Designing a New Multi-Epitope Pertussis Vaccine with Highly Population
Coverage Based on a Novel Sequence and Structural Filtration Algorithm},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {5},
pages = {1885--1892},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2958803},
doi = {10.1109/TCBB.2019.2958803},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GhasemnejadBSB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GondeauAHPM21,
author = {Alexandre Gondeau and
Zahia Aouabed and
Mohamed Hijri and
Pedro R. Peres{-}Neto and
Vladimir Makarenkov},
title = {Object Weighting: {A} New Clustering Approach to Deal with Outliers
and Cluster Overlap in Computational Biology},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {2},
pages = {633--643},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2921577},
doi = {10.1109/TCBB.2019.2921577},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GondeauAHPM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GonzalezGM21,
author = {Miguel Gonz{\'{a}}lez and
Cristina Guti{\'{e}}rrez and
Rodrigo Mart{\'{\i}}nez},
title = {Bayesian Inference in Y-Linked Two-Sex Branching Processes with Mutations:
{ABC} Approach},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {2},
pages = {525--538},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2921308},
doi = {10.1109/TCBB.2019.2921308},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GonzalezGM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GoreckiET21,
author = {Pawel G{\'{o}}recki and
Oliver Eulenstein and
Jerzy Tiuryn},
title = {The Unconstrained Diameters of the Duplication-Loss Cost and the Loss
Cost},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2125--2135},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2919617},
doi = {10.1109/TCBB.2019.2919617},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GoreckiET21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GrabskiGT21,
author = {Hovakim Grabski and
Siranuysh Ginosyan and
Susanna Tiratsuyan},
title = {Molecular Simulations and Markov State Modeling Reveal Inactive Form
of Quorum Sensing Regulator SdiA of Escherichia Coli},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2835--2840},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2021.3074567},
doi = {10.1109/TCBB.2021.3074567},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GrabskiGT21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GrueterDRL21,
author = {Melissa Grueter and
Kalani Duran and
Ramya Ramalingam and
Ran Libeskind{-}Hadas},
title = {Reconciliation Reconsidered: In Search of a Most Representative Reconciliation
in the Duplication-Transfer-Loss Model},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2136--2143},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2942015},
doi = {10.1109/TCBB.2019.2942015},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GrueterDRL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GuCJXWJL21,
author = {Xiaotong Gu and
Zehong Cao and
Alireza Jolfaei and
Peng Xu and
Dongrui Wu and
Tzyy{-}Ping Jung and
Chin{-}Teng Lin},
title = {EEG-Based Brain-Computer Interfaces (BCIs): {A} Survey of Recent Studies
on Signal Sensing Technologies and Computational Intelligence Approaches
and Their Applications},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {5},
pages = {1645--1666},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2021.3052811},
doi = {10.1109/TCBB.2021.3052811},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GuCJXWJL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GuZN21,
author = {Xiaoqing Gu and
Cong Zhang and
Tongguang Ni},
title = {A Hierarchical Discriminative Sparse Representation Classifier for
{EEG} Signal Detection},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {5},
pages = {1679--1687},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.3006699},
doi = {10.1109/TCBB.2020.3006699},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GuZN21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GuZXH21,
author = {Wanrong Gu and
Ziye Zhang and
Xianfen Xie and
Yichen He},
title = {An Improved Muti-Task Learning Algorithm for Analyzing Cancer Survival
Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {2},
pages = {500--511},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2920770},
doi = {10.1109/TCBB.2019.2920770},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GuZXH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GuanLYZ21,
author = {Jiaqi Guan and
Runzhe Li and
Sheng Yu and
Xuegong Zhang},
title = {A Method for Generating Synthetic Electronic Medical Record Text},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {1},
pages = {173--182},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2948985},
doi = {10.1109/TCBB.2019.2948985},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GuanLYZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Guevara-SouzaVE21,
author = {Mauricio Guevara{-}Souza and
Edgar E. Vallejo and
Karol Estrada},
title = {Detecting Clustered Independent Rare Variant Associations Using Genetic
Algorithms},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {3},
pages = {932--939},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2930505},
doi = {10.1109/TCBB.2019.2930505},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Guevara-SouzaVE21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GuoCYCCC21,
author = {Guimu Guo and
Hongzhi Chen and
Da Yan and
James Cheng and
Jake Y. Chen and
Zechen Chong},
title = {Scalable De Novo Genome Assembly Using a Pregel-Like Graph-Parallel
System},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {2},
pages = {731--744},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2920912},
doi = {10.1109/TCBB.2019.2920912},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GuoCYCCC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GuoFGLWL21,
author = {Hongzhe Guo and
Yilei Fu and
Yan Gao and
Junyi Li and
Yadong Wang and
Bo Liu},
title = {deGSM: Memory Scalable Construction Of Large Scale de Bruijn Graph},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2157--2166},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2913932},
doi = {10.1109/TCBB.2019.2913932},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GuoFGLWL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HartmannBM21,
author = {Tom Hartmann and
Max Bannach and
Martin Middendorf},
title = {Sorting Signed Permutations by Inverse Tandem Duplication Random Losses},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2177--2188},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2917198},
doi = {10.1109/TCBB.2019.2917198},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HartmannBM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HossainKMU21,
author = {Md Ekramul Hossain and
Arif Khan and
Mohammad Ali Moni and
Shahadat Uddin},
title = {Use of Electronic Health Data for Disease Prediction: {A} Comprehensive
Literature Review},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {2},
pages = {745--758},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2937862},
doi = {10.1109/TCBB.2019.2937862},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HossainKMU21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HuLGS21,
author = {Yue Hu and
Jin{-}Xing Liu and
Ying{-}Lian Gao and
Junliang Shang},
title = {{DSTPCA:} Double-Sparse Constrained Tensor Principal Component Analysis
Method for Feature Selection},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {4},
pages = {1481--1491},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2943459},
doi = {10.1109/TCBB.2019.2943459},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HuLGS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HuXSCWL21,
author = {ShanShan Hu and
DeNan Xia and
Benyue Su and
Peng Chen and
Bing Wang and
Jin{-}Yan Li},
title = {A Convolutional Neural Network System to Discriminate Drug-Target
Interactions},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {4},
pages = {1315--1324},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2940187},
doi = {10.1109/TCBB.2019.2940187},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HuXSCWL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HuangBG21,
author = {De{-}Shuang Huang and
Vitoantonio Bevilacqua and
M. Michael Gromiha},
title = {Guest Editorial for Special Section on the 15\({}^{\mbox{th}}\) International
Conference on Intelligent Computing {(ICIC)}},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {5},
pages = {1730--1732},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2021.3065722},
doi = {10.1109/TCBB.2021.3065722},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HuangBG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HuangL21,
author = {Hai{-}Hui Huang and
Yong Liang},
title = {A Novel Cox Proportional Hazards Model for High-Dimensional Genomic
Data in Cancer Prognosis},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {5},
pages = {1821--1830},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2961667},
doi = {10.1109/TCBB.2019.2961667},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HuangL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HuangLXZWLZHNPC21,
author = {Chenxi Huang and
Yisha Lan and
Gaowei Xu and
Xiaojun Zhai and
Jipeng Wu and
Fan Lin and
Nianyin Zeng and
Qingqi Hong and
E. Y. K. Ng and
Yonghong Peng and
Fei Chen and
Guokai Zhang},
title = {A Deep Segmentation Network of Multi-Scale Feature Fusion Based on
Attention Mechanism for {IVOCT} Lumen Contour},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {1},
pages = {62--69},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2973971},
doi = {10.1109/TCBB.2020.2973971},
timestamp = {Fri, 02 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/HuangLXZWLZHNPC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HuangWC21,
author = {Ling Huang and
Chang{-}Dong Wang and
Hongyang Chao},
title = {oComm: Overlapping Community Detection in Multi-View Brain Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {4},
pages = {1582--1595},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2939525},
doi = {10.1109/TCBB.2019.2939525},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HuangWC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HuangXX21,
author = {Chenxi Huang and
Yutian Xiao and
Gaowei Xu},
title = {Predicting Human Intention-Behavior Through {EEG} Signal Analysis
Using Multi-Scale {CNN}},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {5},
pages = {1722--1729},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.3039834},
doi = {10.1109/TCBB.2020.3039834},
timestamp = {Fri, 02 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/HuangXX21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HuoCGV21,
author = {Hongwei Huo and
Xiaoyang Chen and
Xu Guo and
Jeffrey Scott Vitter},
title = {Efficient Compression and Indexing for Highly Repetitive {DNA} Sequence
Collections},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2394--2408},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2968323},
doi = {10.1109/TCBB.2020.2968323},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HuoCGV21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/IqbalH21,
author = {Shahid Iqbal and
Zahid Halim},
title = {Orienting Conflicted Graph Edges Using Genetic Algorithms to Discover
Pathways in Protein-Protein Interaction Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {5},
pages = {1970--1985},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2966703},
doi = {10.1109/TCBB.2020.2966703},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/IqbalH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/IslamIN21,
author = {Md. Rafiqul Islam and
Md. Shahidul Islam and
Nazmus Shaker Nafi},
title = {{RNA} Secondary Structure Prediction with Pseudoknots Using Chemical
Reaction Optimization Algorithm},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {3},
pages = {1195--1207},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2936570},
doi = {10.1109/TCBB.2019.2936570},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/IslamIN21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/IslamRZYXR21,
author = {Tunazzina Islam and
Desh Ranjan and
Mohammad Zubair and
Eleanor Young and
Ming Xiao and
Harold Riethman},
title = {Analysis of Subtelomeric {REXTAL} Assemblies Using {QUAST}},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {1},
pages = {365--372},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2913845},
doi = {10.1109/TCBB.2019.2913845},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/IslamRZYXR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JavadiKNE21,
author = {Afsaneh Javadi and
Faezeh Keighobadi and
Vahab Nekoukar and
Marzieh Ebrahimi},
title = {Finite-Set Model Predictive Control of Melanoma Cancer Treatment Using
Signaling Pathway Inhibitor of Cancer Stem Cell},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {4},
pages = {1504--1511},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2940658},
doi = {10.1109/TCBB.2019.2940658},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JavadiKNE21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JiWHWZSFLL21,
author = {Xiangmin Ji and
Lei Wang and
Liyan Hua and
Xueying Wang and
Pengyue Zhang and
Aditi Shendre and
Weixing Feng and
Jin Li and
Lang Li},
title = {Improved Adverse Drug Event Prediction Through Information Component
Guided Pharmacological Network Model {(IC-PNM)}},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {3},
pages = {1113--1121},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2928305},
doi = {10.1109/TCBB.2019.2928305},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JiWHWZSFLL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JiY21,
author = {Junzhong Ji and
Yao Yao},
title = {Convolutional Neural Network With Graphical Lasso to Extract Sparse
Topological Features for Brain Disease Classification},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2327--2338},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2989315},
doi = {10.1109/TCBB.2020.2989315},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JiY21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JiaZFLS21,
author = {Cangzhi Jia and
Meng Zhang and
Cunshuo Fan and
