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@article{DBLP:journals/bmcsb/AdapaTWTJJ19, author = {Swamy Rakesh Adapa and Rachel A. Taylor and Chengqi Wang and Richard Thomson{-}Luque and Leah R. Johnson and Rays H. Y. Jiang}, title = {Plasmodium vivax readiness to transmit: implication for malaria eradication}, journal = {{BMC} Syst. Biol.}, volume = {13}, number = {1}, pages = {5:1--5:12}, year = {2019}, url = {https://doi.org/10.1186/s12918-018-0669-4}, doi = {10.1186/S12918-018-0669-4}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/AdapaTWTJJ19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Anda-JaureguiGM19, author = {Guillermo de Anda{-}J{\'{a}}uregui and Kai Guo and Brett A. McGregor and Eva L. Feldman and Junguk Hur}, title = {Pathway crosstalk perturbation network modeling for identification of connectivity changes induced by diabetic neuropathy and pioglitazone}, journal = {{BMC} Syst. Biol.}, volume = {13}, number = {1}, pages = {1:1--1:11}, year = {2019}, url = {https://doi.org/10.1186/s12918-018-0674-7}, doi = {10.1186/S12918-018-0674-7}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Anda-JaureguiGM19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Anda-JaureguiGM19a, author = {Guillermo de Anda{-}J{\'{a}}uregui and Kai Guo and Brett A. McGregor and Eva L. Feldman and Junguk Hur}, title = {Correction to: Pathway crosstalk perturbation network modeling for identification of connectivity changes induced by diabetic neuropathy and pioglitazone}, journal = {{BMC} Syst. Biol.}, volume = {13}, number = {1}, pages = {31:1}, year = {2019}, url = {https://doi.org/10.1186/s12918-019-0707-x}, doi = {10.1186/S12918-019-0707-X}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Anda-JaureguiGM19a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BanckG19, author = {Jan Christoph Banck and Dennis G{\"{o}}rlich}, title = {In-silico comparison of two induction regimens {(7} + 3 vs 7 + 3 plus additional bone marrow evaluation) in acute myeloid leukemia treatment}, journal = {{BMC} Syst. Biol.}, volume = {13}, number = {1}, pages = {18:1--18:14}, year = {2019}, url = {https://doi.org/10.1186/s12918-019-0684-0}, doi = {10.1186/S12918-019-0684-0}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BanckG19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ContadorRAA19, author = {Carolina A. Contador and Vida Rodr{\'{\i}}guez and Barbara A. Andrews and Juan A. Asenjo}, title = {Use of genome-scale models to get new insights into the marine actinomycete genus Salinispora}, journal = {{BMC} Syst. Biol.}, volume = {13}, number = {1}, pages = {11:1--11:14}, year = {2019}, url = {https://doi.org/10.1186/s12918-019-0683-1}, doi = {10.1186/S12918-019-0683-1}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ContadorRAA19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/DuttaMASZ19, author = {Pritha Dutta and Lichun Ma and Yusuf Ali and Peter M. A. Sloot and Jie Zheng}, title = {Boolean network modeling of {\(\beta\)}-cell apoptosis and insulin resistance in type 2 diabetes mellitus}, journal = {{BMC} Syst. Biol.}, volume = {13-S}, number = {2}, pages = {36:1--36:12}, year = {2019}, url = {https://doi.org/10.1186/s12918-019-0692-0}, doi = {10.1186/S12918-019-0692-0}, timestamp = {Thu, 02 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/DuttaMASZ19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GeraldDBS19, author = {Nishant Gerald and Dibyendu Dutta and R. G. Brajesh and Supreet Saini}, title = {Mathematical modeling of movement on fitness landscapes}, journal = {{BMC} Syst. Biol.}, volume = {13}, number = {1}, pages = {25:1--25:10}, year = {2019}, url = {https://doi.org/10.1186/s12918-019-0704-0}, doi = {10.1186/S12918-019-0704-0}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GeraldDBS19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GoTIBD19, author = {Natacha Go and Suzanne Touzeau and Zeenath Islam and Catherine Belloc and Andrea Doeschl{-}Wilson}, title = {How to prevent viremia rebound? Evidence from a PRRSv data-supported model of immune response}, journal = {{BMC} Syst. Biol.}, volume = {13}, number = {1}, pages = {15:1--15:21}, year = {2019}, url = {https://doi.org/10.1186/s12918-018-0666-7}, doi = {10.1186/S12918-018-0666-7}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/GoTIBD19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HaPP19, author = {Jihwan Ha and Chihyun Park and Sanghyun Park}, title = {{PMAMCA:} prediction of microRNA-disease association utilizing a matrix completion approach}, journal = {{BMC} Syst. Biol.}, volume = {13}, number = {1}, pages = {33:1--33:13}, year = {2019}, url = {https://doi.org/10.1186/s12918-019-0700-4}, doi = {10.1186/S12918-019-0700-4}, timestamp = {Wed, 01 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/HaPP19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HaoDKBHTKFWSHK19, author = {Yangyang Hao and Quan{-}Yang Duh and Richard T. Kloos and Joshua Babiarz and R. Mack Harrell and S. Thomas Traweek and Su Yeon Kim and Grazyna Fedorowicz and P. Sean Walsh and Peter M. Sadow and Jing Huang and Giulia C. Kennedy}, title = {Identification of H{\"{u}}rthle cell cancers: solving a clinical challenge with genomic sequencing and a trio of machine learning algorithms}, journal = {{BMC} Syst. Biol.}, volume = {13-S}, number = {2}, pages = {27:1--27:14}, year = {2019}, url = {https://doi.org/10.1186/s12918-019-0693-z}, doi = {10.1186/S12918-019-0693-Z}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HaoDKBHTKFWSHK19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/JansenPHW19, author = {Martin Jansen and Gerhard Puetz and Michael M. Hoffmann and Karl Winkler}, title = {A mathematical model to estimate cholesterylester transfer protein {(CETP)} triglycerides flux in human plasma}, journal = {{BMC} Syst. Biol.}, volume = {13}, number = {1}, pages = {12:1--12:12}, year = {2019}, url = {https://doi.org/10.1186/s12918-019-0679-x}, doi = {10.1186/S12918-019-0679-X}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/JansenPHW19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KCLCYH19, author = {Kishan KC and Rui Li and Feng Cui and Qi Yu and Anne R. Haake}, title = {{GNE:} a deep learning framework for gene network inference by aggregating biological information}, journal = {{BMC} Syst. Biol.}, volume = {13-S}, number = {2}, pages = {38:1--38:14}, year = {2019}, url = {https://doi.org/10.1186/s12918-019-0694-y}, doi = {10.1186/S12918-019-0694-Y}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KCLCYH19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KrishnanF19, author = {Jawahar Krishnan and Ioannis Floros}, title = {Adaptive information processing of network modules to dynamic and spatial stimuli}, journal = {{BMC} Syst. Biol.}, volume = {13}, number = {1}, pages = {32:1--32:26}, year = {2019}, url = {https://doi.org/10.1186/s12918-019-0703-1}, doi = {10.1186/S12918-019-0703-1}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KrishnanF19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LaiF19, author = {Xiulan Lai and Avner Friedman}, title = {How to schedule {VEGF} and {PD-1} inhibitors in combination cancer therapy?}, journal = {{BMC} Syst. Biol.}, volume = {13}, number = {1}, pages = {30:1--30:18}, year = {2019}, url = {https://doi.org/10.1186/s12918-019-0706-y}, doi = {10.1186/S12918-019-0706-Y}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LaiF19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiLGY19, author = {Xiaoying Li and Yaping Lin and Changlong Gu and Jialiang Yang}, title = {{FCMDAP:} using miRNA family and cluster information to improve the prediction accuracy of disease related miRNAs}, journal = {{BMC} Syst. Biol.}, volume = {13-S}, number = {2}, pages = {26:1--26:16}, year = {2019}, url = {https://doi.org/10.1186/s12918-019-0696-9}, doi = {10.1186/S12918-019-0696-9}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiLGY19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiuBAZFCZ19, author = {Guan{-}Sheng Liu and Richard Ballweg and Alan Ashbaugh and Yin Zhang and Joseph Facciolo and Melanie T. Cushion and Tongli Zhang}, title = {Correction to: {A} quantitative systems pharmacology {(QSP)} model for Pneumocystis treatment in mice}, journal = {{BMC} Syst. Biol.}, volume = {13}, number = {1}, pages = {40:1--40:7}, year = {2019}, url = {https://doi.org/10.1186/s12918-019-0708-9}, doi = {10.1186/S12918-019-0708-9}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiuBAZFCZ19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiuCGYZGW19, author = {Xiaoting Liu and Jinhu Chen and Tianyuan Guan and Hui Yao and Wenpei Zhang and Zhenlong Guan and Yanqin Wang}, title = {miRNAs and target genes in the blood as biomarkers for the early diagnosis of Parkinson's disease}, journal = {{BMC} Syst. Biol.}, volume = {13}, number = {1}, pages = {10:1--10:8}, year = {2019}, url = {https://doi.org/10.1186/s12918-019-0680-4}, doi = {10.1186/S12918-019-0680-4}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiuCGYZGW19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiuCGYZGW19a, author = {Xiaoting Liu and Jinhu Chen and Tianyuan Guan and Hui Yao and Wenpei Zhang and Zhenlong Guan and Yanqin Wang}, title = {Correction to: miRNAs and target genes in the blood as biomarkers for the early diagnosis of Parkinson's disease}, journal = {{BMC} Syst. Biol.}, volume = {13}, number = {1}, pages = {20:1--20:2}, year = {2019}, url = {https://doi.org/10.1186/s12918-019-0701-3}, doi = {10.1186/S12918-019-0701-3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiuCGYZGW19a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiuLZCZDCLZR19, author = {Lunfei Liu and Wenting Liu and Yuxin Zheng and Jisu Chen and Jiong Zhou and Huatuo Dai and Suiqing Cai and Jianjun Liu and Min Zheng and Yunqing Ren}, title = {Anti-TNF- {\(\alpha\)}treatment-related pathways and biomarkers revealed by transcriptome analysis in Chinese psoriasis patients}, journal = {{BMC} Syst. Biol.}, volume = {13-S}, number = {2}, pages = {29:1--29:9}, year = {2019}, url = {https://doi.org/10.1186/s12918-019-0698-7}, doi = {10.1186/S12918-019-0698-7}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/LiuLZCZDCLZR19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiuR19, author = {Wenting Liu and Jagath C. Rajapakse}, title = {Fusing gene expressions and transitive protein-protein interactions for inference of gene regulatory networks}, journal = {{BMC} Syst. Biol.}, volume = {13-S}, number = {2}, pages = {37:1--37:13}, year = {2019}, url = {https://doi.org/10.1186/s12918-019-0695-x}, doi = {10.1186/S12918-019-0695-X}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiuR19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MoskalevPZS19, author = {Alexey Moskalev and Ekaterina Proshkina and Alex Zhavoronkov and Mikhail Shaposhnikov}, title = {Effects of unpaired 1 gene overexpression on the lifespan of Drosophila melanogaster}, journal = {{BMC} Syst. Biol.}, volume = {13-S}, number = {1}, pages = {13--22}, year = {2019}, url = {https://doi.org/10.1186/s12918-019-0687-x}, doi = {10.1186/S12918-019-0687-X}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/MoskalevPZS19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/OrlovHB19, author = {Yuriy L. Orlov and Ralf Hofest{\"{a}}dt and Ancha V. Baranova}, title = {Systems biology research at {BGRS-2018}}, journal = {{BMC} Syst. Biol.}, volume = {13-S}, number = {1}, pages = {21:1--21:2}, year = {2019}, url = {https://doi.org/10.1186/s12918-019-0685-z}, doi = {10.1186/S12918-019-0685-Z}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/OrlovHB19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PastushkovaRGBK19, author = {Lyudmila Kh. Pastushkova and Vasily B. Rusanov and Anna G. Goncharova and Alexander G. Brzhozovskiy and Alexey S. Kononikhin and Anna G. Chernikova and Daria N. Kashirina and Andrey M. Nosovsky and Roman M. Baevsky and Evgeny N. Nikolaev and Irina M. Larina}, title = {Urine proteome changes associated with autonomic regulation of heart rate in cosmonauts}, journal = {{BMC} Syst. Biol.}, volume = {13-S}, number = {1}, pages = {23--31}, year = {2019}, url = {https://doi.org/10.1186/s12918-019-0688-9}, doi = {10.1186/S12918-019-0688-9}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PastushkovaRGBK19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ReynoldsHSP19, author = {Elaine R. Reynolds and Ryan Himmelwright and Christopher Sanginiti and Jeffrey O. Pfaffmann}, title = {An agent-based model of the Notch signaling pathway elucidates three levels of complexity in the determination of developmental patterning}, journal = {{BMC} Syst. Biol.}, volume = {13}, number = {1}, pages = {7:1--7:16}, year = {2019}, url = {https://doi.org/10.1186/s12918-018-0672-9}, doi = {10.1186/S12918-018-0672-9}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ReynoldsHSP19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/RozendaalWHR19, author = {Yvonne J. W. Rozendaal and Yanan Wang and Peter A. J. Hilbers and Natal A. W. van Riel}, title = {Computational modelling of energy balance in individuals with Metabolic Syndrome}, journal = {{BMC} Syst. Biol.}, volume = {13}, number = {1}, pages = {24:1--24:14}, year = {2019}, url = {https://doi.org/10.1186/s12918-019-0705-z}, doi = {10.1186/S12918-019-0705-Z}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/RozendaalWHR19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SakharovMKNPSBT19, author = {Dmitry Sakharov and Diana V. Maltseva and Evgeny Knyazev and Sergey Nikulin and Andrey Poloznikov and Sergey Shilin and Ancha V. Baranova and Irina Tsypina and Alexander G. Tonevitsky}, title = {Towards embedding Caco-2 model of gut interface in a microfluidic device to enable multi-organ models for systems biology}, journal = {{BMC} Syst. Biol.}, volume = {13-S}, number = {1}, pages = {3--11}, year = {2019}, url = {https://doi.org/10.1186/s12918-019-0686-y}, doi = {10.1186/S12918-019-0686-Y}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SakharovMKNPSBT19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SanchezLKN19, author = {Benjam{\'{\i}}n J. S{\'{a}}nchez and Feiran Li and Eduard J. Kerkhoven and Jens Nielsen}, title = {SLIMEr: probing flexibility of lipid metabolism in yeast with an improved constraint-based modeling framework}, journal = {{BMC} Syst. Biol.}, volume = {13}, number = {1}, pages = {4:1--4:9}, year = {2019}, url = {https://doi.org/10.1186/s12918-018-0673-8}, doi = {10.1186/S12918-018-0673-8}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/SanchezLKN19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SunCLS19, author = {Shiquan Sun and Yabo Chen and Yang Liu and Xuequn Shang}, title = {A fast and efficient count-based matrix factorization method for detecting cell types from single-cell RNAseq data}, journal = {{BMC} Syst. Biol.}, volume = {13-S}, number = {2}, pages = {28:1--28:8}, year = {2019}, url = {https://doi.org/10.1186/s12918-019-0699-6}, doi = {10.1186/S12918-019-0699-6}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SunCLS19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TabeiKSY19, author = {Yasuo Tabei and Masaaki Kotera and Ryusuke Sawada and Yoshihiro Yamanishi}, title = {Network-based characterization of drug-protein interaction signatures with a space-efficient approach}, journal = {{BMC} Syst. Biol.}, volume = {13-S}, number = {2}, pages = {39:1--39:15}, year = {2019}, url = {https://doi.org/10.1186/s12918-019-0691-1}, doi = {10.1186/S12918-019-0691-1}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/TabeiKSY19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/VermaSV19, author = {Babita K. Verma and Pushpavanam Subramaniam and Rajanikanth Vadigepalli}, title = {Model-based virtual patient analysis of human liver regeneration predicts critical perioperative factors controlling the dynamic mode of response to resection}, journal = {{BMC} Syst. Biol.}, volume = {13}, number = {1}, pages = {9:1--9:15}, year = {2019}, url = {https://doi.org/10.1186/s12918-019-0678-y}, doi = {10.1186/S12918-019-0678-Y}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/VermaSV19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WoffordL19, author = {Joshua D. Wofford and Paul A. Lindahl}, title = {A mathematical model of iron import and trafficking in wild-type and Mrs3/4{\(\Delta\)}{\(\Delta\)} yeast cells}, journal = {{BMC} Syst. Biol.}, volume = {13}, number = {1}, pages = {23:1--23:16}, year = {2019}, url = {https://doi.org/10.1186/s12918-019-0702-2}, doi = {10.1186/S12918-019-0702-2}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WoffordL19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WuWO19, author = {Lili Wu and Hongli Wang and Qi Ouyang}, title = {Constructing network topologies for multiple signal-encoding functions}, journal = {{BMC} Syst. Biol.}, volume = {13}, number = {1}, pages = {6:1--6:13}, year = {2019}, url = {https://doi.org/10.1186/s12918-018-0676-5}, doi = {10.1186/S12918-018-0676-5}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WuWO19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/XuePS19, author = {Hansheng Xue and Jiajie Peng and Xuequn Shang}, title = {Predicting disease-related phenotypes using an integrated phenotype similarity measurement based on {HPO}}, journal = {{BMC} Syst. Biol.}, volume = {13-S}, number = {2}, pages = {34:1--34:12}, year = {2019}, url = {https://doi.org/10.1186/s12918-019-0697-8}, doi = {10.1186/S12918-019-0697-8}, timestamp = {Sun, 12 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/XuePS19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YangELSP19, author = {Laurence Yang and Ali Ebrahim and Colton J. Lloyd and Michael A. Saunders and Bernhard O. Palsson}, title = {DynamicME: dynamic simulation and refinement of integrated models of metabolism and protein expression}, journal = {{BMC} Syst. Biol.}, volume = {13}, number = {1}, pages = {2:1--2:15}, year = {2019}, url = {https://doi.org/10.1186/s12918-018-0675-6}, doi = {10.1186/S12918-018-0675-6}, timestamp = {Fri, 05 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/YangELSP19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YangWYZCG19, author = {Mary Qu Yang and Sherman Morton Weissman and William Yang and Jialing Zhang and Allon Canaan and Renchu Guan}, title = {Correction to: {MISC:} missing imputation for single-cell {RNA} sequencing data}, journal = {{BMC} Syst. Biol.}, volume = {13}, number = {1}, pages = {13:1}, year = {2019}, url = {https://doi.org/10.1186/s12918-019-0681-3}, doi = {10.1186/S12918-019-0681-3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/YangWYZCG19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YangWZXZSH19, author = {Qichang Yang and Jing Wu and Jian Zhao and Tianyi Xu and Zhongming Zhao and Xiaofeng Song and Ping Han}, title = {Correction to: circular {RNA} expression profiles during the differentiation of mouse neural stem cells}, journal = {{BMC} Syst. Biol.}, volume = {13}, number = {1}, pages = {14:1}, year = {2019}, url = {https://doi.org/10.1186/s12918-019-0682-2}, doi = {10.1186/S12918-019-0682-2}, timestamp = {Wed, 03 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/YangWZXZSH19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YeH19, author = {Xiaoxin Ye and Joshua Wing Kei Ho}, title = {Ultrafast clustering of single-cell flow cytometry data using FlowGrid}, journal = {{BMC} Syst. Biol.}, volume = {13-S}, number = {2}, pages = {35:1--35:8}, year = {2019}, url = {https://doi.org/10.1186/s12918-019-0690-2}, doi = {10.1186/S12918-019-0690-2}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/YeH19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZengY19, author = {Hong Zeng and Aidong Yang}, title = {Modelling overflow metabolism in Escherichia coli with flux balance analysis incorporating differential proteomic efficiencies of energy pathways}, journal = {{BMC} Syst. Biol.}, volume = {13}, number = {1}, pages = {3:1--3:18}, year = {2019}, url = {https://doi.org/10.1186/s12918-018-0677-4}, doi = {10.1186/S12918-018-0677-4}, timestamp = {Fri, 21 Jun 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ZengY19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZhaoJSARY19, author = {Yuqi Zhao and Deepali Jhamb and Le Shu and Douglas Arneson and Deepak K. Rajpal and Xia Yang}, title = {Multi-omics integration reveals molecular networks and regulators of psoriasis}, journal = {{BMC} Syst. Biol.}, volume = {13}, number = {1}, pages = {8:1--8:14}, year = {2019}, url = {https://doi.org/10.1186/s12918-018-0671-x}, doi = {10.1186/S12918-018-0671-X}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/ZhaoJSARY19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZubairovaVOED19, author = {Ulyana S. Zubairova and Pavel Yu. Verman and Polina A. Oshchepkova and Alina S. Elsukova and Alexey V. Doroshkov}, title = {{LSM-W2:} laser scanning microscopy worker for wheat leaf surface morphology}, journal = {{BMC} Syst. Biol.}, volume = {13-S}, number = {1}, pages = {33--44}, year = {2019}, url = {https://doi.org/10.1186/s12918-019-0689-8}, doi = {10.1186/S12918-019-0689-8}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ZubairovaVOED19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/AnandSC18, author = {Rajat Anand and Dipanka Sarmah and Samrat Chatterjee}, title = {Extracting proteins involved in disease progression using temporally connected networks}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {78:1--78:13}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0600-z}, doi = {10.1186/S12918-018-0600-Z}, timestamp = {Sat, 30 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/AnandSC18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/AshtianiSRHWMJ18, author = {Minoo Ashtiani and Ali Salehzadeh{-}Yazdi and Zahra Razaghi{-}Moghadam and Holger Hennig and Olaf Wolkenhauer and Mehdi Mirzaie and Mohieddin Jafari}, title = {A systematic survey of centrality measures for protein-protein interaction networks}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {80:1--80:17}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0598-2}, doi = {10.1186/S12918-018-0598-2}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/AshtianiSRHWMJ18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BelorkarVW18, author = {Abha Belorkar and Rajanikanth Vadigepalli and Limsoon Wong}, title = {SPSNet: subpopulation-sensitive network-based analysis of heterogeneous gene expression data}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {{S-2}}, pages = {93--108}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0538-1}, doi = {10.1186/S12918-018-0538-1}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BelorkarVW18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BuigaETS18, author = {Petronela Buiga and Ari Elson and Lydia Tabernero and Jean{-}Marc Schwartz}, title = {Regulation of dual specificity phosphatases in breast cancer during initial treatment with Herceptin: a Boolean model analysis}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {13--24}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0534-5}, doi = {10.1186/S12918-018-0534-5}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BuigaETS18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/CaoWLZQ18, author = {Yan{-}feng Cao and Shi{-}feng Wang and Xi Li and Yanling Zhang and Yanjiang Qiao}, title = {The anticancer mechanism investigation of Tanshinone {IIA} by pharmacological clustering in protein network}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {90:1--90:12}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0606-6}, doi = {10.1186/S12918-018-0606-6}, timestamp = {Wed, 31 Jul 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/CaoWLZQ18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/CasagrandaTRG18, author = {Stefano Casagranda and Suzanne Touzeau and Delphine Ropers and Jean{-}Luc Gouz{\'{e}}}, title = {Principal process analysis of biological models}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {68:1--68:26}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0586-6}, doi = {10.1186/S12918-018-0586-6}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/CasagrandaTRG18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChooBJC18, author = {Sang{-}Mok Choo and Byunghyun Ban and Jae Il Joo and Kwang{-}Hyun Cho}, title = {The phenotype control kernel of a biomolecular regulatory network}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {49:1--49:15}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0576-8}, doi = {10.1186/S12918-018-0576-8}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChooBJC18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/CogillSYW18, author = {Steven B. Cogill and Anand K. Srivastava and Mary Qu Yang and Liangjiang Wang}, title = {Co-expression of long non-coding RNAs and autism risk genes in the developing human brain}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {7}, pages = {65--73}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0639-x}, doi = {10.1186/S12918-018-0639-X}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/CogillSYW18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ConradKHKMVGJBV18, author = {Theresia Conrad and Olaf Kniemeyer and Sebastian Henkel and Thomas Kr{\"{u}}ger and D. J. Mattern and Vito Valiante and Reinhard Guthke and I. D. Jacobsen and Axel A. Brakhage and Sebastian Vlaic and J{\"{o}}rg Linde}, title = {Module-detection approaches for the integration of multilevel omics data highlight the comprehensive response of Aspergillus fumigatus to caspofungin}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {88:1--88:18}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0620-8}, doi = {10.1186/S12918-018-0620-8}, timestamp = {Thu, 24 Nov 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/ConradKHKMVGJBV18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/CookAHOV18, author = {Daniel Cook and Sirisha Achanta and Jan B. Hoek and Babatunde A. Ogunnaike and Rajanikanth Vadigepalli}, title = {Cellular network modeling and single cell gene expression analysis reveals novel hepatic stellate cell phenotypes controlling liver regeneration dynamics}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {86:1--86:29}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0605-7}, doi = {10.1186/S12918-018-0605-7}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/CookAHOV18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/CuiY18, author = {Fangshu Cui and Bo Yuan}, title = {Fixation probability of a beneficial mutation conferring decreased generation time in changing environments}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {4}, pages = {157--166}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0575-9}, doi = {10.1186/S12918-018-0575-9}, timestamp = {Sat, 06 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/CuiY18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/DaiLLLL18, author = {Wentao Dai and Quanxue Li and Bing{-}Ya Liu and Yi{-}Xue Li and Yuan{-}Yuan Li}, title = {Differential networking meta-analysis of gastric cancer across Asian and American racial groups}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {4}, pages = {17--28}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0564-z}, doi = {10.1186/S12918-018-0564-Z}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/DaiLLLL18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/DimitrovaCLS18, author = {Elena S. Dimitrova and Leslie A. Caromile and Reinhard C. Laubenbacher and Linda H. Shapiro}, title = {The innate immune response to ischemic injury: a multiscale modeling perspective}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {50:1--50:13}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0580-z}, doi = {10.1186/S12918-018-0580-Z}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/DimitrovaCLS18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/FangMMDSKSSP18, author = {Xin Fang and Jonathan M. Monk and Nathan Mih and Bin Du and Anand Sastry and Erol S. Kavvas and Yara Seif and Larry Smarr and Bernhard O. Palsson}, title = {Escherichia coli {B2} strains prevalent in inflammatory bowel disease patients have distinct metabolic capabilities that enable colonization of intestinal mucosa}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {66:1--66:10}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0587-5}, doi = {10.1186/S12918-018-0587-5}, timestamp = {Thu, 29 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/FangMMDSKSSP18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Folch-FortunyTH18, author = {Abel Folch{-}Fortuny and Bas Teusink and Huub C. J. Hoefsloot and Age K. Smilde and Alberto Ferrer}, title = {Dynamic elementary mode modelling of non-steady state flux data}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {71:1--71:15}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0589-3}, doi = {10.1186/S12918-018-0589-3}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Folch-FortunyTH18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/FroysaFB18, author = {H{\aa}vard G. Fr{\o}ysa and Shirin Fallahi and Nello Blaser}, title = {Evaluating model reduction under parameter uncertainty}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {79:1--79:10}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0602-x}, doi = {10.1186/S12918-018-0602-X}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/FroysaFB18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/FuWHLJOZG18, author = {Min Fu and Wenming Wu and Xiafei Hong and Qiuhua Liu and Jialin Jiang and Yaobin Ou and Yupei Zhao and Xinqi Gong}, title = {Hierarchical combinatorial deep learning architecture for pancreas segmentation of medical computed tomography cancer images}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {4}, pages = {119--127}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0572-z}, doi = {10.1186/S12918-018-0572-Z}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/FuWHLJOZG18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GongDMWHWBGG18, author = {Ping Gong and Keri B. Donohue and Anne M. Mayo and Yuping Wang and Huixiao Hong and Mitchell S. Wilbanks and Natalie D. Barker and Xin Guan and Kurt A. Gust}, title = {Comparative toxicogenomics of three insensitive munitions constituents 2, 4-dinitroanisole, nitroguanidine and nitrotriazolone in the soil nematode Caenorhabditis elegans}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {7}, pages = {31--46}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0636-0}, doi = {10.1186/S12918-018-0636-0}, timestamp = {Mon, 03 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/GongDMWHWBGG18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Gonzalez-Menendez18, author = {V{\'{\i}}ctor Gonz{\'{a}}lez{-}Men{\'{e}}ndez and Germ{\'{a}}n Mart{\'{\i}}nez and Rachel Serrano and Francisca Mu{\~{n}}oz and Jes{\'{u}}s Mart{\'{\i}}n and Olga Genilloud and Jos{\'{e}} R. Tormo}, title = {Ultraviolet {(IUV)} and mass spectrometry {(IMS)} imaging for the deconvolution of microbial interactions}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {5}, pages = {91--97}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0617-3}, doi = {10.1186/S12918-018-0617-3}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Gonzalez-Menendez18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GuoLHWYYFJD18, author = {Mengjie Guo and Sicheng Lu and Hongming Huang and Yaohui Wang and Mary Qu Yang and Ye Yang and Zhimin Fan and Bin Jiang and Youping Deng}, title = {Increased {AURKA} promotes cell proliferation and predicts poor prognosis in bladder cancer}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {7}, pages = {11--17}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0634-2}, doi = {10.1186/S12918-018-0634-2}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GuoLHWYYFJD18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GuyeuxAACS18, author = {Christophe Guyeux and Bashar Al{-}Nuaimi and Bassam AlKindy and Jean{-}Fran{\c{c}}ois Couchot and Michel Salomon}, title = {On the reconstruction of the ancestral bacterial genomes in genus Mycobacterium and Brucella}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {5}, pages = {99--121}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0618-2}, doi = {10.1186/S12918-018-0618-2}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GuyeuxAACS18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GuzmanOHPCCMPF18, author = {Gabriela I. Guzm{\'{a}}n and Connor A. Olson and Ying Hefner and Patrick V. Phaneuf and Edward Catoiu and Lais B. Crepaldi and Lucas Goldschmidt Micas and Bernhard O. Palsson and Adam M. Feist}, title = {Reframing gene essentiality in terms of adaptive flexibility}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {143:1--143:20}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0653-z}, doi = {10.1186/S12918-018-0653-Z}, timestamp = {Mon, 03 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/GuzmanOHPCCMPF18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Hall-SwanCNC18a, title = {Retraction Note: detangling {PPI} networks to uncover functionally meaningful clusters}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {113:1}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0641-3}, doi = {10.1186/S12918-018-0641-3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Hall-SwanCNC18a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HaridasBMMS18, author = {Parvathi Haridas and Alexander P. Browning and Jacqui A. McGovern and D. L. Sean McElwain and Matthew J. Simpson}, title = {Three-dimensional experiments and individual based simulations show that cell proliferation drives melanoma nest formation in human skin tissue}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {34:1--34:15}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0559-9}, doi = {10.1186/S12918-018-0559-9}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HaridasBMMS18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HeJDZ18, author = {Wenying He and Cangzhi Jia and Yucong Duan and Quan Zou}, title = {70ProPred: a predictor for discovering sigma70 promoters based on combining multiple features}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {4}, pages = {99--107}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0570-1}, doi = {10.1186/S12918-018-0570-1}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HeJDZ18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HeLCYLYG18, author = {Guannan He and Yanchun Liang and Yan Chen and William Yang and Jun S. Liu and Mary Qu Yang and Renchu Guan}, title = {A hotspots analysis-relation discovery representation model for revealing diabetes mellitus and obesity}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {7}, pages = {75--85}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0640-4}, doi = {10.1186/S12918-018-0640-4}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HeLCYLYG18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Hernansaiz-Ballesteros18, author = {Rosa D. Hernansaiz{-}Ballesteros and Luca Cardelli and Attila Csik{\'{a}}sz{-}Nagy}, title = {Single molecules can operate as primitive biological sensors, switches and oscillators}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {70:1--70:14}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0596-4}, doi = {10.1186/S12918-018-0596-4}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/Hernansaiz-Ballesteros18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HidalgoEAG18, author = {Jos{\'{e}} F. Hidalgo and Jose A. Egea and Francisco De As{\'{\i}}s Guil Asensio and Jos{\'{e}} M. Garc{\'{\i}}a}, title = {Improving the EFMs quality by augmenting their representativeness in {LP} methods}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {5}, pages = {123--131}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0619-1}, doi = {10.1186/S12918-018-0619-1}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HidalgoEAG18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HongPKCMKJY18, author = {Yourae Hong and Choa Park and Nayoung Kim and Juyeon Cho and Sung Ung Moon and Jongmin Kim and Euna Jeong and Sukjoon Yoon}, title = {QSurface: fast identification of surface expression markers in cancers}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {{S-2}}, pages = {1--8}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0541-6}, doi = {10.1186/S12918-018-0541-6}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HongPKCMKJY18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HuGZS18, author = {Jialu Hu and Yiqun Gao and Yan Zheng and Xuequn Shang}, title = {KF-finder: identification of key factors from host-microbial networks in cervical cancer}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {4}, pages = {41--48}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0566-x}, doi = {10.1186/S12918-018-0566-X}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/HuGZS18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HuZYGYZHSYYMCDH18, author = {Ling Hu and Rong Zhang and Qiong Yuan and Yinping Gao and Mary Qu Yang and Chunxiang Zhang and Jiankun Huang and Yufei Sun and William Yang and Jack Y. Yang and Zhen{-}li Min and Jing Cheng and Youping Deng and Xiamin Hu}, title = {The emerging role of microRNA-4487/6845-3p in Alzheimer's disease pathologies is induced by A{\(\beta\)}25-35 triggered in {SH-SY5Y} cell}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {7}, pages = {119:1--119:10}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0633-3}, doi = {10.1186/S12918-018-0633-3}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HuZYGYZHSYYMCDH18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HuangJFLOL18, author = {Bin Huang and Dongya Jia and Jingchen Feng and Herbert Levine and Jos{\'{e}} N. Onuchic and Mingyang Lu}, title = {{RACIPE:} a computational tool for modeling gene regulatory circuits using randomization}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {74:1--74:12}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0594-6}, doi = {10.1186/S12918-018-0594-6}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HuangJFLOL18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HuangLLTY18, author = {Sing{-}Han Huang and Yu{-}Shu Lo and Yong{-}Chun Luo and Yu{-}Yao Tseng and Jinn{-}Moon Yang}, title = {A homologous mapping method for three-dimensional reconstruction of protein networks reveals disease-associated mutations}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {{S-2}}, pages = {79--91}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0537-2}, doi = {10.1186/S12918-018-0537-2}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/HuangLLTY18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HungHPHTWC18, author = {Kuo{-}Sheng Hung and Chung{-}Chi Hsiao and Tun{-}Wen Pai and Chin{-}Hwa Hu and Wen{-}Shyong Tzou and Wen{-}Der Wang and Yet{-}Ran Chen}, title = {Functional enrichment analysis based on long noncoding {RNA} associations}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {4}, pages = {109--118}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0571-0}, doi = {10.1186/S12918-018-0571-0}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HungHPHTWC18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/JeonKPLK18, author = {Minji Jeon and Sunkyu Kim and Sungjoon Park and Heewon Lee and Jaewoo Kang}, title = {In silico drug combination discovery for personalized cancer therapy}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {{S-2}}, pages = {59--67}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0546-1}, doi = {10.1186/S12918-018-0546-1}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/JeonKPLK18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/JiaoLW18, author = {Jianfeng Jiao and Min Luo and Ruiqi Wang}, title = {Feedback regulation in a stem cell model with acute myeloid leukaemia}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {4}, pages = {75--83}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0561-2}, doi = {10.1186/S12918-018-0561-2}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/JiaoLW18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/JungKBYL18, author = {Jinmyung Jung and Mijin Kwon and Sunghwa Bae and Soorin Yim and Doheon Lee}, title = {Petri net-based prediction of therapeutic targets that recover abnormally phosphorylated proteins in muscle atrophy}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {26:1--26:11}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0555-0}, doi = {10.1186/S12918-018-0555-0}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/JungKBYL18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/JungKKCKJ18, author = {Inuk Jung and Hyejin Kang and Jang Uk Kim and Hyeonsook Chang and Sun Kim and Woosuk Jung}, title = {The mRNA and miRNA transcriptomic landscape of Panax ginseng under the high ambient temperature}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {{S-2}}, pages = {117--130}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0548-z}, doi = {10.1186/S12918-018-0548-Z}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/JungKKCKJ18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KarpWL18, author = {Peter D. Karp and Daniel S. Weaver and Mario Latendresse}, title = {How accurate is automated gap filling of metabolic models?}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {73:1--73:11}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0593-7}, doi = {10.1186/S12918-018-0593-7}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KarpWL18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KavvasSYNPGGPM18, author = {Erol S. Kavvas and Yara Seif and James T. Yurkovich and Charles J. Norsigian and Saugat Poudel and William W. Greenwald and Sankha Ghatak and Bernhard O. Palsson and Jonathan M. Monk}, title = {Updated and standardized genome-scale reconstruction of Mycobacterium tuberculosis H37Rv, iEK1011, simulates flux states indicative of physiological conditions}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {25:1--25:15}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0557-y}, doi = {10.1186/S12918-018-0557-Y}, timestamp = {Mon, 26 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KavvasSYNPGGPM18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KhanAJLKCW18, author = {Abbas Khan and Arif Ali and Muhammad Junaid and Chang Liu and Aman Chandra Kaushik and William C. S. Cho and Dong{-}Qing Wei}, title = {Identification of novel drug targets for diamond-blackfan anemia based on {RPS19} gene mutation using protein-protein interaction network}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {4}, pages = {5--16}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0563-0}, doi = {10.1186/S12918-018-0563-0}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KhanAJLKCW18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KramerJZ18, author = {Frank Kramer and Steffen Just and Tanja Zeller}, title = {New perspectives: systems medicine in cardiovascular disease}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {57:1--57:13}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0579-5}, doi = {10.1186/S12918-018-0579-5}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KramerJZ18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KremlingGRJ18, author = {Andreas Kremling and Johannes Geiselmann and Delphine Ropers and Hidde de Jong}, title = {An ensemble of mathematical models showing diauxic growth behaviour}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {82:1--82:16}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0604-8}, doi = {10.1186/S12918-018-0604-8}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KremlingGRJ18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KwonLYP18, author = {Min{-}Seok Kwon and Sangseob Leem and Joon Yoon and Taesung Park}, title = {GxGrare: gene-gene interaction analysis method for rare variants from high-throughput sequencing data}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {{S-2}}, pages = {21--31}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0543-4}, doi = {10.1186/S12918-018-0543-4}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KwonLYP18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LegeayARD18, author = {Marc Legeay and S{\'{e}}bastien Aubourg and Jean{-}Pierre Renou and B{\'{e}}atrice Duval}, title = {Large scale study of anti-sense regulation by differential network analysis}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {5}, pages = {27--41}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0613-7}, doi = {10.1186/S12918-018-0613-7}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LegeayARD18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LeiFWC18, author = {Xiujuan Lei and Ming Fang and Fang{-}Xiang Wu and Luonan Chen}, title = {Improved flower pollination algorithm for identifying essential proteins}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {4}, pages = {129--140}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0573-y}, doi = {10.1186/S12918-018-0573-Y}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LeiFWC18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiHB18, author = {Limin Li and Xiao He and Karsten M. Borgwardt}, title = {Multi-target drug repositioning by bipartite block-wise sparse multi-task learning}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {4}, pages = {85--97}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0569-7}, doi = {10.1186/S12918-018-0569-7}, timestamp = {Wed, 25 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiHB18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiYALCY18, author = {Dan Li and William Yang and Carolyn Arthur and Jun S. Liu and Carolina Cruz{-}Niera and Mary Qu Yang}, title = {Systems biology analysis reveals new insights into invasive lung cancer}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {7}, pages = {47--53}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0637-z}, doi = {10.1186/S12918-018-0637-Z}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiYALCY18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiZN18, author = {Chunhe Li and Lei Zhang and Qing Nie}, title = {Landscape reveals critical network structures for sharpening gene expression boundaries}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {67:1--67:13}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0595-5}, doi = {10.1186/S12918-018-0595-5}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiZN18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiuBAZFCZ18, author = {Guan{-}Sheng Liu and Richard Ballweg and Alan Ashbaugh and Yin Zhang and Joseph Facciolo and Melanie T. Cushion and Tongli Zhang}, title = {A quantitative systems pharmacology {(QSP)} model for Pneumocystis treatment in mice}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {77:1--77:12}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0603-9}, doi = {10.1186/S12918-018-0603-9}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiuBAZFCZ18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiuCHS18, author = {Fei Liu and Siyuan Chen and Monika Heiner and Hengjie Song}, title = {Modeling biological systems with uncertain kinetic data using fuzzy continuous Petri nets}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {4}, pages = {63--74}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0568-8}, doi = {10.1186/S12918-018-0568-8}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiuCHS18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiuCWZL18, author = {Quanya Liu and Peng Chen and Bing Wang and Jun Zhang and Jinyan Li}, title = {Hot spot prediction in protein-protein interactions by an ensemble system}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {9}, pages = {132}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0665-8}, doi = {10.1186/S12918-018-0665-8}, timestamp = {Sat, 12 Mar 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/LiuCWZL18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiuHCLCCL18, author = {Fang{-}Yu Liu and Te{-}Cheng Hsu and Patrick Choong and Min{-}Hsuan Lin and Yung{-}Jen Chuang and Bor{-}Sen Chen and Che Lin}, title = {Uncovering the regeneration strategies of zebrafish organs: a comprehensive systems biology study on heart, cerebellum, fin, and retina regeneration}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {{S-2}}, pages = {33--46}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0544-3}, doi = {10.1186/S12918-018-0544-3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiuHCLCCL18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LuoSA18, author = {Xinyue Luo and Ruijie Song and Murat Acar}, title = {Multi-component gene network design as a survival strategy in diverse environments}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {85:1--85:11}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0609-3}, doi = {10.1186/S12918-018-0609-3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LuoSA18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LyuCJDFL18, author = {Mengxuan Lyu and Jiaxing Chen and Yiqi Jiang and Wei Dong and Zhou Fang and Shuai Cheng Li}, title = {KDiamend: a package for detecting key drivers in a molecular ecological network of disease}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {89--99}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0531-8}, doi = {10.1186/S12918-018-0531-8}, timestamp = {Mon, 03 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/LyuCJDFL18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MartinezRMFLRGB18, author = {Juan A. Mart{\'{\i}}nez and Alberto Rodriguez and Fabian Moreno and Noem{\'{\i}} Flores and Alvaro R. Lara and Octavio T. Ram{\'{\i}}rez and Guillermo Gosset and Francisco Bolivar}, title = {Metabolic modeling and response surface analysis of an Escherichia coli strain engineered for shikimic acid production}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {102:1--102:26}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0632-4}, doi = {10.1186/S12918-018-0632-4}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MartinezRMFLRGB18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/McNallyB18, author = {Colin P. McNally and Elhanan Borenstein}, title = {Metabolic model-based analysis of the emergence of bacterial cross-feeding via extensive gene loss}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {69:1--69:14}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0588-4}, doi = {10.1186/S12918-018-0588-4}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/McNallyB18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MessinaFPRU18, author = {Antonio Messina and Antonino Fiannaca and Laura La Paglia and Massimo La Rosa and Alfonso Urso}, title = {BioGraph: a web application and a graph database for querying and analyzing bioinformatics resources}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {5}, pages = {75--89}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0616-4}, doi = {10.1186/S12918-018-0616-4}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MessinaFPRU18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MeulderLBMCABSP18, author = {Bertrand De Meulder and Diane Lefaudeux and Aruna T. Bansal and Alexander Mazein and Amphun Chaiboonchoe and Hassan Ahmed and Irina Balaur and Mansoor A. S. Saqi and Johann Pellet and St{\'{e}}phane Ballereau and Nathana{\"{e}}l Lemonnier and Kai Sun and Ioannis Pandis and Xian Yang and Manohara Batuwitage and Kosmas Kretsos and Jonathan van Eyll and Alun Bedding and Timothy Davison and Paul Dodson and Christopher Larminie and Anthony D. Postle and Julie Corfield and Ratko Djukanovic and Kian Fan Chung and Ian M. Adcock and Yike Guo and Peter J. Sterk and Alexander Manta and Anthony Rowe and Fr{\'{e}}d{\'{e}}ric Baribaud and Charles Auffray}, title = {A computational framework for complex disease stratification from multiple large-scale datasets}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {60:1--60:23}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0556-z}, doi = {10.1186/S12918-018-0556-Z}, timestamp = {Mon, 22 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MeulderLBMCABSP18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MiannayMMG18, author = {Bertrand Miannay and St{\'{e}}phane Minvielle and Florence Magrangeas and Carito Guziolowski}, title = {Constraints on signaling network logic reveal functional subgraphs on Multiple Myeloma {OMIC} data}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {3}, pages = {25--37}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0551-4}, doi = {10.1186/S12918-018-0551-4}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MiannayMMG18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MishraLLKKL18, author = {Pranjul Mishra and Na{-}Rae Lee and Meiyappan Lakshmanan and Minsuk Kim and Byung{-}Gee Kim and Dong{-}Yup Lee}, title = {Genome-scale model-driven strain design for dicarboxylic acid production in Yarrowia lipolytica}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {{S-2}}, pages = {9--20}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0542-5}, doi = {10.1186/S12918-018-0542-5}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MishraLLKKL18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MoriMYYK18, author = {Hiroshi Mori and Takayuki Maruyama and Masahiro Yano and Takuji Yamada and Ken Kurokawa}, title = {{VITCOMIC2:} visualization tool for the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {{S-2}}, pages = {47--58}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0545-2}, doi = {10.1186/S12918-018-0545-2}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MoriMYYK18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MoriNHAN18, author = {Takuya Mori and Hayliang Ngouv and Morihiro Hayashida and Tatsuya Akutsu and Jose C. Nacher}, title = {ncRNA-disease association prediction based on sequence information and tripartite network}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {41--51}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0527-4}, doi = {10.1186/S12918-018-0527-4}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MoriNHAN18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MukherjeeHBK18, author = {Kingshuk Mukherjee and Md Mahmudul Hasan and Christina Boucher and Tamer Kahveci}, title = {Counting motifs in dynamic networks}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {1--12}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0533-6}, doi = {10.1186/S12918-018-0533-6}, timestamp = {Mon, 10 Jun 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MukherjeeHBK18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/NeumannWRMR18, author = {G{\"{u}}nter Neumann and Rebecca Wall and Ignacio Rangel and Tatiana M. Marques and Dirk Repsilber}, title = {Qualitative modelling of the interplay of inflammatory status and butyrate in the human gut: a hypotheses about robust bi-stability}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {144:1--144:11}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0667-6}, doi = {10.1186/S12918-018-0667-6}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/NeumannWRMR18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/OlneyNVSH18, author = {Kimberly C. Olney and David B. Nyer and Daniel A. Vargas and Melissa A. Wilson Sayres and Karmella A. Haynes}, title = {The synthetic histone-binding regulator protein PcTF activates interferon genes in breast cancer cells}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {83:1--83:17}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0608-4}, doi = {10.1186/S12918-018-0608-4}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/OlneyNVSH18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/OrdinelliBOMB18, author = {Alessandra Ordinelli and Nicola Bernab{\`{o}} and Massimiliano Orsini and Mauro Mattioli and Barbara Barboni}, title = {Putative human sperm Interactome: a networks study}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {52:1--52:10}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0578-6}, doi = {10.1186/S12918-018-0578-6}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/OrdinelliBOMB18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PapacekJP18, author = {Step{\'{a}}n Pap{\'{a}}cek and Jiri Jablonsky and Karel Petera}, title = {Advanced integration of fluid dynamics and photosynthetic reaction kinetics for microalgae culture systems}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {5}, pages = {93:1--93:12}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0611-9}, doi = {10.1186/S12918-018-0611-9}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PapacekJP18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ParkKSHJJJK18, author = {Sungjoon Park and Jung Min Kim and Won{-}Ho Shin and Sung Won Han and Minji Jeon and Hyun Jin Jang and Ik{-}Soon Jang and Jaewoo Kang}, title = {{BTNET} : boosted tree based gene regulatory network inference algorithm using time-course measurement data}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {{S-2}}, pages = {69--77}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0547-0}, doi = {10.1186/S12918-018-0547-0}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/ParkKSHJJJK18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PengZHLLLS18, author = {Jiajie Peng and Xuanshuo Zhang and Weiwei Hui and Junya Lu and Qianqian Li and Shuhui Liu and Xuequn Shang}, title = {Improving the measurement of semantic similarity by combining gene ontology and co-functional network: a random walk based approach}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {{S-2}}, pages = {109--116}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0539-0}, doi = {10.1186/S12918-018-0539-0}, timestamp = {Sun, 25 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PengZHLLLS18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PereiraMVSRC18, author = {Bruno Pereira and Joana Miguel and Paulo Vila{\c{c}}a and Sim{\~{a}}o Soares and Isabel Rocha and S{\'{o}}nia Carneiro}, title = {Reconstruction of a genome-scale metabolic model for Actinobacillus succinogenes 130Z}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {61:1--61:12}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0585-7}, doi = {10.1186/S12918-018-0585-7}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PereiraMVSRC18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PrestonWRSEF18, author = {Claudia C. Preston and Saranya Wyles and Santiago Reyes and Emily C. Storm and Bruce W. Eckloff and Randolph Faustino}, title = {{NUP155} insufficiency recalibrates a pluripotent transcriptome with network remodeling of a cardiogenic signaling module}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {62:1--62:13}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0590-x}, doi = {10.1186/S12918-018-0590-X}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PrestonWRSEF18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/QiuJCC18, author = {Yushan Qiu and Hao Jiang and Wai{-}Ki Ching and Xiaoqing Cheng}, title = {Discovery of Boolean metabolic networks: integer linear programming based approach}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {53--60}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0528-3}, doi = {10.1186/S12918-018-0528-3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/QiuJCC18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/RanjanCZ18, author = {Bobby Ranjan and Ket Hing Chong and Jie Zheng}, title = {Composite mathematical modeling of calcium signaling behind neuronal cell death in Alzheimer's disease}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {61--74}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0529-2}, doi = {10.1186/S12918-018-0529-2}, timestamp = {Thu, 02 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/RanjanCZ18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/RossBWC18, author = {Brian C. Ross and Mayla Boguslav and Holly Weeks and James C. Costello}, title = {Simulating heterogeneous populations using Boolean models}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {64:1--64:11}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0591-9}, doi = {10.1186/S12918-018-0591-9}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/RossBWC18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/RowePK18, author = {Elliot Rowe and Bernhard O. Palsson and Zachary A. King}, title = {Escher-FBA: a web application for interactive flux balance analysis}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {84:1--84:7}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0607-5}, doi = {10.1186/S12918-018-0607-5}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/RowePK18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/RowlandWWGM18, author = {Michael A. Rowland and Hannah Wear and Karen H. Watanabe and Kurt A. Gust and Michael L. Mayo}, title = {Statistical relationship between metabolic decomposition and chemical uptake predicts bioconcentration factor data for diverse chemical exposures}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {81:1--81:12}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0601-y}, doi = {10.1186/S12918-018-0601-Y}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/RowlandWWGM18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/RucciGBGNP18, author = {Enzo Rucci and Carlos Garc{\'{\i}}a and Guillermo Botella and Armando De Giusti and Marcelo R. Naiouf and Manuel Prieto}, title = {{SWIFOLD:} Smith-Waterman implementation on {FPGA} with OpenCL for long {DNA} sequences}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {5}, pages = {43--53}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0614-6}, doi = {10.1186/S12918-018-0614-6}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/RucciGBGNP18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Sadre-MarandiDR18, author = {Farrah Sadre{-}Marandi and Thabat Dahdoul and Michael C. Reed and H. Frederik Nijhout}, title = {Sex differences in hepatic one-carbon metabolism}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {89:1--89:13}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0621-7}, doi = {10.1186/S12918-018-0621-7}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Sadre-MarandiDR18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SaeedABPSPHA18, author = {Muhammad Tariq Saeed and Jamil Ahmad and Jan Baumbach and Josch Pauling and Aamir Shafi and Rehan Zafar Paracha and Asad Hayat and Amjad Ali}, title = {Parameter estimation of qualitative biological regulatory networks on high performance computing hardware}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {146:1--146:15}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0670-y}, doi = {10.1186/S12918-018-0670-Y}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SaeedABPSPHA18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SagarLSV18, author = {Adithya Sagar and Rachel LeCover and Christine Ann Shoemaker and Jeffrey D. Varner}, title = {Dynamic Optimization with Particle Swarms {(DOPS):} a meta-heuristic for parameter estimation in biochemical models}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {87:1--87:15}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0610-x}, doi = {10.1186/S12918-018-0610-X}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SagarLSV18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ScharmGTBSWW18, author = {Martin Scharm and Tom Gebhardt and Vasundra Tour{\'{e}} and Andrea Bagnacani and Ali Salehzadeh{-}Yazdi and Olaf Wolkenhauer and Dagmar Waltemath}, title = {Evolution of computational models in BioModels Database and the Physiome Model Repository}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {53:1--53:10}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0553-2}, doi = {10.1186/S12918-018-0553-2}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ScharmGTBSWW18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SedghamizMCWB18, author = {Hooman Sedghamiz and Matthew C. Morris and Travis J. A. Craddock and L. Darrell Whitley and Gordon Broderick}, title = {High-fidelity discrete modeling of the {HPA} axis: a study of regulatory plasticity in biology}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {76:1--76:16}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0599-1}, doi = {10.1186/S12918-018-0599-1}, timestamp = {Thu, 12 Jan 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/SedghamizMCWB18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ShahenGSETZWBFZ18, author = {Mohamed Shahen and Zihu Guo and Akhtar Hussain Shar and Reham Ebaid and Qin Tao and Wenjuan Zhang and Ziyin Wu and Yaofei Bai and Yingxue Fu and Chunli Zheng and He Wang and Piar Ali Shar and Jianling Liu and Zhenzhong Wang and Wei Xiao and Yonghua Wang}, title = {Dengue virus causes changes of MicroRNA-genes regulatory network revealing potential targets for antiviral drugs}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {2:1--2:13}, year = {2018}, url = {https://doi.org/10.1186/s12918-017-0518-x}, doi = {10.1186/S12918-017-0518-X}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/ShahenGSETZWBFZ18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ShahenGSETZWBFZ18a, author = {Mohamed Shahen and Zihu Guo and Akhtar Hussain Shar and Reham Ebaid and Qin Tao and Wenjuan Zhang and Ziyin Wu and Yaofei Bai and Yingxue Fu and Chunli Zheng and He Wang and Piar Ali Shar and Jianling Liu and Zhenzhong Wang and Wei Xiao and Yonghua Wang}, title = {Correction to: dengue virus causes changes of MicroRNA-genes regulatory network revealing potential targets for antiviral drugs}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {21:1}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0536-3}, doi = {10.1186/S12918-018-0536-3}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/ShahenGSETZWBFZ18a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ShenWSZCQWL18, author = {Fangzhou Shen and Xueting Wu and Luoxi Shi and Hang Zhang and Yangmin Chen and Xiaoquan Qi and Zhuo Wang and Xuan Li}, title = {Transcriptomic and metabolic flux analyses reveal shift of metabolic patterns during rice grain development}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {4}, pages = {141--156}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0574-x}, doi = {10.1186/S12918-018-0574-X}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ShenWSZCQWL18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SmithRSF18, author = {Robert W. Smith and Rik P. van Rosmalen and V{\'{\i}}tor A. P. Martins dos Santos and Christian Fleck}, title = {DMPy: a Python package for automated mathematical model construction of large-scale metabolic systems}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {72:1--72:16}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0584-8}, doi = {10.1186/S12918-018-0584-8}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SmithRSF18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SongF18, author = {Min Song and Stacey D. Finley}, title = {Mechanistic insight into activation of {MAPK} signaling by pro-angiogenic factors}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {145:1--145:17}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0668-5}, doi = {10.1186/S12918-018-0668-5}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SongF18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/StromeHMZBM18, author = {Bob Strome and Ian Shenyen Hsu and Mitchell Li Cheong Man and Taraneh Zarin and Alex N. Nguyen Ba and Alan M. Moses}, title = {Short linear motifs in intrinsically disordered regions modulate {HOG} signaling capacity}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {75:1--75:13}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0597-3}, doi = {10.1186/S12918-018-0597-3}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/StromeHMZBM18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TeraguchiK18, author = {Shunsuke Teraguchi and Yutaro Kumagai}, title = {Estimation of diffusion constants from single molecular measurement without explicit tracking}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {25--39}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0526-5}, doi = {10.1186/S12918-018-0526-5}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/TeraguchiK18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ThomasS18, author = {Marcus Thomas and Russell Schwartz}, title = {A method for efficient Bayesian optimization of self-assembly systems from scattering data}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {65:1--65:17}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0592-8}, doi = {10.1186/S12918-018-0592-8}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ThomasS18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TianTCG18, author = {Zhen Tian and Zhixia Teng and Shuang Cheng and Maozu Guo}, title = {Computational drug repositioning using meta-path-based semantic network analysis}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {9}, pages = {134}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0658-7}, doi = {10.1186/S12918-018-0658-7}, timestamp = {Wed, 11 Nov 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/TianTCG18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/UrdaABFVCJ18, author = {Daniel Urda and Francisco Arag{\'{o}}n and Roc{\'{\i}}o Bautista and Leonardo Franco and Francisco J. Veredas and Manuel Gonzalo Claros and Jos{\'{e}} Manuel Jerez}, title = {{BLASSO:} integration of biological knowledge into a regularized linear model}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {5}, pages = {13--26}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0612-8}, doi = {10.1186/S12918-018-0612-8}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/UrdaABFVCJ18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ValdesGRDYGRC18, author = {Mar{\'{\i}}a Gabriela Vald{\'{e}}s and Iv{\'{a}}n Galv{\'{a}}n{-}Femen{\'{\i}}a and Vicent J. Ribas Ripoll and Xavier Duran and Jun Yokota and Ricard Gavald{\`{a}} and Xavier Rafael{-}Palou and Rafael de Cid}, title = {Pipeline design to identify key features and classify the chemotherapy response on lung cancer patients using large-scale genetic data}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {5}, pages = {55--74}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0615-5}, doi = {10.1186/S12918-018-0615-5}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/ValdesGRDYGRC18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Vazquez-Hernandez18, author = {Carlos Vazquez{-}Hernandez and Antonio Loza and Esteban Peguero{-}Sanchez and Lorenzo Segovia and Rosa{-}Mar{\'{\i}}a Guti{\'{e}}rrez{-}R{\'{\i}}os}, title = {Identification of reaction organization patterns that naturally cluster enzymatic transformations}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {63:1--63:17}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0583-9}, doi = {10.1186/S12918-018-0583-9}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Vazquez-Hernandez18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/VernonLGRTL18, author = {Ian R. Vernon and Junli Liu and Michael Goldstein and James Rowe and Jen Topping and Keith Lindsey}, title = {Bayesian uncertainty analysis for complex systems biology models: emulation, global parameter searches and evaluation of gene functions}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {1:1--1:29}, year = {2018}, url = {https://doi.org/10.1186/s12918-017-0484-3}, doi = {10.1186/S12918-017-0484-3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/VernonLGRTL18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WangAMB18, author = {Zhang Wang and Seda Arat and Michal Magid{-}Slav and James R. Brown}, title = {Meta-analysis of human gene expression in response to Mycobacterium tuberculosis infection reveals potential therapeutic targets}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {3:1--3:18}, year = {2018}, url = {https://doi.org/10.1186/s12918-017-0524-z}, doi = {10.1186/S12918-017-0524-Z}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WangAMB18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WangYLJCC18, author = {Yan{-}Bin Wang and Zhu{-}Hong You and Xiao Li and Tong{-}Hai Jiang and Li Cheng and Zhan{-}Heng Chen}, title = {Prediction of protein self-interactions using stacked long short-term memory from protein sequences information}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {8}, pages = {129}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0647-x}, doi = {10.1186/S12918-018-0647-X}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/WangYLJCC18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WangZC18, author = {Yong Wang and Xiang{-}Sun Zhang and Luonan Chen}, title = {Integrating data- and model-driven strategies in systems biology}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {4}, pages = {38:1--38:3}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0562-1}, doi = {10.1186/S12918-018-0562-1}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WangZC18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WoodhousePWGF18, author = {Steven Woodhouse and Nir Piterman and Christoph M. Wintersteiger and Berthold G{\"{o}}ttgens and Jasmin Fisher}, title = {{SCNS:} a graphical tool for reconstructing executable regulatory networks from single-cell genomic data}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {59:1--59:7}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0581-y}, doi = {10.1186/S12918-018-0581-Y}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WoodhousePWGF18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YangWYZCG18, author = {Mary Qu Yang and Sherman Morton Weissman and William Yang and Jialing Zhang and Allon Canaan and Renchu Guan}, title = {{MISC:} missing imputation for single-cell {RNA} sequencing data}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {7}, pages = {55--63}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0638-y}, doi = {10.1186/S12918-018-0638-Y}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/YangWYZCG18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YangWZXZCW18, author = {Fang Yang and Meng Wang and Baoyun Zhang and Wei Xiang and Ke Zhang and Mingxin Chu and Pingqing Wang}, title = {Identification of new progestogen-associated networks in mammalian ovulation using bioinformatics}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {36:1--36:12}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0577-7}, doi = {10.1186/S12918-018-0577-7}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/YangWZXZCW18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YangXMKGZ18, author = {Bei Yang and Yaohui Xu and Andrew S. Maxwell and Wonryull Koh and Ping Gong and Chaoyang Zhang}, title = {{MICRAT:} a novel algorithm for inferring gene regulatory networks using time series gene expression data}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {7}, pages = {19--29}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0635-1}, doi = {10.1186/S12918-018-0635-1}, timestamp = {Tue, 24 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/YangXMKGZ18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YimYJL18, author = {Soorin Yim and Hasun Yu and Dongjin Jang and Doheon Lee}, title = {Annotating activation/inhibition relationships to protein-protein interactions using gene ontology relations}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {111--122}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0535-4}, doi = {10.1186/S12918-018-0535-4}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/YimYJL18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YuMSHCDY18, author = {Hui Yu and Kui{-}Tao Mao and Jian{-}Yu Shi and Hua Huang and Zhi Chen and Kai Dong and Siu{-}Ming Yiu}, title = {Predicting and understanding comprehensive drug-drug interactions via semi-nonnegative matrix factorization}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {101--110}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0532-7}, doi = {10.1186/S12918-018-0532-7}, timestamp = {Thu, 27 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/YuMSHCDY18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YuNTZ18, author = {Peijia Yu and Qing Nie and Chao Tang and Lei Zhang}, title = {Nanog induced intermediate state in regulating stem cell differentiation and reprogramming}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {22:1--22:13}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0552-3}, doi = {10.1186/S12918-018-0552-3}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/YuNTZ18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YurkovichBSP18, author = {James T. Yurkovich and Aarash Bordbar and {\'{O}}lafur E. Sigurj{\'{o}}nsson and Bernhard O. Palsson}, title = {Systems biology as an emerging paradigm in transfusion medicine}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {31:1--31:9}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0558-x}, doi = {10.1186/S12918-018-0558-X}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/YurkovichBSP18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZecenaTWFPLSSBT18, author = {Helma Zecena and Daniel Tveit and Zi Wang and Ahmed Farhat and Parvita Panchal and Jing Liu and Simar J. Singh and Amandeep Sanghera and Ajay Bainiwal and Shuan Y. Teo and Frank L. Meyskens Jr and Feng Liu{-}Smith and Fabian V. Filipp}, title = {Systems biology analysis of mitogen activated protein kinase inhibitor resistance in malignant melanoma}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {33:1--33:12}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0554-1}, doi = {10.1186/S12918-018-0554-1}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ZecenaTWFPLSSBT18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Zhang18, author = {Shuqin Zhang}, title = {Comparisons of gene coexpression network modules in breast cancer and ovarian cancer}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {75--87}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0530-9}, doi = {10.1186/S12918-018-0530-9}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Zhang18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Zhang18a, author = {Qingyang Zhang}, title = {A powerful nonparametric method for detecting differentially co-expressed genes: distance correlation screening and edge-count test}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {58:1--58:16}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0582-x}, doi = {10.1186/S12918-018-0582-X}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Zhang18a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZhangGZ18, author = {Ke Zhang and Wei Geng and Shuqin Zhang}, title = {Network-based logistic regression integration method for biomarker identification}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {9}, pages = {135}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0657-8}, doi = {10.1186/S12918-018-0657-8}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ZhangGZ18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZhangSTXG18, author = {Zehua Zhang and Jian Song and Jijun Tang and Xinying Xu and Fei Guo}, title = {Detecting complexes from edge-weighted {PPI} networks via genes expression analysis}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {4}, pages = {29--40}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0565-y}, doi = {10.1186/S12918-018-0565-Y}, timestamp = {Tue, 12 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ZhangSTXG18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZhangYY18, author = {Bo Zhang and Hua Ye and Aidong Yang}, title = {Mathematical modelling of interacting mechanisms for hypoxia mediated cell cycle commitment for mesenchymal stromal cells}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {1}, pages = {35:1--35:18}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0560-3}, doi = {10.1186/S12918-018-0560-3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ZhangYY18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZouAWY18, author = {Xudong Zou and Ke An and Yun{-}Dong Wu and Zhi{-}Qiang Ye}, title = {{PPI} network analyses of human {WD40} protein family systematically reveal their tendency to assemble complexes and facilitate the complex predictions}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {4}, pages = {49--62}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0567-9}, doi = {10.1186/S12918-018-0567-9}, timestamp = {Thu, 19 Nov 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/ZouAWY18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Hall-SwanCNC18, title = {Detangling {PPI} networks to uncover functionally meaningful clusters}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {3}, pages = {11--23}, year = {2018}, note = {Withdrawn.}, url = {https://doi.org/10.1186/s12918-018-0550-5}, doi = {10.1186/S12918-018-0550-5}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Hall-SwanCNC18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Abd-RabboM17, author = {Diala Abd{-}Rabbo and Stephen W. Michnick}, title = {Delineating functional principles of the bow tie structure of a kinase-phosphatase network in the budding yeast}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {38:1--38:14}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0418-0}, doi = {10.1186/S12918-017-0418-0}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Abd-RabboM17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/AguileraZK17, author = {Luis U. Aguilera and Christoph Zimmer and Ursula Kummer}, title = {A new efficient approach to fit stochastic models on the basis of high-throughput experimental data using a model of {IRF7} gene expression as case study}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {26:1--26:14}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0406-4}, doi = {10.1186/S12918-017-0406-4}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/AguileraZK17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/AmsteinASFDK17, author = {Leonie Amstein and J{\"{o}}rg Ackermann and Jennifer Scheidel and Simone Fulda and Ivan Dikic and Ina Koch}, title = {Manatee invariants reveal functional pathways in signaling networks}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {72:1--72:11}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0448-7}, doi = {10.1186/S12918-017-0448-7}, timestamp = {Mon, 03 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/AmsteinASFDK17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/AquinoHJLHCEHJS17, author = {Patricia Aquino and Brent Honda and Suma Jaini and Anna Lyubetskaya and Krutika Hosur and Joanna G. Chiu and Iriny Ekladious and Dongjian Hu and Lin Jin and Marianna K. Sayeg and Arion Stettner and Julia Wang and Brandon G. Wong and Winnie S. Wong and Stephen L. Alexander and Cong Ba and Seth I. Bensussen and David B. Bernstein and Dana Braff and Susie Cha and Daniel I. Cheng and Jang{-}Hwan Cho and Kenny Chou and James Chuang and Daniel E. Gastler and Daniel J. Grasso and John S. Greifenberger and Chen Guo and Anna K. Hawes and Divya V. Israni and Saloni R. Jain and Jessica Kim and Junyu Lei and Hao Li and David Li and Qian Li and Christopher P. Mancuso and Ning Mao and Salwa F. Masud and Cari L. Meisel and Jing Mi and Christine S. Nykyforchyn and Minhee Park and Hannah M. Peterson and Alfred K. Ramirez and Daniel S. Reynolds and Nae Gyune Rim and Jared C. Saffie and Hang Su and Wendell R. Su and Yaqing Su and Meng Sun and Meghan M. Thommes and Tao Tu and Nitinun Varongchayakul and Tyler E. Wagner and Benjamin H. Weinberg and Rouhui Yang and Anastasia Yaroslavsky and Christine Yoon and Yanyu Zhao and Alicia J. Zollinger and Anne M. Stringer and John W. Foster and Joseph Wade and Sahadaven Raman and Natasha Broude and Wilson W. Wong and James E. Galagan}, title = {Coordinated regulation of acid resistance in Escherichia coli}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {1:1--1:15}, year = {2017}, url = {https://doi.org/10.1186/s12918-016-0376-y}, doi = {10.1186/S12918-016-0376-Y}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/AquinoHJLHCEHJS17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/AsamiKK17, author = {Shun Asami and Daisuke Kiga and Akihiko Konagaya}, title = {Constraint-based perturbation analysis with cluster Newton method: a case study of personalized parameter estimations with irinotecan whole-body physiologically based pharmacokinetic model}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-7}}, pages = {151--162}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0513-2}, doi = {10.1186/S12918-017-0513-2}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/AsamiKK17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/AvramidisA17, author = {Eleftherios Avramidis and Ozgur E. Akman}, title = {Optimisation of an exemplar oculomotor model using multi-objective genetic algorithms executed on a {GPU-CPU} combination}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {40:1--40:23}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0416-2}, doi = {10.1186/S12918-017-0416-2}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/AvramidisA17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Balasubramanian17, author = {Pavithra K. Balasubramanian and Anand Balupuri and Hee{-}Young Kang and Seung Joo Cho}, title = {Receptor-guided 3D-QSAR studies, molecular dynamics simulation and free energy calculations of Btk kinase inhibitors}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-2}}, pages = {6:1--6:11}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0385-5}, doi = {10.1186/S12918-017-0385-5}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Balasubramanian17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BallnusHHGHT17, author = {Benjamin Ballnus and Sabine Hug and Kathrin Hatz and Linus G{\"{o}}rlitz and Jan Hasenauer and Fabian J. Theis}, title = {Comprehensive benchmarking of Markov chain Monte Carlo methods for dynamical systems}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {63:1--63:18}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0433-1}, doi = {10.1186/S12918-017-0433-1}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BallnusHHGHT17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BalomenosTATKM17, author = {Athanasios D. Balomenos and Panagiotis Tsakanikas and Zafiro Aspridou and Anastasia P. Tampakaki and Konstantinos P. Koutsoumanis and Elias S. Manolakos}, title = {Image analysis driven single-cell analytics for systems microbiology}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {43:1--43:21}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0399-z}, doi = {10.1186/S12918-017-0399-Z}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/BalomenosTATKM17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BanerjeePBGPR17, author = {Deepanwita Banerjee and Dharmeshkumar Parmar and Nivedita Bhattacharya and Avinash D. Ghanate and Venkateswarlu Panchagnula and Anu Raghunathan}, title = {A scalable metabolite supplementation strategy against antibiotic resistant pathogen Chromobacterium violaceum induced by {NAD+/NADH+} imbalance}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {51:1--51:20}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0427-z}, doi = {10.1186/S12918-017-0427-Z}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BanerjeePBGPR17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BassenVMBV17, author = {David M. Bassen and Michael Vilkhovoy and Mason Minot and Jonathan T. Butcher and Jeffrey D. Varner}, title = {JuPOETs: a constrained multiobjective optimization approach to estimate biochemical model ensembles in the Julia programming language}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {10:1--10:11}, year = {2017}, url = {https://doi.org/10.1186/s12918-016-0380-2}, doi = {10.1186/S12918-016-0380-2}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BassenVMBV17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BotiaVFGDHLRW17, author = {Juan A. Bot{\'{\i}}a and Jana Vandrovcova and Paola Forabosco and Sebastian Guelfi and Karishma D'Sa and John Hardy and Cathryn M. Lewis and Mina Ryten and Michael E. Weale}, title = {An additional k-means clustering step improves the biological features of {WGCNA} gene co-expression networks}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {47:1--47:16}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0420-6}, doi = {10.1186/S12918-017-0420-6}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BotiaVFGDHLRW17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BottjeKRWLH17, author = {Walter Bottje and Byung{-}Whi Kong and Antonio Reverter and Ashley J. Waardenberg and Kentu Lassiter and Nicholas J. Hudson}, title = {Progesterone signalling in broiler skeletal muscle is associated with divergent feed efficiency}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {29:1--29:16}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0396-2}, doi = {10.1186/S12918-017-0396-2}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BottjeKRWLH17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BourdakouS17, author = {Marilena M. Bourdakou and George M. Spyrou}, title = {Informed walks: whispering hints to gene hunters inside networks' jungle}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {97:1--97:11}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0473-6}, doi = {10.1186/S12918-017-0473-6}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BourdakouS17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChenLH17, author = {Weiqi Chen and Jing Liu and Shan He}, title = {Prior knowledge guided active modules identification: an integrated multi-objective approach}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-2}}, pages = {8:1--8:12}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0388-2}, doi = {10.1186/S12918-017-0388-2}, timestamp = {Thu, 25 Nov 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/ChenLH17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChenLWC17, author = {Minghan Chen and Fei Li and Shuo Wang and Young Cao}, title = {Stochastic modeling and simulation of reaction-diffusion system with Hill function dynamics}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {3}, pages = {21:1--21:11}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0401-9}, doi = {10.1186/S12918-017-0401-9}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChenLWC17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChenardGVCTN17, author = {Thierry Ch{\'{e}}nard and Fr{\'{e}}d{\'{e}}ric Gu{\'{e}}nard and Marie{-}Claude Vohl and Andr{\'{e}} Carpentier and Andr{\'{e}} Tchernof and Rafael J. Najmanovich}, title = {Remodeling adipose tissue through in silico modulation of fat storage for the prevention of type 2 diabetes}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {60:1--60:15}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0438-9}, doi = {10.1186/S12918-017-0438-9}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChenardGVCTN17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChengHWLGZ17, author = {Zhanzhan Cheng and Kai Huang and Yang Wang and Hui Liu and Jihong Guan and Shuigeng Zhou}, title = {Selecting high-quality negative samples for effectively predicting protein-RNA interactions}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-2}}, pages = {9:1--9:11}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0390-8}, doi = {10.1186/S12918-017-0390-8}, timestamp = {Mon, 19 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChengHWLGZ17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChoiPCLH17, author = {Daesik Choi and Byungkyu Park and Hanju Chae and Wook Lee and Kyungsook Han}, title = {Predicting protein-binding regions in {RNA} using nucleotide profiles and compositions}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-2}}, pages = {16:1--16:12}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0386-4}, doi = {10.1186/S12918-017-0386-4}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChoiPCLH17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChuTSR17, author = {Brian K. Chu and Margaret J. Tse and Royce R. Sato and Elizabeth L. Read}, title = {Markov State Models of gene regulatory networks}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {14:1--14:17}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0394-4}, doi = {10.1186/S12918-017-0394-4}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChuTSR17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Cueto-RojasMHPM17, author = {Hugo F. Cueto{-}Rojas and Nicholas Milne and Ward van Helmond and Mervin M. Pieterse and Antonius J. A. van Maris and Jean{-}Marc Daran and Sebastian Aljoscha Wahl}, title = {Membrane potential independent transport of {NH3} in the absence of ammonium permeases in Saccharomyces cerevisiae}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {49:1--49:13}, year = {2017}, url = {https://doi.org/10.1186/s12918-016-0381-1}, doi = {10.1186/S12918-016-0381-1}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Cueto-RojasMHPM17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/DolomanVMF17, author = {Anna Doloman and Honey Varghese and Charles D. Miller and Nicholas S. Flann}, title = {Modeling de novo granulation of anaerobic sludge}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {69:1--69:12}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0443-z}, doi = {10.1186/S12918-017-0443-Z}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/DolomanVMF17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/FuDJWY17, author = {Changhe Fu and Su Deng and Guangxu Jin and Xinxin Wang and Zu{-}Guo Yu}, title = {Bayesian network model for identification of pathways by integrating protein interaction with genetic interaction data}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-4}}, pages = {35--42}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0454-9}, doi = {10.1186/S12918-017-0454-9}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/FuDJWY17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GaborVB17, author = {Attila G{\'{a}}bor and Alejandro Fern{\'{a}}ndez Villaverde and Julio R. Banga}, title = {Parameter identifiability analysis and visualization in large-scale kinetic models of biosystems}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {54:1--54:16}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0428-y}, doi = {10.1186/S12918-017-0428-Y}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GaborVB17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GanLZWJ17, author = {Mingxin Gan and Wenran Li and Wanwen Zeng and Xiaojian Wang and Rui Jiang}, title = {Mimvec: a deep learning approach for analyzing the human phenome}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-4}}, pages = {3--16}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0451-z}, doi = {10.1186/S12918-017-0451-Z}, timestamp = {Sun, 04 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GanLZWJ17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GaoWDZ17, author = {Jie Gao and Kang Wang and Tao Ding and Shanshan Zhu}, title = {Forecasting influenza {A} pandemic outbreak using protein dynamical network biomarkers}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-4}}, pages = {113--119}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0460-y}, doi = {10.1186/S12918-017-0460-Y}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GaoWDZ17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GlatignyGBDM17, author = {Annie Glatigny and Philippe Gambette and Alexa Bourand{-}Plantefol and Genevi{\`{e}}ve Dujardin and Marie{-}H{\'{e}}l{\`{e}}ne Mucchielli{-}Giorgi}, title = {Development of an in silico method for the identification of subcomplexes involved in the biogenesis of multiprotein complexes in Saccharomyces cerevisiae}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {67:1--67:12}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0442-0}, doi = {10.1186/S12918-017-0442-0}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GlatignyGBDM17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GuoCTLWBZ17, author = {Wenbin Guo and Cristiane P. G. Calixto and Nikoleta Tzioutziou and Ping Lin and Robbie Waugh and John W. S. Brown and Runxuan Zhang}, title = {Evaluation and improvement of the regulatory inference for large co-expression networks with limited sample size}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {62:1--62:12}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0440-2}, doi = {10.1186/S12918-017-0440-2}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GuoCTLWBZ17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GuoTWW17, author = {Yuzhen Guo and Fengying Tao and Zikai Wu and Yong Wang}, title = {Hybrid method to solve {HP} model on 3D lattice and to probe protein stability upon amino acid mutations}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-4}}, pages = {99--111}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0459-4}, doi = {10.1186/S12918-017-0459-4}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GuoTWW17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HartungBWK17, author = {Niklas Hartung and Uwe Benary and Jana Wolf and Bente Kofahl}, title = {Paracrine and autocrine regulation of gene expression by Wnt-inhibitor Dickkopf in wild-type and mutant hepatocytes}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {98:1--98:16}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0470-9}, doi = {10.1186/S12918-017-0470-9}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HartungBWK17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HeZRC17, author = {Jing He and Zhou Zhou and Michael Reed and Andrea Califano}, title = {Accelerated parallel algorithm for gene network reverse engineering}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-4}}, pages = {85--97}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0458-5}, doi = {10.1186/S12918-017-0458-5}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HeZRC17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HerajyLRH17, author = {Mostafa Herajy and Fei Liu and Christian Rohr and Monika Heiner}, title = {Snoopy's hybrid simulator: a tool to construct and simulate hybrid biological models}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {71:1--71:16}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0449-6}, doi = {10.1186/S12918-017-0449-6}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HerajyLRH17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HoekM17, author = {Milan J. A. van Hoek and Roeland M. H. Merks}, title = {Emergence of microbial diversity due to cross-feeding interactions in a spatial model of gut microbial metabolism}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {56:1--56:18}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0430-4}, doi = {10.1186/S12918-017-0430-4}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HoekM17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HuangCJCLCLL17, author = {Kai{-}Yao Huang and Tzu{-}Hao Chang and Jhih{-}Hua Jhong and Yu{-}Hsiang Chi and Wen{-}Chi Li and Chien{-}Lung Chan and K. Robert Lai and Tzong{-}Yi Lee}, title = {Identification of natural antimicrobial peptides from bacteria through metagenomic and metatranscriptomic analysis of high-throughput transcriptome data of Taiwanese oolong teas}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-7}}, pages = {29--44}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0503-4}, doi = {10.1186/S12918-017-0503-4}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HuangCJCLCLL17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HuhtinenHLLPS17, author = {Anna Huhtinen and Vesa Hongisto and Asta Laiho and Eliisa L{\"{o}}yttyniemi and Dirk Pijnenburg and Mika Scheinin}, title = {Gene expression profiles and signaling mechanisms in {\(\alpha\)}2B-adrenoceptor-evoked proliferation of vascular smooth muscle cells}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {65:1--65:30}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0439-8}, doi = {10.1186/S12918-017-0439-8}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HuhtinenHLLPS17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/JayasundaraPMJ17, author = {S. D. Pavithra Jayasundara and S. S. N. Perera and Gathsaurie Neelika Malavige and Saroj Jayasinghe}, title = {Mathematical modelling and a systems science approach to describe the role of cytokines in the evolution of severe dengue}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {34:1--34:14}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0415-3}, doi = {10.1186/S12918-017-0415-3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/JayasundaraPMJ17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/JenschTR17, author = {Antje Jensch and Caterina Thomaseth and Nicole Radde}, title = {Sampling-based Bayesian approaches reveal the importance of quasi-bistable behavior in cellular decision processes on the example of the {MAPK} signaling pathway in {PC-12} cell lines}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {11:1--11:15}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0392-6}, doi = {10.1186/S12918-017-0392-6}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/JenschTR17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/JeongY17, author = {Hyundoo Jeong and Byung{-}Jun Yoon}, title = {{SEQUOIA:} significance enhanced network querying through context-sensitive random walk and minimization of network conductance}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {3}, pages = {20:1--20:11}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0404-6}, doi = {10.1186/S12918-017-0404-6}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/JeongY17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/JiWYDMS17, author = {Zhiwei Ji and Bing Wang and Ke Yan and Ligang Dong and Guanmin Meng and Lei Shi}, title = {A linear programming computational framework integrates phosphor-proteomics and prior knowledge to predict drug efficacy}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-7}}, pages = {127:1--127:13}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0501-6}, doi = {10.1186/S12918-017-0501-6}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/JiWYDMS17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/JiangCCHY17, author = {Hao Jiang and Wai{-}Ki Ching and Wai{-}Shun Cheung and Wenpin Hou and Hong Yin}, title = {Hadamard Kernel {SVM} with applications for breast cancer outcome predictions}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-7}}, pages = {163--174}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0514-1}, doi = {10.1186/S12918-017-0514-1}, timestamp = {Sun, 12 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/JiangCCHY17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/JiangCQC17, author = {Hao Jiang and Wai{-}Ki Ching and Yushan Qiu and Xiaoqing Cheng}, title = {Optimal projection method determination by Logdet Divergence and perturbed von-Neumann Divergence}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {6}, pages = {45--61}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0479-0}, doi = {10.1186/S12918-017-0479-0}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/JiangCQC17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KangC17, author = {Jun Hyuk Kang and Kwang{-}Hyun Cho}, title = {A novel interaction perturbation analysis reveals a comprehensive regulatory principle underlying various biochemical oscillators}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {95:1--95:12}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0472-7}, doi = {10.1186/S12918-017-0472-7}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KangC17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KaoWHKHHL17, author = {Hui{-}Ju Kao and Shun{-}Long Weng and Kai{-}Yao Huang and Fergie Joanda Kaunang and Justin Bo{-}Kai Hsu and Chien{-}Hsun Huang and Tzong{-}Yi Lee}, title = {MDD-carb: a combinatorial model for the identification of protein carbonylation sites with substrate motifs}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-7}}, pages = {127--140}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0511-4}, doi = {10.1186/S12918-017-0511-4}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KaoWHKHHL17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KapetisSYGXWSLF17, author = {Dimos Kapetis and Jenny Sassone and Yang Yang and Barbara Galbardi and Markos N. Xenakis and Ronald L. Westra and Radek Szklarczyk and Patrick Lindsey and Catharina G. Faber and Monique Gerrits and Ingemar S. J. Merkies and Sulayman D. Dib{-}Hajj and Massimo Mantegazza and Stephen G. Waxman and Giuseppe Lauria and Michela Taiana and Margherita Marchi and Raffaella Lombardi and Daniele Cazzato and Filippo Martinelli{-}Boneschi and Andrea Zauli and Ferdinando Clarelli and Silvia Santoro and Ignazio Lopez and Angelo Quattrini and Janneke Hoeijmakers and Maurice Sopacua and Bianca de Greef and Hubert J. M. Smeets and Rowida Al Momani and Jo Michel Vanoevelen and Ivo Eijkenboom and Sandrine Cest{\`{e}}le and Oana Chever and Rayaz A. Malik and Mitra Tavakoli and Dan Ziegler}, title = {Network topology of NaV1.7 mutations in sodium channel-related painful disorders}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {28:1--28:16}, year = {2017}, url = {https://doi.org/10.1186/s12918-016-0382-0}, doi = {10.1186/S12918-016-0382-0}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KapetisSYGXWSLF17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KashafAL17, author = {Sara Saheb Kashaf and Claudio Angione and Pietro Li{\`{o}}}, title = {Making life difficult for Clostridium difficile: augmenting the pathogen's metabolic model with transcriptomic and codon usage data for better therapeutic target characterization}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {25:1--25:13}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0395-3}, doi = {10.1186/S12918-017-0395-3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KashafAL17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KhatibiZWTMB17, author = {Shabnam Khatibi and Hong{-}Jian Zhu and John Wagner and Chin Wee Tan and Jonathan H. Manton and Antony W. Burgess}, title = {Mathematical model of TGF-{\(\beta\)}signalling: feedback coupling is consistent with signal switching}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {48:1--48:15}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0421-5}, doi = {10.1186/S12918-017-0421-5}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KhatibiZWTMB17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KimCSC17, author = {Yunseong Kim and Sea Choi and Dongkwan Shin and Kwang{-}Hyun Cho}, title = {Quantitative evaluation and reversion analysis of the attractor landscapes of an intracellular regulatory network for colorectal cancer}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {45:1--45:11}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0424-2}, doi = {10.1186/S12918-017-0424-2}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KimCSC17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KuglerBE17, author = {Philipp K{\"{u}}gler and M. A. K. Bulelzai and Andr{\'{e}} H. Erhardt}, title = {Period doubling cascades of limit cycles in cardiac action potential models as precursors to chaotic early Afterdepolarizations}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {42:1--42:13}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0422-4}, doi = {10.1186/S12918-017-0422-4}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KuglerBE17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KuzmanovskaMMZK17, author = {Irena Kuzmanovska and Andreas Milias{-}Argeitis and Jan Mikelson and Christoph Zechner and Mustafa Khammash}, title = {Parameter inference for stochastic single-cell dynamics from lineage tree data}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {52:1--52:13}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0425-1}, doi = {10.1186/S12918-017-0425-1}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KuzmanovskaMMZK17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LabenaYDZG17, author = {Abraham A. Labena and Yuan{-}Nong Ye and Chuan Dong and Fa{-}Zhan Zhang and Feng{-}Biao Guo}, title = {{SSER:} Species specific essential reactions database}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {50:1--50:8}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0426-0}, doi = {10.1186/S12918-017-0426-0}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LabenaYDZG17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LaiF17, author = {Xiulan Lai and Avner Friedman}, title = {Combination therapy for melanoma with {BRAF/MEK} inhibitor and immune checkpoint inhibitor: a mathematical model}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {70:1--70:18}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0446-9}, doi = {10.1186/S12918-017-0446-9}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LaiF17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LeP17, author = {Duc{-}Hau Le and Van{-}Huy Pham}, title = {{HGPEC:} a Cytoscape app for prediction of novel disease-gene and disease-disease associations and evidence collection based on a random walk on heterogeneous network}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {61:1--61:10}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0437-x}, doi = {10.1186/S12918-017-0437-X}, timestamp = {Mon, 05 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LeP17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiG17, author = {Qi Li and Yongyi Gong}, title = {A geometric method for contour extraction of Drosophila embryos}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {6}, pages = {35--44}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0478-1}, doi = {10.1186/S12918-017-0478-1}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiG17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiSDSLKM17, author = {Biao Li and Amanda Sierra and Juan Jose Deudero and Fatih Semerci and Andrew Laitman and Marek Kimmel and Mirjana Maletic{-}Savatic}, title = {Multitype Bellman-Harris branching model provides biological predictors of early stages of adult hippocampal neurogenesis}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-5}}, pages = {90:1--90:16}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0468-3}, doi = {10.1186/S12918-017-0468-3}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiSDSLKM17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiVNWYT17, author = {Huipeng Li and Lakshmi Venkatraman and Balakrishnan Chakrapani Narmada and Jacob K. White and Hanry Yu and Lisa Tucker{-}Kellogg}, title = {Computational analysis reveals the coupling between bistability and the sign of a feedback loop in a TGF-{\(\beta\)}1 activation model}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-7}}, pages = {91--99}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0508-z}, doi = {10.1186/S12918-017-0508-Z}, timestamp = {Mon, 08 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiVNWYT17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiWCLCLL17, author = {Ru{-}Dong Li and Yin Wang and Hui Cheng and Gang Liu and Tao Cheng and Yunlong Liu and Lei Liu}, title = {System modeling reveals the molecular mechanisms of {HSC} cell cycle alteration mediated by Maff and Egr3 under leukemia}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-5}}, pages = {91:1--91:12}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0467-4}, doi = {10.1186/S12918-017-0467-4}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiWCLCLL17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiWRWFLL17, author = {Jin Li and Yang Wang and Xi Rao and Yue Wang and Weixing Feng and Hong Liang and Yunlong Liu}, title = {Roles of alternative splicing in modulating transcriptional regulation}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-5}}, pages = {89:1--89:12}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0465-6}, doi = {10.1186/S12918-017-0465-6}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiWRWFLL17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiuGJ17, author = {Qiao Liu and Mingxin Gan and Rui Jiang}, title = {A sequence-based method to predict the impact of regulatory variants using random forest}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-2}}, pages = {7:1--7:9}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0389-1}, doi = {10.1186/S12918-017-0389-1}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/LiuGJ17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiuSMM17, author = {Fei Liu and Deshun Sun and Ryutaro Murakami and Hiroshi Matsuno}, title = {Modeling and analysis of the Delta-Notch dependent boundary formation in the Drosophila large intestine}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-4}}, pages = {43--60}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0455-8}, doi = {10.1186/S12918-017-0455-8}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiuSMM17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiuWZGWS17, author = {Jin{-}Xing Liu and Dong{-}Qin Wang and Chun{-}Hou Zheng and Ying{-}Lian Gao and Sha{-}Sha Wu and Junliang Shang}, title = {Identifying drug-pathway association pairs based on L2, 1-integrative penalized matrix decomposition}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {6}, pages = {63--73}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0480-7}, doi = {10.1186/S12918-017-0480-7}, timestamp = {Tue, 25 Jun 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiuWZGWS17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiuWZH17, author = {Qingping Liu and Jiahao Wang and Yan Zhu and Yongqun He}, title = {Ontology-based systematic representation and analysis of traditional Chinese drugs against rheumatism}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-7}}, pages = {113--125}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0510-5}, doi = {10.1186/S12918-017-0510-5}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiuWZH17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiuYLSL17, author = {Xiaoxia Liu and Zhihao Yang and Hongfei Lin and Michael Simmons and Zhiyong Lu}, title = {DIGNiFI: Discovering causative genes for orphan diseases using protein-protein interaction networks}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {3}, pages = {23:1--23:11}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0402-8}, doi = {10.1186/S12918-017-0402-8}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiuYLSL17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LoiraMCRTGGEM17, author = {Nicol{\'{a}}s Loira and Sebasti{\'{a}}n N. Mendoza and Mar{\'{\i}}a Paz Cort{\'{e}}s and Natalia Rojas and Dante Travisany and Alex Di G{\'{e}}nova and Natalia Gajardo and Nicole Ehrenfeld and Alejandro Maass}, title = {Reconstruction of the microalga Nannochloropsis salina genome-scale metabolic model with applications to lipid production}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {66:1--66:17}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0441-1}, doi = {10.1186/S12918-017-0441-1}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LoiraMCRTGGEM17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LundKBPKKA17, author = {Anne Mathilde Lund and Christian Schr{\o}der Kaas and Julian Brandl and Lasse Ebdrup Pedersen and Helene Faustrup Kildegaard and Claus Kristensen and Mikael R{\o}rdam Andersen}, title = {Network reconstruction of the mouse secretory pathway applied on {CHO} cell transcriptome data}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {37:1--37:17}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0414-4}, doi = {10.1186/S12918-017-0414-4}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LundKBPKKA17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MaZ17, author = {Lichun Ma and Jie Zheng}, title = {A polynomial based model for cell fate prediction in human diseases}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-7}}, pages = {15--27}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0502-5}, doi = {10.1186/S12918-017-0502-5}, timestamp = {Thu, 02 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/MaZ17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MallCBIC17, author = {Raghvendra Mall and Luigi Cerulo and Halima Bensmail and Antonio Iavarone and Michele Ceccarelli}, title = {Detection of statistically significant network changes in complex biological networks}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {32:1--32:17}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0412-6}, doi = {10.1186/S12918-017-0412-6}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/MallCBIC17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Martinez-Sanchez17, author = {Mariana Esther Martinez{-}Sanchez and Marcia Hiriart and Elena R. {\'{A}}lvarez{-}Buylla}, title = {The {CD4+} {T} cell regulatory network mediates inflammatory responses during acute hyperinsulinemia: a simulation study}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {64:1--64:12}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0436-y}, doi = {10.1186/S12918-017-0436-Y}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Martinez-Sanchez17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MazayaTK17, author = {Maulida Mazaya and Hung{-}Cuong Trinh and Yung{-}Keun Kwon}, title = {Construction and analysis of gene-gene dynamics influence networks based on a Boolean model}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-7}}, pages = {101--111}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0509-y}, doi = {10.1186/S12918-017-0509-Y}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/MazayaTK17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Mendez-LopezDDE17, author = {Luis Fernando M{\'{e}}ndez{-}L{\'{o}}pez and Jose Davila{-}Velderrain and Elisa Dom{\'{\i}}nguez{-}H{\"{u}}ttinger and Christian Enr{\'{\i}}quez{-}Olgu{\'{\i}}n and Juan Carlos Mart{\'{\i}}nez{-}Garc{\'{\i}}a and Elena R. {\'{A}}lvarez{-}Buylla}, title = {Gene regulatory network underlying the immortalization of epithelial cells}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {24:1--24:15}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0393-5}, doi = {10.1186/S12918-017-0393-5}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Mendez-LopezDDE17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MoonLJLSK17, author = {Ji Hwan Moon and Sangsoo Lim and Kyuri Jo and Sangseon Lee and Seokjun Seo and Sun Kim}, title = {PINTnet: construction of condition-specific pathway interaction network by computing shortest paths on weighted {PPI}}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-2}}, pages = {15:1--15:13}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0387-3}, doi = {10.1186/S12918-017-0387-3}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MoonLJLSK17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/NortonWPP17, author = {Kerri{-}Ann Norton and Travis Wallace and Niranjan B. Pandey and Aleksander S. Popel}, title = {An agent-based model of triple-negative breast cancer: the interplay between chemokine receptor {CCR5} expression, cancer stem cells, and hypoxia}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {68:1--68:15}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0445-x}, doi = {10.1186/S12918-017-0445-X}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/NortonWPP17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/OguzWBT17, author = {Cihan Oguz and Layne T. Watson and William T. Baumann and John J. Tyson}, title = {Predicting network modules of cell cycle regulators using relative protein abundance statistics}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {30:1--30:24}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0409-1}, doi = {10.1186/S12918-017-0409-1}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/OguzWBT17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/OmelyanchukM17, author = {Leonid V. Omelyanchuk and Alina F. Munzarova}, title = {Theoretical model of mitotic spindle microtubule growth for {FRAP} curve interpretation}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-1}}, pages = {17--26}, year = {2017}, url = {https://doi.org/10.1186/s12918-016-0378-9}, doi = {10.1186/S12918-016-0378-9}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/OmelyanchukM17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PapadopoulosCNB17, author = {Theofilos Papadopoulos and Audrey Casemayou and Eric Neau and Benjamin Breuil and C{\'{e}}cile Caubet and Denis Calise and Barbara A. Thornhill and Magdalena Bachvarova and Julie Belliere and Robert L. Chevalier and Panagiotis Moulos and Dimcho Bachvarov and Benedicte Buffin{-}Meyer and St{\'{e}}phane Decramer and Fran{\c{c}}oise Conte Auriol and Jean{-}Loup Bascands and Joost P. Schanstra and Julie Klein}, title = {Systems biology combining human- and animal-data miRNA and mRNA data identifies new targets in ureteropelvic junction obstruction}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {31:1--31:11}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0411-7}, doi = {10.1186/S12918-017-0411-7}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PapadopoulosCNB17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ParkYRLLYP17, author = {Chihyun Park and So Jeong Yun and Sung Jin Ryu and Soyoung Lee and Young Sam Lee and Youngmi Yoon and Sang{-}Chul Park}, title = {Systematic identification of an integrative network module during senescence from time-series gene expression}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {36:1--36:13}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0417-1}, doi = {10.1186/S12918-017-0417-1}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ParkYRLLYP17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ParmarDSM17, author = {Jignesh H. Parmar and Grey Davis and Hope Shevchuk and Pedro Mendes}, title = {Modeling the dynamics of mouse iron body distribution: hepcidin is necessary but not sufficient}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {57:1--57:13}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0431-3}, doi = {10.1186/S12918-017-0431-3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ParmarDSM17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PengLMWZN17, author = {Tao Peng and Linan Liu and Adam L. Maclean and Chi Wut Wong and Weian Zhao and Qing Nie}, title = {A mathematical model of mechanotransduction reveals how mechanical memory regulates mesenchymal stem cell fate decisions}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {55:1--55:15}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0429-x}, doi = {10.1186/S12918-017-0429-X}, timestamp = {Thu, 23 Dec 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/PengLMWZN17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PezzeN17, author = {Piero Dalle Pezze and Nicolas Le Nov{\`{e}}re}, title = {SBpipe: a collection of pipelines for automating repetitive simulation and analysis tasks}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {46:1--46:5}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0423-3}, doi = {10.1186/S12918-017-0423-3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PezzeN17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PodkolodnayaTP17, author = {Olga A. Podkolodnaya and Natalya N. Tverdokhleb and Nikolay Podkolodnyy}, title = {Computational modeling of the cell-autonomous mammalian circadian oscillator}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-1}}, pages = {27--42}, year = {2017}, url = {https://doi.org/10.1186/s12918-016-0379-8}, doi = {10.1186/S12918-016-0379-8}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PodkolodnayaTP17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/RodicBZDD17, author = {Andjela Rodic and Bojana Blagojevic and Evgeny M. Zdobnov and Magdalena Djordjevic and Marko Djordjevic}, title = {Understanding key features of bacterial restriction-modification systems through quantitative modeling}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-1}}, pages = {1--15}, year = {2017}, url = {https://doi.org/10.1186/s12918-016-0377-x}, doi = {10.1186/S12918-016-0377-X}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/RodicBZDD17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/RowlandPM17, author = {Michael A. Rowland and Edward J. Perkins and Michael L. Mayo}, title = {Physiological fidelity or model parsimony? The relative performance of reverse-toxicokinetic modeling approaches}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {35:1--35:11}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0407-3}, doi = {10.1186/S12918-017-0407-3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/RowlandPM17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/RoyRS17, author = {Ranjita Dutta Roy and Christian Rosenmund and Melanie I. Stefan}, title = {Cooperative binding mitigates the high-dose hook effect}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {74:1--74:10}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0447-8}, doi = {10.1186/S12918-017-0447-8}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/RoyRS17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/RuffaloSPVB17, author = {Matthew Ruffalo and Petar Stojanov and Venkata Krishna Pillutla and Rohan Varma and Ziv Bar{-}Joseph}, title = {Reconstructing cancer drug response networks using multitask learning}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {96:1--96:15}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0471-8}, doi = {10.1186/S12918-017-0471-8}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/RuffaloSPVB17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SaituaTPA17, author = {Francisco Saitua and Paulina Torres and Jos{\'{e}} Ricardo P{\'{e}}rez{-}Correa and Eduardo Agosin}, title = {Dynamic genome-scale metabolic modeling of the yeast Pichia pastoris}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {27:1--27:21}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0408-2}, doi = {10.1186/S12918-017-0408-2}, timestamp = {Thu, 04 Jul 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SaituaTPA17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SarkerPNKUR17, author = {Joyatee M. Sarker and Serena M. Pearce and Robert P. Nelson Jr. and Tamara Kinzer{-}Ursem and David M. Umulis and Ann E. Rundell}, title = {An Integrative multi-lineage model of variation in leukopoiesis and acute myelogenous leukemia}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {78:1--78:18}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0469-2}, doi = {10.1186/S12918-017-0469-2}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SarkerPNKUR17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Serrano-Bermudez17, author = {Luis Miguel Serrano{-}Berm{\'{u}}dez and Andr{\'{e}}s Fernando Gonz{\'{a}}lez Barrios and Costas D. Maranas and Dolly Montoya Casta{\~{n}}o}, title = {Clostridium butyricum maximizes growth while minimizing enzyme usage and {ATP} production: metabolic flux distribution of a strain cultured in glycerol}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {58:1--58:13}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0434-0}, doi = {10.1186/S12918-017-0434-0}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Serrano-Bermudez17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ShiW17, author = {Xiaofei Shi and Ruiqi Wang}, title = {Glioma cell fate decisions mediated by Dll1-Jag1-Fringe in Notch1 signaling pathway}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-4}}, pages = {75--84}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0457-6}, doi = {10.1186/S12918-017-0457-6}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ShiW17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SimpsonLS17, author = {Matthew J. Simpson and Kai{-}Yin Lo and Yung{-}Shin Sun}, title = {Quantifying the roles of random motility and directed motility using advection-diffusion theory for a 3T3 fibroblast cell migration assay stimulated with an electric field}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {39:1--39:9}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0413-5}, doi = {10.1186/S12918-017-0413-5}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SimpsonLS17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SnowdenGT17, author = {Thomas J. Snowden and Piet H. Van Der Graaf and Marcus J. Tindall}, title = {A combined model reduction algorithm for controlled biochemical systems}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {17:1--17:18}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0397-1}, doi = {10.1186/S12918-017-0397-1}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SnowdenGT17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SuWHHCL17, author = {Min{-}Gang Su and Julia Tzu{-}Ya Weng and Justin Bo{-}Kai Hsu and Kai{-}Yao Huang and Yu{-}Hsiang Chi and Tzong{-}Yi Lee}, title = {Investigation and identification of functional post-translational modification sites associated with drug binding and protein-protein interactions}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-7}}, pages = {69--80}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0506-1}, doi = {10.1186/S12918-017-0506-1}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SuWHHCL17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SunLZW17, author = {Duanchen Sun and Yinliang Liu and Xiang{-}Sun Zhang and Ling{-}Yun Wu}, title = {NetGen: a novel network-based probabilistic generative model for gene set functional enrichment analysis}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-4}}, pages = {61--74}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0456-7}, doi = {10.1186/S12918-017-0456-7}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SunLZW17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SunWZWLX17, author = {Jingchun Sun and Qiang Wei and Yubo Zhou and Jingqi Wang and Qi Liu and Hua Xu}, title = {A systematic analysis of FDA-approved anticancer drugs}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-5}}, pages = {87:1--87:17}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0464-7}, doi = {10.1186/S12918-017-0464-7}, timestamp = {Thu, 19 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SunWZWLX17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TianZGH17, author = {Bo Tian and Can Zhao and Feiyang Gu and Zengyou He}, title = {A two-step framework for inferring direct protein-protein interaction network from {AP-MS} data}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-4}}, pages = {17--25}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0452-y}, doi = {10.1186/S12918-017-0452-Y}, timestamp = {Thu, 28 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/TianZGH17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Trejo-BanosTE17, author = {Daniel Trejo{-}Ba{\~{n}}os and Pauline Tr{\'{e}}bulle and Mohamed Elati}, title = {Integrating transcriptional activity in genome-scale models of metabolism}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-7}}, pages = {81--90}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0507-0}, doi = {10.1186/S12918-017-0507-0}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Trejo-BanosTE17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TrescherML17, author = {Saskia Trescher and Jannes M{\"{u}}nchmeyer and Ulf Leser}, title = {Estimating genome-wide regulatory activity from multi-omics data sets using mathematical optimization}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {41:1--41:18}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0419-z}, doi = {10.1186/S12918-017-0419-Z}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/TrescherML17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TruongK17, author = {Cong{-}Doan Truong and Yung{-}Keun Kwon}, title = {Investigation on changes of modularity and robustness by edge-removal mutations in signaling networks}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-7}}, pages = {57--68}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0505-2}, doi = {10.1186/S12918-017-0505-2}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/TruongK17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Tsuruyama17, author = {Tatsuaki Tsuruyama}, title = {Kinetic stability analysis of protein assembly on the center manifold around the critical point}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {13:1--13:9}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0391-7}, doi = {10.1186/S12918-017-0391-7}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Tsuruyama17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TurkiW17, author = {Turki Turki and Zhi Wei}, title = {A link prediction approach to cancer drug sensitivity prediction}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-5}}, pages = {94:1--94:14}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0463-8}, doi = {10.1186/S12918-017-0463-8}, timestamp = {Thu, 28 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/TurkiW17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WangM17, author = {Yulin Wang and Hongyu Miao}, title = {Parameter identifiability-based optimal observation remedy for biological networks}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {53:1--53:13}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0432-2}, doi = {10.1186/S12918-017-0432-2}, timestamp = {Tue, 09 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/WangM17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WangQ17, author = {Yijie Wang and Xiaoning Qian}, title = {Finding low-conductance sets with dense interactions {(FLCD)} for better protein complex prediction}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {3}, pages = {22:1--22:11}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0405-5}, doi = {10.1186/S12918-017-0405-5}, timestamp = {Mon, 01 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/WangQ17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WangZC17, author = {Yong Wang and Xiang{-}Sun Zhang and Luonan Chen}, title = {Understanding biological systems through the lens of data}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-4}}, pages = {77:1--77:2}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0450-0}, doi = {10.1186/S12918-017-0450-0}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WangZC17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WeiGNL17, author = {Ou Wei and Zonghao Guo and Yun Niu and Wenyuan Liao}, title = {Model checking optimal finite-horizon control for probabilistic gene regulatory networks}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {6}, pages = {75--88}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0481-6}, doi = {10.1186/S12918-017-0481-6}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WeiGNL17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WelkenhuysenBBB17, author = {Niek Welkenhuysen and Johannes Borgqvist and Mattias Backman and Loubna Bendrioua and Mattias Goks{\"{o}}r and Caroline Beck Adiels and Marija Cvijovic and Stefan Hohmann}, title = {Single-cell study links metabolism with nutrient signaling and reveals sources of variability}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {59:1--59:10}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0435-z}, doi = {10.1186/S12918-017-0435-Z}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WelkenhuysenBBB17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WillH17, author = {Thorsten Will and Volkhard Helms}, title = {Rewiring of the inferred protein interactome during blood development studied with the tool PPICompare}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {44:1--44:19}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0400-x}, doi = {10.1186/S12918-017-0400-X}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WillH17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WuMWRPL17, author = {Haoyang Wu and Elise Miller and Denethi Wijegunawardana and Kelly Regan and Philip R. O. Payne and Fuhai Li}, title = {MD-Miner: a network-based approach for personalized drug repositioning}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-5}}, pages = {86:1--86:8}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0462-9}, doi = {10.1186/S12918-017-0462-9}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WuMWRPL17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/XuZZG17, author = {Ying Xu and Jiaogen Zhou and Shuigeng Zhou and Jihong Guan}, title = {CPredictor3.0: detecting protein complexes from {PPI} networks with expression data and functional annotations}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-7}}, pages = {45--56}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0504-3}, doi = {10.1186/S12918-017-0504-3}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/XuZZG17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YangTSC17, author = {Xinan Holly Yang and Fangming Tang and Jisu Shin and John M. Cunningham}, title = {Incorporating genomic, transcriptomic and clinical data: a prognostic and stem cell-like {MYC} and {PRC} imbalance in high-risk neuroblastoma}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-5}}, pages = {92:1--92:17}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0466-5}, doi = {10.1186/S12918-017-0466-5}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/YangTSC17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YangYWLYZ17, author = {Jian Yang and Tinghong Yang and Duzhi Wu and Limei Lin and Fan Yang and Jing Zhao}, title = {The integration of weighted human gene association networks based on link prediction}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {12:1--12:17}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0398-0}, doi = {10.1186/S12918-017-0398-0}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/YangYWLYZ17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZhangGPTG17, author = {Zehua Zhang and Kecheng Guo and Gaofeng Pan and Jijun Tang and Fei Guo}, title = {Improvement of phylogenetic method to analyze compositional heterogeneity}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-4}}, pages = {27--33}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0453-x}, doi = {10.1186/S12918-017-0453-X}, timestamp = {Tue, 12 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ZhangGPTG17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZhangLSLC17, author = {Ben{-}gong Zhang and Weibo Li and Yazhou Shi and Xiaoping Liu and Luonan Chen}, title = {Detecting causality from short time-series data based on prediction of topologically equivalent attractors}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-7}}, pages = {141--150}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0512-3}, doi = {10.1186/S12918-017-0512-3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ZhangLSLC17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZhangLZZL17, author = {Wenfei Zhang and Ying Liu and Mindy Zhang and Cheng Zhu and Yuefeng Lu}, title = {Quantitative reproducibility analysis for identifying reproducible targets from high-throughput experiments}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {73:1--73:7}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0444-y}, doi = {10.1186/S12918-017-0444-Y}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ZhangLZZL17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZhangYLCTZ17, author = {Wen Zhang and Xiang Yue and Feng Liu and Yanlin Chen and Shikui Tu and Xining Zhang}, title = {A unified frame of predicting side effects of drugs by using linear neighborhood similarity}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {6}, pages = {23--34}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0477-2}, doi = {10.1186/S12918-017-0477-2}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ZhangYLCTZ17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZhengRXZL17, author = {W. Jim Zheng and Jianhua Ruan and Hua Xu and Zhongming Zhao and Zhangdong Liu}, title = {The International Conference on Intelligent Biology and Medicine {(ICIBM)} 2016: putting systems biology to work}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-5}}, pages = {88:1--88:3}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0461-x}, doi = {10.1186/S12918-017-0461-X}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ZhengRXZL17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZihayatDA17, author = {Morteza Zihayat and Heidar Davoudi and Aijun An}, title = {Mining significant high utility gene regulation sequential patterns}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {6}, pages = {109:1--109:14}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0475-4}, doi = {10.1186/S12918-017-0475-4}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ZihayatDA17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZimmerADA17, author = {Anat Zimmer and Shlomit Amar{-}Farkash and Tamar Danon and Uri Alon}, title = {Dynamic proteomics reveals bimodal protein dynamics of cancer cells in response to {HSP90} inhibitor}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {1}, pages = {33:1--33:11}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0410-8}, doi = {10.1186/S12918-017-0410-8}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ZimmerADA17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZollanvariA17, author = {Amin Zollanvari and Gil Alterovitz}, title = {{SNP} by {SNP} by environment interaction network of alcoholism}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {3}, pages = {19:1--19:11}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0403-7}, doi = {10.1186/S12918-017-0403-7}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ZollanvariA17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZouWZM17, author = {Quan Zou and Shixiang Wan and Xiangxiang Zeng and Zhanshan (Sam) Ma}, title = {Reconstructing evolutionary trees in parallel for massive sequences}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {6}, pages = {15--21}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0476-3}, doi = {10.1186/S12918-017-0476-3}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/ZouWZM17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/AndorferHHLMP16, author = {Peter Andorfer and Alexander Heuwieser and Andreas Heinzel and Arno Lukas and Bernd Mayer and Paul Perco}, title = {Vascular endothelial growth factor {A} as predictive marker for mTOR inhibition in relapsing high-grade serous ovarian cancer}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {33}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0278-z}, doi = {10.1186/S12918-016-0278-Z}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/AndorferHHLMP16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BabelB16, author = {Heiko Babel and Ilka B. Bischofs}, title = {Molecular and cellular factors control signal transduction via switchable allosteric modulator proteins (SAMPs)}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {35}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0274-3}, doi = {10.1186/S12918-016-0274-3}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/BabelB16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Bains16, author = {William Bains}, title = {Low potency toxins reveal dense interaction networks in metabolism}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {19}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0262-7}, doi = {10.1186/S12918-016-0262-7}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Bains16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BeckersDLMBFEW16, author = {Veronique Beckers and Lisa Maria Dersch and Katrin Lotz and Guido Melzer and Oliver E. Bl{\"{a}}sing and Regine Fuchs and Thomas Ehrhardt and Christoph Wittmann}, title = {\emph{In silico} metabolic network analysis of \emph{Arabidopsis} leaves}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {102}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0347-3}, doi = {10.1186/S12918-016-0347-3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BeckersDLMBFEW16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BianconiBLPCV16, author = {Fortunato Bianconi and Elisa Baldelli and Vienna Ludovini and Emanuel F. Petricoin and Lucio Crin{\`{o}} and Paolo Valigi}, title = {Erratum to: 'Conditional robustness analysis for fragility discovery and target identification in biochemical networks and in cancer systems biology'}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {24}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0267-2}, doi = {10.1186/S12918-016-0267-2}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BianconiBLPCV16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BoadaRPV16, author = {Yadira Boada and Gilberto Reynoso{-}Meza and Jes{\'{u}}s Pic{\'{o}} and Alejandro Vignoni}, title = {Multi-objective optimization framework to obtain model-based guidelines for tuning biological synthetic devices: an adaptive network case}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {27}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0269-0}, doi = {10.1186/S12918-016-0269-0}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BoadaRPV16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BorschS16, author = {Anastasiya B{\"{o}}rsch and J{\"{o}}rg Schaber}, title = {How time delay and network design shape