Fuyi Li and
Jiangning Song},
title = {Formator: Predicting Lysine Formylation Sites Based on the Most Distant
Undersampling and Safe-Level Synthetic Minority Oversampling},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {5},
pages = {1937--1945},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2957758},
doi = {10.1109/TCBB.2019.2957758},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JiaZFLS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JiangGWHXQL21,
author = {Yizhang Jiang and
Xiaoqing Gu and
Dongrui Wu and
Wenlong Hang and
Jing Xue and
Shi Qiu and
Chin{-}Teng Lin},
title = {A Novel Negative-Transfer-Resistant Fuzzy Clustering Model With a
Shared Cross-Domain Transfer Latent Space and its Application to Brain
{CT} Image Segmentation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {1},
pages = {40--52},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2963873},
doi = {10.1109/TCBB.2019.2963873},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JiangGWHXQL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JiangLKYCSZLW21,
author = {Xiran Jiang and
Jiaxin Li and
Yangyang Kan and
Tao Yu and
Shijie Chang and
Xianzheng Sha and
Hairong Zheng and
Yahong Luo and
Shanshan Wang},
title = {{MRI} Based Radiomics Approach With Deep Learning for Prediction of
Vessel Invasion in Early-Stage Cervical Cancer},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {3},
pages = {995--1002},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2963867},
doi = {10.1109/TCBB.2019.2963867},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JiangLKYCSZLW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JiangZZQLCJ21,
author = {Tianwen Jiang and
Qingkai Zeng and
Tong Zhao and
Bing Qin and
Ting Liu and
Nitesh V. Chawla and
Meng Jiang},
title = {Biomedical Knowledge Graphs Construction From Conditional Statements},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {3},
pages = {823--835},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2979959},
doi = {10.1109/TCBB.2020.2979959},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JiangZZQLCJ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JiaoSSS21,
author = {Hongmei Jiao and
Qikun Shen and
Yan Shi and
Peng Shi},
title = {Adaptive Tracking Control for Uncertain Cancer-Tumor-Immune Systems},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2753--2758},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.3036069},
doi = {10.1109/TCBB.2020.3036069},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JiaoSSS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JinQGY21,
author = {Yong Jin and
Zhenjiang Qian and
Shengrong Gong and
Weiyong Yang},
title = {Learning Transferable Driven and Drone Assisted Sustainable and Robust
Regional Disease Surveillance for Smart Healthcare},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {1},
pages = {114--125},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.3017041},
doi = {10.1109/TCBB.2020.3017041},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JinQGY21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JingZCZ21,
author = {Fang Jing and
Shao{-}Wu Zhang and
Zhen Cao and
Shihua Zhang},
title = {An Integrative Framework for Combining Sequence and Epigenomic Data
to Predict Transcription Factor Binding Sites Using Deep Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {1},
pages = {355--364},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2901789},
doi = {10.1109/TCBB.2019.2901789},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JingZCZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JokinenGKP21,
author = {Elmeri M. Jokinen and
Krishnasamy Gopinath and
Sami T. Kurkinen and
Olli T. Pentik{\"{a}}inen},
title = {Detection of Binding Sites on SARS-CoV-2 Spike Protein Receptor-Binding
Domain by Molecular Dynamics Simulations in Mixed Solvents},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {4},
pages = {1281--1289},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2021.3076259},
doi = {10.1109/TCBB.2021.3076259},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JokinenGKP21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KamruzzamanKKHS21,
author = {Methun Kamruzzaman and
Ananth Kalyanaraman and
Bala Krishnamoorthy and
Stefan Hey and
Patrick S. Schnable},
title = {Hyppo-X: {A} Scalable Exploratory Framework for Analyzing Complex
Phenomics Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {4},
pages = {1535--1548},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2947500},
doi = {10.1109/TCBB.2019.2947500},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KamruzzamanKKHS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KarbalaygharehQ21,
author = {Alireza Karbalayghareh and
Xiaoning Qian and
Edward R. Dougherty},
title = {Optimal Bayesian Transfer Learning for Count Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {2},
pages = {644--655},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2920981},
doi = {10.1109/TCBB.2019.2920981},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KarbalaygharehQ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KaushikMSDPW21,
author = {Aman Chandra Kaushik and
Aamir Mehmood and
Gurudeeban Selvaraj and
Xiaofeng Dai and
Yi Pan and
Dong{-}Qing Wei},
title = {CoronaPep: An Anti-Coronavirus Peptide Generation Tool},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {4},
pages = {1299--1304},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2021.3064630},
doi = {10.1109/TCBB.2021.3064630},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KaushikMSDPW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KeHLJ21,
author = {Yu{-}Hao Ke and
Jen{-}Wei Huang and
Wei{-}Chen Lin and
Bijay Prasad Jaysawal},
title = {Finding Possible Promoter Binding Sites in {DNA} Sequences by Sequential
Patterns Mining With Specific Numbers of Gaps},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2459--2470},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2980234},
doi = {10.1109/TCBB.2020.2980234},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KeHLJ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KimmelBM21,
author = {Jacob C. Kimmel and
Andrew S. Brack and
Wallace F. Marshall},
title = {Deep Convolutional and Recurrent Neural Networks for Cell Motility
Discrimination and Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {2},
pages = {562--574},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2919307},
doi = {10.1109/TCBB.2019.2919307},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KimmelBM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Kitrungrotsakul21,
author = {Titinunt Kitrungrotsakul and
Xian{-}Hua Han and
Yutaro Iwamoto and
Satoko Takemoto and
Hideo Yokota and
Sari Ipponjima and
Tomomi Nemoto and
Wei Xiong and
Yen{-}Wei Chen},
title = {A Cascade of 2.5D {CNN} and Bidirectional {CLSTM} Network for Mitotic
Cell Detection in 4D Microscopy Image},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {2},
pages = {396--404},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2919015},
doi = {10.1109/TCBB.2019.2919015},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Kitrungrotsakul21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KumarKPPLGP21,
author = {Gautam Kumar and
Rajnish Kumar and
Manoj Kumar Pal and
Nilotpal Pramanik and
Tapobrata Lahiri and
Ankita Gupta and
Saket Pandey},
title = {{APT:} An Automated Probe Tracker From Gene Expression Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {5},
pages = {1864--1874},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2958345},
doi = {10.1109/TCBB.2019.2958345},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KumarKPPLGP21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KumariAS21,
author = {Chetna Kumari and
Muhammad Abulaish and
Naidu Subbarao},
title = {Exploring Molecular Descriptors and Fingerprints to Predict mTOR Kinase
Inhibitors using Machine Learning Techniques},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {5},
pages = {1902--1913},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2964203},
doi = {10.1109/TCBB.2020.2964203},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KumariAS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LeN21,
author = {Nguyen{-}Quoc{-}Khanh Le and
Binh P. Nguyen},
title = {Prediction of {FMN} Binding Sites in Electron Transport Chains Based
on 2-D {CNN} and {PSSM} Profiles},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2189--2197},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2932416},
doi = {10.1109/TCBB.2019.2932416},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LeN21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LeSMZRW21,
author = {Thien Le and
Aaron Sy and
Erin K. Molloy and
Qiuyi Zhang and
Satish Rao and
Tandy J. Warnow},
title = {Using Constrained-INC for Large-Scale Gene Tree and Species Tree Estimation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {1},
pages = {2--15},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2990867},
doi = {10.1109/TCBB.2020.2990867},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LeSMZRW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LeeLNK21,
author = {Sangseon Lee and
Taeheon Lee and
Yung{-}Kyun Noh and
Sun Kim},
title = {Ranked k-Spectrum Kernel for Comparative and Evolutionary Comparison
of Exons, Introns, and CpG Islands},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {3},
pages = {1174--1183},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2938949},
doi = {10.1109/TCBB.2019.2938949},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LeeLNK21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LeeZLLK21,
author = {Chia{-}Yen Lee and
Jun{-}Hua Zeng and
Sheng{-}Yu Lee and
Ru{-}Band Lu and
Po{-}Hsiu Kuo},
title = {{SNP} Data Science for Classification of Bipolar Disorder {I} and
Bipolar Disorder {II}},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2862--2869},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2988024},
doi = {10.1109/TCBB.2020.2988024},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LeeZLLK21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiC21,
author = {Limin Li and
Menglan Cai},
title = {Cross-species Data Classification by Domain Adaptation via Discriminative
Heterogeneous Maximum Mean Discrepancy},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {1},
pages = {312--324},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2914103},
doi = {10.1109/TCBB.2019.2914103},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiPHAH21,
author = {Dong Li and
Zhisong Pan and
Guyu Hu and
Graham Anderson and
Shan He},
title = {Active Module Identification From Multilayer Weighted Gene Co-Expression
Networks: {A} Continuous Optimization Approach},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2239--2248},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2970400},
doi = {10.1109/TCBB.2020.2970400},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiPHAH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiWLZLZBSWLSX21,
author = {Menglu Li and
Yanan Wang and
Fuyi Li and
Yun Zhao and
Mengya Liu and
Sijia Zhang and
Yannan Bin and
Alexander Ian Smith and
Geoffrey I. Webb and
Jian Li and
Jiangning Song and
Junfeng Xia},
title = {A Deep Learning-Based Method for Identification of Bacteriophage-Host
Interaction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {5},
pages = {1801--1810},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.3017386},
doi = {10.1109/TCBB.2020.3017386},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiWLZLZBSWLSX21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiWWZGCG21,
author = {Bing Nan Li and
Xinle Wang and
Rong Wang and
Teng Zhou and
Rongke Gao and
Edward J. Ciaccio and
Peter H. R. Green},
title = {Celiac Disease Detection From Videocapsule Endoscopy Images Using
Strip Principal Component Analysis},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {4},
pages = {1396--1404},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2953701},
doi = {10.1109/TCBB.2019.2953701},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiWWZGCG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiWZSLWW21,
author = {Min Li and
Yake Wang and
Ruiqing Zheng and
Xinghua Shi and
Yaohang Li and
Fang{-}Xiang Wu and
Jianxin Wang},
title = {DeepDSC: {A} Deep Learning Method to Predict Drug Sensitivity of Cancer
Cell Lines},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {2},
pages = {575--582},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2919581},
doi = {10.1109/TCBB.2019.2919581},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiWZSLWW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiWZTCWPW21,
author = {Hao Li and
Yuqi Wang and
Zhen Zhang and
Yihong Tan and
Zhiping Chen and
Xiangyi Wang and
Tingrui Pei and
Lei Wang},
title = {Identifying Microbe-Disease Association Based on a Novel Back-Propagation
Neural Network Model},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2502--2513},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2986459},
doi = {10.1109/TCBB.2020.2986459},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiWZTCWPW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiXLZMPXZW21,
author = {Cheng Li and
Jingxu Xu and
Qiegen Liu and
Yongjin Zhou and
Lisha Mou and
Zuhui Pu and
Yong Xia and
Hairong Zheng and
Shanshan Wang},
title = {Multi-View Mammographic Density Classification by Dilated and Attention-Guided
Residual Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {3},
pages = {1003--1013},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2970713},
doi = {10.1109/TCBB.2020.2970713},
timestamp = {Thu, 06 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiXLZMPXZW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiXWLWL21,
author = {Xingyi Li and
Ju Xiang and
Jianxin Wang and
Jinyan Li and
Fang{-}Xiang Wu and
Min Li},
title = {FUNMarker: Fusion Network-Based Method to Identify Prognostic and
Heterogeneous Breast Cancer Biomarkers},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2483--2491},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2973148},
doi = {10.1109/TCBB.2020.2973148},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiXWLWL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiZW21,
author = {Xiangtao Li and
Shixiong Zhang and
Ka{-}Chun Wong},
title = {Evolving Transcriptomic Profiles From Single-Cell RNA-Seq Data Using
Nature-Inspired Multiobjective Optimization},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2445--2458},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2971993},
doi = {10.1109/TCBB.2020.2971993},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiZW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiZXYFLW21,
author = {Jiechen Li and
Haochen Zhao and
Zhanwei Xuan and
Jingwen Yu and
Xiang Feng and
Bo Liao and
Lei Wang},
title = {A Novel Approach for Potential Human LncRNA-Disease Association Prediction
Based on Local Random Walk},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {3},
pages = {1049--1059},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2934958},
doi = {10.1109/TCBB.2019.2934958},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiZXYFLW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LianLLXLL21,
author = {Sheng Lian and
Lei Li and
Guiren Lian and
Xiao Xiao and
Zhiming Luo and
Shaozi Li},
title = {A Global and Local Enhanced Residual U-Net for Accurate Retinal Vessel
Segmentation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {3},
pages = {852--862},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2917188},
doi = {10.1109/TCBB.2019.2917188},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LianLLXLL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiangLCC21,
author = {Shaoheng Liang and
Qingnan Liang and
Rui Chen and
Ken Chen},
title = {Stratified Test Accurately Identifies Differentially Expressed Genes
Under Batch Effects in Single-Cell Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2072--2079},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2021.3094650},
doi = {10.1109/TCBB.2021.3094650},
timestamp = {Wed, 21 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/LiangLCC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiaoLLZWPLW21,
author = {Xingyu Liao and
Min Li and
Junwei Luo and
You Zou and
Fang{-}Xiang Wu and
Yi Pan and
Feng Luo and
Jianxin Wang},
title = {{EPGA-SC} : {A} Framework for de novo Assembly of Single-Cell Sequencing
Reads},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {4},
pages = {1492--1503},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2945761},
doi = {10.1109/TCBB.2019.2945761},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiaoLLZWPLW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LimX21,
author = {Hansaim Lim and
Lei Xie},
title = {A New Weighted Imputed Neighborhood-Regularized Tri-Factorization
One-Class Collaborative Filtering Algorithm: Application to Target
Gene Prediction of Transcription Factors},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {1},
pages = {126--137},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2968442},
doi = {10.1109/TCBB.2020.2968442},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LimX21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LinDGY21,
author = {Bo Lin and
Shuiguang Deng and
Honghao Gao and
Jianwei Yin},
title = {A Multi-Scale Activity Transition Network for Data Translation in
{EEG} Signals Decoding},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {5},
pages = {1699--1709},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.3024228},
doi = {10.1109/TCBB.2020.3024228},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LinDGY21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LinKHJHH21,
author = {Jiunn{-}Liang Lin and
Wei{-}Liang Kuo and
Yi{-}Hao Huang and
Tai{-}Lang Jong and
Ao{-}Lin Hsu and
Wen{-}Hsing Hsu},
title = {Using Convolutional Neural Networks to Measure the Physiological Age
of Caenorhabditis elegans},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2724--2732},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2971992},
doi = {10.1109/TCBB.2020.2971992},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LinKHJHH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuCH21,
author = {Yan Liu and
Wenfang Chen and
Zengyou He},
title = {Essential Protein Recognition via Community Significance},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2788--2794},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2021.3102018},
doi = {10.1109/TCBB.2021.3102018},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuCH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuLKZZCL21,
author = {Enze Liu and
Jin Li and
Garrett Kinnebrew and
Pengyue Zhang and
Yan Zhang and
Lijun Cheng and
Lang Li},
title = {A Fast and Furious Bayesian Network and Its Application of Identifying
Colon Cancer to Liver Metastasis Gene Regulatory Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {4},
pages = {1325--1335},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2944826},
doi = {10.1109/TCBB.2019.2944826},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuLKZZCL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuLQW21,
author = {Min Liu and
Yalan Liu and
Weili Qian and
Yaonan Wang},
title = {DeepSeed Local Graph Matching for Densely Packed Cells Tracking},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {3},
pages = {1060--1069},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2936851},
doi = {10.1109/TCBB.2019.2936851},
timestamp = {Mon, 17 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuLQW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuWZZXW21,
author = {Shuaiqi Liu and
Xu Wang and
Ling Zhao and
Jie Zhao and
Qi Xin and
Shui{-}Hua Wang},
title = {Subject-Independent Emotion Recognition of {EEG} Signals Based on
Dynamic Empirical Convolutional Neural Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {5},
pages = {1710--1721},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.3018137},
doi = {10.1109/TCBB.2020.3018137},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuWZZXW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuWZZZL21,
author = {Yue Liu and
Shu{-}Lin Wang and
Jun{-}Feng Zhang and
Wei Zhang and
Su Zhou and
Wen Li},
title = {{DMFMDA:} Prediction of Microbe-Disease Associations Based on Deep
Matrix Factorization Using Bayesian Personalized Ranking},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {5},
pages = {1763--1772},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.3018138},
doi = {10.1109/TCBB.2020.3018138},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuWZZZL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuZW21,
author = {Liu Liu and
Reza Zare and
Shuihua Wang},
title = {Guest Editorial: Transfer Learning Methods Used in Medical Imaging
and Health Informatics},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {1},
pages = {38--39},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.3020460},
doi = {10.1109/TCBB.2020.3020460},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuZW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LongLYS21,
author = {Wei Long and
Tiange Li and
Yang Yang and
Hong{-}Bin Shen},
title = {FlyIT: Drosophila Embryogenesis Image Annotation based on Image Tiling
and Convolutional Neural Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {1},
pages = {194--204},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2935723},
doi = {10.1109/TCBB.2019.2935723},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LongLYS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Lopez-LoperaDA21,
author = {Andr{\'{e}}s F. L{\'{o}}pez{-}Lopera and
Nicolas Durrande and
Mauricio A. {\'{A}}lvarez},
title = {Physically-Inspired Gaussian Process Models for Post-Transcriptional
Regulation in Drosophila},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {2},
pages = {656--666},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2918774},
doi = {10.1109/TCBB.2019.2918774},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Lopez-LoperaDA21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LuGYW21,
author = {Huijuan Lu and
Huiyun Gao and
Minchao Ye and
Xiuhui Wang},
title = {A Hybrid Ensemble Algorithm Combining AdaBoost and Genetic Algorithm
for Cancer Classification with Gene Expression Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {3},
pages = {863--870},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2952102},
doi = {10.1109/TCBB.2019.2952102},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LuGYW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LuLYZO21,
author = {Fan Lu and
Yilong Lin and
Chongbin Yuan and
Xiao{-}Fei Zhang and
Le Ou{-}Yang},
title = {EnTSSR: {A} Weighted Ensemble Learning Method to Impute Single-Cell
{RNA} Sequencing Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2781--2787},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2021.3110850},
doi = {10.1109/TCBB.2021.3110850},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LuLYZO21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LuWDLGH21,
author = {Xinguo Lu and
Xinyu Wang and
Li Ding and
Jinxin Li and
Yan Gao and
Keren He},
title = {frDriver: {A} Functional Region Driver Identification for Protein
Sequence},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {5},
pages = {1773--1783},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.3020096},
doi = {10.1109/TCBB.2020.3020096},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LuWDLGH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LuncasuR21,
author = {Victor Luncasu and
Madalina Raschip},
title = {A Graph-Based Approach for the {DNA} Word Design Problem},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2747--2752},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.3008346},
doi = {10.1109/TCBB.2020.3008346},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LuncasuR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LuoSLCD21,
author = {Jiawei Luo and
Cong Shen and
Zihan Lai and
Jie Cai and
Pingjian Ding},
title = {Incorporating Clinical, Chemical and Biological Information for Predicting
Small Molecule-microRNA Associations Based on Non-Negative Matrix
Factorization},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2535--2545},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2975780},
doi = {10.1109/TCBB.2020.2975780},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LuoSLCD21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LuoWYLWP21,
author = {Huimin Luo and
Jianxin Wang and
Cheng Yan and
Min Li and
Fang{-}Xiang Wu and
Yi Pan},
title = {A Novel Drug Repositioning Approach Based on Collaborative Metric
Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {2},
pages = {463--471},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2926453},
doi = {10.1109/TCBB.2019.2926453},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LuoWYLWP21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LvQWP21,
author = {Zhihan Lv and
Liang Qiao and
Qingjun Wang and
Francesco Piccialli},
title = {Advanced Machine-Learning Methods for Brain-Computer Interfacing},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {5},
pages = {1688--1698},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.3010014},
doi = {10.1109/TCBB.2020.3010014},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LvQWP21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LvTX21,
author = {Jin{-}Xiong Lv and
Shikui Tu and
Lei Xu},
title = {Detection of Phenotype-Related Mutations of {COVID-19} via the Whole
Genomic Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {4},
pages = {1242--1249},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2021.3049836},
doi = {10.1109/TCBB.2021.3049836},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LvTX21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LyneP21,
author = {Anne{-}Marie Lyne and
Le{\"{\i}}la Peri{\'{e}}},
title = {Comparing Phylogenetic Approaches to Reconstructing Cell Lineage From
Microsatellites With Missing Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2291--2301},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2992813},
doi = {10.1109/TCBB.2020.2992813},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LyneP21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LyuZLHDG21,
author = {Yinuo Lyu and
Zhen Zhang and
Jiawei Li and
Wenying He and
Yijie Ding and
Fei Guo},
title = {iEnhancer-KL: {A} Novel Two-Layer Predictor for Identifying Enhancers
by Position Specific of Nucleotide Composition},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2809--2815},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2021.3053608},
doi = {10.1109/TCBB.2021.3053608},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LyuZLHDG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MaWLLYHG21,
author = {Lijia Ma and
Shiqiang Wang and
Qiuzhen Lin and
Jianqiang Li and
Zhuhong You and
Jiaxiang Huang and
Maoguo Gong},
title = {Multi-Neighborhood Learning for Global Alignment in Biological Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2598--2611},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2985838},
doi = {10.1109/TCBB.2020.2985838},
timestamp = {Wed, 24 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MaWLLYHG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MaharajQOH21,
author = {Sridevi Maharaj and
Taotao Qian and
Zarin Ohiba and
Wayne B. Hayes},
title = {Common Neighbors Extension of the Sticky Model for {PPI} Networks
Evaluated by Global and Local Graphlet Similarity},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {1},
pages = {16--26},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.3017374},
doi = {10.1109/TCBB.2020.3017374},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MaharajQOH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MaheshwariGSWYA21,
author = {Sidharth Maheshwari and
Venkateshwarlu Y. Gudur and
Rishad A. Shafik and
Ian Wilson and
Alex Yakovlev and
Amit Acharyya},
title = {{CORAL:} Verification-Aware OpenCL Based Read Mapper for Heterogeneous
Systems},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {4},
pages = {1426--1438},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2943856},
doi = {10.1109/TCBB.2019.2943856},
timestamp = {Tue, 30 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MaheshwariGSWYA21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MaicasS21,
author = {Sergi Maicas and
Jaume Segura{-}Garcia},
title = {Spatial Distribution of Antibiotic-Producing Bacteria in Urban Areas.