response patterns in biochemical negative feedback systems}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {82}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0325-9}, doi = {10.1186/S12918-016-0325-9}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BorschS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BrubakerBCM16, author = {Douglas Brubaker and Alethea Barbaro and Mark R. Chance and Sam Mesiano}, title = {A dynamical systems model of progesterone receptor interactions with inflammation in human parturition}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {79}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0320-1}, doi = {10.1186/S12918-016-0320-1}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BrubakerBCM16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BrunkMMZOBCCBP16, author = {Elizabeth Brunk and Nathan Mih and Jonathan Monk and Zhen Zhang and Edward J. O'Brien and Spencer E. Bliven and Ke Chen and Roger L. Chang and Philip E. Bourne and Bernhard O. Palsson}, title = {Systems biology of the structural proteome}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {26}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0271-6}, doi = {10.1186/S12918-016-0271-6}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BrunkMMZOBCCBP16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BuddenC16, author = {David M. Budden and Edmund J. Crampin}, title = {Information theoretic approaches for inference of biological networks from continuous-valued data}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {89}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0331-y}, doi = {10.1186/S12918-016-0331-Y}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BuddenC16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/CalderoneFAPACB16, author = {Alberto Calderone and Matteo Formenti and Federica Aprea and Michele Papa and Lilia Alberghina and Anna Maria Colangelo and Paola Bertolazzi}, title = {Comparing Alzheimer's and Parkinson's diseases networks using graph communities structure}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {25}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0270-7}, doi = {10.1186/S12918-016-0270-7}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/CalderoneFAPACB16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/CamilloCET16, author = {Barbara Di Camillo and Azzurra Carlon and Federica Eduati and Gianna Maria Toffolo}, title = {A rule-based model of insulin signalling pathway}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {38}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0281-4}, doi = {10.1186/S12918-016-0281-4}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/CamilloCET16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/CatozziDVS16, author = {Simona Catozzi and Juan Pablo Di{-}Bella and Alejandra C. Ventura and Jacques{-}A. Sepulchre}, title = {Signaling cascades transmit information downstream and upstream but unlikely simultaneously}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {84}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0303-2}, doi = {10.1186/S12918-016-0303-2}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/CatozziDVS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChaeLNK16, author = {Heejoon Chae and Sangseon Lee and Kenneth P. Nephew and Sun Kim}, title = {Subtype-specific CpG island shore methylation and mutation patterns in 30 breast cancer cell lines}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {4}, pages = {433--443}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0356-2}, doi = {10.1186/S12918-016-0356-2}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChaeLNK16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChangHLTTCW16, author = {Hsin{-}Chuan Chang and Tsung{-}Han Hsieh and Yi{-}Wei Lee and Cheng{-}Fong Tsai and Ya{-}Ni Tsai and Cheng{-}Chung Cheng and Hsei{-}Wei Wang}, title = {c-Myc and viral cofactor Kaposin {B} co-operate to elicit angiogenesis through modulating miRNome traits of endothelial cells}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {{S-1}}, pages = {1}, year = {2016}, url = {https://doi.org/10.1186/s12918-015-0242-3}, doi = {10.1186/S12918-015-0242-3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChangHLTTCW16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChenGHPBH16, author = {Jin Chen and Jose A. Gomez and Kai H{\"{o}}ffner and Poonam Phalak and Paul I. Barton and Michael A. Henson}, title = {Spatiotemporal modeling of microbial metabolism}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {21}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0259-2}, doi = {10.1186/S12918-016-0259-2}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChenGHPBH16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChenL16, author = {Bor{-}Sen Chen and Cheng{-}Wei Li}, title = {Constructing an integrated genetic and epigenetic cellular network for whole cellular mechanism using high-throughput next-generation sequencing data}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {18}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0256-5}, doi = {10.1186/S12918-016-0256-5}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChenL16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChenL16a, author = {Pei Chen and Yongjun Li}, title = {The decrease of consistence probability: at the crossroad of catastrophic transition of a biological system}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {{S-2}}, pages = {50}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0295-y}, doi = {10.1186/S12918-016-0295-Y}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/ChenL16a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChengLSZ16, author = {Feixiong Cheng and Chuang Liu and Bairong Shen and Zhongming Zhao}, title = {Investigating cellular network heterogeneity and modularity in cancer: a network entropy and unbalanced motif approach}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {{S-3}}, pages = {65}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0309-9}, doi = {10.1186/S12918-016-0309-9}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChengLSZ16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChoPLLC16, author = {Sung{-}Hwan Cho and Sang{-}Min Park and Hosung Lee and Hwang{-}Yeol Lee and Kwang{-}Hyun Cho}, title = {Attractor landscape analysis of colorectal tumorigenesis and its reversion}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {96}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0341-9}, doi = {10.1186/S12918-016-0341-9}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChoPLLC16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChooC16, author = {Sang{-}Mok Choo and Kwang{-}Hyun Cho}, title = {An efficient algorithm for identifying primary phenotype attractors of a large-scale Boolean network}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {95}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0338-4}, doi = {10.1186/S12918-016-0338-4}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChooC16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/DaiWMLJL16, author = {Wentao Dai and Aiping Wu and Liang{-}Xiao Ma and Yi{-}Xue Li and Taijiao Jiang and Yuan{-}Yuan Li}, title = {A novel index of protein-protein interface propensity improves interface residue recognition}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {4}, pages = {381--392}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0351-7}, doi = {10.1186/S12918-016-0351-7}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/DaiWMLJL16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Doeschl-WilsonW16, author = {Andrea Doeschl{-}Wilson and Alison Wilson and Jens Nielsen and Hans Nauwynck and Alan L. Archibald and Tahar Ait{-}Ali}, title = {Combining laboratory and mathematical models to infer mechanisms underlying kinetic changes in macrophage susceptibility to an {RNA} virus}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {101}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0345-5}, doi = {10.1186/S12918-016-0345-5}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/Doeschl-WilsonW16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/DongWL16, author = {Qiwen Dong and Kai Wang and Xuan Liu}, title = {Identifying the missing proteins in human proteome by biological language model}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {4}, pages = {393--399}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0352-6}, doi = {10.1186/S12918-016-0352-6}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/DongWL16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/DuHYKRIMSS16, author = {Lei Du and Heng Huang and Jingwen Yan and Sungeun Kim and Shannon L. Risacher and Mark Inlow and Jason H. Moore and Andrew J. Saykin and Li Shen}, title = {Structured sparse {CCA} for brain imaging genetics via graph {OSCAR}}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {{S-3}}, pages = {68}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0312-1}, doi = {10.1186/S12918-016-0312-1}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/DuHYKRIMSS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/DuZKDTZRAP16, author = {Bin Du and Daniel C. Zielinski and Erol S. Kavvas and Andreas Dr{\"{a}}ger and Justin Tan and Zhen Zhang and Kayla E. Ruggiero and Garri A. Arzumanyan and Bernhard O. Palsson}, title = {Evaluation of rate law approximations in bottom-up kinetic models of metabolism}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {40}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0283-2}, doi = {10.1186/S12918-016-0283-2}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/DuZKDTZRAP16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/EkennaTA16, author = {Chinwe Ekenna and Shawna L. Thomas and Nancy M. Amato}, title = {Adaptive local learning in sampling based motion planning for protein folding}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {{S-2}}, pages = {49}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0297-9}, doi = {10.1186/S12918-016-0297-9}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/EkennaTA16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/FiedlerRTHH16, author = {Anna Fiedler and Sebastian Raeth and Fabian J. Theis and Angelika Hausser and Jan Hasenauer}, title = {Tailored parameter optimization methods for ordinary differential equation models with steady-state constraints}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {80}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0319-7}, doi = {10.1186/S12918-016-0319-7}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/FiedlerRTHH16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/FleckPC16, author = {Julia Lima Fleck and Ana Br{\^{a}}ndusa Pavel and Christos G. Cassandras}, title = {Integrating mutation and gene expression cross-sectional data to infer cancer progression}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {12}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0255-6}, doi = {10.1186/S12918-016-0255-6}, timestamp = {Sun, 01 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/FleckPC16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/FoladorCSFSGGBA16, author = {Edson Luiz Folador and Paulo Vin{\'{\i}}cius Sanches Daltro de Carvalho and Wanderson Marques Silva and Rafaela Salgado Ferreira and Artur Silva and M. Michael Gromiha and Preetam Ghosh and Debmalya Barh and Vasco Ariston de Carvalho Azevedo and Richard R{\"{o}}ttger}, title = {\emph{In silico} identification of essential proteins in \emph{Corynebacterium pseudotuberculosis} based on protein-protein interaction networks}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {103:1--103:9}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0346-4}, doi = {10.1186/S12918-016-0346-4}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/FoladorCSFSGGBA16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GanA16, author = {Xiao Gan and R{\'{e}}ka Albert}, title = {Analysis of a dynamic model of guard cell signaling reveals the stability of signal propagation}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {78}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0327-7}, doi = {10.1186/S12918-016-0327-7}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GanA16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GaoAMPGC16, author = {Xuefeng Gao and Christophe Arpin and Jacqueline Marvel and Sotiris A. Prokopiou and Olivier Gandrillon and Fabien Crauste}, title = {{IL-2} sensitivity and exogenous {IL-2} concentration gradient tune the productive contact duration of CD8\({}^{\mbox{+}}\) {T} cell-APC: a multiscale modeling study}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {77}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0323-y}, doi = {10.1186/S12918-016-0323-Y}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GaoAMPGC16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GhazanfarBOLY16, author = {Shila Ghazanfar and Adam J. Bisogni and John T. Ormerod and David M. Lin and Jean Yee Hwa Yang}, title = {Integrated single cell data analysis reveals cell specific networks and novel coactivation markers}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {{S-5}}, pages = {11--24}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0370-4}, doi = {10.1186/S12918-016-0370-4}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GhazanfarBOLY16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HaoF16, author = {Wenrui Hao and Avner Friedman}, title = {Mathematical model on Alzheimer's disease}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {108:1--108:18}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0348-2}, doi = {10.1186/S12918-016-0348-2}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/HaoF16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HoardJMT16, author = {Brittany R. Hoard and Bruna Jacobson and Kasra Manavi and Lydia Tapia}, title = {Extending rule-based methods to model molecular geometry and 3D model resolution}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {{S-2}}, pages = {48}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0294-z}, doi = {10.1186/S12918-016-0294-Z}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HoardJMT16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HosseiniW16, author = {Sayed{-}Rzgar Hosseini and Andreas Wagner}, title = {The potential for non-adaptive origins of evolutionary innovations in central carbon metabolism}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {97}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0343-7}, doi = {10.1186/S12918-016-0343-7}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HosseiniW16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HsuCCHC16, author = {Yu{-}Ching Hsu and Yu{-}Chiao Chiu and Yidong Chen and Tzu{-}Hung Hsiao and Eric Y. Chuang}, title = {A simple gene set-based method accurately predicts the synergy of drug pairs}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {{S-3}}, pages = {66}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0310-3}, doi = {10.1186/S12918-016-0310-3}, timestamp = {Tue, 28 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HsuCCHC16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HuangLW16, author = {Lei Huang and Li Liao and Cathy H. Wu}, title = {Protein-protein interaction prediction based on multiple kernels and partial network with linear programming}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {{S-2}}, pages = {45}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0296-x}, doi = {10.1186/S12918-016-0296-X}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HuangLW16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HuangSKJWL16, author = {Chien{-}Hsun Huang and Min{-}Gang Su and Hui{-}Ju Kao and Jhih{-}Hua Jhong and Shun{-}Long Weng and Tzong{-}Yi Lee}, title = {UbiSite: incorporating two-layered machine learning method with substrate motifs to predict ubiquitin-conjugation site on lysines}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {{S-1}}, pages = {6}, year = {2016}, url = {https://doi.org/10.1186/s12918-015-0246-z}, doi = {10.1186/S12918-015-0246-Z}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HuangSKJWL16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HuangWLW16, author = {Kai{-}Yao Huang and Julia Tzu{-}Ya Weng and Tzong{-}Yi Lee and Shun{-}Long Weng}, title = {A new scheme to discover functional associations and regulatory networks of {E3} ubiquitin ligases}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {{S-1}}, pages = {3}, year = {2016}, url = {https://doi.org/10.1186/s12918-015-0244-1}, doi = {10.1186/S12918-015-0244-1}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HuangWLW16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HuangWZ16, author = {Yan Huang and Li Wang and Lin{-}sen Zan}, title = {{ARN:} analysis and prediction by adipogenic professional database}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {57}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0321-0}, doi = {10.1186/S12918-016-0321-0}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HuangWZ16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HuangYCY16, author = {Yu{-}An Huang and Zhu{-}Hong You and Xing Chen and Guiying Yan}, title = {Improved protein-protein interactions prediction via weighted sparse representation model combining continuous wavelet descriptor and PseAA composition}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {4}, pages = {485--494}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0360-6}, doi = {10.1186/S12918-016-0360-6}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HuangYCY16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/IversonGMWGGZ16, author = {Andrew Iverson and Erin Garza and Ryan Manow and Jinhua Wang and Yuanyuan Gao and Scott Grayburn and Shengde Zhou}, title = {Engineering a synthetic anaerobic respiration for reduction of xylose to xylitol using {NADH} output of glucose catabolism by \emph{Escherichia coli} {AI21}}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {31}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0276-1}, doi = {10.1186/S12918-016-0276-1}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/IversonGMWGGZ16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/JankowskiOMT16, author = {Aleksander Jankowski and Paulina Obara and Utsav Mathur and Jerzy Tiuryn}, title = {Enhanceosome transcription factors preferentially dimerize with high mobility group proteins}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {14}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0258-3}, doi = {10.1186/S12918-016-0258-3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/JankowskiOMT16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/JeanquartierJCH16, author = {Fleur Jeanquartier and Claire Jean{-}Quartier and David Cemernek and Andreas Holzinger}, title = {In silico modeling for tumor growth visualization}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {59}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0318-8}, doi = {10.1186/S12918-016-0318-8}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/JeanquartierJCH16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/JermusykMR16, author = {Ashley A. Jermusyk and Nicholas P. Murphy and Gregory T. Reeves}, title = {Analyzing negative feedback using a synthetic gene network expressed in the \emph{Drosophila melanogaster} embryo}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {85}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0330-z}, doi = {10.1186/S12918-016-0330-Z}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/JermusykMR16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/JonakKSJAP16, author = {Katarzyna Jonak and Monika Kurpas and Katarzyna Szoltysek and Patryk Janus and Agata Abramowicz and Krzysztof Puszynski}, title = {A novel mathematical model of ATM/p53/NF- \emph{{\(\kappa\)}}B pathways points to the importance of the {DDR} switch-off mechanisms}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {75}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0293-0}, doi = {10.1186/S12918-016-0293-0}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/JonakKSJAP16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/JonakKSJAP16a, author = {Katarzyna Jonak and Monika Kurpas and Katarzyna Szoltysek and Patryk Janus and Agata Abramowicz and Krzysztof Puszynski}, title = {Erratum to: {A} novel mathematical model of ATM/p53/NF-{\(\kappa\)}B pathways points to the importance of the {DDR} switch-off mechanisms}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {99}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0340-x}, doi = {10.1186/S12918-016-0340-X}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/JonakKSJAP16a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/JuarezLFGJAMM16, author = {Edwin F. Juarez and Roy Lau and Samuel H. Friedman and Ahmadreza Ghaffarizadeh and Edmond A. Jonckheere and David B. Agus and Shannon M. Mumenthaler and Paul Macklin}, title = {Quantifying differences in cell line population dynamics using CellPD}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {92}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0337-5}, doi = {10.1186/S12918-016-0337-5}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/JuarezLFGJAMM16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/JungASKKJK16, author = {Inuk Jung and Hongryul Ahn and Seon{-}Ju Shin and Jukon Kim and Hawk{-}Bin Kwon and Woosuk Jung and Sun Kim}, title = {Clustering and evolutionary analysis of small RNAs identify regulatory siRNA clusters induced under drought stress in rice}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {4}, pages = {423--432}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0355-3}, doi = {10.1186/S12918-016-0355-3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/JungASKKJK16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KimTFHGC16, author = {Seong Gon Kim and Nawanol Theera{-}Ampornpunt and Chih{-}Hao Fang and Mrudul Harwani and Ananth Grama and Somali Chaterji}, title = {Opening up the blackbox: an interpretable deep neural network-based classifier for cell-type specific enhancer predictions}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {{S-2}}, pages = {54}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0302-3}, doi = {10.1186/S12918-016-0302-3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KimTFHGC16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KolczykC16, author = {Katrin Kolczyk and Carsten Conradi}, title = {Challenges in horizontal model integration}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {28}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0266-3}, doi = {10.1186/S12918-016-0266-3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KolczykC16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Kwon16, author = {Yung{-}Keun Kwon}, title = {Properties of Boolean dynamics by node classification using feedback loops in a network}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {83}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0322-z}, doi = {10.1186/S12918-016-0322-Z}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Kwon16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LeeL16, author = {Min{-}Su Lee and HyungJune Lee}, title = {DMirNet: Inferring direct microRNA-mRNA association networks}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {{S-5}}, pages = {51--63}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0373-1}, doi = {10.1186/S12918-016-0373-1}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LeeL16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LegrandLRVG16, author = {Jonathan Legrand and Jean{-}Benoist L{\'{e}}ger and St{\'{e}}phane Robin and Teva Vernoux and Yann Gu{\'{e}}don}, title = {Modelling the influence of dimerisation sequence dissimilarities on the auxin signalling network}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {22}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0254-7}, doi = {10.1186/S12918-016-0254-7}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LegrandLRVG16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LeniveKS16, author = {Oleg Lenive and Paul D. W. Kirk and Michael P. H. Stumpf}, title = {Inferring extrinsic noise from single-cell gene expression data using approximate Bayesian computation}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {81}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0324-x}, doi = {10.1186/S12918-016-0324-X}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LeniveKS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LeonWFB16, author = {Miriam Leon and Mae L. Woods and Alex J. H. Fedorec and Chris P. Barnes}, title = {A computational method for the investigation of multistable systems and its application to genetic switches}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {130:1--130:12}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0375-z}, doi = {10.1186/S12918-016-0375-Z}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LeonWFB16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LewisBCMC16, author = {Joanna Lewis and Charles E. Breeze and Jane Charlesworth and Oliver J. Maclaren and Jonathan Cooper}, title = {Where next for the reproducibility agenda in computational biology?}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {52}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0288-x}, doi = {10.1186/S12918-016-0288-X}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LewisBCMC16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiCCL16, author = {Ru{-}Dong Li and Hui Cheng and Tao Cheng and Lei Liu}, title = {Digitalization of a non-irradiated acute myeloid leukemia model}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {{S-3}}, pages = {64}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0308-x}, doi = {10.1186/S12918-016-0308-X}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiCCL16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LinPHCPGZL16, author = {Mingyan Lin and Erika Pedrosa and Anastasia Hrabovsky and Jian Chen and Benjamin R. Puliafito and Stephanie R. Gilbert and Deyou Zheng and Herbert M. Lachman}, title = {Integrative transcriptome network analysis of iPSC-derived neurons from schizophrenia and schizoaffective disorder patients with 22q11.2 deletion}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {105:1--105:20}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0366-0}, doi = {10.1186/S12918-016-0366-0}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LinPHCPGZL16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiuGXGLZ16, author = {Hui Liu and Mengmeng Guo and Ting Xue and Jihong Guan and Libo Luo and Ziheng Zhuang}, title = {Screening lifespan-extending drugs in Caenorhabditis elegans via label propagation on drug-protein networks}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {4}, pages = {509--519}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0362-4}, doi = {10.1186/S12918-016-0362-4}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiuGXGLZ16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiuJGYWL16, author = {Cong Liu and Jianping Jiang and Jianlei Gu and Zhangsheng Yu and Tao Wang and Hui Lu}, title = {High-dimensional omics data analysis using a variable screening protocol with prior knowledge integration {(SKI)}}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {4}, pages = {457--464}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0358-0}, doi = {10.1186/S12918-016-0358-0}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/LiuJGYWL16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiuLAS16, author = {Yongchao Liu and Martin Loewer and Srinivas Aluru and Bertil Schmidt}, title = {SNVSniffer: an integrated caller for germline and somatic single-nucleotide and indel mutations}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {{S-2}}, pages = {47}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0300-5}, doi = {10.1186/S12918-016-0300-5}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiuLAS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiuQLJ16, author = {Rongjie Liu and Chunjiang Qian and Shuqian Liu and Yufang Jin}, title = {State feedback control design for Boolean networks}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {{S-3}}, pages = {70}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0314-z}, doi = {10.1186/S12918-016-0314-Z}, timestamp = {Sun, 04 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiuQLJ16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LuckW16, author = {Alexander L{\"{u}}ck and Verena Wolf}, title = {Generalized method of moments for estimating parameters of stochastic reaction networks}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {98:1--98:12}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0342-8}, doi = {10.1186/S12918-016-0342-8}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LuckW16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MangelBA16, author = {Marc Mangel and Michael B. Bonsall and Aziz Aboobaker}, title = {Feedback control in planarian stem cell systems}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {17}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0261-8}, doi = {10.1186/S12918-016-0261-8}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MangelBA16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MangericaoPZ16, author = {Tatiana C. Mangericao and Zhanhao Peng and Xuegong Zhang}, title = {Computational prediction of {CRISPR} cassettes in gut metagenome samples from Chinese type-2 diabetic patients and healthy controls}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {{S-1}}, pages = {5}, year = {2016}, url = {https://doi.org/10.1186/s12918-015-0248-x}, doi = {10.1186/S12918-015-0248-X}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MangericaoPZ16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MartinsEWM16, author = {Teresa Vaz Martins and Matthew J. Evans and Derin B. Wysham and Richard J. Morris}, title = {Nuclear pores enable sustained perinuclear calcium oscillations}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {55}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0289-9}, doi = {10.1186/S12918-016-0289-9}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MartinsEWM16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MartyushenkoJGA16, author = {Nikolay Martyushenko and Sigurd Hagen Johansen and Cheol{-}Min Ghim and Eivind Almaas}, title = {Hypothetical biomolecular probe based on a genetic switch with tunable symmetry and stability}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {39}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0279-y}, doi = {10.1186/S12918-016-0279-Y}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MartyushenkoJGA16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/McDermottMGEJBN16, author = {Jason E. McDermott and Hugh D. Mitchell and Lisa E. Gralinski and Amie J. Eisfeld and Laurence Josset and Armand Bankhead III and Gabriele Neumann and Susan C. Tilton and Alexandra Sch{\"{a}}fer and Chengjun Li and Shufang Fan and Shannon K. McWeeney and Ralph S. Baric and Michael G. Katze and Katrina M. Waters}, title = {The effect of inhibition of {PP1} and TNF{\(\alpha\)} signaling on pathogenesis of {SARS} coronavirus}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {93}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0336-6}, doi = {10.1186/S12918-016-0336-6}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/McDermottMGEJBN16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/McKenzieKSWZ16, author = {Andrew McKenzie and Igor Katsyv and Won{-}Min Song and Minghui Wang and Bin Zhang}, title = {{DGCA:} {A} comprehensive {R} package for Differential Gene Correlation Analysis}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {106:1--106:25}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0349-1}, doi = {10.1186/S12918-016-0349-1}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/McKenzieKSWZ16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MoralesBVPL16, author = {Yeimy Morales and Gabriel Bosque and Josep Veh{\'{\i}} and Jes{\'{u}}s Pic{\'{o}} and Francisco Llaneras}, title = {{PFA} toolbox: a {MATLAB} tool for Metabolic Flux Analysis}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {46}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0284-1}, doi = {10.1186/S12918-016-0284-1}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MoralesBVPL16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MurrugarraVAL16, author = {David Murrugarra and Alan Veliz{-}Cuba and Boris Aguilar and Reinhard C. Laubenbacher}, title = {Identification of control targets in Boolean molecular network models via computational algebra}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {94}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0332-x}, doi = {10.1186/S12918-016-0332-X}, timestamp = {Sun, 04 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MurrugarraVAL16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/NakicSPS16, author = {Zrinka Raguz Nakic and Gerhard Seisenbacher and Francesc Posas and Uwe Sauer}, title = {Untargeted metabolomics unravels functionalities of phosphorylation sites in Saccharomyces cerevisiae}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {104:1--104:15}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0350-8}, doi = {10.1186/S12918-016-0350-8}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/NakicSPS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/NayakBD16, author = {Losiana Nayak and Nitai P. Bhattacharyya and Rajat K. De}, title = {Wnt signal transduction pathways: modules, development and evolution}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {{S-2}}, pages = {44}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0299-7}, doi = {10.1186/S12918-016-0299-7}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/NayakBD16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/NazariehWWHH16, author = {Maryam Nazarieh and Andreas Wiese and Thorsten Will and Mohamed Hamed and Volkhard Helms}, title = {Identification of key player genes in gene regulatory networks}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {88}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0329-5}, doi = {10.1186/S12918-016-0329-5}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/NazariehWWHH16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/NguyenHST16, author = {Binh P. Nguyen and Hans Heemskerk and Peter T. C. So and Lisa Tucker{-}Kellogg}, title = {Superpixel-based segmentation of muscle fibers in multi-channel microscopy}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {{S-5}}, pages = {39--50}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0372-2}, doi = {10.1186/S12918-016-0372-2}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/NguyenHST16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/NimmegeersTLI16, author = {Philippe Nimmegeers and Dries Telen and Filip Logist and Jan F. M. Van Impe}, title = {Dynamic optimization of biological networks under parametric uncertainty}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {86}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0328-6}, doi = {10.1186/S12918-016-0328-6}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/NimmegeersTLI16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/OmonyMSB16, author = {Jimmy Omony and Astrid R. Mach{-}Aigner and Gerrit van Straten and Anton J. B. van Boxtel}, title = {Quantitative modeling and analytic assessment of the transcription dynamics of the XlnR regulon in \emph{Aspergillus niger}}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {13}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0257-4}, doi = {10.1186/S12918-016-0257-4}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/OmonyMSB16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/OremlandMBLML16, author = {Matthew Oremland and Kathryn R. Michels and Alexandra M. Bettina and Christopher Lawrence and Borna Mehrad and Reinhard C. Laubenbacher}, title = {A computational model of invasive aspergillosis in the lung and the role of iron}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {34}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0275-2}, doi = {10.1186/S12918-016-0275-2}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/OremlandMBLML16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/OuzounoglouDS16, author = {Eleftherios Ouzounoglou and Dimitra D. Dionysiou and Georgios S. Stamatakos}, title = {Differentiation resistance through altered retinoblastoma protein function in acute lymphoblastic leukemia: in silico modeling of the deregulations in the {G1/S} restriction point pathway}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {23}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0264-5}, doi = {10.1186/S12918-016-0264-5}, timestamp = {Mon, 03 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/OuzounoglouDS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PavelSR16, author = {Ana Br{\^{a}}ndusa Pavel and Dmitriy Sonkin and Anupama Reddy}, title = {Integrative modeling of multi-omics data to identify cancer drivers and infer patient-specific gene activity}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {16}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0260-9}, doi = {10.1186/S12918-016-0260-9}, timestamp = {Sun, 01 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PavelSR16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PeschZ16, author = {Robert Pesch and Ralf Zimmer}, title = {Cross-species Conservation of context-specific networks}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {76}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0304-1}, doi = {10.1186/S12918-016-0304-1}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PeschZ16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PetereitSHS16, author = {Juli Petereit and Sebastian Smith and Frederick C. Harris Jr. and Karen Schlauch}, title = {petal: Co-expression network modelling in {R}}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {{S-2}}, pages = {51}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0298-8}, doi = {10.1186/S12918-016-0298-8}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PetereitSHS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PhalakCCH16, author = {Poonam Phalak and Jin Chen and Ross P. Carlson and Michael A. Henson}, title = {Metabolic modeling of a chronic wound biofilm consortium predicts spatial partitioning of bacterial species}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {90}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0334-8}, doi = {10.1186/S12918-016-0334-8}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PhalakCCH16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PlattBZP16, author = {Daniel E. Platt and Saugata Basu and Pierre A. Zalloua and Laxmi Parida}, title = {Characterizing redescriptions using persistent homology to isolate genetic pathways contributing to pathogenesis}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {{S-1}}, pages = {10}, year = {2016}, url = {https://doi.org/10.1186/s12918-015-0251-2}, doi = {10.1186/S12918-015-0251-2}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PlattBZP16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/QinLSL16, author = {Wenyi Qin and Cong Liu and Monsheel Sodhi and Hui Lu}, title = {Meta-analysis of sex differences in gene expression in schizophrenia}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {{S-1}}, pages = {9}, year = {2016}, url = {https://doi.org/10.1186/s12918-015-0250-3}, doi = {10.1186/S12918-015-0250-3}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/QinLSL16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/RenWHAK16, author = {Yuanfang Ren and Qiyao Wang and Md Mahmudul Hasan and Ahmet Ay and Tamer Kahveci}, title = {Identifying the topology of signaling networks from partial RNAi data}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {{S-2}}, pages = {53}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0301-4}, doi = {10.1186/S12918-016-0301-4}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/RenWHAK16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/RohD16, author = {Min K. Roh and Bernie J. Daigle Jr.}, title = {SParSE++: improved event-based stochastic parameter search}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {109:1--109:15}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0367-z}, doi = {10.1186/S12918-016-0367-Z}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/RohD16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/RougnyFCP16, author = {Adrien Rougny and Christine Froidevaux and Laurence Calzone and Lo{\"{\i}}c Paulev{\'{e}}}, title = {Qualitative dynamics semantics for {SBGN} process description}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {42}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0285-0}, doi = {10.1186/S12918-016-0285-0}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/RougnyFCP16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SalakhievaSCUEW16, author = {Diana V. Salakhieva and Ildar I. Sadreev and Michael Z. Q. Chen and Yoshinori Umezawa and Aleksandr I. Evstifeev and Gavin I. Welsh and Nikolay V. Kotov}, title = {Kinetic regulation of multi-ligand binding proteins}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {32}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0277-0}, doi = {10.1186/S12918-016-0277-0}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/SalakhievaSCUEW16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SanchezC16, author = {Lucas S{\'{a}}nchez and Claudine Chaouiya}, title = {Primary sex determination of placental mammals: a modelling study uncovers dynamical developmental constraints in the formation of Sertoli and granulosa cells}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {37}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0282-3}, doi = {10.1186/S12918-016-0282-3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SanchezC16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Sands16, author = {Timothy R. Sands}, title = {Annual Acknowledgement of Reviewers}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {29}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0272-5}, doi = {10.1186/S12918-016-0272-5}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Sands16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SchivoSVKPPL16, author = {Stefano Schivo and Jetse Scholma and Paul E. van der Vet and Marcel Karperien and Janine N. Post and Jaco van de Pol and Rom Langerak}, title = {Modelling with {ANIMO:} between fuzzy logic and differential equations}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {56}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0286-z}, doi = {10.1186/S12918-016-0286-Z}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SchivoSVKPPL16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SmithHWPHBSWZBF16, author = {Robert W. Smith and Britta Helwig and Adrie H. Westphal and Eran Pel and Maximilian H{\"{o}}rner and Hannes M. Beyer and Sophia L. Samodelov and Wilfried Weber and Matias D. Zurbriggen and Jan Willem Borst and Christian Fleck}, title = {Unearthing the transition rates between photoreceptor conformers}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {110:1--110:15}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0368-y}, doi = {10.1186/S12918-016-0368-Y}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SmithHWPHBSWZBF16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SokolenkoQA16, author = {Stanislav Sokolenko and Marco Quattrociocchi and Marc Aucoin}, title = {Identifying model error in metabolic flux analysis - a generalized least squares approach}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {91}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0335-7}, doi = {10.1186/S12918-016-0335-7}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SokolenkoQA16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SunHVH16, author = {Yahui Sun and Pathima Nusrath Hameed and Karin Verspoor and Saman K. Halgamuge}, title = {A physarum-inspired prize-collecting steiner tree approach to identify subnetworks for drug repositioning}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {{S-5}}, pages = {25--38}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0371-3}, doi = {10.1186/S12918-016-0371-3}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/SunHVH16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SunZZCZYZ16, author = {Xiaoqiang Sun and Jiajun Zhang and Qi Zhao and Xing Chen and Wenbo Zhu and Guangmei Yan and Tianshou Zhou}, title = {Stochastic modeling suggests that noise reduces differentiation efficiency by inducing a heterogeneous drug response in glioma differentiation therapy}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {73}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0316-x}, doi = {10.1186/S12918-016-0316-X}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/SunZZCZYZ16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TanevskiTD16, author = {Jovan Tanevski and Ljupco Todorovski and Saso Dzeroski}, title = {Learning stochastic process-based models of dynamical systems from knowledge and data}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {30}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0273-4}, doi = {10.1186/S12918-016-0273-4}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/TanevskiTD16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ThijssenDHW16, author = {Bram Thijssen and T. M. H. Dijkstra and Tom Heskes and Lodewyk F. A. Wessels}, title = {{BCM:} toolkit for Bayesian analysis of Computational Models using samplers}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {100}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0339-3}, doi = {10.1186/S12918-016-0339-3}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/ThijssenDHW16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TianMK16, author = {Dan Tian and Isaiah Mitchell and Pamela K. Kreeger}, title = {Quantitative analysis of insulin-like growth factor 2 receptor and insulin-like growth factor binding proteins to identify control mechanisms for insulin-like growth factor 1 receptor phosphorylation}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {15}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0263-6}, doi = {10.1186/S12918-016-0263-6}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/TianMK16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TianWGLT16, author = {Zhen Tian and Chunyu Wang and Maozu Guo and Xiaoyan Liu and Zhixia Teng}, title = {An improved method for functional similarity analysis of genes based on Gene Ontology}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {4}, pages = {465--484}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0359-z}, doi = {10.1186/S12918-016-0359-Z}, timestamp = {Wed, 11 Nov 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/TianWGLT16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TorresA16, author = {N{\'{u}}ria Ballber Torres and Claudio Altafini}, title = {Drug combinatorics and side effect estimation on the signed human drug-target network}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {74}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0326-8}, doi = {10.1186/S12918-016-0326-8}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/TorresA16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TruongTK16, author = {Cong{-}Doan Truong and Tien{-}Dzung Tran and Yung{-}Keun Kwon}, title = {{MORO:} a Cytoscape app for relationship analysis between modularity and robustness in large-scale biological networks}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {4}, pages = {521--530}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0363-3}, doi = {10.1186/S12918-016-0363-3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/TruongTK16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TycHHPKK16, author = {Katarzyna M. Tyc and Sanna E. Herwald and Jennifer A. Hogan and Jessica V. Pierce and Edda Klipp and Carol A. Kumamoto}, title = {The game theory of \emph{Candida albicans} colonization dynamics reveals host status-responsive gene expression}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {20}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0268-1}, doi = {10.1186/S12918-016-0268-1}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/TycHHPKK16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ValeroMFHGG16, author = {Edelmira Valero and Hermenegilda Maci{\`{a}} and Ildefonso M. De la Fuente and Jos{\'{e}}{-}Antonio Hern{\'{a}}ndez and Mar{\'{\i}}a{-}Isabel Gonz{\'{a}}lez{-}S{\'{a}}nchez and Francisco Garc{\'{\i}}a{-}Carmona}, title = {Modeling the ascorbate-glutathione cycle in chloroplasts under light/dark conditions}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {11}, year = {2016}, url = {https://doi.org/10.1186/s12918-015-0239-y}, doi = {10.1186/S12918-015-0239-Y}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ValeroMFHGG16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/VuralWG16, author = {Suleyman Vural and Xiaosheng Wang and Chittibabu Guda}, title = {Classification of breast cancer patients using somatic mutation profiles and machine learning approaches}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {{S-3}}, pages = {62}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0306-z}, doi = {10.1186/S12918-016-0306-Z}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/VuralWG16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WallqvistFTYR16, author = {Anders Wallqvist and Xin Fang and Shivendra G. Tewari and Ping Ye and Jaques Reifman}, title = {Metabolic host responses to malarial infection during the intraerythrocytic developmental cycle}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {58}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0291-2}, doi = {10.1186/S12918-016-0291-2}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WallqvistFTYR16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WalshSZRDS16, author = {Jesse R. Walsh and Mary L. Schaeffer and Peifen Zhang and Seung Yon Rhee and Julie A. Dickerson and Taner Z. Sen}, title = {The quality of metabolic pathway resources depends on initial enzymatic function assignments: a case for maize}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {129:1--129:9}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0369-x}, doi = {10.1186/S12918-016-0369-X}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WalshSZRDS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WanABYRAL16, author = {Ying{-}Wooi Wan and Genevera I. Allen and Yulia Baker and Eunho Yang and Pradeep Ravikumar and Matthew Anderson and Zhandong Liu}, title = {{XMRF:} an {R} package to fit Markov Networks to high-throughput genetics data}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {{S-3}}, pages = {69}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0313-0}, doi = {10.1186/S12918-016-0313-0}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WanABYRAL16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WangHXL16, author = {Yin Wang and Tao Huang and Lu Xie and Lei Liu}, title = {Integrative analysis of methylation and transcriptional profiles to predict aging and construct aging specific cross-tissue networks}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {4}, pages = {413--421}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0354-4}, doi = {10.1186/S12918-016-0354-4}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/WangHXL16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WangLM16, author = {Yulin Wang and Na Lu and Hongyu Miao}, title = {Structural identifiability of cyclic graphical models of biological networks with latent variables}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {41}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0287-y}, doi = {10.1186/S12918-016-0287-Y}, timestamp = {Tue, 09 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/WangLM16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WeberDMGND16, author = {Tom Serge Weber and Mark Dukes and Denise C. Miles and Stefan P. Glaser and Shalin H. Naik and Ken R. Duffy}, title = {Site-specific recombinatorics: in situ cellular barcoding with the Cre Lox system}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {43}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0290-3}, doi = {10.1186/S12918-016-0290-3}, timestamp = {Sun, 31 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WeberDMGND16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WilmsC16, author = {Ines Wilms and Christophe Croux}, title = {Robust sparse canonical correlation analysis}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {72}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0317-9}, doi = {10.1186/S12918-016-0317-9}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WilmsC16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WuLCYLL16, author = {Su{-}Juan Wu and Junyi Li and Mushui Cao and Jing Yang and Yi{-}Xue Li and Yuan{-}Yuan Li}, title = {A novel integrated gene coexpression analysis approach reveals a prognostic three-transcription-factor signature for glioma molecular subtypes}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {{S-3}}, pages = {71}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0315-y}, doi = {10.1186/S12918-016-0315-Y}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WuLCYLL16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/XuW16, author = {Rong Xu and QuanQiu Wang}, title = {Towards understanding brain-gut-microbiome connections in Alzheimer's disease}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {{S-3}}, pages = {63}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0307-y}, doi = {10.1186/S12918-016-0307-Y}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/XuW16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YangWYPWWSQLL16, author = {Jing Yang and Su{-}Juan Wu and Shao{-}You Yang and Jia{-}Wei Peng and Shi{-}Nuo Wang and Fu{-}Yan Wang and Yu{-}Xing Song and Ting Qi and Yi{-}Xue Li and Yuan{-}Yuan Li}, title = {DNetDB: The human disease network database based on dysfunctional regulation mechanism}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {36}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0280-5}, doi = {10.1186/S12918-016-0280-5}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/YangWYPWWSQLL16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YuCPJKL16, author = {Hasun Yu and Sungji Choo and Junseok Park and Jinmyung Jung and Yeeok Kang and Doheon Lee}, title = {Prediction of drugs having opposite effects on disease genes in a directed network}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {{S-1}}, pages = {2}, year = {2016}, url = {https://doi.org/10.1186/s12918-015-0243-2}, doi = {10.1186/S12918-015-0243-2}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/YuCPJKL16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YuLFW16, author = {Guo{-}Xian Yu and Wei Luo and Guangyuan Fu and Jun Wang}, title = {Interspecies gene function prediction using semantic similarity}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {4}, pages = {495--507}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0361-5}, doi = {10.1186/S12918-016-0361-5}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/YuLFW16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YuWMG16, author = {Liang Yu and Bingbo Wang and Xiaoke Ma and Lin Gao}, title = {The extraction of drug-disease correlations based on module distance in incomplete human interactome}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {4}, pages = {531--539}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0364-2}, doi = {10.1186/S12918-016-0364-2}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/YuWMG16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YuanLTD16, author = {Huili Yuan and Zhenye Li and Nelson L. S. Tang and Minghua Deng}, title = {A network based covariance test for detecting multivariate eQTL in saccharomyces cerevisiae}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {{S-1}}, pages = {8}, year = {2016}, url = {https://doi.org/10.1186/s12918-015-0245-0}, doi = {10.1186/S12918-015-0245-0}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/YuanLTD16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YueLGZDZ16, author = {Xun Yue and Xing Guo Li and Xin{-}Qi Gao and Xiang Yu Zhao and Yu Xiu Dong and Chao Zhou}, title = {The \emph{Arabidopsis} phytohormone crosstalk network involves a consecutive metabolic route and circular control units of transcription factors that regulate enzyme-encoding genes}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {87}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0333-9}, doi = {10.1186/S12918-016-0333-9}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/YueLGZDZ16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZhangCS16, author = {Wangshu Zhang and Marcelo P. Coba and Fengzhu Sun}, title = {Inference of domain-disease associations from domain-protein, protein-disease and disease-disease relationships}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {{S-1}}, pages = {4}, year = {2016}, url = {https://doi.org/10.1186/s12918-015-0247-y}, doi = {10.1186/S12918-015-0247-Y}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ZhangCS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZhangCZLPZ16, author = {Fan Zhang and Haoting Chen and Li Na Zhao and Hui Liu and Teresa M. Przytycka and Jie Zheng}, title = {Generalized logical model based on network topology to capture the dynamical trends of cellular signaling pathways}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {{S-1}}, pages = {7}, year = {2016}, url = {https://doi.org/10.1186/s12918-015-0249-9}, doi = {10.1186/S12918-015-0249-9}, timestamp = {Wed, 07 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ZhangCZLPZ16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZhangLLLWJZZX16, author = {Hao Zhang and Yanpu Li and Yuanning Liu and Haiming Liu and Hongyu Wang and Wen Jin and Yanmei Zhang and Chao Zhang and Dong Xu}, title = {Role of plant MicroRNA in cross-species regulatory networks of humans}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {60}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0292-1}, doi = {10.1186/S12918-016-0292-1}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/ZhangLLLWJZZX16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZhangLZ16, author = {Fan Zhang and Runsheng Liu and Jie Zheng}, title = {Sig2GRN: a software tool linking signaling pathway with gene regulatory network for dynamic simulation}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {4}, pages = {541--548}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0365-1}, doi = {10.1186/S12918-016-0365-1}, timestamp = {Wed, 30 Nov 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/ZhangLZ16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZhangN16, author = {Shuqin Zhang and Michael K. Ng}, title = {Gene-microRNA network module analysis for ovarian cancer}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {4}, pages = {445--455}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0357-1}, doi = {10.1186/S12918-016-0357-1}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ZhangN16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZhangW0WSLX16, author = {Yaoyun Zhang and Heng{-}Yi Wu and Jun Xu and Jingqi Wang and Ergin Soysal and Lang Li and Hua Xu}, title = {Leveraging syntactic and semantic graph kernels to extract pharmacokinetic drug drug interactions from biomedical literature}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {{S-3}}, pages = {67}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0311-2}, doi = {10.1186/S12918-016-0311-2}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ZhangW0WSLX16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZhaoLHHR16, author = {Zhongming Zhao and Yunlong Liu and Yufei Huang and Kun Huang and Jianhua Ruan}, title = {Advancing Systems Biology in the International Conference on Intelligent Biology and Medicine {(ICIBM)} 2015}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {{S-3}}, pages = {61}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0305-0}, doi = {10.1186/S12918-016-0305-0}, timestamp = {Mon, 03 Jun 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ZhaoLHHR16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZhengHZVLFMCNS16, author = {Yun Zheng and Vandana Hivrale and Xiaotuo Zhang and Babu Valliyodan and Christine Lelandais{-}Bri{\`{e}}re and Andrew D. Farmer and Gregory D. May and Martin Crespi and Henry T. Nguyen and Ramanjulu Sunkar}, title = {Small {RNA} profiles in soybean primary root tips under water deficit}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {{S-5}}, pages = {1--10}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0374-0}, doi = {10.1186/S12918-016-0374-0}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ZhengHZVLFMCNS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZhouN16, author = {Xiaoyuan Zhou and Christine Nardini}, title = {A method for automated pathogenic content estimation with application to rheumatoid arthritis}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {107:1--107:8}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0344-6}, doi = {10.1186/S12918-016-0344-6}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ZhouN16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZouWJTZ16, author = {Quan Zou and Shixiang Wan and Ying Ju and Jijun Tang and Xiangxiang Zeng}, title = {Pretata: predicting {TATA} binding proteins with novel features and dimensionality reduction strategy}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {4}, pages = {401--412}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0353-5}, doi = {10.1186/S12918-016-0353-5}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/ZouWJTZ16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/AbedpourK15, author = {Nima Abedpour and Markus Kollmann}, title = {Resource constrained flux balance analysis predicts selective pressure on the global structure of metabolic networks}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {88}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0232-5}, doi = {10.1186/S12918-015-0232-5}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/AbedpourK15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/AbshagenKHMEWHZ15, author = {Kerstin Abshagen and Matthias K{\"{o}}nig and Andreas Hoppe and Isabell M{\"{u}}ller and Matthias Ebert and Honglei Weng and Hermann{-}Georg Holzh{\"{u}}tter and Ulrich M. Zanger and Johannes G. Bode and Brigitte Vollmar and Maria Thomas and Steven Dooley}, title = {Pathobiochemical signatures of cholestatic liver disease in bile duct ligated mice}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {83}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0229-0}, doi = {10.1186/S12918-015-0229-0}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/AbshagenKHMEWHZ15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/AlaimoBCFGP15, author = {Salvatore Alaimo and Vincenzo Bonnici and Damiano Cancemi and Alfredo Ferro and Rosalba Giugno and Alfredo Pulvirenti}, title = {DT-Web: a web-based application for drug-target interaction and drug combination prediction through domain-tuned network-based inference}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-3}}, pages = {S4}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S3-S4}, doi = {10.1186/1752-0509-9-S3-S4}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/AlaimoBCFGP15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/AndoKH15, author = {Tatsuya Ando and Ryuji Kato and Hiroyuki Honda}, title = {Differential variability and correlation of gene expression identifies key genes involved in neuronal differentiation}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {82}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0231-6}, doi = {10.1186/S12918-015-0231-6}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/AndoKH15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/AzadLK15, author = {A. K. M. Azad and Alfons Lawen and Jonathan M. Keith}, title = {Prediction of signaling cross-talks contributing to acquired drug resistance in breast cancer cells by Bayesian statistical modeling}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {2}, year = {2015}, url = {https://doi.org/10.1186/s12918-014-0135-x}, doi = {10.1186/S12918-014-0135-X}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/AzadLK15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BenderG15, author = {R. Joseph Bender and Feilim Mac Gabhann}, title = {Dysregulation of the vascular endothelial growth factor and semaphorin ligand-receptor families in prostate cancer metastasis}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {55}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0201-z}, doi = {10.1186/S12918-015-0201-Z}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BenderG15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BhargavaHA15, author = {Anuprabha Bhargava and Hanspeter Herzel and Bharath Ananthasubramaniam}, title = {Mining for novel candidate clock genes in the circadian regulatory network}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {78}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0227-2}, doi = {10.1186/S12918-015-0227-2}, timestamp = {Sun, 25 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BhargavaHA15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BianconiBLPCV15, author = {Fortunato Bianconi and Elisa Baldelli and Vienna Ludovini and Emanuel F. Petricoin and Lucio Crin{\`{o}} and Paolo Valigi}, title = {Conditional robustness analysis for fragility discovery and target identification in biochemical networks and in cancer systems biology}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {70}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0216-5}, doi = {10.1186/S12918-015-0216-5}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BianconiBLPCV15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BlanchardL15, author = {Andrew E. Blanchard and Ting Lu}, title = {Bacterial social interactions drive the emergence of differential spatial colony structures}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {59}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0188-5}, doi = {10.1186/S12918-015-0188-5}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BlanchardL15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BoasJMB15, author = {Sonja E. M. Boas and Mar{\'{\i}}a I. Navarro Jimenez and Roeland M. H. Merks and Joke G. Blom}, title = {A global sensitivity analysis approach for morphogenesis models}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {85}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0222-7}, doi = {10.1186/S12918-015-0222-7}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BoasJMB15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BoasM15, author = {Sonja E. M. Boas and Roeland M. H. Merks}, title = {Tip cell overtaking occurs as a side effect of sprouting in computational models of angiogenesis}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {86}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0230-7}, doi = {10.1186/S12918-015-0230-7}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BoasM15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BotmanJRMJK15, author = {Daniel Botman and Fredrik Jansson and Eric R{\"{o}}ttinger and Mark Q. Martindale and Johann de Jong and Jaap A. Kaandorp}, title = {Analysis of a spatial gene expression database for sea anemone Nematostella vectensis during early development}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {63}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0209-4}, doi = {10.1186/S12918-015-0209-4}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BotmanJRMJK15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BrandonHLL15, author = {Madison Brandon and Brad Howard and Christopher Lawrence and Reinhard C. Laubenbacher}, title = {Iron acquisition and oxidative stress response in aspergillus fumigatus}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {19}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0163-1}, doi = {10.1186/S12918-015-0163-1}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BrandonHLL15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/CaiLHGKW15, author = {Hong Cai and Timothy G. Lilburn and Changjin Hong and Jianying Gu and Rui Kuang and Yufeng Wang}, title = {Predicting and exploring network components involved in pathogenesis in the malaria parasite via novel subnetwork alignments}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-4}}, pages = {S1}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S4-S1}, doi = {10.1186/1752-0509-9-S4-S1}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/CaiLHGKW15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/CavaBC15, author = {Claudia Cava and Gloria Bertoli and Isabella Castiglioni}, title = {Integrating genetics and epigenetics in breast cancer: biological insights, experimental, computational methods and therapeutic potential}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {62}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0211-x}, doi = {10.1186/S12918-015-0211-X}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/CavaBC15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Chamard-Jovenin15, author = {Cl{\'{e}}mence Chamard{-}Jovenin and Alain Jung and Amand Chesnel and Joseph Abecassis and St{\'{e}}phane Flament and Sonia Ledrappier and Christine Macabre and Taha Boukhobza and H{\'{e}}l{\`{e}}ne Dumond}, title = {From ER{\(\alpha\)}66 to ER{\(\alpha\)}36: a generic method for validating a prognosis marker of breast tumor progression}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {28}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0178-7}, doi = {10.1186/S12918-015-0178-7}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/Chamard-Jovenin15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChenLLL15, author = {Ye Chen and Cheng Lv and Fangting Li and Tiejun Li}, title = {Distinguishing the rates of gene activation from phenotypic variations}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {29}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0172-0}, doi = {10.1186/S12918-015-0172-0}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChenLLL15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChenLYYL15, author = {Di Chen and Xi Liu and Yiping Yang and Hongjun Yang and Peng Lu}, title = {Systematic synergy modeling: understanding drug synergy from a systems biology perspective}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {56}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0202-y}, doi = {10.1186/S12918-015-0202-Y}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChenLYYL15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChiarugiFHOT15, author = {Davide Chiarugi and Moreno Falaschi and Diana Hermith and Carlos Olarte and Luca Torella}, title = {Modelling non-Markovian dynamics in biochemical reactions}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-3}}, pages = {S8}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S3-S8}, doi = {10.1186/1752-0509-9-S3-S8}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChiarugiFHOT15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChristensenHR15, author = {Carl D. Christensen and Jan{-}Hendrik S. Hofmeyr and Johann M. Rohwer}, title = {Tracing regulatory routes in metabolism using generalised supply-demand analysis}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {89}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0236-1}, doi = {10.1186/S12918-015-0236-1}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChristensenHR15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ColeKHL15, author = {John A. Cole and Lars Kohler and Jamila Hedhli and Zaida Luthey{-}Schulten}, title = {Spatially-resolved metabolic cooperativity within dense bacterial colonies}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {15}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0155-1}, doi = {10.1186/S12918-015-0155-1}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ColeKHL15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/CookOV15, author = {Daniel Cook and Babatunde A. Ogunnaike and Rajanikanth Vadigepalli}, title = {Systems analysis of non-parenchymal cell modulation of liver repair across multiple regeneration modes}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {71}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0220-9}, doi = {10.1186/S12918-015-0220-9}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/CookOV15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/CurrieRGTLBCKYE15, author = {Devin H. Currie and Babu Raman and Christopher M. Gowen and Timothy J. Tschaplinski and Miriam L. Land and Steven D. Brown and Sean F. Covalla and Dawn M. Klingeman and Zamin K. Yang and Nancy L. Engle and Courtney M. Johnson and Miguel Rodriguez and A. Shaw and William R. Kenealy and Lee R. Lynd and Stephen S. Fong and Jonathan R. Mielenz and Brian H. Davison and David A. Hogsett and Christopher D. Herring}, title = {Genome-scale resources for Thermoanaerobacterium saccharolyticum}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {30}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0159-x}, doi = {10.1186/S12918-015-0159-X}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/CurrieRGTLBCKYE15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/CursonsGHPDJC15, author = {Joseph Cursons and Jerry Gao and Daniel G. Hurley and Cristin G. Print and P. Rod Dunbar and Marc Jacobs and Edmund J. Crampin}, title = {Regulation of {ERK-MAPK} signaling in human epidermis}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {41}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0187-6}, doi = {10.1186/S12918-015-0187-6}, timestamp = {Wed, 21 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/CursonsGHPDJC15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/CzerwinskaCBZ15, author = {Urszula Czerwinska and Laurence Calzone and Emmanuel Barillot and Andrei Yu. Zinovyev}, title = {DeDaL: Cytoscape 3 app for producing and morphing data-driven and structure-driven network layouts}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {46}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0189-4}, doi = {10.1186/S12918-015-0189-4}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/CzerwinskaCBZ15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/DanzigerRRSPAB15, author = {Samuel A. Danziger and David J. Reiss and Alexander V. Ratushny and Jennifer J. Smith and Christopher L. Plaisier and John D. Aitchison and Nitin S. Baliga}, title = {Bicluster Sampled Coherence Metric {(BSCM)} provides an accurate environmental context for phenotype predictions}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-2}}, pages = {S1}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S2-S1}, doi = {10.1186/1752-0509-9-S2-S1}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/DanzigerRRSPAB15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Davila-Velderrain15, author = {Jose Davila{-}Velderrain and Carlos Villarreal and Elena R. {\'{A}}lvarez{-}Buylla}, title = {Reshaping the epigenetic landscape during early flower development: induction of attractor transitions by relative differences in gene decay rates}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {20}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0166-y}, doi = {10.1186/S12918-015-0166-Y}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Davila-Velderrain15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/DengGW15, author = {Yue Deng and Lin Gao and Bingbo Wang}, title = {Erratum to: ppiPre: predicting protein-protein interactions by combining heterogeneous features}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {50}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0196-5}, doi = {10.1186/S12918-015-0196-5}, timestamp = {Wed, 20 Jul 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/DengGW15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/DexterXGM15, author = {Joseph P. Dexter and Ping Xu and Jeremy Gunawardena and Megan N. McClean}, title = {Robust network structure of the Sln1-Ypd1-Ssk1 three-component phospho-relay prevents unintended activation of the {HOG} {MAPK} pathway in Saccharomyces cerevisiae}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {17}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0158-y}, doi = {10.1186/S12918-015-0158-Y}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/DexterXGM15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/DragerZKREPZ15, author = {Andreas Dr{\"{a}}ger and Daniel C. Zielinski and Roland Keller and Matthias Rall and Johannes Eichner and Bernhard O. Palsson and Andreas Zell}, title = {SBMLsqueezer 2: context-sensitive creation of kinetic equations in biochemical networks}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {68}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0212-9}, doi = {10.1186/S12918-015-0212-9}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/DragerZKREPZ15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ErdrichSK15, author = {Philipp Erdrich and Ralf Steuer and Steffen Klamt}, title = {An algorithm for the reduction of genome-scale metabolic network models to meaningful core models}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {48}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0191-x}, doi = {10.1186/S12918-015-0191-X}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ErdrichSK15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/FaustinoWGMTP15, author = {Randolph Faustino and Saranya Wyles and Jody Groenendyk and Marek Michalak and Andre Terzic and Carmen Perez{-}Terzic}, title = {Systems biology surveillance decrypts pathological transcriptome remodeling}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {36}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0177-8}, doi = {10.1186/S12918-015-0177-8}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/FaustinoWGMTP15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/FearASDTNM15, author = {Justin M. Fear and Michelle N. Arbeitman and Matthew Salomon and Justin Dalton and John Tower and Sergey V. Nuzhdin and Lauren M. McIntyre}, title = {The wright stuff: reimagining path analysis reveals novel components of the sex determination hierarchy in drosophila melanogaster}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {53}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0200-0}, doi = {10.1186/S12918-015-0200-0}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/FearASDTNM15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/FeliuW15, author = {Elisenda Feliu and Carsten Wiuf}, title = {Finding the positive feedback loops underlying multi-stationarity}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {22}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0164-0}, doi = {10.1186/S12918-015-0164-0}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/FeliuW15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/FieldDCSAMGO15, author = {Sarah L. Field and Tathagata Dasgupta and Michele Cummings and Richard S. Savage and Julius Adebayo and Hema McSara and Jeremy Gunawardena and Nicolas M. Orsi}, title = {Bayesian modeling suggests that {IL-12} (p40), {IL-13} and {MCP-1} drive murine cytokine networks \emph{in vivo}}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {76}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0226-3}, doi = {10.1186/S12918-015-0226-3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/FieldDCSAMGO15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/FornariBHBACCB15, author = {Chiara Fornari and Gianfranco Balbo and Sami M. Halawani and Omar M. Ba{-}Rukab and Ab Rahman Ahmad and Raffaele A. Calogero and Francesca Cordero and Marco Beccuti}, title = {A versatile mathematical work-flow to explore how Cancer Stem Cell fate influences tumor progression}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-3}}, pages = {S1}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S3-S1}, doi = {10.1186/1752-0509-9-S3-S1}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/FornariBHBACCB15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GaborB15, author = {Attila G{\'{a}}bor and Julio R. Banga}, title = {Robust and efficient parameter estimation in dynamic models of biological systems}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {74}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0219-2}, doi = {10.1186/S12918-015-0219-2}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GaborB15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GaleotaGCBC15, author = {Eugenia Galeota and Caius Gavrila and Filippo Castiglione and Massimo Bernaschi and Gianni Cesareni}, title = {The hierarchical organization of natural protein interaction networks confers self-organization properties on pseudocells}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-3}}, pages = {S3}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S3-S3}, doi = {10.1186/1752-0509-9-S3-S3}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GaleotaGCBC15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GarayDG15, author = {Christopher Garay and Jonathan M. Dreyfuss and James E. Galagan}, title = {Metabolic modeling predicts metabolite changes in Mycobacterium tuberculosis}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {57}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0206-7}, doi = {10.1186/S12918-015-0206-7}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GarayDG15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Garcia-Albornoz15, author = {Manuel Garcia{-}Albornoz and Jens Nielsen}, title = {Finding directionality and gene-disease predictions in disease associations}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {35}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0184-9}, doi = {10.1186/S12918-015-0184-9}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Garcia-Albornoz15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GhanbariLV15, author = {Mahsa Ghanbari and Julia Lasserre and Martin Vingron}, title = {Reconstruction of gene networks using prior knowledge}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {84}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0233-4}, doi = {10.1186/S12918-015-0233-4}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GhanbariLV15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GlotovTVPDSIAMZ15, author = {Andrey S. Glotov and Evgeny S. Tiys and Elena S. Vashukova and Vladimir S. Pakin and Pavel S. Demenkov and Olga V. Saik and Timofey V. Ivanisenko and Olga N. Arzhanova and Elena V. Mozgovaya and Marina S. Zainulina and Nikolay A. Kolchanov and Vladislav S. Baranov and Vladimir A. Ivanisenko}, title = {Molecular association of pathogenetic contributors to pre-eclampsia (pre-eclampsia associome)}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-2}}, pages = {S4}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S2-S4}, doi = {10.1186/1752-0509-9-S2-S4}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GlotovTVPDSIAMZ15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HasdemirHS15, author = {Dicle Hasdemir and Huub C. J. Hoefsloot and Age K. Smilde}, title = {Validation and selection of {ODE} based systems biology models: how to arrive at more reliable decisions}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {32}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0180-0}, doi = {10.1186/S12918-015-0180-0}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HasdemirHS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HasegawaMYSMIA15, author = {Takanori Hasegawa and Tomoya Mori and Rui Yamaguchi and Teppei Shimamura and Satoru Miyano and Seiya Imoto and Tatsuya Akutsu}, title = {Genomic data assimilation using a higher moment filtering technique for restoration of gene regulatory networks}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {14}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0154-2}, doi = {10.1186/S12918-015-0154-2}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HasegawaMYSMIA15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HattoriYW15, author = {Yuya Hattori and Akinari Yokoya and Ritsuko Watanabe}, title = {Cellular automaton-based model for radiation-induced bystander effects}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {90}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0235-2}, doi = {10.1186/S12918-015-0235-2}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HattoriYW15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HsiehTCTKHN15, author = {Wen{-}Tsong Hsieh and Ke{-}Rung Tzeng and Jin{-}Shuei Ciou and Jeffrey J. P. Tsai and Nilubon Kurubanjerdjit and Chien{-}Hung Huang and Ka{-}Lok Ng}, title = {Transcription factor and microRNA-regulated network motifs for cancer and signal transduction networks}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-1}}, pages = {S5}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S1-S5}, doi = {10.1186/1752-0509-9-S1-S5}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HsiehTCTKHN15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HuangSZZXS15, author = {Liang{-}Chin Huang and Ergin Soysal and W. Jim Zheng and Zhongming Zhao and Hua Xu and Jingchun Sun}, title = {A weighted and integrated drug-target interactome: drug repurposing for schizophrenia as a use case}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-4}}, pages = {S2}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S4-S2}, doi = {10.1186/1752-0509-9-S4-S2}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HuangSZZXS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HuangYLZ15, author = {Lifang Huang and Zhanjiang Yuan and Peijiang Liu and Tianshou Zhou}, title = {Effects of promoter leakage on dynamics of gene expression}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {16}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0157-z}, doi = {10.1186/S12918-015-0157-Z}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HuangYLZ15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/IntosalmiARMCLS15, author = {Jukka Intosalmi and Helena Ahlfors and Sini Rautio and Henrik Mannerstr{\"{o}}m and Zhi Jane Chen and Riitta Lahesmaa and Brigitta Stockinger and Harri L{\"{a}}hdesm{\"{a}}ki}, title = {Analyzing Th17 cell differentiation dynamics using a novel integrative modeling framework for time-course {RNA} sequencing data}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {81}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0223-6}, doi = {10.1186/S12918-015-0223-6}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/IntosalmiARMCLS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/IvanisenkoSITID15, author = {Vladimir A. Ivanisenko and Olga V. Saik and Nikita V. Ivanisenko and Evgeny S. Tiys and Timofey V. Ivanisenko and Pavel S. Demenkov and Nikolay A. Kolchanov}, title = {ANDSystem: an Associative Network Discovery System for automated literature mining in the field of biology}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-2}}, pages = {S2}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S2-S2}, doi = {10.1186/1752-0509-9-S2-S2}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/IvanisenkoSITID15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/JeongKWS15, author = {Hyun{-}hwan Jeong and So Kim and Kyubum Wee and Kyung{-}Ah Sohn}, title = {Investigating the utility of clinical outcome-guided mutual information network in network-based Cox regression}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-1}}, pages = {S8}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S1-S8}, doi = {10.1186/1752-0509-9-S1-S8}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/JeongKWS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/JeongY15, author = {Hyundoo Jeong and Byung{-}Jun Yoon}, title = {Accurate multiple network alignment through context-sensitive random walk}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-1}}, pages = {S7}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S1-S7}, doi = {10.1186/1752-0509-9-S1-S7}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/JeongY15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/JohnstonSCMS15, author = {Stuart Johnston and Esha Shah and Lisa Chopin and D. L. Sean McElwain and Matthew J. Simpson}, title = {Estimating cell diffusivity and cell proliferation rate by interpreting IncuCyte ZOOM{\texttrademark} assay data using the Fisher-Kolmogorov model}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {38}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0182-y}, doi = {10.1186/S12918-015-0182-Y}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/JohnstonSCMS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KarlssonJDCKC15, author = {Markus Karlsson and David Janz{\'{e}}n and Lucia Durrieu and Alejandro Colman{-}Lerner and Maria Kjellsson and Gunnar Cedersund}, title = {Nonlinear mixed-effects modelling for single cell estimation: when, why, and how to use it}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {52}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0203-x}, doi = {10.1186/S12918-015-0203-X}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KarlssonJDCKC15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KavscekBMN15, author = {Martin Kavscek and Govindprasad Bhutada and Tobias Madl and Klaus Natter}, title = {Optimization of lipid production with a genome-scale model of \emph{Yarrowia lipolytica}}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {72}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0217-4}, doi = {10.1186/S12918-015-0217-4}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/KavscekBMN15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KimJB15, author = {Jae Kyoung Kim and Kresimir Josic and Matthew R. Bennett}, title = {The relationship between stochastic and deterministic quasi-steady state approximations}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {87}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0218-3}, doi = {10.1186/S12918-015-0218-3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KimJB15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KittasBSGT15, author = {Aristotelis Kittas and Am{\'{e}}lie Barozet and Jekaterina Sereshti and Niels Grabe and Sophia Tsoka}, title = {CytoASP: a Cytoscape app for qualitative consistency reasoning, prediction and repair in biological networks}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {34}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0179-6}, doi = {10.1186/S12918-015-0179-6}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KittasBSGT15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KolarWMKWZ15, author = {Katja Kolar and Hanna M. Wischhusen and Konrad M{\"{u}}ller and Maria Karlsson and Wilfried Weber and Matias D. Zurbriggen}, title = {A synthetic mammalian network to compute population borders based on engineered reciprocal cell-cell communication}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {97}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0252-1}, doi = {10.1186/S12918-015-0252-1}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/KolarWMKWZ15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KryvenRS15, author = {Ivan Kryven and Susanna R{\"{o}}blitz and Christof Sch{\"{u}}tte}, title = {Solution of the chemical master equation by radial basis functions approximation with interface tracking}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {67}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0210-y}, doi = {10.1186/S12918-015-0210-Y}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KryvenRS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LakshmananKCLL15, author = {Meiyappan Lakshmanan and Tae Yong Kim and Bevan Kai{-}Sheng Chung and Sang Yup Lee and Dong{-}Yup Lee}, title = {Flux-sum analysis identifies metabolite targets for strain improvement}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {73}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0198-3}, doi = {10.1186/S12918-015-0198-3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LakshmananKCLL15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiV15, author = {Pu Li and Quoc Dong Vu}, title = {A simple method for identifying parameter correlations in partially observed linear dynamic models}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {92}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0234-3}, doi = {10.1186/S12918-015-0234-3}, timestamp = {Mon, 12 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiV15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LienNSNB15, author = {Stina K. Lien and Sebastian Niedenf{\"{u}}hr and H{\aa}vard Sletta and Katharina N{\"{o}}h and Per Bruheim}, title = {Fluxome study of Pseudomonas fluorescens reveals major reorganisation of carbon flux through central metabolic pathways in response to inactivation of the anti-sigma factor MucA}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {6}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0148-0}, doi = {10.1186/S12918-015-0148-0}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LienNSNB15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ManyamBB15, author = {Ganiraju Manyam and Aybike Birerdinc and Ancha V. Baranova}, title = {{KPP:} {KEGG} Pathway Painter}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-2}}, pages = {S3}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S2-S3}, doi = {10.1186/1752-0509-9-S2-S3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ManyamBB15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MarinGMKSJSCS15, author = {Traci L. Marin and Brendan Gongol and Marcy Martin and Stephanie J. King and Lemar Smith and David A. Johnson and Shankar Subramaniam and Shu Chien and John Shyy}, title = {Identification of AMP-activated protein kinase targets by a consensus sequence search of the proteome}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {13}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0156-0}, doi = {10.1186/S12918-015-0156-0}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MarinGMKSJSCS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MarmiessePC15, author = {Lucas Marmiesse and R{\'{e}}mi Peyraud and Ludovic Cottret}, title = {FlexFlux: combining metabolic flux and regulatory network analyses}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {93}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0238-z}, doi = {10.1186/S12918-015-0238-Z}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/MarmiessePC15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MillardPM15, author = {Pierre Millard and Jean{-}Charles Portais and Pedro Mendes}, title = {Impact of kinetic isotope effects in isotopic studies of metabolic systems}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {64}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0213-8}, doi = {10.1186/S12918-015-0213-8}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MillardPM15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MishraBCZZ15, author = {Shital K. Mishra and Sourav S. Bhowmick and Huey{-}Eng Chua and Fan Zhang and Jie Zheng}, title = {Computational cell fate modelling for discovery of rewiring in apoptotic network for enhanced cancer drug sensitivity}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-1}}, pages = {S4}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S1-S4}, doi = {10.1186/1752-0509-9-S1-S4}, timestamp = {Wed, 30 Nov 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/MishraBCZZ15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MitchellGKSKHPS15, author = {Christopher J. Mitchell and Derese Getnet and Min Sik Kim and Srinivas Manda Srikanth and Praveen Kumar and Tai{-}Chung Huang and Sneha M. Pinto and Nirujogi Raja Sekhar and Mio Iwasaki and Patrick G. Shaw and Xinyan Wu and Jun Zhong and Raghothama Chaerkady and Arivusudar Marimuthu and Babylakshmi Muthusamy and Nandini A. Sahasrabuddhe and Rajesh Raju and Caitlyn Bowman and Ludmila V. Danilova and Jevon Cutler and Dhanashree S. Kelkar and Charles G. Drake and T. S. Keshava Prasad and Luigi Marchionni and Peter N. Murakami and Alan F. Scott and Leming Shi and Jean Thierry{-}Mieg and Danielle Thierry{-}Mieg and Rafael A. Irizarry and Leslie Cope and Yasushi Ishihama and Charles Wang and Harsha Gowda and Akhilesh Pandey}, title = {A multi-omic analysis of human na{\"{\i}}ve {CD4+} {T} cells}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {75}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0225-4}, doi = {10.1186/S12918-015-0225-4}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MitchellGKSKHPS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MoTZL15, author = {Wenjuan Mo and Chao Tong and Yan Zhang and Hong Lu}, title = {microRNAs' differential regulations mediate the progress of Human Papillomavirus (HPV)-induced Cervical Intraepithelial Neoplasia {(CIN)}}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {4}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0145-3}, doi = {10.1186/S12918-015-0145-3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MoTZL15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MohammadiSSG15, author = {Shahin Mohammadi and Baharak Saberidokht and Shankar Subramaniam and Ananth Grama}, title = {Scope and limitations of yeast as a model organism for studying human tissue-specific pathways}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {96}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0253-0}, doi = {10.1186/S12918-015-0253-0}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MohammadiSSG15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MoriFKAK15, author = {Tomoya Mori and Max Fl{\"{o}}ttmann and Marcus Krantz and Tatsuya Akutsu and Edda Klipp}, title = {Stochastic simulation of Boolean rxncon models: towards quantitative analysis of large signaling networks}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {45}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0193-8}, doi = {10.1186/S12918-015-0193-8}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MoriFKAK15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/NienaltowskiWLK15, author = {Karol Nienaltowski and Michal Wlodarczyk and Tomasz Lipniacki and Michal Komorowski}, title = {Clustering reveals limits of parameter identifiability in multi-parameter models of biochemical dynamics}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {65}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0205-8}, doi = {10.1186/S12918-015-0205-8}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/NienaltowskiWLK15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/OtaMOT15, author = {Takahide Ota and Masayo Maeda and Mayumi Okamoto and Masaaki Tatsuka}, title = {Positive regulation of Rho GTPase activity by RhoGDIs as a result of their direct interaction with GAPs}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {3}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0143-5}, doi = {10.1186/S12918-015-0143-5}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/OtaMOT15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PadiQ15, author = {Megha Padi and John Quackenbush}, title = {Integrating transcriptional and protein interaction networks to prioritize condition-specific master regulators}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {80}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0228-1}, doi = {10.1186/S12918-015-0228-1}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PadiQ15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PalmisanoHWJTS15, author = {Alida Palmisano and Stefan Hoops and Layne T. Watson and Thomas C. Jones Jr and John J. Tyson and Clifford A. Shaffer}, title = {JigCell Run Manager {(JC-RM):} a tool for managing large sets of biochemical model parametrizations}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {95}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0237-0}, doi = {10.1186/S12918-015-0237-0}, timestamp = {Sat, 27 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PalmisanoHWJTS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ParadisiAC15, author = {Paolo Paradisi and Paolo Allegrini and Davide Chiarugi}, title = {A renewal model for the emergence of anomalous solute crowding in liposomes}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-3}}, pages = {S7}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S3-S7}, doi = {10.1186/1752-0509-9-S3-S7}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ParadisiAC15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PenagaricanoVSB15, author = {Francisco Pe{\~{n}}agaricano and Bruno Valente and Juan P. Steibel and Ronald O. Bates and Catherine W. Ernst and Hasan Khatib and Guilherme J. M. Rosa}, title = {Exploring causal networks underlying fat deposition and muscularity in pigs through the integration of phenotypic, genotypic and transcriptomic data}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {58}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0207-6}, doi = {10.1186/S12918-015-0207-6}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PenagaricanoVSB15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Perez-LanderoSM15, author = {Sergio P{\'{e}}rez{-}Landero and Santiago Sandoval{-}Motta and Claudia Mart{\'{\i}}nez{-}Anaya and Runying Yang and Jorge Folch{-}Mallol and Luz Mart{\'{\i}}nez and Larissa Ventura and Karina Guill{\'{e}}n{-}Navarro and Maximino Aldana{-}Gonz{\'{a}}lez and Jorge Nieto{-}Sotelo}, title = {Complex regulation of Hsf1-Skn7 activities by the catalytic subunits of {PKA} in Saccharomyces cerevisiae: experimental and computational evidences}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {42}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0185-8}, doi = {10.1186/S12918-015-0185-8}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Perez-LanderoSM15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PienaarDLK15, author = {Elsje Pienaar and V{\'{e}}ronique Dartois and Jennifer J. Linderman and Denise E. Kirschner}, title = {\emph{In silico} evaluation and exploration of antibiotic tuberculosis treatment regimens}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {79}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0221-8}, doi = {10.1186/S12918-015-0221-8}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PienaarDLK15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PolitiPZM15, author = {Nicol{\`{o}} Politi and Lorenzo Pasotti and Susanna Zucca and Paolo Magni}, title = {Modelling the effects of cell-to-cell variability on the output of interconnected gene networks in bacterial populations}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-3}}, pages = {S6}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S3-S6}, doi = {10.1186/1752-0509-9-S3-S6}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PolitiPZM15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PulvirentiGDPMG15, author = {Alfredo Pulvirenti and Rosalba Giugno and Rosario Distefano and Giuseppe Pigola and Misael Mongiov{\`{\i}} and Girolamo Giudice and Vera Vendramin and Alessandro Lombardo and Federica Cattonaro and Alfredo Ferro}, title = {A knowledge base for Vitis vinifera functional analysis}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-3}}, pages = {S5}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S3-S5}, doi = {10.1186/1752-0509-9-S3-S5}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PulvirentiGDPMG15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ReedGHN15, author = {Michael Reed and Mary Gamble and Megan Hall and H. Nijhout}, title = {Mathematical analysis of the regulation of competing methyltransferases}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {69}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0215-6}, doi = {10.1186/S12918-015-0215-6}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ReedGHN15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Reyes-GibbyYWYS15, author = {Cielito Reyes{-}Gibby and Christine Yuan and Jian Wang and Sai{-}Ching Yeung and Sanjay Shete}, title = {Gene network analysis shows immune-signaling and {ERK1/2} as novel genetic markers for multiple addiction phenotypes: alcohol, smoking and opioid addiction}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {25}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0167-x}, doi = {10.1186/S12918-015-0167-X}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Reyes-GibbyYWYS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/RickettPHZKBM15, author = {Lydia M. Rickett and Nick Pullen and Matthew Hartley and Cyril Zipfel and Sophien Kamoun and J{\'{o}}zsef Baranyi and Richard J. Morris}, title = {Incorporating prior knowledge improves detection of differences in bacterial growth rate}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {60}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0204-9}, doi = {10.1186/S12918-015-0204-9}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/RickettPHZKBM15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SabetianS15, author = {Soudabeh Sabetian and Mohd Shahir Shamsir}, title = {Identification of putative drug targets for human sperm-egg interaction defect using protein network approach}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {37}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0186-7}, doi = {10.1186/S12918-015-0186-7}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SabetianS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Sands15, author = {Tim Sands}, title = {Annual acknowledgement of reviewers}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {7}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0150-6}, doi = {10.1186/S12918-015-0150-6}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Sands15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SchultzQ15, author = {Andr{\'{e}} Schultz and Amina A. Qutub}, title = {Predicting internal cell fluxes at sub-optimal growth}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {18}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0153-3}, doi = {10.1186/S12918-015-0153-3}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/SchultzQ15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ShahzadMC15, author = {Khuram Shahzad and Jay E. Mittenthal and Gustavo Caetano{-}Anoll{\'{e}}s}, title = {The organization of domains in proteins obeys Menzerath-Altmann's law of language}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {44}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0192-9}, doi = {10.1186/S12918-015-0192-9}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/ShahzadMC15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Sharifi-ZarchiT15, author = {Ali Sharifi{-}Zarchi and Mehdi Totonchi and Keynoush Khaloughi and Razieh Karamzadeh and Marcos J. Ara{\'{u}}zo{-}Bravo and Hossein Baharvand and Ruzbeh Tusserkani and Hamid Pezeshk and Hamidreza Chitsaz and Mehdi Sadeghi}, title = {Increased robustness of early embryogenesis through collective decision-making by key transcription factors}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {23}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0169-8}, doi = {10.1186/S12918-015-0169-8}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Sharifi-ZarchiT15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ShimodaSOIA15, author = {Takehiro Shimoda and Shuji Suzuki and Masahito Ohue and Takashi Ishida and Yutaka Akiyama}, title = {Protein-protein docking on hardware accelerators: comparison of {GPU} and {MIC} architectures}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-1}}, pages = {S6}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S1-S6}, doi = {10.1186/1752-0509-9-S1-S6}, timestamp = {Mon, 21 Mar 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/ShimodaSOIA15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SimoesDWE15, author = {Ricardo de Matos Simoes and Sabine Dalleau and Kate E. Williamson and Frank Emmert{-}Streib}, title = {Urothelial cancer gene regulatory networks inferred from large-scale RNAseq, Bead and Oligo gene expression data}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {21}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0165-z}, doi = {10.1186/S12918-015-0165-Z}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SimoesDWE15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SinCV15, author = {Celine Sin and Davide Chiarugi and Angelo Valleriani}, title = {Single-molecule modeling of mRNA degradation by miRNA: Lessons from data}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-3}}, pages = {S2}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S3-S2}, doi = {10.1186/1752-0509-9-S3-S2}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/SinCV15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SokolenkoA15, author = {Stanislav Sokolenko and Marc Aucoin}, title = {A correction method for systematic error in \({}^{\mbox{1}}\) {H-NMR} time-course data validated through stochastic cell culture simulation}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {51}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0197-4}, doi = {10.1186/S12918-015-0197-4}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SokolenkoA15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SongPLA15, author = {Ruijie Song and Weilin Peng and Ping Liu and Murat Acar}, title = {A cell size- and cell cycle-aware stochastic model for predicting time-dynamic gene network activity in individual cells}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {91}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0240-5}, doi = {10.1186/S12918-015-0240-5}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SongPLA15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SridharanUHL15, author = {Gautham Vivek Sridharan and Ehsan Ullah and Soha Hassoun and Kyongbum Lee}, title = {Discovery of substrate cycles in large scale metabolic networks using hierarchical modularity}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {5}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0146-2}, doi = {10.1186/S12918-015-0146-2}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/SridharanUHL15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/StrasserFTM15, author = {Michael K. Strasser and Justin Feigelman and Fabian J. Theis and Carsten Marr}, title = {Inference of spatiotemporal effects on cellular state transitions from time-lapse microscopy}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {61}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0208-5}, doi = {10.1186/S12918-015-0208-5}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/StrasserFTM15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TajparastF15, author = {Mohammad Tajparast and Dominic Frigon}, title = {Genome-scale metabolic model of Rhodococcus jostii {RHA1} (iMT1174) to study the accumulation of storage compounds during nitrogen-limited condition}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {43}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0190-y}, doi = {10.1186/S12918-015-0190-Y}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/TajparastF15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TanevskiTKD15, author = {Jovan Tanevski and Ljupco Todorovski and Yannis Kalaidzidis and Saso Dzeroski}, title = {Domain-specific model selection for structural identification of the Rab5-Rab7 dynamics in endocytosis}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {31}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0175-x}, doi = {10.1186/S12918-015-0175-X}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/TanevskiTKD15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TendlerMA15, author = {Avichai Tendler and Avraham E. Mayo and Uri Alon}, title = {Evolutionary tradeoffs, Pareto optimality and the morphology of ammonite shells}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {12}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0149-z}, doi = {10.1186/S12918-015-0149-Z}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/TendlerMA15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TripathiFCBBTKL15, author = {Sushil Tripathi and {\AA}smund Flobak and Konika Chawla and Ana{\"{\i}}s Baudot and Torunn Bruland and Liv Thommesen and Martin Kuiper and Astrid L{\ae}greid}, title = {The gastrin and cholecystokinin receptors mediated signaling network: a scaffold for data analysis and new hypotheses on regulatory mechanisms}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {40}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0181-z}, doi = {10.1186/S12918-015-0181-Z}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/TripathiFCBBTKL15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TsaiLLW15, author = {Kun{-}Nan Tsai and Shu{-}Hsi Lin and Wei{-}Chung Liu and Daryi Wang}, title = {Inferring microbial interaction network from microbiome data using {RMN} algorithm}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {54}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0199-2}, doi = {10.1186/S12918-015-0199-2}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/TsaiLLW15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/UdathaTSOAP15, author = {D. B. R. K. Gupta Udatha and Evangelos Topakas and Margarita Salazar and Lisbeth Olsson and Mikael R. Andersen and Gianni Panagiotou}, title = {Deciphering the signaling mechanisms of the plant cell wall degradation machinery in \emph{Aspergillus oryzae}}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {77}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0224-5}, doi = {10.1186/S12918-015-0224-5}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/UdathaTSOAP15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/VillaverdeHSB0C15, author = {Alejandro Fern{\'{a}}ndez Villaverde and David Henriques and Kieran Smallbone and Sophia Bongard and Joachim Schmid and Damjan Cicin{-}Sain and Anton Crombach and Julio Saez{-}Rodriguez and Klaus Mauch and Eva Balsa{-}Canto and Pedro Mendes and Johannes Jaeger and Julio R. Banga}, title = {BioPreDyn-bench: a suite of benchmark problems for dynamic modelling in systems biology}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {8}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0144-4}, doi = {10.1186/S12918-015-0144-4}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/VillaverdeHSB0C15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WangCM15, author = {Zichen Wang and Neil R. Clark and Avi Ma'ayan}, title = {Dynamics of the discovery process of protein-protein interactions from low content studies}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {26}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0173-z}, doi = {10.1186/S12918-015-0173-Z}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WangCM15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WangKW15, author = {Qing Wang and David J. Klinke II and Zhijun Wang}, title = {{CD8} \({}^{\mbox{+}}\) {T} cell response to adenovirusvaccination and subsequent suppression of tumor growth: modeling, simulation and analysis}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {27}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0168-9}, doi = {10.1186/S12918-015-0168-9}, timestamp = {Tue, 18 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WangKW15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WangLLDH15, author = {Caihua Wang and Juan Liu and Fei Luo and Zixing Deng and Qian{-}Nan Hu}, title = {Predicting target-ligand interactions using protein ligand-binding site and ligand substructures}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-1}}, pages = {S2}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S1-S2}, doi = {10.1186/1752-0509-9-S1-S2}, timestamp = {Tue, 21 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WangLLDH15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WangLLLZJYLGZWW15, author = {Li{-}Ying Wang and Jun Liu and Yuan Li and Bing Li and Yingying Zhang and Zhi{-}Wei Jing and Ya{-}Nan Yu and Hai{-}Xia Li and Shan{-}Shan Guo and Yi{-}Jun Zhao and Zhong Wang and Yongyan Wang}, title = {Time-dependent variation of pathways and networks in a 24-hour window after cerebral ischemia-reperfusion injury}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {11}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0152-4}, doi = {10.1186/S12918-015-0152-4}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WangLLLZJYLGZWW15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WangYPLJMY15, author = {Likun Wang and Luhe Yang and Zuohan Peng and Dan Lu and Yan Jin and Michael McNutt and Yuxin Yin}, title = {cisPath: an R/Bioconductor package for cloud users for visualization and management of functional protein interaction networks}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-1}}, pages = {S1}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S1-S1}, doi = {10.1186/1752-0509-9-S1-S1}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WangYPLJMY15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WeberHOHR15, author = {Patrick Weber and Mariana Hornjik and Monilola A. Olayioye and Angelika Hausser and Nicole Radde}, title = {A computational model of {PKD} and {CERT} interactions at the trans-Golgi network of mammalian cells}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {9}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0147-1}, doi = {10.1186/S12918-015-0147-1}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WeberHOHR15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WieczorekMFGZI15, author = {Jakob Wieczorek and Rahuman S. Malik{-}Sheriff and Yessica Fermin and Hern{\'{a}}n E. Grecco and Eli Zamir and Katja Ickstadt}, title = {Uncovering distinct protein-network topologies in heterogeneous cell populations}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {24}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0170-2}, doi = {10.1186/S12918-015-0170-2}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WieczorekMFGZI15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WolstencroftOKN15, author = {Katherine Wolstencroft and Stuart Owen and Olga Krebs and Quyen Nguyen and Natalie J. Stanford and Martin Golebiewski and Andreas Weidemann and Meik Bittkowski and Lihua An and David Shockley and Jacky L. Snoep and Wolfgang M{\"{u}}ller and Carole A. Goble}, title = {{SEEK:} a systems biology data and model management platform}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {33}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0174-y}, doi = {10.1186/S12918-015-0174-Y}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WolstencroftOKN15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WronowskaCNG15, author = {Weronika Wronowska and Agata Charzynska and Karol Nienaltowski and Anna Gambin}, title = {Computational modeling of sphingolipid metabolism}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {47}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0176-9}, doi = {10.1186/S12918-015-0176-9}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WronowskaCNG15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WuWLYLS15, author = {Qingyao Wu and Zhenyu Wang and Chunshan Li and Yunming Ye and Yueping Li and Ning Sun}, title = {Protein functional properties prediction in sparsely-label {PPI} networks through regularized non-negative matrix factorization}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-1}}, pages = {S9}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S1-S9}, doi = {10.1186/1752-0509-9-S1-S9}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WuWLYLS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YeXCCCL15, author = {Chao Ye and Nan Xu and Haiqin Chen and Yong Q. Chen and Wei Chen and Liming Liu}, title = {Reconstruction and analysis of a genome-scale metabolic model of the oleaginous fungus Mortierella alpina}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {1}, year = {2015}, url = {https://doi.org/10.1186/s12918-014-0137-8}, doi = {10.1186/S12918-014-0137-8}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/YeXCCCL15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YinGMGS15, author = {Weiwei Yin and Swetha Garimalla and Alberto Moreno and Mary R. Galinski and Mark P. Styczynski}, title = {A tree-like Bayesian structure learning algorithm for small-sample datasets from complex biological model systems}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {49}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0194-7}, doi = {10.1186/S12918-015-0194-7}, timestamp = {Wed, 17 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/YinGMGS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YousefSSSHK15, author = {Kaveh Yousef and Adam Streck and Christof Sch{\"{u}}tte and Heike Siebert and Regine Hengge and Max von Kleist}, title = {Logical-continuous modelling of post-translationally regulated bistability of curli fiber expression in Escherichia coli}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {39}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0183-x}, doi = {10.1186/S12918-015-0183-X}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/YousefSSSHK15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YousofshahiMWLH15, author = {Mona Yousofshahi and Sara Manteiga and Charmian Wu and Kyongbum Lee and Soha Hassoun}, title = {{PROXIMAL:} a method for Prediction of Xenobiotic Metabolism}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {94}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0241-4}, doi = {10.1186/S12918-015-0241-4}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/YousofshahiMWLH15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YuZDG15, author = {Guo{-}Xian Yu and Hailong Zhu and Carlotta Domeniconi and Maozu Guo}, title = {Integrating multiple networks for protein function prediction}, journal = {{BMC} Syst. Biol.}, volume = {9}, number = {{S-1}}, pages = {S3}, year = {2015}, url = {https://doi.org/10.1186/1752-0509-9-S1-S3}, doi = {10.1186/1752-0509-9-S1-S3}, timestamp = {Thu, 12 Nov 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/YuZDG15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZhangKD15, author = {Weiruo Zhang and Ritesh Kolte and David L. Dill}, title = {Towards in vivo estimation of reaction kinetics using high-throughput metabolomics data: a maximum likelihood approach}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {66}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0214-7}, doi = {10.1186/S12918-015-0214-7}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ZhangKD15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZhukovaS15, author = {Anna Zhukova and David James Sherman}, title = {Mimoza: web-based semantic zooming and navigation in metabolic networks}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {10}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0151-5}, doi = {10.1186/S12918-015-0151-5}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ZhukovaS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/AbateZFAWFLIIR14, author = {Francesco Abate and Sakellarios Zairis and Elisa Ficarra and Andrea Acquaviva and Chris H. Wiggins and Veronique Frattini and Anna Lasorella and Antonio Iavarone and Giorgio Inghirami and Raul Rabadan}, title = {Pegasus: a comprehensive annotation and prediction tool for detection of driver gene fusions in cancer}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {97}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0097-z}, doi = {10.1186/S12918-014-0097-Z}, timestamp = {Wed, 17 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/AbateZFAWFLIIR14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Abdou-ArbiLMSB14, author = {Oumarou Abdou{-}Arbi and Sophie Lemosquet and Jaap Van Milgen and Anne Siegel and J{\'{e}}r{\'{e}}mie Bourdon}, title = {Exploring metabolism flexibility in complex organisms through quantitative study of precursor sets for system outputs}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {8}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-8}, doi = {10.1186/1752-0509-8-8}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Abdou-ArbiLMSB14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/AbnaofMWMSLSHWZWF14, author = {Khalid Abnaof and Nikhil Mallela and Gudrun Walenda and Steffen Meurer and Kristin Ser{\'{e}} and Qiong Lin and Bert Smeets and Kurt Hoffmann and Wolfgang Wagner and Martin Zenke and Ralf Weiskirchen and Holger Fr{\"{o}}hlich}, title = {TGF-beta stimulation in human and murine cells reveals commonly affected biological processes and pathways at transcription level}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {55}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-55}, doi = {10.1186/1752-0509-8-55}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/AbnaofMWMSLSHWZWF14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/AidelbergTRDBA14, author = {Guy Aidelberg and Benjamin D. Towbin and Daphna Rothschild and Erez Dekel and Anat Bren and Uri Alon}, title = {Hierarchy of non-glucose sugars in Escherichia coli}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {133}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0133-z}, doi = {10.1186/S12918-014-0133-Z}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/AidelbergTRDBA14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/AlberichLSST14, author = {Ricardo Alberich and Merc{\`{e}} Llabr{\'{e}}s and David S{\'{a}}nchez and Marta Simeoni and Marc Tuduri}, title = {MP-Align: alignment of metabolic pathways}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {58}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-58}, doi = {10.1186/1752-0509-8-58}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/AlberichLSST14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/AlcarazPBBJCADB14, author = {Nicolas Alcaraz and Josch Pauling and Richa Batra and Eudes Barbosa and Alexander Junge and Anne Christensen and Vasco Ariston de Carvalho Azevedo and Henrik J. Ditzel and Jan Baumbach}, title = {KeyPathwayMiner 4.0: condition-specific pathway analysis by combining multiple omics studies and networks with Cytoscape}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {99}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0099-x}, doi = {10.1186/S12918-014-0099-X}, timestamp = {Wed, 24 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/AlcarazPBBJCADB14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/AndrieuxBT14, author = {Geoffroy Andrieux and Michel Le Borgne and Nathalie Th{\'{e}}ret}, title = {An integrative modeling framework reveals plasticity of TGF-{\(\beta\)} signaling}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {30}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-30}, doi = {10.1186/1752-0509-8-30}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/AndrieuxBT14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/AungTRT14, author = {Hnin H. Aung and Athanasios Tsoukalas and John C. Rutledge and Ilias Tagkopoulos}, title = {A systems biology analysis of brain microvascular endothelial cell lipotoxicity}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {80}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-80}, doi = {10.1186/1752-0509-8-80}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/AungTRT14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/AwadC14, author = {Sherine Awad and Jin Chen}, title = {Inferring transcription factor collaborations in gene regulatory networks}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-1}}, pages = {S1}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S1-S1}, doi = {10.1186/1752-0509-8-S1-S1}, timestamp = {Tue, 16 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/AwadC14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BarterSMY14, author = {Rebecca L. Barter and Sarah{-}Jane Schramm and Graham J. Mann and Yee Hwa Yang}, title = {Network-based biomarkers enhance classical approaches to prognostic gene expression signatures}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-4}}, pages = {S5}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S4-S5}, doi = {10.1186/1752-0509-8-S4-S5}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BarterSMY14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BarveHMW14, author = {Aditya Barve and Sayed{-}Rzgar Hosseini and Olivier C. Martin and Andreas Wagner}, title = {Historical contingency and the gradual evolution of metabolic properties in central carbon and genome-scale metabolisms}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {48}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-48}, doi = {10.1186/1752-0509-8-48}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BarveHMW14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BittigMNSU14, author = {Arne T. Bittig and Claudia Matschegewski and J. Barbara Nebe and Susanne St{\"{a}}hlke and Adelinde M. Uhrmacher}, title = {Membrane related dynamics and the formation of actin in cells growing on micro-topographies: a spatial computational model}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {106}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0106-2}, doi = {10.1186/S12918-014-0106-2}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BittigMNSU14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BlanchardCL14, author = {Andrew E. Blanchard and Venhar Celik and Ting Lu}, title = {Extinction, coexistence, and localized patterns of a bacterial population with contact-dependent inhibition}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {23}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-23}, doi = {10.1186/1752-0509-8-23}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/BlanchardCL14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BlavyGLMS14, author = {Pierre Blavy and Florence Gondret and Sandrine Lagarrigue and Jaap Van Milgen and Anne Siegel}, title = {Using a large-scale knowledge database on reactions and regulations to propose key upstream regulators of various sets of molecules participating in cell metabolism}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {32}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-32}, doi = {10.1186/1752-0509-8-32}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BlavyGLMS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BosqueFPFE14, author = {Gabriel Bosque and Abel Folch{-}Fortuny and Jes{\'{u}}s Pic{\'{o}} and Alberto Ferrer and Santiago F. Elena}, title = {Topology analysis and visualization of Potyvirus protein-protein interaction network}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {129}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0129-8}, doi = {10.1186/S12918-014-0129-8}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BosqueFPFE14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/CaberlottoN14, author = {Laura Caberlotto and Thanh{-}Phuong Nguyen}, title = {A systems biology investigation of neurodegenerative dementia reveals a pivotal role of autophagy}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {65}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-65}, doi = {10.1186/1752-0509-8-65}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/CaberlottoN14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/CampbellA14, author = {Colin Campbell and R{\'{e}}ka Albert}, title = {Stabilization of perturbed Boolean network attractors through compensatory interactions}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {53}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-53}, doi = {10.1186/1752-0509-8-53}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/CampbellA14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Cardelli14, author = {Luca Cardelli}, title = {Morphisms of reaction networks that couple structure to function}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {84}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-84}, doi = {10.1186/1752-0509-8-84}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Cardelli14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/CarreiraEMVPTRR14, author = {Rafael Carreira and Pedro Evangelista and Paulo Maia and Paulo Vila{\c{c}}a and Marcellinus Pont and Jean{-}Fran{\c{c}}ois Tomb and Isabel Rocha and Miguel Rocha}, title = {{CBFA:} phenotype prediction integrating metabolic models with constraints derived from experimental data}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {123}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0123-1}, doi = {10.1186/S12918-014-0123-1}, timestamp = {Wed, 12 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/CarreiraEMVPTRR14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChenJZJ14, author = {Yong Chen and Thibault Jacquemin and Shuyan Zhang and Rui Jiang}, title = {Prioritizing protein complexes implicated in human diseases by network optimization}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-1}}, pages = {S2}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S1-S2}, doi = {10.1186/1752-0509-8-S1-S2}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChenJZJ14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChenMZLZ14, author = {Haifen Chen and Piyushkumar A. Mundra and Li Na Zhao and Feng Lin and Jie Zheng}, title = {Highly sensitive inference of time-delayed gene regulation by network deconvolution}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-4}}, pages = {S6}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S4-S6}, doi = {10.1186/1752-0509-8-S4-S6}, timestamp = {Mon, 07 Jun 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChenMZLZ14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChengAZM14, author = {Hsueh{-}Chien Cheng and Bastian Robert Angermann and Fengkai Zhang and Martin Meier{-}Schellersheim}, title = {NetworkViewer: visualizing biochemical reaction networks with embedded rendering of molecular interaction rules}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {70}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-70}, doi = {10.1186/1752-0509-8-70}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChengAZM14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChiangLCH14, author = {Austin W. T. Chiang and Wei{-}Chung Liu and Pep Charusanti and Ming{-}Jing Hwang}, title = {Understanding system dynamics of an adaptive enzyme network from globally profiled kinetic parameters}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {4}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-4}, doi = {10.1186/1752-0509-8-4}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChiangLCH14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChinCWHKL14, author = {Chia{-}Hao Chin and Shu{-}Hwa Chen and Hsin{-}Hung Wu and Chin{-}Wen Ho and Ming{-}Tat Ko and Chung{-}Yen Lin}, title = {cytoHubba: identifying hub objects and sub-networks from complex interactome}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-4}}, pages = {S11}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S4-S11}, doi = {10.1186/1752-0509-8-S4-S11}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChinCWHKL14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChristadorePKS14, author = {Lisa M. Christadore and Lisa Pham and Eric D. Kolaczyk and Scott E. Schaus}, title = {Improvement of experimental testing and network training conditions with genome-wide microarrays for more accurate predictions of drug gene targets}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {7}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-7}, doi = {10.1186/1752-0509-8-7}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChristadorePKS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChuHCCRLBRLQS14, author = {Jen{-}hwa Chu and Craig P. Hersh and Peter J. Castaldi and Michael H. Cho and Benjamin A. Raby and Nan M. Laird and Russell Bowler and Stephen I. Rennard and Joseph Loscalzo and John Quackenbush and Edwin K. Silverman}, title = {Analyzing networks of phenotypes in complex diseases: methodology and applications in {COPD}}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {78}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-78}, doi = {10.1186/1752-0509-8-78}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChuHCCRLBRLQS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChuangL14, author = {Chia{-}Hua Chuang and Chun{-}Liang Lin}, title = {Synthesizing genetic sequential logic circuit with clock pulse generator}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {63}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-63}, doi = {10.1186/1752-0509-8-63}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChuangL14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/CoelhoAMPRCBO14, author = {Edgar D. Coelho and Joel Arrais and S{\'{e}}rgio Matos and Carlos Pereira and Nuno Rosa and Maria Jos{\'{e}} Correia and Marlene Barros and Jos{\'{e}} Lu{\'{\i}}s Oliveira}, title = {Computational prediction of the human-microbial oral interactome}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {24}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-24}, doi = {10.1186/1752-0509-8-24}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/CoelhoAMPRCBO14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ConesaM14, author = {Ana Conesa and Ali Mortazavi}, title = {The common ground of genomics and systems biology}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-2}}, pages = {S1}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S2-S1}, doi = {10.1186/1752-0509-8-S2-S1}, timestamp = {Fri, 17 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/ConesaM14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/CostaVV14, author = {Rafael S. Costa and Andr{\'{e}} Ver{\'{\i}}ssimo and Susana Vinga}, title = {KiMoSys: a web-based repository of experimental data for KInetic MOdels of biological SYStems}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {85}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0085-3}, doi = {10.1186/S12918-014-0085-3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/CostaVV14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/DamSSS14, author = {Jesse C. J. van Dam and Peter J. Schaap and V{\'{\i}}tor A. P. Martins dos Santos and Mar{\'{\i}}a Su{\'{a}}rez{-}Diez}, title = {Integration of heterogeneous molecular networks to unravel gene-regulation in Mycobacterium tuberculosis}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {111}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0111-5}, doi = {10.1186/S12918-014-0111-5}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/DamSSS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/DazardSDBB14, author = {Jean{-}Eudes J. Dazard and Yana Sandlers and Stephanie K. Doerner and Nathan A. Berger and Henri Brunengraber}, title = {Metabolomics of Apc \({}^{\mbox{ Min/+ }}\) mice genetically susceptible to intestinal cancer}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {72}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-72}, doi = {10.1186/1752-0509-8-72}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/DazardSDBB14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/DempseyA14, author = {Kathryn Dempsey and Hesham H. Ali}, title = {Identifying aging-related genes in mouse hippocampus using gateway nodes}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {62}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-62}, doi = {10.1186/1752-0509-8-62}, timestamp = {Fri, 11 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/DempseyA14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/DonitzW14, author = {J{\"{u}}rgen D{\"{o}}nitz and Edgar Wingender}, title = {EndoNet: an information resource about the intercellular signaling network}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {49}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-49}, doi = {10.1186/1752-0509-8-49}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/DonitzW14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/El-KebirBHK14, author = {Mohammed El{-}Kebir and Bernd W. Brandt and Jaap Heringa and Gunnar W. Klau}, title = {A web server for protein-protein interaction network querying}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {40}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-40}, doi = {10.1186/1752-0509-8-40}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/El-KebirBHK14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/El-SemmanKSNSN14, author = {Ibrahim E. El{-}Semman and Fredrik H. Karlsson and Saeed Shoaie and Intawat Nookaew and Taysir Hassan A. Soliman and Jens Nielsen}, title = {Genome-scale metabolic reconstructions of Bifidobacterium adolescentis {L2-32} and Faecalibacterium prausnitzii {A2-165} and their interaction}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {41}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-41}, doi = {10.1186/1752-0509-8-41}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/El-SemmanKSNSN14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Espinosa-SotoIAAF14, author = {Carlos Espinosa{-}Soto and Richard G. H. Immink and Gerco C. Angenent and Elena R. {\'{A}}lvarez{-}Buylla and Stefan de Folter}, title = {Tetramer formation in Arabidopsis {MADS} domain proteins: analysis of a protein-protein interaction network}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {9}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-9}, doi = {10.1186/1752-0509-8-9}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Espinosa-SotoIAAF14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/FadhalGM14, author = {Emad Fadhal and Junaid Gamieldien and Eric C. Mwambene}, title = {Protein interaction networks as metric spaces: a novel perspective on distribution of hubs}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {6}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-6}, doi = {10.1186/1752-0509-8-6}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/FadhalGM14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/FadhalMG14, author = {Emad Fadhal and Eric C. Mwambene and Junaid Gamieldien}, title = {Modelling human protein interaction networks as metric spaces has potential in disease research and drug target discovery}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {68}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-68}, doi = {10.1186/1752-0509-8-68}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/FadhalMG14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/FarhangmehrMTS14, author = {Farzaneh Farhangmehr and Mano Ram Maurya and Daniel M. Tartakovsky and Shankar Subramaniam}, title = {Information theoretic approach to complex biological network reconstruction: application to cytokine release in {RAW} 264.7 macrophages}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {77}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-77}, doi = {10.1186/1752-0509-8-77}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/FarhangmehrMTS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GanegodaWWL14, author = {Gamage Upeksha Ganegoda and Jianxin Wang and Fang{-}Xiang Wu and Min Li}, title = {Prediction of disease genes using tissue-specified gene-gene network}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-3}}, pages = {S3}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S3-S3}, doi = {10.1186/1752-0509-8-S3-S3}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GanegodaWWL14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GarciaDCS14, author = {Benjamin Garcia and Gargi Datta and Gregory P. Cosgrove and Michael Strong}, title = {Network and matrix analysis of the respiratory disease interactome}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {34}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-34}, doi = {10.1186/1752-0509-8-34}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GarciaDCS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GerinMF14, author = {St{\'{e}}phanie G{\'{e}}rin and Gr{\'{e}}gory Mathy and Fabrice Franck}, title = {Modeling the dependence of respiration and photosynthesis upon light, acetate, carbon dioxide, nitrate and ammonium in Chlamydomonas reinhardtii using design of experiments and multiple regression}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {96}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0096-0}, doi = {10.1186/S12918-014-0096-0}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GerinMF14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GlassQSCRYD14, author = {Kimberly Glass and John Quackenbush and Edwin K. Silverman and Bartolome Celli and Stephen I. Rennard and Guo{-}Cheng Yuan and Dawn L. DeMeo}, title = {Sexually-dimorphic targeting of functionally-related genes in {COPD}}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {118}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0118-y}, doi = {10.1186/S12918-014-0118-Y}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GlassQSCRYD14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Gomez-CabreroAMTMGBBCT14, author = {David Gomez{-}Cabrero and Imad Abugessaisa and Dieter Maier and Andrew E. Teschendorff and Matthias Merkenschlager and Andreas Gisel and Esteban Ballestar and Erik Bongcam{-}Rudloff and Ana Conesa and Jesper Tegn{\'{e}}r}, title = {Data integration in the era of omics: current and future challenges}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-2}}, pages = {I1}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S2-I1}, doi = {10.1186/1752-0509-8-S2-I1}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Gomez-CabreroAMTMGBBCT14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GongF14, author = {Haijun Gong and Lu Feng}, title = {Computational analysis of the roles of ER-Golgi network in the cell cycle}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-4}}, pages = {S3}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S4-S3}, doi = {10.1186/1752-0509-8-S4-S3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GongF14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GongWC14, author = {Haijun Gong and Tong Tong Wu and Edmund M. Clarke}, title = {Pathway-gene identification for pancreatic cancer survival via doubly regularized Cox regression}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-1}}, pages = {S3}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S1-S3}, doi = {10.1186/1752-0509-8-S1-S3}, timestamp = {Sat, 30 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GongWC14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GuzmanMMSCHSTDZRC14, author = {Shirley Guzm{\'{a}}n and Silvia Marin and Anibal Miranda and Vitaly A. Selivanov and Josep J. Centelles and Romain Harmancey and Fatima Smih and Annie Turkieh and Yves Durocher and Antonio Zorzano and Philippe Rouet and Marta Cascante}, title = {\({}^{\mbox{13}}\)C metabolic flux analysis shows that resistin impairs the metabolic response to insulin in {L6E9} myotubes}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {109}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0109-z}, doi = {10.1186/S12918-014-0109-Z}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GuzmanMMSCHSTDZRC14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HabibiEA14, author = {Iman Habibi and Effat S. Emamian and Ali Abdi}, title = {Quantitative analysis of intracellular communication and signaling errors in signaling networks}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {89}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0089-z}, doi = {10.1186/S12918-014-0089-Z}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HabibiEA14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HamonJB14, author = {J{\'{e}}r{\'{e}}my Hamon and Paul Jennings and Fr{\'{e}}d{\'{e}}ric Y. Bois}, title = {Systems biology modeling of omics data: effect of cyclosporine a on the Nrf2 pathway in human renal cells}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {76}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-76}, doi = {10.1186/1752-0509-8-76}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HamonJB14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HaoZWZLGS14, author = {Tong Hao and Zheng Zeng and Bin Wang and Yichen Zhang and Yichen Liu and Xuyun Geng and Jinsheng Sun}, title = {The protein-protein interaction network of eyestalk, Y-organ and hepatopancreas in Chinese mitten crab Eriocheir sinensis}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {39}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-39}, doi = {10.1186/1752-0509-8-39}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HaoZWZLGS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HariharanHTSJP14, author = {Ramkumar Hariharan and Jessica M. Hoffman and Ariel S. Thomas and Quinlyn A. Soltow and Dean P. Jones and Daniel E. L. Promislow}, title = {Invariance and plasticity in the Drosophila melanogaster metabolomic network in response to temperature}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {139}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0139-6}, doi = {10.1186/S12918-014-0139-6}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HariharanHTSJP14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HasdemirHWS14, author = {Dicle Hasdemir and Huub C. J. Hoefsloot and Johan A. Westerhuis and Age K. Smilde}, title = {How informative is your kinetic model?: using resampling methods for model invalidation}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {61}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-61}, doi = {10.1186/1752-0509-8-61}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HasdemirHWS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HeWQZ14, author = {Jieyue He and Chunyan Wang and Kunpu Qiu and Wei Zhong}, title = {An novel frequent probability pattern mining algorithm based on circuit simulation method in uncertain biological networks}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-3}}, pages = {S6}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S3-S6}, doi = {10.1186/1752-0509-8-S3-S6}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HeWQZ14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HegdePM14, author = {Shubhada R. Hegde and Khushbu Pal and Shekhar C. Mande}, title = {Differential enrichment of regulatory motifs in the composite network of protein-protein and gene regulatory interactions}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {26}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-26}, doi = {10.1186/1752-0509-8-26}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HegdePM14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HellwegerFB14, author = {Ferdi L. Hellweger and Neil D. Fredrick and John A. Berges}, title = {Age-correlated stress resistance improves fitness of yeast: support from agent-based simulations}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {18}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-18}, doi = {10.1186/1752-0509-8-18}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HellwegerFB14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Hernandez-de-DiegoBGTAC14, author = {Rafael Hern{\'{a}}ndez{-}de{-}Diego and Noemi Boix{-}Chova and David Gomez{-}Cabrero and Jesper Tegn{\'{e}}r and Imad Abugessaisa and Ana Conesa}, title = {STATegra {EMS:} an Experiment Management System for complex next-generation omics experiments}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-2}}, pages = {S9}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S2-S9}, doi = {10.1186/1752-0509-8-S2-S9}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Hernandez-de-DiegoBGTAC14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HeydeBHSKB14, author = {Silvia von der Heyde and Christian Bender and Frauke Henjes and Johanna Sonntag and Ulrike Korf and Tim Bei{\ss}barth}, title = {Boolean ErbB network reconstructions and perturbation simulations reveal individual drug response in different breast cancer cell lines}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {75}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-75}, doi = {10.1186/1752-0509-8-75}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HeydeBHSKB14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Hijas-ListeKBB14, author = {Gundi{\'{a}}n M. de Hijas{-}Liste and Edda Klipp and Eva Balsa{-}Canto and Julio R. Banga}, title = {Global dynamic optimization approach to predict activation in metabolic pathways}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {1}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-1}, doi = {10.1186/1752-0509-8-1}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Hijas-ListeKBB14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HillMWBM14, author = {Christopher G. Hill and Lilya V. Matyunina and L. DeEtte Walker and Benedict B. Benigno and John F. McDonald}, title = {Transcriptional override: a regulatory network model of indirect responses to modulations in microRNA expression}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {36}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-36}, doi = {10.1186/1752-0509-8-36}, timestamp = {Thu, 29 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/HillMWBM14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HsuYLHC14, author = {Chih{-}Yuan Hsu and Tsu{-}Chun Yu and Ling{-}Jiun Lin and Rei{-}Hsing Hu and Bor{-}Sen Chen}, title = {Systematic approach to Escherichia coli cell population control using a genetic lysis circuit}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-5}}, pages = {S7}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S5-S7}, doi = {10.1186/1752-0509-8-S5-S7}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HsuYLHC14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/IhekwabaMB14, author = {Adaoha E. C. Ihekwaba and Ivan Mura and Gary C. Barker}, title = {Computational modelling and analysis of the molecular network regulating sporulation initiation in Bacillus subtilis}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {119}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0119-x}, doi = {10.1186/S12918-014-0119-X}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/IhekwabaMB14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/InghamOMBCKRJDWSH14, author = {Aaron Ingham and Simone A. Osborne and Moira Menzies and Suzie Briscoe and Wei Chen and Kritaya Kongsuwan and Antonio Reverter and Angela Jeanes and Brian P. Dalrymple and Gene Wijffels and Robert A. Seymour and Nicholas J. Hudson}, title = {{RNF14} is a regulator of mitochondrial and immune function in muscle}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {10}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-10}, doi = {10.1186/1752-0509-8-10}, timestamp = {Fri, 28 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/InghamOMBCKRJDWSH14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/IranzoV14, author = {Jaime Iranzo and Pablo Villoslada}, title = {Autoimmunity and tumor immunology: two facets of a probabilistic immune system}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {120}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0120-4}, doi = {10.1186/S12918-014-0120-4}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/IranzoV14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/JohanssonSC14, author = {Rikard Johansson and Peter Str{\aa}lfors and Gunnar Cedersund}, title = {Combining test statistics and models in bootstrapped model rejection: it is a balancing act}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {46}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-46}, doi = {10.1186/1752-0509-8-46}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/JohanssonSC14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/JonnalagaddaS14, author = {Sudhakar Jonnalagadda and Rajagopalan Srinivasan}, title = {An efficient graph theory based method to identify every minimal reaction set in a metabolic network}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {28}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-28}, doi = {10.1186/1752-0509-8-28}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/JonnalagaddaS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KasaviEAOK14, author = {Ceyda Kasavi and Serpil Eraslan and Kazim Yal{\c{c}}in Arga and Ebru Oner and Bet{\"{u}}l Kirdar}, title = {A system based network approach to ethanol tolerance in Saccharomyces cerevisiae}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {90}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0090-6}, doi = {10.1186/S12918-014-0090-6}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/KasaviEAOK14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KelderVOGR14, author = {Thomas Kelder and Lars Verschuren and Ben van Ommen and Alain J. van Gool and Marijana Radonjic}, title = {Network signatures link hepatic effects of anti-diabetic interventions with systemic disease parameters}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {108}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0108-0}, doi = {10.1186/S12918-014-0108-0}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KelderVOGR14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KinoshitaIUT14, author = {Ryoichi Kinoshita and Mitsuo Iwadate and Hideaki Umeyama and Y{-}h. Taguchi}, title = {Genes associated with genotype-specific {DNA} methylation in squamous cell carcinoma as candidate drug targets}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-1}}, pages = {S4}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S1-S4}, doi = {10.1186/1752-0509-8-S1-S4}, timestamp = {Tue, 16 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KinoshitaIUT14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KochiHARWM14, author = {Naomi Kochi and Tom{\'{a}}s Helikar and Laura Allen and Jim A. Rogers and Zhenyuan Wang and Mihaela Teodora Matache}, title = {Sensitivity analysis of biological Boolean networks using information fusion based on nonadditive set functions}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {92}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0092-4}, doi = {10.1186/S12918-014-0092-4}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KochiHARWM14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KogelmanK14, author = {Lisette J. A. Kogelman and Haja N. Kadarmideen}, title = {Weighted Interaction {SNP} Hub {(WISH)} network method for building genetic networks for complex diseases and traits using whole genome genotype data}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-2}}, pages = {S5}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S2-S5}, doi = {10.1186/1752-0509-8-S2-S5}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KogelmanK14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LaiCHW14, author = {Fu{-}Jou Lai and Hong{-}Tsun Chang and Yueh{-}Min Huang and Wei{-}Sheng Wu}, title = {A comprehensive performance evaluation on the prediction results of existing cooperative transcription factors identification algorithms}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-4}}, pages = {S9}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S4-S9}, doi = {10.1186/1752-0509-8-S4-S9}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LaiCHW14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LaiJCHW14, author = {Fu{-}Jou Lai and Mei{-}Huei Jhu and Chia{-}Chun Chiu and Yueh{-}Min Huang and Wei{-}Sheng Wu}, title = {Identifying cooperative transcription factors in yeast using multiple data sources}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-5}}, pages = {S2}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S5-S2}, doi = {10.1186/1752-0509-8-S5-S2}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LaiJCHW14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LakatosTPVC14, author = {Dora Lakatos and Emily D. Travis and Kelsey E. Pierson and Jay L. Vivian and Andr{\'{a}}s Czir{\'{o}}k}, title = {Autocrine {FGF} feedback can establish distinct states of Nanog expression in pluripotent stem cells: a computational analysis}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {112}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0112-4}, doi = {10.1186/S12918-014-0112-4}, timestamp = {Wed, 09 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LakatosTPVC14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LanzaCRA14, author = {Amanda M. Lanza and Kathleen A. Curran and Lindsey G. Rey and Hal S. Alper}, title = {A condition-specific codon optimization approach for improved heterologous gene expression in Saccharomyces cerevisiae}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {33}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-33}, doi = {10.1186/1752-0509-8-33}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LanzaCRA14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LarocqueCN14, author = {Mathieu Larocque and Thierry Ch{\'{e}}nard and Rafael Najmanovich}, title = {A curated C. difficile strain 630 metabolic network: prediction of essential targets and inhibitors}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {117}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0117-z}, doi = {10.1186/S12918-014-0117-Z}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LarocqueCN14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LaviSG14, author = {Orit Lavi and Jeff Skinner and Michael M. Gottesman}, title = {Network features suggest new hepatocellular carcinoma treatment strategies}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {88}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0088-0}, doi = {10.1186/S12918-014-0088-0}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LaviSG14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LeeHH14, author = {Wei{-}Po Lee and Yu{-}Ting Hsiao and Wei{-}Che Hwang}, title = {Designing a parallel evolutionary algorithm for inferring gene networks on the cloud computing environment}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {5}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-5}, doi = {10.1186/1752-0509-8-5}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LeeHH14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LeeLKT14, author = {Mikyung Lee and Zhichao Liu and Reagan Kelly and Weida Tong}, title = {Of text and gene - using text mining methods to uncover hidden knowledge in toxicogenomics}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {93}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0093-3}, doi = {10.1186/S12918-014-0093-3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LeeLKT14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiFRHDZCLLYW14, author = {Peng Li and Yingxue Fu and Jinlong Ru and Chao Huang and Jiangfeng Du and Chunli Zheng and Xuetong Chen and Pidong Li and Aiping Lu and Ling Yang and Yonghua Wang}, title = {Insights from systems pharmacology into cardiovascular drug discovery and therapy}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {141}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0141-z}, doi = {10.1186/S12918-014-0141-Z}, timestamp = {Wed, 27 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiFRHDZCLLYW14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LinLWLCCLHC14, author = {Che Lin and Chin{-}Nan Lin and Yu{-}Chao Wang and Fang{-}Yu Liu and Yu{-}Wen Chien and Yung{-}Jen Chuang and Chung{-}Yu Lan and Wen{-}Ping Hsieh and Bor{-}Sen Chen}, title = {Robustness analysis on interspecies interaction network for iron and glucose competition between Candida albicans and zebrafish during infection}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-5}}, pages = {S6}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S5-S6}, doi = {10.1186/1752-0509-8-S5-S6}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LinLWLCCLHC14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LinLWLCLHC14, author = {Che Lin and Chin{-}Nan Lin and Yu{-}Chao Wang and Fang{-}Yu Liu and Yung{-}Jen Chuang and Chung{-}Yu Lan and Wen{-}Ping Hsieh and Bor{-}Sen Chen}, title = {The role of TGF-{\(\beta\)} signaling and apoptosis in innate and adaptive immunity in zebrafish: a systems biology approach}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {116}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0116-0}, doi = {10.1186/S12918-014-0116-0}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LinLWLCLHC14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LindforsJOROP14, author = {Erno Lindfors and Paula Jouhten and Merja Oja and Eija Rintala and Matej Oresic and Merja Penttil{\"{a}}}, title = {Integration of transcription and flux data reveals molecular paths associated with differences in oxygen-dependent phenotypes of Saccharomyces cerevisiae}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {16}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-16}, doi = {10.1186/1752-0509-8-16}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LindforsJOROP14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiuDPDMCW14, author = {Sheng Liu and Shamitha Dissanayake and Sanjay Patel and Xin Dang and Todd Mlsna and Yixin Chen and Dawn Wilkins}, title = {Learning accurate and interpretable models based on regularized random forests regression}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-3}}, pages = {S5}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S3-S5}, doi = {10.1186/1752-0509-8-S3-S5}, timestamp = {Wed, 11 Jan 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/LiuDPDMCW14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiuFOHN14, author = {Lifang Liu and Amir Feizi and Tobias {\"{O}}sterlund and Carsten Hjort and Jens Nielsen}, title = {Genome-scale analysis of the high-efficient protein secretion system of Aspergillus oryzae}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {73}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-73}, doi = {10.1186/1752-0509-8-73}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiuFOHN14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiuG14, author = {Yang Liu and Rudiyanto Gunawan}, title = {Parameter estimation of dynamic biological network models using integrated fluxes}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {127}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0127-x}, doi = {10.1186/S12918-014-0127-X}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiuG14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiuOLZPF14, author = {Joanne K. Liu and Edward J. O'Brien and Joshua A. Lerman and Karsten Zengler and Bernhard O. Palsson and Adam M. Feist}, title = {Reconstruction and modeling protein translocation and compartmentalization in Escherichia coli at the genome-scale}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {110}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0110-6}, doi = {10.1186/S12918-014-0110-6}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiuOLZPF14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiuP14, author = {Xueming Liu and Linqiang Pan}, title = {Detection of driver metabolites in the human liver metabolic network using structural controllability analysis}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {51}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-51}, doi = {10.1186/1752-0509-8-51}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiuP14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiuWLWZSWQZ14, author = {Hui Liu and Tongtong Wang and Hongbo Liu and Yanjun Wei and Guofeng Zhao and Jianzhong Su and Qiong Wu and Hong Qiao and Yan Zhang}, title = {Detection of type 2 diabetes related modules and genes based on epigenetic networks}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-1}}, pages = {S5}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S1-S5}, doi = {10.1186/1752-0509-8-S1-S5}, timestamp = {Thu, 15 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiuWLWZSWQZ14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiuWZ14, author = {Li{-}Zhi Liu and Fang{-}Xiang Wu and Wen{-}Jun Zhang}, title = {A group LASSO-based method for robustly inferring gene regulatory networks from multiple time-course datasets}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-3}}, pages = {S1}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S3-S1}, doi = {10.1186/1752-0509-8-S3-S1}, timestamp = {Thu, 22 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiuWZ14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LuoAZ14, author = {Zijun Luo and Robert Azencott and Yi Zhao}, title = {Modeling miRNA-mRNA interactions: fitting chemical kinetics equations to microarray data}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {19}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-19}, doi = {10.1186/1752-0509-8-19}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LuoAZ14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LuoGZFZLF14, author = {Xiaochuang Luo and Jingyi Gu and Rongxuan Zhu and Maoxiao Feng and Xuejiao Zhu and Yumin Li and Jia Fei}, title = {Integrative analysis of differential miRNA and functional study of miR-21 by seed-targeting inhibition in multiple myeloma cells in response to berberine}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {82}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-82}, doi = {10.1186/1752-0509-8-82}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LuoGZFZLF14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MaedaK14, author = {Kazuhiro Maeda and Hiroyuki Kurata}, title = {Analytical study of robustness of a negative feedback oscillator by multiparameter sensitivity}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-5}}, pages = {S1}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S5-S1}, doi = {10.1186/1752-0509-8-S5-S1}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MaedaK14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MencheSCMRCMLTGLBRASB14, author = {J{\"{o}}rg Menche and Amitabh Sharma and Michael H. Cho and Ruth J. Mayer and Stephen I. Rennard and Bartolome Celli and Bruce E. Miller and Nick Locantore and Ruth Tal{-}Singer and Soumitra Ghosh and Chris Larminie and Glyn Bradley and John H. Riley and Alvar Agusti and Edwin K. Silverman and Albert{-}L{\'{a}}szl{\'{o}} Barab{\'{a}}si}, title = {A diVIsive Shuffling Approach (VIStA) for gene expression analysis to identify subtypes in Chronic Obstructive Pulmonary Disease}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-2}}, pages = {S8}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S2-S8}, doi = {10.1186/1752-0509-8-S2-S8}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MencheSCMRCMLTGLBRASB14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MeyerCCKLTLBKRSTBSSS14, author = {Pablo Meyer and Thomas Cokelaer and Deepak Chandran and Kyung Hyuk Kim and Po{-}Ru Loh and George Tucker and Mark Lipson and Bonnie Berger and Clemens Kreutz and Andreas Raue and Bernhard Steiert and Jens Timmer and Erhan Bilal and Herbert M. Sauro and Gustavo Stolovitzky and Julio Saez{-}Rodriguez}, title = {Network topology and parameter estimation: from experimental design methods to gene regulatory network kinetics using a community based approach}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {13}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-13}, doi = {10.1186/1752-0509-8-13}, timestamp = {Fri, 01 Jul 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MeyerCCKLTLBKRSTBSSS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MeyerCS14, author = {Pablo Meyer and Guillermo A. Cecchi and Gustavo Stolovitzky}, title = {Spatial localization of the first and last enzymes effectively connects active metabolic pathways in bacteria}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {131}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0131-1}, doi = {10.1186/S12918-014-0131-1}, timestamp = {Fri, 01 Jul 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MeyerCS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MoralesTPVL14, author = {Yeimy Morales and Marta Tortajada and Jes{\'{u}}s Pic{\'{o}} and Josep Veh{\'{\i}} and Francisco Llaneras}, title = {Validation of an {FBA} model for Pichia pastoris in chemostat cultures}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {142}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0142-y}, doi = {10.1186/S12918-014-0142-Y}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MoralesTPVL14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MoriyaYK14, author = {Takefumi Moriya and Masayuki Yamamura and Daisuke Kiga}, title = {Effects of downstream genes on synthetic genetic circuits}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-4}}, pages = {S4}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S4-S4}, doi = {10.1186/1752-0509-8-S4-S4}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MoriyaYK14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MullenDBT14, author = {Emma Kate Mullen and Mark Daley and Alanna Gabrielle Backx and Graham James Thompson}, title = {Gene co-citation networks associated with worker sterility in honey bees}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {38}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-38}, doi = {10.1186/1752-0509-8-38}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MullenDBT14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/NarangKHL14, author = {Pankaj Narang and Shawez Khan and Anmol Hemrom and Andrew M. Lynn}, title = {MetaNET - a web-accessible interactive platform for biological metabolic network analysis}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {130}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0130-2}, doi = {10.1186/S12918-014-0130-2}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/NarangKHL14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/NelsonSBMSR14, author = {Martin R. Nelson and Kelly J. Sutton and Bindi S. Brook and Dann G. Mallet and Daniel P. Simpson and Roger G. Rank}, title = {STI-GMaS: an open-source environment for simulation of sexually-transmitted infections}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {66}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-66}, doi = {10.1186/1752-0509-8-66}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/NelsonSBMSR14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/NicolaeWBZH14, author = {Averina Nicolae and Judith Wahrheit and Janina Bahnemann and An{-}Ping Zeng and Elmar Heinzle}, title = {Non-stationary \({}^{\mbox{13}}\)C metabolic flux analysis of Chinese hamster ovary cells in batch culture using extracellular labeling highlights metabolic reversibility and compartmentation}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {50}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-50}, doi = {10.1186/1752-0509-8-50}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/NicolaeWBZH14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/OngVLLSRR14, author = {Wai Ong and Trang T. Vu and Klaus N. Lovendahl and Jenna M. Llull and Margrethe H. Serres and Margaret F. Romine and Jennifer L. Reed}, title = {Comparisons of Shewanella strains based on genome annotations, modeling, and experiments}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {31}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-31}, doi = {10.1186/1752-0509-8-31}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/OngVLLSRR14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Otero-MurasB14, author = {Irene Otero{-}Muras and Julio R. Banga}, title = {Multicriteria global optimization for biocircuit design}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {113}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0113-3}, doi = {10.1186/S12918-014-0113-3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Otero-MurasB14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Otero-MurasYS14, author = {Irene Otero{-}Muras and Pencho Yordanov and J{\"{o}}rg Stelling}, title = {A method for inverse bifurcation of biochemical switches: inferring parameters from dose response curves}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {114}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0114-2}, doi = {10.1186/S12918-014-0114-2}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Otero-MurasYS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/OuzounoglouKEXSVM14, author = {Eleftherios Ouzounoglou and Dimitrios Kalamatianos and Evangelia Emmanouilidou and Maria Xilouri and Leonidas Stefanis and Kostas Vekrellis and Elias S. Manolakos}, title = {In silico modeling of the effects of alpha-synuclein oligomerization on dopaminergic neuronal homeostasis}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {54}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-54}, doi = {10.1186/1752-0509-8-54}, timestamp = {Mon, 03 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/OuzounoglouKEXSVM14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PaciCF14, author = {Paola Paci and Teresa Colombo and Lorenzo Farina}, title = {Computational analysis identifies a sponge interaction network between long non-coding RNAs and messenger RNAs in human breast cancer}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {83}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-83}, doi = {10.1186/1752-0509-8-83}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PaciCF14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PalmisanoHWJTS14, author = {Alida Palmisano and Stefan Hoops and Layne T. Watson and Thomas C. Jones Jr and John J. Tyson and Clifford A. Shaffer}, title = {Multistate Model Builder {(MSMB):} a flexible editor for compact biochemical models}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {42}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-42}, doi = {10.1186/1752-0509-8-42}, timestamp = {Sat, 27 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PalmisanoHWJTS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PapanikolaouTLPS14, author = {Nikolaos A. Papanikolaou and Andrej Tillinger and Xiaoping Liu and Athanasios G. Papavassiliou and Esther L. Sabban}, title = {A systems approach identifies co-signaling molecules of early growth response 1 transcription factor in immobilization stress}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {100}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0100-8}, doi = {10.1186/S12918-014-0100-8}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PapanikolaouTLPS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ParvuG14, author = {Ovidiu Parvu and David R. Gilbert}, title = {Automatic validation of computational models using pseudo-3D spatio-temporal model checking}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {124}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0124-0}, doi = {10.1186/S12918-014-0124-0}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ParvuG14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PatilN14, author = {Ashwini Patil and Kenta Nakai}, title = {TimeXNet: Identifying active gene sub-networks using time-course gene expression profiles}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-4}}, pages = {S2}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S4-S2}, doi = {10.1186/1752-0509-8-S4-S2}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PatilN14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PauwelsLV18, author = {Edouard Pauwels and Christian Lajaunie and Jean{-}Philippe Vert}, title = {A Bayesian active learning strategy for sequential experimental design in systems biology}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {1}, pages = {102:1--102:11}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0102-6}, doi = {10.1186/S12918-014-0102-6}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PauwelsLV18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PayneW14, author = {Joshua L. Payne and Andreas Wagner}, title = {Latent phenotypes pervade gene regulatory circuits}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {64}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-64}, doi = {10.1186/1752-0509-8-64}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/PayneW14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PengLJWC14, author = {Jiajie Peng and Hongxiang Li and Qinghua Jiang and Yadong Wang and Jin Chen}, title = {An integrative approach for measuring semantic similarities using gene ontology}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-5}}, pages = {S8}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S5-S8}, doi = {10.1186/1752-0509-8-S5-S8}, timestamp = {Sun, 25 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PengLJWC14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PengWCCLW14, author = {Wei Peng and Jianxin Wang and Juan Cai and Lu Chen and Min Li and Fang{-}Xiang Wu}, title = {Improving protein function prediction using domain and protein complexes in {PPI} networks}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {35}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-35}, doi = {10.1186/1752-0509-8-35}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PengWCCLW14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PenrodM14, author = {Nadia M. Penrod and Jason H. Moore}, title = {Influence networks based on coexpression improve drug target discovery for the development of novel cancer therapeutics}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {12}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-12}, doi = {10.1186/1752-0509-8-12}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PenrodM14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PetersenRH14, author = {Brenden K. Petersen and Glen E. P. Ropella and C. Anthony Hunt}, title = {Toward modular biological models: defining analog modules based on referent physiological mechanisms}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {95}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0095-1}, doi = {10.1186/S12918-014-0095-1}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PetersenRH14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PiroWSROERK14, author = {Rosario M. Piro and Stefan Wiesberg and Gunnar Schramm and Nico Rebel and Marcus Oswald and Roland Eils and Gerhard Reinelt and Rainer K{\"{o}}nig}, title = {Network topology-based detection of differential gene regulation and regulatory switches in cell metabolism and signaling}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {56}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-56}, doi = {10.1186/1752-0509-8-56}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PiroWSROERK14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PlaisierLABBKPRFB14, author = {Christopher L. Plaisier and Fang{-}Yin Lo and Justin Ashworth and Aaron N. Brooks and Karlyn D. Beer and Amardeep Kaur and Min Pan and David J. Reiss and Marc T. Facciotti and Nitin S. Baliga}, title = {Evolution of context dependent regulation by expansion of feast/famine regulatory proteins}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {122}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0122-2}, doi = {10.1186/S12918-014-0122-2}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PlaisierLABBKPRFB14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PonzoniNTGMDDC14, author = {Ignacio Ponzoni and Mar{\'{\i}}a Jos{\'{e}} Nueda and Sonia Tarazona and Stefan G{\"{o}}tz and David Montaner and Julieta Sol Dussaut and Joaqu{\'{\i}}n Dopazo and Ana Conesa}, title = {Pathway network inference from gene expression data}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-2}}, pages = {S7}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S2-S7}, doi = {10.1186/1752-0509-8-S2-S7}, timestamp = {Thu, 02 Dec 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/PonzoniNTGMDDC14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/QianBMS14, author = {Yu Qian and S{\o}ren Besenbacher and Thomas Mailund and Mikkel Heide Schierup}, title = {Identifying disease associated genes by network propagation}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-1}}, pages = {S6}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S1-S6}, doi = {10.1186/1752-0509-8-S1-S6}, timestamp = {Tue, 16 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/QianBMS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/QiuTCA14, author = {Yushan Qiu and Takeyuki Tamura and Wai{-}Ki Ching and Tatsuya Akutsu}, title = {On control of singleton attractors in multiple Boolean networks: integer programming-based method}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-1}}, pages = {S7}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S1-S7}, doi = {10.1186/1752-0509-8-S1-S7}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/QiuTCA14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/QuekN14, author = {Lake{-}Ee Quek and Lars Keld Nielsen}, title = {A depth-first search algorithm to compute elementary flux modes by linear programming}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {94}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0094-2}, doi = {10.1186/S12918-014-0094-2}, timestamp = {Sun, 12 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/QuekN14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/RanganathanTS14, author = {Shoba Ranganathan and Tin Wee Tan and Christian Sch{\"{o}}nbach}, title = {InCoB2014: Systems Biology update from the Asia-Pacific}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-4}}, pages = {I1}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S4-I1}, doi = {10.1186/1752-0509-8-S4-I1}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/RanganathanTS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/RaoSEBJ14, author = {Shodhan Rao and Arjan van der Schaft and Karen van Eunen and Barbara M. Bakker and Bayu Jayawardhana}, title = {A model reduction method for biochemical reaction networks}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {52}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-52}, doi = {10.1186/1752-0509-8-52}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/RaoSEBJ14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ReshetovaSKW14, author = {Polina Reshetova and Age K. Smilde and Antoine H. C. van Kampen and Johan A. Westerhuis}, title = {Use of prior knowledge for the analysis of high-throughput transcriptomics and metabolomics data}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-2}}, pages = {S2}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S2-S2}, doi = {10.1186/1752-0509-8-S2-S2}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ReshetovaSKW14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ReverterVO14, author = {Ferran Reverter and Esteban Vegas and Josep M. Oller}, title = {Kernel-PCA data integration with enhanced interpretability}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-2}}, pages = {S6}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S2-S6}, doi = {10.1186/1752-0509-8-S2-S6}, timestamp = {Fri, 17 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/ReverterVO14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/RocaPHHCPM14, author = {Hernan Roca and Manjusha Pande and Jeffrey S. Huo and James Hernandez and James D. Cavalcoli and Kenneth J. Pienta and Richard C. McEachin}, title = {A bioinformatics approach reveals novel interactions of the {OVOL} transcription factors in the regulation of epithelial - mesenchymal cell reprogramming and cancer progression}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {29}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-29}, doi = {10.1186/1752-0509-8-29}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/RocaPHHCPM14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/RohE14, author = {Min K. Roh and Philip Eckhoff}, title = {Stochastic parameter search for events}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {126}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0126-y}, doi = {10.1186/S12918-014-0126-Y}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/RohE14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/RomanCA14, author = {Magdalena San Rom{\'{a}}n and H{\'{e}}ctor Cancela and Luis Acerenza}, title = {Source and regulation of flux variability in Escherichia coli}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {67}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-67}, doi = {10.1186/1752-0509-8-67}, timestamp = {Wed, 14 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/RomanCA14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Sands14, author = {Timothy R. Sands}, title = {Annual Acknowledgement of Reviewers}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {11}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-11}, doi = {10.1186/1752-0509-8-11}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Sands14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SasabeSKKMM14, author = {Masataka Sasabe and Sayumi Shintani and Reiko Kintaka and Kazunari Kaizu and Koji Makanae and Hisao Moriya}, title = {Evaluation of the lower protein limit in the budding yeast Saccharomyces cerevisiae using TIPI-gTOW}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {2}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-2}, doi = {10.1186/1752-0509-8-2}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SasabeSKKMM14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SchirmELS14, author = {Sibylle Schirm and Christoph Engel and Markus Loeffler and Markus Scholz}, title = {Modelling chemotherapy effects on granulopoiesis}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {138}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0138-7}, doi = {10.1186/S12918-014-0138-7}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SchirmELS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SchmidtFI14, author = {Andreas Schmidt and Ignasi Forne and Axel Imhof}, title = {Bioinformatic analysis of proteomics data}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-2}}, pages = {S3}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S2-S3}, doi = {10.1186/1752-0509-8-S2-S3}, timestamp = {Tue, 15 Nov 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/SchmidtFI14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Sebastian-LeonVMCTAASVMD14, author = {Patricia Sebasti{\'{a}}n{-}Le{\'{o}}n and Enrique Vidal and Pablo Minguez and Ana Conesa and Sonia Tarazona and Alicia Amadoz and Carmen Armero and Francisco Salavert and Antonio Vidal{-}Puig and David Montaner and Joaqu{\'{\i}}n Dopazo}, title = {Understanding disease mechanisms with models of signaling pathway activities}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {121}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0121-3}, doi = {10.1186/S12918-014-0121-3}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Sebastian-LeonVMCTAASVMD14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SinhaSTNTKRC14, author = {Neeraj Sinha and Sachin Sharma and Parul Tripathi and Simarjeet Negi and Kamiya Tikoo and Dhiraj Kumar and Kanury Rao and Samrat Chatterjee}, title = {Molecular signatures for obesity and associated disorders identified through partial least square regression models}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {104}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0104-4}, doi = {10.1186/S12918-014-0104-4}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SinhaSTNTKRC14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SongLA14, author = {Ruijie Song and Ping Liu and Murat Acar}, title = {Network-dosage compensation topologies as recurrent network motifs in natural gene networks}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {69}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-69}, doi = {10.1186/1752-0509-8-69}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SongLA14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SrihariMSLSKR14, author = {Sriganesh Srihari and Piyush B. Madhamshettiwar and Sarah Song and Chao Liu and Peter T. Simpson and Kum Khanna and Mark A. Ragan}, title = {Complex-based analysis of dysregulated cellular processes in cancer}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-4}}, pages = {S1}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S4-S1}, doi = {10.1186/1752-0509-8-S4-S1}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SrihariMSLSKR14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SrivastavaKR14, author = {Alok Srivastava and Suraj Kumar and Ramakrishna Ramaswamy}, title = {Two-layer modular analysis of gene and protein networks in breast cancer}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {81}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-81}, doi = {10.1186/1752-0509-8-81}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SrivastavaKR14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SriyudthsakSCYKOFNVSH14, author = {Kansuporn Sriyudthsak and Yuji Sawada and Yukako Chiba and Yui Yamashita and Shigehiko Kanaya and Hitoshi Onouchi and Toru Fujiwara and Satoshi Naito and Eberhard O. Voit and Fumihide Shiraishi and Masami Y. Hirai}, title = {A U-system approach for predicting metabolic behaviors and responses based on an alleged metabolic reaction network}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-5}}, pages = {S4}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S5-S4}, doi = {10.1186/1752-0509-8-S5-S4}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/SriyudthsakSCYKOFNVSH14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SunKT14, author = {Shuhao Sun and Fima C. Klebaner and Tianhai Tian}, title = {A new model of time scheme for progression of colorectal cancer}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-3}}, pages = {S2}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S3-S2}, doi = {10.1186/1752-0509-8-S3-S2}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SunKT14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SzekelyBZB14, author = {Tam{\'{a}}s Sz{\'{e}}kely and Kevin Burrage and Konstantinos C. Zygalakis and Manuel Barrio}, title = {Efficient simulation of stochastic chemical kinetics with the Stochastic Bulirsch-Stoer extrapolation method}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {71}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-71}, doi = {10.1186/1752-0509-8-71}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SzekelyBZB14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TanGHSB14, author = {Chin Wee Tan and Bruce S. Gardiner and Yumiko Hirokawa and David W. Smith and Antony W. Burgess}, title = {Analysis of Wnt signaling {\(\beta\)}-catenin spatial dynamics in {HEK293T} cells}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {44}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-44}, doi = {10.1186/1752-0509-8-44}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/TanGHSB14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TekuOV14, author = {Gabriel N. Teku and Csaba P. Ortutay and Mauno Vihinen}, title = {Identification of core {T} cell network based on immunome interactome}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {17}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-17}, doi = {10.1186/1752-0509-8-17}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/TekuOV14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TianK14, author = {Dan Tian and Pamela K. Kreeger}, title = {Analysis of the quantitative balance between insulin-like growth factor {(IGF)-1} ligand, receptor, and binding protein levels to predict cell sensitivity and therapeutic efficacy}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {98}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0098-y}, doi = {10.1186/S12918-014-0098-Y}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/TianK14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TianS14, author = {Tianhai Tian and Kate Smith{-}Miles}, title = {Mathematical modeling of GATA-switching for regulating the differentiation of hematopoietic stem cell}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-1}}, pages = {S8}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S1-S8}, doi = {10.1186/1752-0509-8-S1-S8}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/TianS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TianZHCZSXHW14, author = {Ye Tian and Bai Zhang and Eric P. Hoffman and Robert Clarke and Zhen Zhang and Ie{-}Ming Shih and Jianhua Xuan and David M. Herrington and Yue Joseph Wang}, title = {Knowledge-fused differential dependency network models for detecting significant rewiring in biological networks}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {87}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0087-1}, doi = {10.1186/S12918-014-0087-1}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/TianZHCZSXHW14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TomescuMT14, author = {Oana A. Tomescu and Diethard Mattanovich and Gerhard G. Thallinger}, title = {Integrative omics analysis. {A} study based on Plasmodium falciparum mRNA and protein data}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-2}}, pages = {S4}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S2-S4}, doi = {10.1186/1752-0509-8-S2-S4}, timestamp = {Fri, 17 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/TomescuMT14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TondelNLS14, author = {Kristin T{\o}ndel and Steven A. Niederer and Sander Land and Nicolas Smith}, title = {Insight into model mechanisms through automatic parameter fitting: a new methodological framework for model development}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {59}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-59}, doi = {10.1186/1752-0509-8-59}, timestamp = {Mon, 21 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/TondelNLS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TranOHPP14, author = {Trish P. Tran and Edison Ong and Andrew P. Hodges and Giovanni Paternostro and Carlo Piermarocchi}, title = {Prediction of kinase inhibitor response using activity profiling, in vitro screening, and elastic net regression}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {74}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-74}, doi = {10.1186/1752-0509-8-74}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/TranOHPP14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Trusina14, author = {Ala Trusina}, title = {Stress induced telomere shortening: longer life with less mutations?