{A} Case Study in Val{\`{e}}ncia (Spain)},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2877--2883},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.3046557},
doi = {10.1109/TCBB.2020.3046557},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MaicasS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MainaliCG21,
author = {Sambriddhi Mainali and
Fredy A. Colorado and
Max H. Garzon},
title = {Foretelling the Phenotype of a Genomic Sequence},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {2},
pages = {777--783},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2985349},
doi = {10.1109/TCBB.2020.2985349},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MainaliCG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MandalSB21,
author = {Koyel Mandal and
Rosy Sarmah and
Dhruba Kumar Bhattacharyya},
title = {POPBic: Pathway-Based Order Preserving Biclustering Algorithm Towards
the Analysis of Gene Expression Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2659--2670},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2980816},
doi = {10.1109/TCBB.2020.2980816},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MandalSB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Martin-VideV21,
author = {Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Algorithms for Computational Biology: Sixth Edition},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {1},
pages = {1},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.3023866},
doi = {10.1109/TCBB.2020.3023866},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Martin-VideV21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Martin-VideV21a,
author = {Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Algorithms for Computational Biology: Seventh Edition},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2059--2060},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2021.3099915},
doi = {10.1109/TCBB.2021.3099915},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Martin-VideV21a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MedhatS21,
author = {Belal Medhat and
Ahmed Shawish},
title = {{FLR:} {A} Revolutionary Alignment-Free Similarity Analysis Methodology
for DNA-Sequences},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {5},
pages = {1924--1936},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2967385},
doi = {10.1109/TCBB.2020.2967385},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MedhatS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MontagnaBR21,
author = {Sara Montagna and
Michele Braccini and
Andrea Roli},
title = {The Impact of Self-Loops on Boolean Networks Attractor Landscape and
Implications for Cell Differentiation Modelling},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2702--2713},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2968310},
doi = {10.1109/TCBB.2020.2968310},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MontagnaBR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MonteiroRA21,
author = {Nelson R. C. Monteiro and
Bernardete Ribeiro and
Joel P. Arrais},
title = {Drug-Target Interaction Prediction: End-to-End Deep Learning Approach},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2364--2374},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2977335},
doi = {10.1109/TCBB.2020.2977335},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MonteiroRA21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MoralesH21,
author = {Veronica Suaste Morales and
Sheridan K. Houghten},
title = {Lossy Compression of Quality Values in Sequencing Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {5},
pages = {1958--1969},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2959273},
doi = {10.1109/TCBB.2019.2959273},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MoralesH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MuW21,
author = {Quanhua Mu and
Jiguang Wang},
title = {{CNAPE:} {A} Machine Learning Method for Copy Number Alteration Prediction
from Gene Expression},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {1},
pages = {306--311},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2944827},
doi = {10.1109/TCBB.2019.2944827},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MuW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MunirGAM21,
author = {Farzeen Munir and
Sadaf Gull and
Amina Asif and
Fayyaz ul Amir Afsar Minhas},
title = {{MILAMP:} Multiple Instance Prediction of Amyloid Proteins},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {3},
pages = {1142--1150},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2936846},
doi = {10.1109/TCBB.2019.2936846},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MunirGAM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/NguyenLQTLTVL21,
author = {Thin Nguyen and
Samuel C. Lee and
Thomas P. Quinn and
Buu Minh Thanh Truong and
Xiaomei Li and
Truyen Tran and
Svetha Venkatesh and
Thuc Duy Le},
title = {{PAN:} Personalized Annotation-Based Networks for the Prediction of
Breast Cancer Relapse},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2841--2847},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2021.3076422},
doi = {10.1109/TCBB.2021.3076422},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/NguyenLQTLTVL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/NielsenOMHZ21,
author = {Sune S. Nielsen and
Marek Ostaszewski and
Fintan McGee and
David Hoksza and
Simone Zorzan},
title = {Machine Learning to Support the Presentation of Complex Pathway Graphs},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {3},
pages = {1130--1141},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2938501},
doi = {10.1109/TCBB.2019.2938501},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/NielsenOMHZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/OcchipintiHKWYA21,
author = {Annalisa Occhipinti and
Youssef Hamadi and
Hillel Kugler and
Christoph M. Wintersteiger and
Boyan Yordanov and
Claudio Angione},
title = {Discovering Essential Multiple Gene Effects Through Large Scale Optimization:
An Application to Human Cancer Metabolism},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2339--2352},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2973386},
doi = {10.1109/TCBB.2020.2973386},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/OcchipintiHKWYA21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/OgundijoZWA21,
author = {Oyetunji E. Ogundijo and
Kaiyi Zhu and
Xiaodong Wang and
Dimitris Anastassiou},
title = {Characterizing Intra-Tumor Heterogeneity From Somatic Mutations Without
Copy-Neutral Assumption},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2271--2280},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2973635},
doi = {10.1109/TCBB.2020.2973635},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/OgundijoZWA21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/OliveiraJFBBDD21,
author = {Andre Rodrigues Oliveira and
G{\'{e}}raldine Jean and
Guillaume Fertin and
Klairton Lima Brito and
Laurent Bulteau and
Ulisses Dias and
Zanoni Dias},
title = {Sorting Signed Permutations by Intergenic Reversals},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2870--2876},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2993002},
doi = {10.1109/TCBB.2020.2993002},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/OliveiraJFBBDD21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/OliveiraJFBDD21,
author = {Andre Rodrigues Oliveira and
G{\'{e}}raldine Jean and
Guillaume Fertin and
Klairton Lima Brito and
Ulisses Dias and
Zanoni Dias},
title = {Sorting Permutations by Intergenic Operations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2080--2093},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2021.3077418},
doi = {10.1109/TCBB.2021.3077418},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/OliveiraJFBDD21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/OzdenSAEMQC21,
author = {Furkan Ozden and
Metin Can Siper and
Necmi Acarsoy and
Tugrulcan Elmas and
Bryan Marty and
Xinjian Qi and
A. Erc{\"{u}}ment {\c{C}}i{\c{c}}ek},
title = {{DORMAN:} Database of Reconstructed MetAbolic Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {4},
pages = {1474--1480},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2944905},
doi = {10.1109/TCBB.2019.2944905},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/OzdenSAEMQC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/OzgulBT21,
author = {Ozan Firat {\"{O}}zg{\"{u}}l and
Batuhan Bardak and
Mehmet Tan},
title = {A Convolutional Deep Clustering Framework for Gene Expression Time
Series},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2198--2207},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2988985},
doi = {10.1109/TCBB.2020.2988985},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/OzgulBT21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PalHDQP21,
author = {Antara Pal and
Pegi Haliti and
Bhushan Dharmadhikari and
Wu Qi and
Prabir Patra},
title = {Manipulating Extracellular Matrix Organizations and Parameters to
Control Local Cancer Invasion},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2566--2576},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2989223},
doi = {10.1109/TCBB.2020.2989223},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PalHDQP21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PalRP21,
author = {Jayanta Kumar Pal and
Shubhra Sankar Ray and
Sankar K. Pal},
title = {Identifying Drug Resistant miRNAs Using Entropy Based Ranking},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {3},
pages = {973--984},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2933205},
doi = {10.1109/TCBB.2019.2933205},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PalRP21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PathakSA21,
author = {Yadunath Pathak and
Piyush Kumar Shukla and
K. V. Arya},
title = {Deep Bidirectional Classification Model for {COVID-19} Disease Infected
Patients},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {4},
pages = {1234--1241},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.3009859},
doi = {10.1109/TCBB.2020.3009859},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PathakSA21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PattabiramanW21,
author = {Srilakshmi Pattabiraman and
Tandy J. Warnow},
title = {Profile Hidden Markov Models Are Not Identifiable},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {1},
pages = {162--172},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2933821},
doi = {10.1109/TCBB.2019.2933821},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PattabiramanW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PenchovskyPK21,
author = {Robert Penchovsky and
Nikolet Pavlova and
Dimitrios Kaloudas},
title = {RSwitch: {A} Novel Bioinformatics Database on Riboswitches as Antibacterial
Drug Targets},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {2},
pages = {804--808},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2983922},
doi = {10.1109/TCBB.2020.2983922},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PenchovskyPK21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PengWYZZL21,
author = {Cheng Peng and
Xinyu Wu and
Wen Yuan and
Xinran Zhang and
Yu Zhang and
Ying Li},
title = {{MGRFE:} Multilayer Recursive Feature Elimination Based on an Embedded
Genetic Algorithm for Cancer Classification},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {2},
pages = {621--632},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2921961},
doi = {10.1109/TCBB.2019.2921961},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PengWYZZL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PengYLLL21,
author = {Shaoliang Peng and
Yaning Yang and
Wei Liu and
Fei Li and
Xiangke Liao},
title = {Discriminant Projection Shared Dictionary Learning for Classification
of Tumors Using Gene Expression Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {4},
pages = {1464--1473},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2950209},
doi = {10.1109/TCBB.2019.2950209},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PengYLLL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PereiraGS21,
author = {Getulio Pereira and
Preetam Ghosh and
Anderson Santos},
title = {A Bridging Centrality Plugin for {GEPHI} and a Case Study for Mycobacterium
Tuberculosis H37Rv},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2741--2746},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2021.3120937},
doi = {10.1109/TCBB.2021.3120937},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PereiraGS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Perez-Rodriguez21,
author = {Javier P{\'{e}}rez{-}Rodr{\'{\i}}guez and
Aida de Haro{-}Garc{\'{\i}}a and
Nicol{\'{a}}s Garc{\'{\i}}a{-}Pedrajas},
title = {Floating Search Methodology for Combining Classification Models for
Site Recognition in {DNA} Sequences},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2471--2482},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2974221},
doi = {10.1109/TCBB.2020.2974221},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Perez-Rodriguez21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PliakosVT21,
author = {Konstantinos Pliakos and
Celine Vens and
Grigorios Tsoumakas},
title = {Predicting Drug-Target Interactions With Multi-Label Classification
and Label Partitioning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {4},
pages = {1596--1607},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2951378},
doi = {10.1109/TCBB.2019.2951378},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PliakosVT21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PognonecGDPB21,
author = {Philippe Pognonec and
Axel Gustovic and
Zied Djabari and
Thierry Pourcher and
Michel Barlaud},
title = {Mitotic Index Determination on Live Cells From Label-Free Acquired
Quantitative Phase Images Using a Supervised Autoencoder},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2828--2834},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2021.3115876},
doi = {10.1109/TCBB.2021.3115876},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PognonecGDPB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PyneA21,
author = {Saptarshi Pyne and
Ashish Anand},
title = {Rapid Reconstruction of Time-varying Gene Regulatory Networks with
Limited Main Memory},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {4},
pages = {1608--1619},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2946826},
doi = {10.1109/TCBB.2019.2946826},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PyneA21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/QianZZ21,
author = {Ying Qian and
Yu Zhang and
Jiongmin Zhang},
title = {Alignment-Free Sequence Comparison With Multiple k Values},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {5},
pages = {1841--1849},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2955081},
doi = {10.1109/TCBB.2019.2955081},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/QianZZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/QianZZLWHBAEFTD21,
author = {Pengjiang Qian and
Jiamin Zheng and
Qiankun Zheng and
Yuan Liu and
Tingyu Wang and
Rose Al Helo and
Atallah Baydoun and
Norbert Avril and
Rodney J. Ellis and
Harry Friel and
Melanie S. Traughber and
Ajit Devaraj and
Bryan J. Traughber and
Raymond F. Muzic Jr.},
title = {Transforming UTE-mDixon {MR} Abdomen-Pelvis Images Into {CT} by Jointly
Leveraging Prior Knowledge and Partial Supervision},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {1},
pages = {70--82},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2979841},
doi = {10.1109/TCBB.2020.2979841},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/QianZZLWHBAEFTD21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/QinDZLSZ21,
author = {Ruiqi Qin and
Lei Duan and
Huiru Zheng and
Jesse Li{-}Ling and
Kaiwen Song and
Yidan Zhang},
title = {An Ontology-Independent Representation Learning for Similar Disease
Detection Based on Multi-Layer Similarity Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {1},
pages = {183--193},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2941475},
doi = {10.1109/TCBB.2019.2941475},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/QinDZLSZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/QiuJC21,
author = {Yushan Qiu and
Hao Jiang and
Wai{-}Ki Ching},
title = {Unsupervised Learning Framework With Multidimensional Scaling in Predicting
Epithelial-Mesenchymal Transitions},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2714--2723},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2992605},
doi = {10.1109/TCBB.2020.2992605},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/QiuJC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/QiuQDXWZPL21,
author = {Jingxuan Qiu and
Tianyi Qiu and
Qingli Dong and
Dongpo Xu and
Xiang Wang and
Qi Zhang and
Jing Pan and
Qing Liu},
title = {Predicting the Antigenic Relationship of Foot-and-Mouth Disease Virus
for Vaccine Selection Through a Computational Model},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {2},
pages = {677--685},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2923396},
doi = {10.1109/TCBB.2019.2923396},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/QiuQDXWZPL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/RaghuGBSDBC21,
author = {Vineet K. Raghu and
Xiaoyu Ge and
Arun Balajiee and
Daniel J. Shirer and
Isha Das and
Panayiotis V. Benos and
Panos K. Chrysanthis},
title = {A Pipeline for Integrated Theory and Data-Driven Modeling of Biomedical
Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {3},
pages = {811--822},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.3019237},
doi = {10.1109/TCBB.2020.3019237},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/RaghuGBSDBC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/RahmanAS21,
author = {Md Anisur Rahman and
Li{-}Minn Ang and
Kah Phooi Seng},
title = {Data Convexity and Parameter Independent Clustering for Biomedical
Datasets},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {2},
pages = {765--772},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2978188},
doi = {10.1109/TCBB.2020.2978188},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/RahmanAS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SadeghiK21,
author = {Seyedeh Shaghayegh Sadeghi and
Mohammad Reza Keyvanpour},
title = {An Analytical Review of Computational Drug Repurposing},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {2},
pages = {472--488},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2933825},
doi = {10.1109/TCBB.2019.2933825},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SadeghiK21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SchlosserKSDPBC21,
author = {Pascal Schlosser and
Jochen Knaus and
Maximilian Schmutz and
Konstanze D{\"{o}}hner and
Christoph Plass and
Lars Bullinger and
Rainer Claus and
Harald Binder and
Michael L{\"{u}}bbert and
Martin Schumacher},
title = {Netboost: Boosting-Supported Network Analysis Improves High-Dimensional
Omics Prediction in Acute Myeloid Leukemia and Huntington's Disease},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2635--2648},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2983010},
doi = {10.1109/TCBB.2020.2983010},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SchlosserKSDPBC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SchultzX21,
author = {Daniel W. Schultz and
Bojian Xu},
title = {Parallel Methods for Finding {\textdollar}k{\textdollar}k-Mismatch
Shortest Unique Substrings Using {GPU}},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {1},
pages = {386--395},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2935061},
doi = {10.1109/TCBB.2019.2935061},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SchultzX21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SchwobZD21,
author = {Michael R. Schwob and
Justin Zhan and
Aeren Dempsey},
title = {Modeling Cell Communication with Time-Dependent Signaling Hypergraphs},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {3},
pages = {1151--1163},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2937033},
doi = {10.1109/TCBB.2019.2937033},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SchwobZD21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SelvarajDPBS21,
author = {Chandrabose Selvaraj and
Dhurvas Chandrasekaran Dinesh and
Umesh Panwar and
Evzen Boura and
Sanjeev Kumar Singh},
title = {High-Throughput Screening and Quantum Mechanics for Identifying Potent
Inhibitors Against Mac1 Domain of SARS-CoV-2 Nsp3},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {4},
pages = {1262--1270},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.3037136},
doi = {10.1109/TCBB.2020.3037136},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SelvarajDPBS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ShangL21,
author = {Haixia Shang and
Zhi{-}Ping Liu},
title = {Prioritizing Type 2 Diabetes Genes by Weighted PageRank on Bilayer
Heterogeneous Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {1},
pages = {336--346},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2917190},
doi = {10.1109/TCBB.2019.2917190},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ShangL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SharmaRB21,
author = {Gaurav Sharma and
Prashant Singh Rana and
Seema Bawa},
title = {Hybrid Machine Learning Models for Predicting Types of Human T-cell
Lymphotropic Virus},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {4},
pages = {1524--1534},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2944610},
doi = {10.1109/TCBB.2019.2944610},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SharmaRB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ShiLZ21,
author = {Kai Shi and
Wei Lin and
Xing{-}Ming Zhao},
title = {Identifying Molecular Biomarkers for Diseases With Machine Learning
Based on Integrative Omics},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2514--2525},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2986387},
doi = {10.1109/TCBB.2020.2986387},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ShiLZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SikolenkoV21,
author = {Maxim A. Sikolenko and
Leonid N. Valentovich},
title = {Barapost: Binning of Nucleotide Sequences According to Taxonomic Annotation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2766--2767},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.3009780},
doi = {10.1109/TCBB.2020.3009780},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SikolenkoV21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SilvaPFF21,
author = {Pablo Nascimento da Silva and
Alexandre Plastino and
Fabio Fabris and
Alex Alves Freitas},
title = {A Novel Feature Selection Method for Uncertain Features: An Application
to the Prediction of Pro-/Anti-Longevity Genes},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2230--2238},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2988450},
doi = {10.1109/TCBB.2020.2988450},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SilvaPFF21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SinghAKSPS21,
author = {Rishav Singh and
Tanveer Ahmed and
Abhinav Kumar and
Amit Kumar Singh and
Anil Kumar Pandey and
Sanjay Kumar Singh},
title = {Imbalanced Breast Cancer Classification Using Transfer Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {1},
pages = {83--93},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2980831},
doi = {10.1109/TCBB.2020.2980831},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SinghAKSPS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SinghP21,
author = {Pratik Singh and
Gayadhar Pradhan},
title = {A New {ECG} Denoising Framework Using Generative Adversarial Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {2},
pages = {759--764},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2976981},
doi = {10.1109/TCBB.2020.2976981},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SinghP21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SiqueiraBDD21,
author = {Gabriel Siqueira and
Klairton Lima Brito and
Ulisses Dias and
Zanoni Dias},
title = {Heuristics for Genome Rearrangement Distance With Replicated Genes},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2094--2108},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2021.3095021},
doi = {10.1109/TCBB.2021.3095021},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SiqueiraBDD21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SongWSA21,
author = {Xiaona Song and
Mi Wang and
Shuai Song and
Choon Ki Ahn},
title = {Sampled-Data State Estimation of Reaction Diffusion Genetic Regulatory
Networks via Space-Dividing Approaches},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {2},
pages = {718--730},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2919532},
doi = {10.1109/TCBB.2019.2919532},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SongWSA21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SongZLZZHCWZCSZ21,
author = {Ying Song and
Shuangjia Zheng and
Liang Li and
Xiang Zhang and
Xiaodong Zhang and
Ziwang Huang and
Jianwen Chen and
Ruixuan Wang and
Huiying Zhao and
Yutian Chong and
Jun Shen and
Yunfei Zha and
Yuedong Yang},
title = {Deep Learning Enables Accurate Diagnosis of Novel Coronavirus {(COVID-19)}
With {CT} Images},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2775--2780},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2021.3065361},
doi = {10.1109/TCBB.2021.3065361},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SongZLZZHCWZCSZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Spirko-BurnsD21,
author = {Lauren Spirko{-}Burns and
Karthik Devarajan},
title = {Supervised Dimension Reduction for Large-Scale "Omics" Data With Censored
Survival Outcomes Under Possible Non-Proportional Hazards},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {5},
pages = {2032--2044},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2965934},
doi = {10.1109/TCBB.2020.2965934},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Spirko-BurnsD21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SreedharanTS21,
author = {Jithin K. Sreedharan and
Krzysztof Turowski and
Wojciech Szpankowski},
title = {Revisiting Parameter Estimation in Biological Networks: Influence
of Symmetries},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {3},
pages = {836--849},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2980260},
doi = {10.1109/TCBB.2020.2980260},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SreedharanTS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SteinauerZGZ21,
author = {Nickolas Steinauer and
Kevin Zhang and
Chun Guo and
Jinsong Zhang},
title = {Computational Modeling of Gene-Specific Transcriptional Repression,
Activation and Chromatin Interactions in Leukemogenesis by LASSO-Regularized
Logistic Regression},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2109--2122},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2021.3078128},
doi = {10.1109/TCBB.2021.3078128},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SteinauerZGZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SuPP21,
author = {Cui Su and
Jun Pang and
Soumya Paul},
title = {Towards Optimal Decomposition of Boolean Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2167--2176},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2914051},
doi = {10.1109/TCBB.2019.2914051},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SuPP21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SunOD21,
author = {Yesen Sun and
Le Ou{-}Yang and
Dao{-}Qing Dai},
title = {{WMLRR:} {A} Weighted Multi-View Low Rank Representation to Identify
Cancer Subtypes From Multiple Types of Omics Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2891--2897},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2021.3063284},
doi = {10.1109/TCBB.2021.3063284},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SunOD21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/TabaszewskiGMAE21,
author = {Pawel Tabaszewski and
Pawel G{\'{o}}recki and
Alexey Markin and
Tavis K. Anderson and
Oliver Eulenstein},
title = {Consensus of All Solutions for Intractable Phylogenetic Tree Inference},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {1},
pages = {149--161},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2947051},
doi = {10.1109/TCBB.2019.2947051},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/TabaszewskiGMAE21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/TaouL21,
author = {Nadia S. Taou and
Michael A. Lones},
title = {Optimising Boolean Synthetic Regulatory Networks to Control Cell States},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2649--2658},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2973636},
doi = {10.1109/TCBB.2020.2973636},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/TaouL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/TayaraC21,
author = {Hilal Tayara and
Kil To Chong},
title = {Improved Predicting of The Sequence Specificities of {RNA} Binding
Proteins by Deep Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2526--2534},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2981335},
doi = {10.1109/TCBB.2020.2981335},
timestamp = {Sun, 24 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/TayaraC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/VilallongaRARC21,
author = {Gabriel Vilallonga and
Daniel Riesco and
Ant{\^{o}}nio{-}Carlos Guimar{\~{a}}es de Almeida and
Ant{\^{o}}nio M{\'{a}}rcio Rodrigues and
S{\'{e}}rgio Vale Aguiar Campos},
title = {In Silico Laboratory Experiments Using Statistical Model Checking:
{A} New Model of the Palytoxin-Induced Pump Channel as Case Study},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2816--2822},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.3028776},
doi = {10.1109/TCBB.2020.3028776},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/VilallongaRARC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Villegas-Morcillo21,
author = {Amelia Villegas{-}Morcillo and
Angel M. Gomez and
Juan Andres Morales{-}Cordovilla and
Victoria E. S{\'{a}}nchez},
title = {Protein Fold Recognition From Sequences Using Convolutional and Recurrent
Neural Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2848--2854},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.3012732},
doi = {10.1109/TCBB.2020.3012732},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Villegas-Morcillo21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangDTDG21,
author = {Yubo Wang and
Yijie Ding and
Jijun Tang and
Yu Dai and
Fei Guo},
title = {CrystalM: {A} Multi-View Fusion Approach for Protein Crystallization
Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {1},
pages = {325--335},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2912173},
doi = {10.1109/TCBB.2019.2912173},
timestamp = {Wed, 04 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangDTDG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangFY21,
author = {Xiuhui Wang and
Shiling Feng and
Wei Qi Yan},
title = {Human Gait Recognition Based on Self-Adaptive Hidden Markov Model},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {3},
pages = {963--972},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2951146},
doi = {10.1109/TCBB.2019.2951146},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangFY21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangGLFLWZ21,
author = {Chao Wang and
Lei Gong and
Shiming Lei and
Haijie Fang and
Xi Li and
Aili Wang and
Xuehai Zhou},
title = {GenSeq+: {A} Scalable High-Performance Accelerator for Genome Sequencing},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {4},
pages = {1512--1523},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2947059},
doi = {10.1109/TCBB.2019.2947059},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangGLFLWZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangHW21,
author = {Zilu Wang and
Qinghui Hong and
Xiaoping Wang},
title = {A Memristive Circuit Implementation of Eyes State Detection in Fatigue
Driving Based on Biological Long Short-Term Memory Rule},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2218--2229},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2974944},
doi = {10.1109/TCBB.2020.2974944},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangHW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangLW21,
author = {Shiming Wang and
Jie Li and
Yadong Wang},
title = {{WMMDCA:} Prediction of Drug Responses by Weight-Based Modular Mapping
in Cancer Cell Lines},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2733--2740},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2976997},
doi = {10.1109/TCBB.2020.2976997},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangLW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangMWL21,
author = {Yunhe Wang and
Zhiqiang Ma and
Ka{-}Chun Wong and
Xiangtao Li},
title = {Evolving Multiobjective Cancer Subtype Diagnosis From Cancer Gene
Expression Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2431--2444},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2974953},
doi = {10.1109/TCBB.2020.2974953},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangMWL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangMWZCZWZCX21,
author = {Bing Wang and
Changqing Mei and
Yuanyuan Wang and
Yuming Zhou and
Mu{-}Tian Cheng and
Chunhou Zheng and
Lei Wang and
Jun Zhang and
Peng Chen and
Yan Xiong},
title = {Imbalance Data Processing Strategy for Protein Interaction Sites Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {3},
pages = {985--994},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2953908},
doi = {10.1109/TCBB.2019.2953908},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangMWZCZWZCX21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangS21,
author = {Biing{-}Feng Wang and
Krister M. Swenson},
title = {A Faster Algorithm for Computing the Kernel of Maximum Agreement Subtrees},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {2},
pages = {416--430},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2922955},
doi = {10.1109/TCBB.2019.2922955},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangSHSZ21,
author = {Meiling Wang and
Wei Shao and
Xiaoke Hao and
Li Shen and
Daoqiang Zhang},
title = {Identify Consistent Cross-Modality Imaging Genetic Patterns via Discriminant
Sparse Canonical Correlation Analysis},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {4},
pages = {1549--1561},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2944825},
doi = {10.1109/TCBB.2019.2944825},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/WangSHSZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangSJ21,
author = {Yaqi Wang and
Lingling Sun and
Qun Jin},
title = {Enhanced Diagnosis of Pneumothorax with an Improved Real-Time Augmentation
for Imbalanced Chest X-rays Data Based on {DCNN}},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {3},
pages = {951--962},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2911947},
doi = {10.1109/TCBB.2019.2911947},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangSJ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangWFGDYL21,
author = {Liguang Wang and
Yujia Wang and
Yi Fu and
Yunge Gao and
Jiawei Du and
Chen Yang and
Jianxiao Liu},
title = {{AFSBN:} {A} Method of Artificial Fish Swarm Optimizing Bayesian Network
for Epistasis Detection},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {4},
pages = {1369--1383},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2949780},
doi = {10.1109/TCBB.2019.2949780},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangWFGDYL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangYWGLW21,
author = {Chuan{-}Yuan Wang and
Na Yu and
Ming{-}Juan Wu and
Ying{-}Lian Gao and
Jin{-}Xing Liu and
Juan Wang},
title = {Dual Hyper-Graph Regularized Supervised {NMF} for Selecting Differentially
Expressed Genes and Tumor Classification},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2375--2383},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2975173},
doi = {10.1109/TCBB.2020.2975173},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangYWGLW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangZCWZXCJW21,
author = {Wenyan Wang and
Yuming Zhou and
Mu{-}Tian Cheng and
Yan Wang and
Chun{-}Hou Zheng and
Yan Xiong and
Peng Chen and
Zhiwei Ji and
Bing Wang},
title = {Potential Pathogenic Genes Prioritization Based on Protein Domain
Interaction Network Analysis},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {3},
pages = {1026--1034},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2983894},
doi = {10.1109/TCBB.2020.2983894},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangZCWZXCJW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangZZQZLL21,
author = {Linyu Wang and
Shaoge Zheng and
Hao Zhang and
Zhiyang Qiu and
Xiaodan Zhong and
Haiming Liu and
Yuanning Liu},
title = {ncRFP: {A} Novel end-to-end Method for Non-Coding RNAs Family Prediction
Based on Deep Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {2},
pages = {784--789},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2982873},
doi = {10.1109/TCBB.2020.2982873},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangZZQZLL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WeiKSP21,
author = {Dong{-}Qing Wei and
Aman Chandra Kaushik and
Gurudeeban Selvaraj and
Yi Pan},
title = {Editorial: Computational Genomics and Molecular Medicine for Emerging
{COVID-19}},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {4},
pages = {1227--1229},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2021.3088319},
doi = {10.1109/TCBB.2021.3088319},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WeiKSP21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WeiLL21,
author = {Hang Wei and
Qing Liao and
Bin Liu},
title = {iLncRNAdis-FB: Identify lncRNA-Disease Associations by Fusing Biological
Feature Blocks Through Deep Neural Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {5},
pages = {1946--1957},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2964221},
doi = {10.1109/TCBB.2020.2964221},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WeiLL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WeiWYG21,
author = {Hong Wei and
Boling Wang and
Jianyi Yang and
Jianzhao Gao},
title = {{RNA} Flexibility Prediction With Sequence Profile and Predicted Solvent
Accessibility},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {5},
pages = {2017--2022},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2956496},
doi = {10.1109/TCBB.2019.2956496},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WeiWYG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WillingSB21,
author = {Eyla Willing and
Jens Stoye and
Mar{\'{\i}}lia D. V. Braga},
title = {Computing the Inversion-Indel Distance},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2314--2326},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2988950},
doi = {10.1109/TCBB.2020.2988950},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WillingSB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WuLGFLDJL21,
author = {Hongjie Wu and
Huajing Ling and
Lei Gao and
Qiming Fu and
Weizhong Lu and
Yijie Ding and
Min Jiang and
Haiou Li},
title = {Empirical Potential Energy Function Toward ab Initio Folding {G} Protein-Coupled
Receptors},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {5},
pages = {1752--1762},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.3008014},
doi = {10.1109/TCBB.2020.3008014},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WuLGFLDJL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/XiaJZS21,
author = {Kaijian Xia and
Yizhang Jiang and
Yudong Zhang and
Wen Si},
title = {Guest Editorial: Advanced Machine-Learning Methods for Brain-Machine
Interfacing or Brain-Computer Interfacing},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {5},
pages = {1643--1644},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2021.3078145},
doi = {10.1109/TCBB.2021.3078145},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/XiaJZS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/XiaNYC21,
author = {Kaijian Xia and
Tongguang Ni and
Hongsheng Yin and
Bo Chen},
title = {Cross-Domain Classification Model With Knowledge Utilization Maximization
for Recognition of Epileptic {EEG} Signals},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {1},
pages = {53--61},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2973978},
doi = {10.1109/TCBB.2020.2973978},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/XiaNYC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/XiaoCR21,
author = {Peng Xiao and
Xingyu Cai and
Sanguthevar Rajasekaran},
title = {{EMS3:} An Improved Algorithm for Finding Edit-Distance Based Motifs},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {1},
pages = {27--37},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.3024222},
doi = {10.1109/TCBB.2020.3024222},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/XiaoCR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/XiaoLXDWRYZ21,
author = {Ming Xiao and
Guangdi Liu and
Jianghang Xie and
Zichun Dai and
Zihao Wei and
Ziyao Ren and
Jun Yu and
Le Zhang},
title = {2019nCoVAS: Developing the Web Service for Epidemic Transmission Prediction,
Genome Analysis, and Psychological Stress Assessment for 2019-nCoV},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {4},
pages = {1250--1261},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2021.3049617},
doi = {10.1109/TCBB.2021.3049617},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/XiaoLXDWRYZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/XieZSLYWN21,
author = {Jiang Xie and
Chang Zhao and
Jiamin Sun and
Jiaxin Li and
Fuzhang Yang and
Jiao Wang and
Qing Nie},
title = {Prediction of Essential Genes in Comparison States Using Machine Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {5},
pages = {1784--1792},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.3027392},
doi = {10.1109/TCBB.2020.3027392},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/XieZSLYWN21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/XingLWQYZZDT21,
author = {Jie Xing and
Zheren Li and
Biyuan Wang and
Yuji Qi and
Bingbin Yu and
Farhad Ghazvinian Zanjani and
Aiwen Zheng and
Remco Duits and
Tao Tan},
title = {Lesion Segmentation in Ultrasound Using Semi-Pixel-Wise Cycle Generative
Adversarial Nets},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2555--2565},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2978470},
doi = {10.1109/TCBB.2020.2978470},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/XingLWQYZZDT21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/XuLPLWW21,
author = {Yunpei Xu and
Hong{-}Dong Li and
Yi Pan and
Feng Luo and
Fang{-}Xiang Wu and
Jianxin Wang},
title = {A Gene Rank Based Approach for Single Cell Similarity Assessment and
Clustering},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {2},
pages = {431--442},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2931582},
doi = {10.1109/TCBB.2019.2931582},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/XuLPLWW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/XuOYZ21,
author = {Ting Xu and
Le Ou{-}Yang and
Hong Yan and
Xiao{-}Fei Zhang},
title = {Time-Varying Differential Network Analysis for Revealing Network Rewiring
over Cancer Progression},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {4},
pages = {1632--1642},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2949039},
doi = {10.1109/TCBB.2019.2949039},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/XuOYZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/XuSLCWN21,
author = {Benlian Xu and
Jian Shi and
Mingli Lu and
Jinliang Cong and
Ling Wang and
Brett Nener},
title = {An Automated Cell Tracking Approach With Multi-Bernoulli Filtering
and Ant Colony Labor Division},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {5},
pages = {1850--1863},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2954502},
doi = {10.1109/TCBB.2019.2954502},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/XuSLCWN21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/XuanCZY21,
author = {Ping Xuan and
Bingxu Chen and
Tiangang Zhang and
Yan Yang},
title = {Prediction of Drug-Target Interactions Based on Network Representation
Learning and Ensemble Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2671--2681},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2989765},
doi = {10.1109/TCBB.2020.2989765},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/XuanCZY21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YaghoobiBHE21,
author = {Hanif Yaghoobi and
Esmaeil Babaei and
Bashdar Mahmud Hussen and
Ali Emami},
title = {{EBST:} An Evolutionary Multi-Objective Optimization Based Tool for
Discovering Potential Biomarkers in Ovarian Cancer},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2384--2393},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2993150},
doi = {10.1109/TCBB.2020.2993150},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YaghoobiBHE21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YanCXSW21,
author = {Xiaodan Yan and
Baojiang Cui and
Yang Xu and
Peilin Shi and
Ziqi Wang},
title = {A Method of Information Protection for Collaborative Deep Learning
under {GAN} Model Attack},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {3},
pages = {871--881},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2940583},
doi = {10.1109/TCBB.2019.2940583},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YanCXSW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YanDWPW21,
author = {Cheng Yan and
Guihua Duan and
Fang{-}Xiang Wu and
Yi Pan and
Jianxin Wang},
title = {{MCHMDA:} Predicting Microbe-Disease Associations Based on Similarities
and Low-Rank Matrix Completion},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {2},
pages = {611--620},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2926716},
doi = {10.1109/TCBB.2019.2926716},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YanDWPW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YanHWFPP21,
author = {Lu Yan and
Weihong Huang and
Liming Wang and
Song Feng and
Yonghong Peng and
Jie Peng},
title = {Data-Enabled Digestive Medicine: {A} New Big Data Analytics Platform},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {3},
pages = {922--931},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2951555},
doi = {10.1109/TCBB.2019.2951555},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YanHWFPP21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YanJJW21,
author = {Ke Yan and
Zhiwei Ji and
Qun Jin and
Qing{-}Guo Wang},
title = {Guest Editorial: Machine Learning for AI-Enhanced Healthcare and Medical
Services: New Development and Promising Solution},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {3},
pages = {850--851},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2021.3050935},
doi = {10.1109/TCBB.2021.3050935},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YanJJW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YanTC21,
author = {Da Yan and
Sharma V. Thankachan and
Jake Y. Chen},
title = {Guest Editorial for Selected Papers From {BIOKDD} 2019},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {3},
pages = {809--810},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2021.3067071},
doi = {10.1109/TCBB.2021.3067071},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YanTC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YanWLXL21,
author = {Ke Yan and
Jie Wen and
Jin{-}Xing Liu and
Yong Xu and
Bin Liu},
title = {Protein Fold Recognition by Combining Support Vector Machines and
Pairwise Sequence Similarity Scores},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {5},
pages = {2008--2016},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2966450},
doi = {10.1109/TCBB.2020.2966450},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YanWLXL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YanWXL21,
author = {Ke Yan and
Jie Wen and
Yong Xu and
Bin Liu},
title = {Protein Fold Recognition Based on Auto-Weighted Multi-View Graph Embedding
Learning Model},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2682--2691},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2991268},
doi = {10.1109/TCBB.2020.2991268},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YanWXL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YangHZB21,
author = {Jie Yang and
Song He and
Zhongnan Zhang and
Xiaochen Bo},
title = {NegStacking: Drug-Target Interaction Prediction Based on Ensemble
Learning and Logistic Regression},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2624--2634},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2968025},
doi = {10.1109/TCBB.2020.2968025},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YangHZB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YangYGYZW21,
author = {Ziying Yang and
Guoxian Yu and
Maozu Guo and
Jiantao Yu and
Xiangliang Zhang and
Jun Wang},
title = {CDPath: Cooperative Driver Pathways Discovery Using Integer Linear
Programming and Markov Clustering},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {4},
pages = {1384--1395},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2945029},
doi = {10.1109/TCBB.2019.2945029},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YangYGYZW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YangZPSZH21,
author = {Bo Yang and
Yupei Zhang and
Shanmin Pang and
Xuequn Shang and
Xueqing Zhao and
Minghui Han},
title = {Integrating Multi-Omic Data With Deep Subspace Fusion Clustering for
Cancer Subtype Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {1},
pages = {216--226},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2951413},
doi = {10.1109/TCBB.2019.2951413},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YangZPSZH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YiYGHC21,
author = {Hai{-}Cheng Yi and
Zhu{-}Hong You and
Zhen{-}Hao Guo and
De{-}Shuang Huang and
Keith C. C. Chan},
title = {Learning Representation of Molecules in Association Network for Predicting
Intermolecular Associations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2546--2554},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2973091},
doi = {10.1109/TCBB.2020.2973091},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YiYGHC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YilmazTC21,
author = {Serhan Yilmaz and
{\"{O}}znur Tastan and
A. Erc{\"{u}}ment {\c{C}}i{\c{c}}ek},
title = {{SPADIS:} An Algorithm for Selecting Predictive and Diverse SNPs in
{GWAS}},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {3},
pages = {1208--1216},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2935437},
doi = {10.1109/TCBB.2019.2935437},
timestamp = {Sat, 20 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YilmazTC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YinCGLG21,
author = {Meng{-}Meng Yin and
Zhen Cui and
Ming{-}Ming Gao and
Jin{-}Xing Liu and
Ying{-}Lian Gao},
title = {{LWPCMF:} Logistic Weighted Profile-Based Collaborative Matrix Factorization
for Predicting MiRNA-Disease Associations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {3},
pages = {1122--1129},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2937774},
doi = {10.1109/TCBB.2019.2937774},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YinCGLG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YuKGKCZ21,
author = {Xiang Yu and
Cheng Kang and
David S. Guttery and
Seifedine Nimer Kadry and
Yang Chen and
Yu{-}Dong Zhang},
title = {ResNet-SCDA-50 for Breast Abnormality Classification},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {1},
pages = {94--102},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2986544},
doi = {10.1109/TCBB.2020.2986544},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YuKGKCZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YuLJY21,
author = {Zhimiao Yu and
Jiarui Lu and
Yuan Jin and
Yang Yang},
title = {KenDTI: An Ensemble Model for Predicting Drug-Target Interaction by
Integrating Multi-Source Information},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {4},
pages = {1305--1314},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2021.3074401},
doi = {10.1109/TCBB.2021.3074401},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YuLJY21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YuLZW21,
author = {Tingting Yu and
Jianxing Liu and
Qingshuang Zeng and
Ligang Wu},
title = {Dissipativity-Based Filtering for Switched Genetic Regulatory Networks
with Stochastic Disturbances and Time-Varying Delays},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {3},
pages = {1082--1092},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2936351},
doi = {10.1109/TCBB.2019.2936351},
timestamp = {Wed, 13 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/YuLZW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YuanLBX21,
author = {Xiguo Yuan and
Junping Li and
Jun Bai and
Jianing Xi},
title = {A Local Outlier Factor-Based Detection of Copy Number Variations From
{NGS} Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {5},
pages = {1811--1820},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2961886},
doi = {10.1109/TCBB.2019.2961886},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YuanLBX21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YuanLWS21,
author = {Shaoxun Yuan and
Haitao Li and
Jiansheng Wu and
Xiao Sun},
title = {Classification of Mild Cognitive Impairment With Multimodal Data Using
Both Labeled and Unlabeled Samples},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2281--2290},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2021.3053061},
doi = {10.1109/TCBB.2021.3053061},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YuanLWS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YuanMZYWX21,
author = {Xiguo Yuan and
Chao Ma and
Haiyong Zhao and
Liying Yang and
Shuzhen Wang and
Jianing Xi},
title = {{STIC:} Predicting Single Nucleotide Variants and Tumor Purity in
Cancer Genome},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2692--2701},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2975181},
doi = {10.1109/TCBB.2020.2975181},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YuanMZYWX21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YuanXZD21,
author = {Xiguo Yuan and
Xiangyan Xu and
Haiyong Zhao and
Junbo Duan},
title = {{ERINS:} Novel Sequence Insertion Detection by Constructing an Extended
Reference},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {5},
pages = {1893--1901},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2954315},
doi = {10.1109/TCBB.2019.2954315},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YuanXZD21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YuanYXYSLD21,
author = {Xiguo Yuan and
Jiaao Yu and
Jianing Xi and
Liying Yang and
Junliang Shang and
Zhe Li and
Junbo Duan},
title = {CNV{\_}IFTV: An Isolation Forest and Total Variation-Based Detection
of CNVs from Short-Read Sequencing Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {2},
pages = {539--549},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2920889},
doi = {10.1109/TCBB.2019.2920889},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YuanYXYSLD21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZengLFWLPW21,
author = {Min Zeng and
Min Li and
Zhihui Fei and
Fang{-}Xiang Wu and
Yaohang Li and
Yi Pan and
Jianxin Wang},
title = {A Deep Learning Framework for Identifying Essential Proteins by Integrating
Multiple Types of Biological Information},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {1},
pages = {296--305},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2897679},
doi = {10.1109/TCBB.2019.2897679},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZengLFWLPW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZengLFWLWL21,
author = {Min Zeng and
Chengqian Lu and
Zhihui Fei and
Fang{-}Xiang Wu and
Yaohang Li and
Jianxin Wang and
Min Li},
title = {{DMFLDA:} {A} Deep Learning Framework for Predicting lncRNA-Disease
Associations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2353--2363},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2983958},
doi = {10.1109/TCBB.2020.2983958},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZengLFWLWL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Zhang21,
author = {Aidong Zhang},
title = {{EIC} Farewell and New {EIC} Introduction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2057},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2021.3125125},
doi = {10.1109/TCBB.2021.3125125},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Zhang21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangBYCLY21,
author = {Qingchen Zhang and
Changchuan Bai and
Laurence T. Yang and
Zhikui Chen and
Peng Li and
Hang Yu},
title = {A Unified Smart Chinese Medicine Framework for Healthcare and Medical
Services},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {3},
pages = {882--890},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2914447},
doi = {10.1109/TCBB.2019.2914447},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangBYCLY21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangCL21,
author = {Jun Zhang and
Qingcai Chen and
Bin Liu},
title = {DeepDRBP-2L: {A} New Genome Annotation Predictor for Identifying DNA-Binding
Proteins and RNA-Binding Proteins Using Convolutional Neural Network
and Long Short-Term Memory},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {4},
pages = {1451--1463},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2952338},
doi = {10.1109/TCBB.2019.2952338},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangCL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangD21,
author = {Chen Zhang and
Yanrui Ding},
title = {Probing the Relation Between Community Evolution in Dynamic Residue
Interaction Networks and Xylanase Thermostability},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {2},
pages = {686--696},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2922906},
doi = {10.1109/TCBB.2019.2922906},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangD21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangFHCW21,
author = {Aiying Zhang and
Jian Fang and
Wenxing Hu and
Vince D. Calhoun and
Yu{-}Ping Wang},
title = {A Latent Gaussian Copula Model for Mixed Data Analysis in Brain Imaging
Genetics},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {4},
pages = {1350--1360},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2950904},
doi = {10.1109/TCBB.2019.2950904},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangFHCW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangK21,
author = {Da Zhang and
Mansur R. Kabuka},
title = {Protein Family Classification from Scratch: {A} {CNN} Based Deep Learning
Approach},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {5},
pages = {1996--2007},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2966633},
doi = {10.1109/TCBB.2020.2966633},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangK21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangLCXSLL21,
author = {Wenju Zhang and
Zhewei Liang and
Xin Chen and
Lei Xin and
Baozhen Shan and
Zhigang Luo and
Ming Li},
title = {ChimST: An Efficient Spectral Library Search Tool for Peptide Identification
from Chimeric Spectra in Data-Dependent Acquisition},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {4},
pages = {1416--1425},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2945954},
doi = {10.1109/TCBB.2019.2945954},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangLCXSLL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangLGYH21,
author = {Wen Zhang and
Zhishuai Li and
Wenzheng Guo and
Weitai Yang and
Feng Huang},
title = {A Fast Linear Neighborhood Similarity-Based Network Link Inference
Method to Predict MicroRNA-Disease Associations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {2},
pages = {405--415},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2931546},
doi = {10.1109/TCBB.2019.2931546},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangLGYH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangLSLWPW21,
author = {Zhen Zhang and
Junwei Luo and
Juan Shang and
Min Li and
Fang{-}Xiang Wu and
Yi Pan and
Jianxin Wang},
title = {Deletion Detection Method Using the Distribution of Insert Size and
a Precise Alignment Strategy},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {3},
pages = {1070--1081},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2934407},
doi = {10.1109/TCBB.2019.2934407},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangLSLWPW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangPCSLZ21,
author = {Louxin Zhang and
Shaoliang Peng and
Yi{-}Ping Phoebe Chen and
David Sankoff and
Guoliang Li and
Hong{-}Yu Zhang},
title = {Guest Editorial for the 17th Asia Pacific Bioinformatics Conference},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2123--2124},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2021.3099948},
doi = {10.1109/TCBB.2021.3099948},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangPCSLZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangSH21,
author = {Qinhu Zhang and
Zhen Shen and
De{-}Shuang Huang},
title = {Predicting in-vitro Transcription Factor Binding Sites Using {DNA}
Sequence + Shape},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {2},
pages = {667--676},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2947461},
doi = {10.1109/TCBB.2019.2947461},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangSH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangSZWLPL21,
author = {Fuhao Zhang and
Hong Song and
Min Zeng and
Fang{-}Xiang Wu and
Yaohang Li and
Yi Pan and
Min Li},
title = {A Deep Learning Framework for Gene Ontology Annotations With Sequence-
and Network-Based Information},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2208--2217},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2968882},
doi = {10.1109/TCBB.2020.2968882},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangSZWLPL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangWHH21,
author = {Qinhu Zhang and
Dailun Wang and
Kyungsook Han and
De{-}Shuang Huang},
title = {Predicting {TF-DNA} Binding Motifs from ChIP-seq Datasets Using the
Bag-Based Classifier Combined With a Multi-Fold Learning Scheme},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {5},
pages = {1743--1751},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.3025007},
doi = {10.1109/TCBB.2020.3025007},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangWHH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangWLZ21,
author = {Jingrong Zhang and
Zihao Wang and
Zhiyong Liu and
Fa Zhang},
title = {Improve the Resolution and Parallel Performance of the Three-Dimensional
Refine Algorithm in {RELION} Using {CUDA} and {MPI}},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {2},
pages = {583--595},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2929171},
doi = {10.1109/TCBB.2019.2929171},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangWLZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangXZWH21,
author = {Gui{-}Jun Zhang and
Tengyu Xie and
Xiao{-}Gen Zhou and
Liu{-}Jing Wang and
Jun Hu},
title = {Protein Structure Prediction Using Population-Based Algorithm Guided
by Information Entropy},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {2},
pages = {697--707},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2921958},
doi = {10.1109/TCBB.2019.2921958},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangXZWH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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