}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {27}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-27}, doi = {10.1186/1752-0509-8-27}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Trusina14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TsengCSGSHTP14, author = {Feng{-}Jen Tseng and Wei{-}Tso Chia and Jia{-}Fwu Shyu and Guo{-}Hau Gou and Huey{-}Kang Sytwu and Ching{-}Wu Hsia and Min{-}Jen Tseng and Ru{-}Yu Pan}, title = {Interactomics profiling of the negative regulatory function of carbon monoxide on RANKL-treated {RAW} 264.7 cells during osteoclastogenesis}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {57}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-57}, doi = {10.1186/1752-0509-8-57}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/TsengCSGSHTP14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/UsherenkoSMEKT14, author = {Svetlana Usherenko and Hilke Stibbe and Massimiliano Musc{\`{o}} and Lars{-}Oliver Essen and Ekaterina A. Kostina and Christof Taxis}, title = {Photo-sensitive degron variants for tuning protein stability by light}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {128}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0128-9}, doi = {10.1186/S12918-014-0128-9}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/UsherenkoSMEKT14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/VaneeBSSKWDF14, author = {Niti Vanee and J. Paul Brooks and Victor Spicer and Dmitriy Shamshurin and Oleg Krokhin and John A. Wilkins and Yu Deng and Stephen S. Fong}, title = {Proteomics-based metabolic modeling and characterization of the cellulolytic bacterium Thermobifida fusca}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {86}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0086-2}, doi = {10.1186/S12918-014-0086-2}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/VaneeBSSKWDF14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/VanlierTHR14, author = {Joep Vanlier and Christian A. Tiemann and Peter A. J. Hilbers and Natal A. W. van Riel}, title = {Optimal experiment design for model selection in biochemical networks}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {20}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-20}, doi = {10.1186/1752-0509-8-20}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/VanlierTHR14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Vera-LiconaJGML14, author = {Paola Vera{-}Licona and Abdul Salam Jarrah and Luis David Garc{\'{\i}}a{-}Puente and John McGee and Reinhard C. Laubenbacher}, title = {An Algebra-Based Method for Inferring Gene Regulatory Networks}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {37}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-37}, doi = {10.1186/1752-0509-8-37}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Vera-LiconaJGML14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/VercammenLI14, author = {Dominique Vercammen and Filip Logist and Jan F. M. Van Impe}, title = {Dynamic estimation of specific fluxes in metabolic networks using non-linear dynamic optimization}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {132}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0132-0}, doi = {10.1186/S12918-014-0132-0}, timestamp = {Sat, 30 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/VercammenLI14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/VerdCJ14, author = {Berta Verd and Anton Crombach and Johannes Jaeger}, title = {Classification of transient behaviours in a time-dependent toggle switch model}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {43}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-43}, doi = {10.1186/1752-0509-8-43}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/VerdCJ14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/VermeerschWMS14, author = {Kathleen A. Vermeersch and Lijuan Wang and John F. McDonald and Mark P. Styczynski}, title = {Distinct metabolic responses of an ovarian cancer stem cell line}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {134}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0134-y}, doi = {10.1186/S12918-014-0134-Y}, timestamp = {Thu, 29 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/VermeerschWMS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WalshSD14, author = {Jesse R. Walsh and Taner Z. Sen and Julie A. Dickerson}, title = {A computational platform to maintain and migrate manual functional annotations for BioCyc databases}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {115}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0115-1}, doi = {10.1186/S12918-014-0115-1}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WalshSD14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WaltherHM14, author = {Georg R. Walther and Matthew Hartley and Maya Mincheva}, title = {GraTeLPy: graph-theoretic linear stability analysis}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {22}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-22}, doi = {10.1186/1752-0509-8-22}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WaltherHM14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WangCNCST14, author = {Charles C. N. Wang and Pei{-}Chun Chang and Ka{-}Lok Ng and Chun{-}Ming Chang and Phillip C.{-}Y. Sheu and Jeffrey J. P. Tsai}, title = {A model comparison study of the flowering time regulatory network in Arabidopsis}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {15}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-15}, doi = {10.1186/1752-0509-8-15}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WangCNCST14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WangKG14, author = {Xiaolei Wang and Hiroyuki Kuwahara and Xin Gao}, title = {Modeling {DNA} affinity landscape through two-round support vector regression with weighted degree kernels}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-5}}, pages = {S5}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S5-S5}, doi = {10.1186/1752-0509-8-S5-S5}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WangKG14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WangQ14, author = {Yijie Wang and Xiaoning Qian}, title = {Joint clustering of protein interaction networks through Markov random walk}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-1}}, pages = {S9}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S1-S9}, doi = {10.1186/1752-0509-8-S1-S9}, timestamp = {Mon, 01 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/WangQ14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WangSSWSS14, author = {Kaier Wang and Moira L. Steyn{-}Ross and D. A. Steyn{-}Ross and Marcus T. Wilson and Jamie W. Sleigh and Yoichi Shiraishi}, title = {Simulations of pattern dynamics for reaction-diffusion systems via {SIMULINK}}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {45}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-45}, doi = {10.1186/1752-0509-8-45}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WangSSWSS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WeaverKMPK14, author = {Daniel S. Weaver and Ingrid M. Keseler and Amanda Mackie and Ian T. Paulsen and Peter D. Karp}, title = {A genome-scale metabolic flux model of Escherichia coli {K-12} derived from the EcoCyc database}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {79}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-79}, doi = {10.1186/1752-0509-8-79}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WeaverKMPK14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WimalaratneGHNL14, author = {Sarala M. Wimalaratne and Pierre Grenon and Henning Hermjakob and Nicolas Le Nov{\`{e}}re and Camille Laibe}, title = {BioModels linked dataset}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {91}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0091-5}, doi = {10.1186/S12918-014-0091-5}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WimalaratneGHNL14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WollboldJMRW14, author = {Johannes Wollbold and Robert Jaster and Sarah M{\"{u}}ller and Katja Rateitschak and Olaf Wolkenhauer}, title = {Anti-inflammatory effects of reactive oxygen species - a multi-valued logical model validated by formal concept analysis}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {101}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0101-7}, doi = {10.1186/S12918-014-0101-7}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WollboldJMRW14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WuKLZ14, author = {Min Wu and Chee Keong Kwoh and Xiaoli Li and Jie Zheng}, title = {Finding trans-regulatory genes and protein complexes modulating meiotic recombination hotspots of human, mouse and yeast}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {107}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0107-1}, doi = {10.1186/S12918-014-0107-1}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WuKLZ14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WuWYC14, author = {Wei{-}Sheng Wu and Ming{-}Liang Wei and Chia{-}Ming Yeh and Darby Tien{-}Hao Chang}, title = {A regulatory similarity measure using the location information of transcription factor binding sites in Saccharomyces cerevisiae}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-5}}, pages = {S9}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S5-S9}, doi = {10.1186/1752-0509-8-S5-S9}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WuWYC14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/XiZWW14, author = {Yanping Xi and Yue Zhao and Li Wang and Fei Wang}, title = {Comparison on extreme pathways reveals nature of different biological processes}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-1}}, pages = {S10}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S1-S10}, doi = {10.1186/1752-0509-8-S1-S10}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/XiZWW14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YanW14, author = {Changhui Yan and Yingfeng Wang}, title = {A graph kernel method for DNA-binding site prediction}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-4}}, pages = {S10}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S4-S10}, doi = {10.1186/1752-0509-8-S4-S10}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/YanW14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YangGXW14, author = {Jialiang Yang and Stefan Gr{\"{u}}newald and Yifei Xu and Xiu{-}Feng Wan}, title = {Quartet-based methods to reconstruct phylogenetic networks}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {21}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-21}, doi = {10.1186/1752-0509-8-21}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/YangGXW14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YangSOCLN14, author = {Peng Yang and Xiaoquan Su and Le Ou{-}Yang and Hon Nian Chua and Xiaoli Li and Kang Ning}, title = {Microbial community pattern detection in human body habitats via ensemble clustering framework}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-4}}, pages = {S7}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S4-S7}, doi = {10.1186/1752-0509-8-S4-S7}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/YangSOCLN14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YangWHW14, author = {Tzu{-}Hsien Yang and Chung{-}Ching Wang and Po{-}Cheng Hung and Wei{-}Sheng Wu}, title = {cisMEP: an integrated repository of genomic epigenetic profiles and cis-regulatory modules in Drosophila}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-4}}, pages = {S8}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S4-S8}, doi = {10.1186/1752-0509-8-S4-S8}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/YangWHW14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YongMW14, author = {Chern Han Yong and Osamu Maruyama and Limsoon Wong}, title = {Discovery of small protein complexes from {PPI} networks with size-specific supervised weighting}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-5}}, pages = {S3}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S5-S3}, doi = {10.1186/1752-0509-8-S5-S3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/YongMW14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YoungRY14, author = {William Chad Young and Adrian E. Raftery and Ka Yee Yeung}, title = {Fast Bayesian inference for gene regulatory networks using ScanBMA}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {47}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-47}, doi = {10.1186/1752-0509-8-47}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/YoungRY14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YuY0LWY14, author = {Feng Yu and Zhi{-}Hao Yang and Nan Tang and Hong Lin and Jian Wang and Zhiwei Yang}, title = {Predicting protein complex in protein interaction network - a supervised learning based method}, journal = {{BMC} Syst. Biol.}, volume = {8}, number = {{S-3}}, pages = {S4}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-S3-S4}, doi = {10.1186/1752-0509-8-S3-S4}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/YuY0LWY14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZhangBW14, author = {Qingyang Zhang and Joanna E. Burdette and Ji{-}Ping Wang}, title = {Integrative network analysis of {TCGA} data for ovarian cancer}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {1338}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0136-9}, doi = {10.1186/S12918-014-0136-9}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ZhangBW14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZhangSYW14, title = {Retraction Note: Predicting new molecular targets for rhein using network pharmacology}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {105}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0105-3}, doi = {10.1186/S12918-014-0105-3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ZhangSYW14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZhaoK14, author = {Yun{-}Bo Zhao and J. Krishnan}, title = {mRNA translation and protein synthesis: an analysis of different modelling methodologies and a new {PBN} based approach}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {25}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-25}, doi = {10.1186/1752-0509-8-25}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ZhaoK14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZhengCCBXCN14, author = {Zhenzhen Zheng and Scott Christley and William T. Chiu and Ira L. Blitz and Xiaohui Xie and Ken W. Y. Cho and Qing Nie}, title = {Inference of the Xenopus tropicalis embryonic regulatory network and spatial gene expression patterns}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {3}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-3}, doi = {10.1186/1752-0509-8-3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ZhengCCBXCN14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZhuC14, author = {Wei Zhu and Yi{-}Ping Phoebe Chen}, title = {Computational developments in microRNA-regulated protein-protein interactions}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {14}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-14}, doi = {10.1186/1752-0509-8-14}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ZhuC14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZhuLH14, author = {Peican Zhu and Jinghang Liang and Jie Han}, title = {Gene perturbation and intervention in context-sensitive stochastic Boolean networks}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {60}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-60}, doi = {10.1186/1752-0509-8-60}, timestamp = {Sun, 04 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ZhuLH14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/AitkenA13, author = {Stuart Aitken and Ozgur E. Akman}, title = {Nested sampling for parameter inference in systems biology: application to an exemplar circadian model}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {72}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-72}, doi = {10.1186/1752-0509-7-72}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/AitkenA13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/AmaraCCPCFBP13, author = {Flavio Amara and Riccardo Colombo and Paolo Cazzaniga and Dario Pescini and Attila Csik{\'{a}}sz{-}Nagy and Marco Falconi and Daniela Besozzi and Paolo Plevani}, title = {In vivo and in silico analysis of {PCNA} ubiquitylation in the activation of the Post Replication Repair pathway in S. cerevisiae}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {24}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-24}, doi = {10.1186/1752-0509-7-24}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/AmaraCCPCFBP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/AzmiBBPLYDRSM13, author = {Asfar S. Azmi and Aliccia Bollig{-}Fischer and Bin Bao and Bum{-}Joon Park and Sun{-}Hye Lee and Gyu Yong{-}Song and Gregory Dyson and Chandan K. Reddy and Fazlul H. Sarkar and Ramzi M. Mohammad}, title = {Systems analysis reveals a transcriptional reversal of the mesenchymal phenotype induced by SNAIL-inhibitor {GN-25}}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {85}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-85}, doi = {10.1186/1752-0509-7-85}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/AzmiBBPLYDRSM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BackZB13, author = {Walter de Back and Roland Zimm and Lutz Brusch}, title = {Transdifferentiation of pancreatic cells by loss of contact-mediated signaling}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {77}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-77}, doi = {10.1186/1752-0509-7-77}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BackZB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BaeRCHKK13, author = {Taejeong Bae and Kyoohyoung Rho and Jin Woo Choi and Katsuhisa Horimoto and Wan Kyu Kim and Sunghoon Kim}, title = {Identification of upstream regulators for prognostic expression signature genes in colorectal cancer}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {86}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-86}, doi = {10.1186/1752-0509-7-86}, timestamp = {Fri, 06 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BaeRCHKK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BarbaDLL13, author = {Matthieu Barba and Rapha{\"{e}}l Dutoit and Christianne Legrain and Bernard Labedan}, title = {Identifying reaction modules in metabolic pathways: bioinformatic deduction and experimental validation of a new putative route in purine catabolism}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {99}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-99}, doi = {10.1186/1752-0509-7-99}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/BarbaDLL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BatagovYJTNK13, author = {Arsen O. Batagov and Aliaksandr A. Yarmishyn and Piroon Jenjaroenpun and Jovina Z. Tan and Yuichiro Nishida and Igor Kurochkin}, title = {Role of genomic architecture in the expression dynamics of long noncoding RNAs during differentiation of human neuroblastoma cells}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-3}}, pages = {S11}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S3-S11}, doi = {10.1186/1752-0509-7-S3-S11}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BatagovYJTNK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BaumlerMRP13, author = {David J. Baumler and Bing Ma and Jennifer L. Reed and Nicole T. Perna}, title = {Inferring ancient metabolism using ancestral core metabolic models of enterobacteria}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {46}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-46}, doi = {10.1186/1752-0509-7-46}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BaumlerMRP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BeiH13, author = {Yuanzhe Bei and Pengyu Hong}, title = {A novel approach to minimize false discovery rate in genome-wide data analysis}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-4}}, pages = {S1}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S4-S1}, doi = {10.1186/1752-0509-7-S4-S1}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BeiH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BershteynE13, author = {Anna Bershteyn and Philip A. Eckhoff}, title = {A model of {HIV} drug resistance driven by heterogeneities in host immunity and adherence patterns}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {11}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-11}, doi = {10.1186/1752-0509-7-11}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BershteynE13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BesshoSSSMWKDJB13, author = {Kazuhiko Bessho and Kumar Shanmukhappa and Rachel Sheridan and Pranavkumar Shivakumar and Reena Mourya and Stephanie Walters and Vivek Kaimal and Eric Dilbone and Anil G. Jegga and Jorge A. Bezerra}, title = {Integrative genomics identifies candidate microRNAs for pathogenesis of experimental biliary atresia}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {104}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-104}, doi = {10.1186/1752-0509-7-104}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BesshoSSSMWKDJB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BockmayrKGDB13, author = {Michael Bockmayr and Frederick Klauschen and Balazs Gy{\"{o}}rffy and Carsten Denkert and Jan Budczies}, title = {New network topology approaches reveal differential correlation patterns in breast cancer}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {78}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-78}, doi = {10.1186/1752-0509-7-78}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BockmayrKGDB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BogdalHKL13, author = {Marta N. Bogdal and Beata Hat and Marek Kochanczyk and Tomasz Lipniacki}, title = {Levels of pro-apoptotic regulator Bad and anti-apoptotic regulator Bcl-xL determine the type of the apoptotic logic gate}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {67}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-67}, doi = {10.1186/1752-0509-7-67}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BogdalHKL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BonnetCRSBZ13, author = {Eric Bonnet and Laurence Calzone and Daniel Rovera and Gautier Stoll and Emmanuel Barillot and Andrei Yu. Zinovyev}, title = {BiNoM 2.0, a Cytoscape plugin for accessing and analyzing pathways using standard systems biology formats}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {18}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-18}, doi = {10.1186/1752-0509-7-18}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BonnetCRSBZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BorgosBSEJBENV13, author = {Sven E. F. Borgos and Sergio Bordel and H{\aa}vard Sletta and Helga Ertesv{\aa}g and {\O}yvind M. Jakobsen and Per Bruheim and Trond E. Ellingsen and Jens Nielsen and Svein Valla}, title = {Mapping global effects of the anti-sigma factor MucA in Pseudomonas fluorescens {SBW25} through genome-scale metabolic modeling}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {19}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-19}, doi = {10.1186/1752-0509-7-19}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BorgosBSEJBENV13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BrenHDKA13, author = {Anat Bren and Yuval Hart and Erez Dekel and Daniel Koster and Uri Alon}, title = {The last generation of bacterial growth in limiting nutrient}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {27}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-27}, doi = {10.1186/1752-0509-7-27}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BrenHDKA13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BryantSP13, author = {William A. Bryant and Michael J. E. Sternberg and John W. Pinney}, title = {{AMBIENT:} Active Modules for Bipartite Networks - using high-throughput transcriptomic data to dissect metabolic response}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {26}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-26}, doi = {10.1186/1752-0509-7-26}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BryantSP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BuCJ13, author = {Jingde Bu and Xuebin Chi and Zhong Jin}, title = {{HSA:} {A} Heuristic Splice Alignment Tool}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-2}}, pages = {S10}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S2-S10}, doi = {10.1186/1752-0509-7-S2-S10}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BuCJ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BuchelRSWCKMSGGIKRWHHK0MZCSSLDN13, author = {Finja B{\"{u}}chel and Nicolas Rodriguez and Neil Swainston and Clemens Wrzodek and Tobias Czauderna and Roland Keller and Florian Mittag and Michael Schubert and Mihai Glont and Martin Golebiewski and Martijn P. van Iersel and Sarah M. Keating and Matthias Rall and Michael Wybrow and Henning Hermjakob and Michael Hucka and Douglas B. Kell and Wolfgang M{\"{u}}ller and Pedro Mendes and Andreas Zell and Claudine Chaouiya and Julio Saez{-}Rodriguez and Falk Schreiber and Camille Laibe and Andreas Dr{\"{a}}ger and Nicolas Le Nov{\`{e}}re}, title = {Path2Models: large-scale generation of computational models from biochemical pathway maps}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {116}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-116}, doi = {10.1186/1752-0509-7-116}, timestamp = {Thu, 03 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BuchelRSWCKMSGGIKRWHHK0MZCSSLDN13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BuddSWJZ13, author = {William T. Budd and Sarah Seashols and Danielle Weaver and Cyriac Joseph and Zendra E. Zehner}, title = {A networks method for ranking microRNA dysregulation in cancer}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-5}}, pages = {S3}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S5-S3}, doi = {10.1186/1752-0509-7-S5-S3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BuddSWJZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/CarreraJ13, author = {Javier Carrera and Alfonso Jaramillo}, title = {Automated design of bacterial genome sequences}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {108}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-108}, doi = {10.1186/1752-0509-7-108}, timestamp = {Mon, 03 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/CarreraJ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChangXBP13, author = {Roger L. Chang and Lei Xie and Philip E. Bourne and Bernhard O. Palsson}, title = {Antibacterial mechanisms identified through structural systems pharmacology}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {102}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-102}, doi = {10.1186/1752-0509-7-102}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChangXBP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChaouiyaBKNIRDBCKWGDPMKXJHKTNSH13, author = {Claudine Chaouiya and Duncan B{\'{e}}renguier and Sarah M. Keating and Aur{\'{e}}lien Naldi and Martijn P. van Iersel and Nicolas Rodriguez and Andreas Dr{\"{a}}ger and Finja B{\"{u}}chel and Thomas Cokelaer and Bryan M. Kowal and Benjamin Wicks and Emanuel J. V. Gon{\c{c}}alves and Julien Dorier and Michel Page and Pedro T. Monteiro and Axel von Kamp and Ioannis Xenarios and Hidde de Jong and Michael Hucka and Steffen Klamt and Denis Thieffry and Nicolas Le Nov{\`{e}}re and Julio Saez{-}Rodriguez and Tom{\'{a}}s Helikar}, title = {{SBML} qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {135}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-135}, doi = {10.1186/1752-0509-7-135}, timestamp = {Thu, 03 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChaouiyaBKNIRDBCKWGDPMKXJHKTNSH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChenYHL13, author = {Yi{-}Min Chen and Chun{-}Hui Yu and Chi{-}Chuan Hwang and Tsunglin Liu}, title = {{OMACC:} an Optical-Map-Assisted Contig Connector for improving de novo genome assembly}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-6}}, pages = {S7}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S6-S7}, doi = {10.1186/1752-0509-7-S6-S7}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChenYHL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChengC13, author = {Wan{-}Shu Cheng and Jung{-}Hsien Chiang}, title = {CGPredictor: a systematic integrated analytic tool for mining and examining genome-scale cancer independent prognostic epigenetic marker panels}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-6}}, pages = {S10}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S6-S10}, doi = {10.1186/1752-0509-7-S6-S10}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChengC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChengFSG13, author = {Chao Cheng and Yao Fu and Linsheng Shen and Mark Gerstein}, title = {Identification of yeast cell cycle regulated genes based on genomic features}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {70}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-70}, doi = {10.1186/1752-0509-7-70}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChengFSG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChengGSZML13, author = {Jie Cheng and Joel Greshock and Leming Shi and Shu Zheng and Alan Menius and Kwan Lee}, title = {Good practice guidelines for biomarker discovery from array data: a case study for breast cancer prognosis}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-4}}, pages = {S2}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S4-S2}, doi = {10.1186/1752-0509-7-S4-S2}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChengGSZML13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChiuCWW13, author = {Chia{-}Chun Chiu and Shih{-}Yao Chan and Chung{-}Ching Wang and Wei{-}Sheng Wu}, title = {Missing value imputation for microarray data: a comprehensive comparison study and a web tool}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-6}}, pages = {S12}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S6-S12}, doi = {10.1186/1752-0509-7-S6-S12}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChiuCWW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChoWZTNC13, author = {Hyunju Cho and Ming Wu and Linxia Zhang and Ryan Thompson and Aritro Nath and Christina Chan}, title = {Signaling dynamics of palmitate-induced {ER} stress responses mediated by {ATF4} in HepG2 cells}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {9}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-9}, doi = {10.1186/1752-0509-7-9}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChoWZTNC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChoiP13, author = {Jiin Choi and Taesung Park}, title = {Multivariate generalized multifactor dimensionality reduction to detect gene-gene interactions}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-6}}, pages = {S15}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S6-S15}, doi = {10.1186/1752-0509-7-S6-S15}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChoiP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChumnanpuenNN13, author = {Pramote Chumnanpuen and Intawat Nookaew and Jens Nielsen}, title = {Integrated analysis, transcriptome-lipidome, reveals the effects of INO-level {(INO2} and {INO4)} on lipid metabolism in yeast}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-3}}, pages = {S7}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S3-S7}, doi = {10.1186/1752-0509-7-S3-S7}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChumnanpuenNN13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/CoskunCLDOO13, author = {Sarp A. Coskun and A. Erc{\"{u}}ment {\c{C}}i{\c{c}}ek and Nicola Lai and Ranjan K. Dash and Z. Meral {\"{O}}zsoyoglu and Gultekin {\"{O}}zsoyoglu}, title = {An online model composition tool for system biology models}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {88}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-88}, doi = {10.1186/1752-0509-7-88}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/CoskunCLDOO13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/CrespoPJS13, author = {Isaac Crespo and Thanneer M. Perumal and Wiktor Jurkowski and Antonio del Sol}, title = {Detecting cellular reprogramming determinants by differential stability analysis of gene regulatory networks}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {140}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-140}, doi = {10.1186/1752-0509-7-140}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/CrespoPJS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/DeminSSCPFBD13, author = {Oleg O. Demin and Sergey V. Smirnov and Victor V. Sokolov and Lourdes Cucurull{-}Sanchez and C{\'{e}}sar Pichardo{-}Almarza and M. Victoria Flores and Neil Benson and Oleg V. Demin}, title = {Modeling of celiac disease immune response and the therapeutic effect of potential drugs}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {56}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-56}, doi = {10.1186/1752-0509-7-56}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/DeminSSCPFBD13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/DengGW13, author = {Yue Deng and Lin Gao and Bingbo Wang}, title = {ppiPre: predicting protein-protein interactions by combining heterogeneous features}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-2}}, pages = {S8}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S2-S8}, doi = {10.1186/1752-0509-7-S2-S8}, timestamp = {Wed, 20 Jul 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/DengGW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/DentN13, author = {Jennifer E. Dent and Christine Nardini}, title = {From desk to bed: Computational simulations provide indication for rheumatoid arthritis clinical trials}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {10}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-10}, doi = {10.1186/1752-0509-7-10}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/DentN13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/EbrahimLPH13, author = {Ali Ebrahim and Joshua A. Lerman and Bernhard {\O}. Palsson and Daniel R. Hyduke}, title = {COBRApy: COnstraints-Based Reconstruction and Analysis for Python}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {74}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-74}, doi = {10.1186/1752-0509-7-74}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/EbrahimLPH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/EisenhaberSW13, author = {Frank Eisenhaber and Wing{-}Kin Sung and Limsoon Wong}, title = {International Conference on Genome Informatics {(GIW} 2013) in Singapore: introduction to the systems biology contributions}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-6}}, pages = {I1}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S6-I1}, doi = {10.1186/1752-0509-7-S6-I1}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/EisenhaberSW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ErgulerPD13, author = {Kamil Erguler and Myrtani Pieri and Constantinos Deltas}, title = {A mathematical model of the unfolded protein stress response reveals the decision mechanism for recovery, adaptation and apoptosis}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {16}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-16}, doi = {10.1186/1752-0509-7-16}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ErgulerPD13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/FazekasKTMPDZSLFVCK13, author = {D{\'{a}}vid Fazekas and Mih{\'{a}}ly Koltai and D{\'{e}}nes T{\"{u}}rei and Dezs{\"{o}} M{\'{o}}dos and M{\'{a}}t{\'{e}} P{\'{a}}lfy and Zolt{\'{a}}n D{\'{u}}l and Lilian Zs{\'{a}}kai and M{\'{a}}t{\'{e}} Szalay{-}Beko and Katalin Lenti and Ill{\'{e}}s J. Farkas and Tibor Vellai and Peter Csermely and Tam{\'{a}}s Korcsm{\'{a}}ros}, title = {SignaLink 2 - a signaling pathway resource with multi-layered regulatory networks}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {7}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-7}, doi = {10.1186/1752-0509-7-7}, timestamp = {Sun, 04 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/FazekasKTMPDZSLFVCK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/FeltusFGS13, author = {F. Alex Feltus and Stephen P. Ficklin and Scott M. Gibson and Melissa C. Smith}, title = {Maximizing capture of gene co-expression relationships through pre-clustering of input expression samples: an Arabidopsis case study}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {44}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-44}, doi = {10.1186/1752-0509-7-44}, timestamp = {Wed, 05 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/FeltusFGS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/FlottmannKKK13, author = {Max Fl{\"{o}}ttmann and Falko Krause and Edda Klipp and Marcus Krantz}, title = {Reaction-contingency based bipartite Boolean modelling}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {58}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-58}, doi = {10.1186/1752-0509-7-58}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/FlottmannKKK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Freyre-GonzalezMMMPG13, author = {Julio A. Freyre{-}Gonz{\'{a}}lez and Alejandra M. Manjarrez{-}Casas and Enrique Merino and Mario Martinez{-}Nu{\~{n}}ez and Ernesto P{\'{e}}rez{-}Rueda and Rosa{-}Mar{\'{\i}}a Guti{\'{e}}rrez{-}R{\'{\i}}os}, title = {Lessons from the modular organization of the transcriptional regulatory network of Bacillus subtilis}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {127}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-127}, doi = {10.1186/1752-0509-7-127}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/Freyre-GonzalezMMMPG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GathererG13, author = {Derek Gatherer and Vashti Galpin}, title = {Rosen's (M, {R)} system in process algebra}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {128}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-128}, doi = {10.1186/1752-0509-7-128}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GathererG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Gelius-DietrichDFL13, author = {Gabriel Gelius{-}Dietrich and Abdelmoneim Amer Desouki and Claus Fritzemeier and Martin J. Lercher}, title = {sybil - Efficient constraint-based modelling in {R}}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {125}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-125}, doi = {10.1186/1752-0509-7-125}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Gelius-DietrichDFL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GhersiS13, author = {Dario Ghersi and Mona Singh}, title = {Disentangling function from topology to infer the network properties of disease genes}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {5}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-5}, doi = {10.1186/1752-0509-7-5}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GhersiS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GhoshBMAC13, author = {Soma Ghosh and Priyanka Baloni and Sumanta Mukherjee and Praveen Anand and Nagasuma R. Chandra}, title = {A multi-level multi-scale approach to study essential genes in Mycobacterium tuberculosis}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {132}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-132}, doi = {10.1186/1752-0509-7-132}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GhoshBMAC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GoebelsF13, author = {Florian Goebels and Dmitrij Frishman}, title = {Prediction of protein interaction types based on sequence and network features}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-6}}, pages = {S5}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S6-S5}, doi = {10.1186/1752-0509-7-S6-S5}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GoebelsF13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Gong13, author = {Haijun Gong}, title = {Analysis of intercellular signal transduction in the tumor microenvironment}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-3}}, pages = {S5}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S3-S5}, doi = {10.1186/1752-0509-7-S3-S5}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Gong13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GonzalesKSM13, author = {Kevin Gonzales and {\"{O}}m{\"{u}}r Kayik{\c{c}}i and David G. Schaeffer and Paul M. Magwene}, title = {Modeling mutant phenotypes and oscillatory dynamics in the Saccharomyces cerevisiae cAMP-PKA pathway}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {40}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-40}, doi = {10.1186/1752-0509-7-40}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GonzalesKSM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Greenfest-AllenMPS13, author = {Emily Greenfest{-}Allen and Jeffrey Malik and James Palis and Christian J. Stoeckert Jr.}, title = {Stat and interferon genes identified by network analysis differentially regulate primitive and definitive erythropoiesis}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {38}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-38}, doi = {10.1186/1752-0509-7-38}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Greenfest-AllenMPS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Guillen-GosalbezMASJ13, author = {Gonzalo Guill{\'{e}}n{-}Gos{\'{a}}lbez and Antoni Mir{\'{o}} and Rui Alves and Albert Sorribas and Laureano Jim{\'{e}}nez}, title = {Identification of regulatory structure and kinetic parameters of biochemical networks via mixed-integer dynamic optimization}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {113}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-113}, doi = {10.1186/1752-0509-7-113}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/Guillen-GosalbezMASJ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HakkinenTYIR13, author = {Antti H{\"{a}}kkinen and Huy Tran and Olli Yli{-}Harja and Brian P. Ingalls and Andre S. Ribeiro}, title = {Effects of multimerization on the temporal variability of protein complex abundance}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-1}}, pages = {S3}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S1-S3}, doi = {10.1186/1752-0509-7-S1-S3}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HakkinenTYIR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HasanKK13, author = {Md Mahmudul Hasan and Yusuf Kavurucu and Tamer Kahveci}, title = {A scalable method for discovering significant subnetworks}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-4}}, pages = {S3}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S4-S3}, doi = {10.1186/1752-0509-7-S4-S3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HasanKK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HassanFMHA13, author = {Syeda Hassan and Muhammad Farhan and Rahul Mangayil and Heikki Huttunen and Tommi Aho}, title = {Bioprocess data mining using regularized regression and random forests}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-1}}, pages = {S5}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S1-S5}, doi = {10.1186/1752-0509-7-S1-S5}, timestamp = {Thu, 13 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HassanFMHA13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HayashidaKSA13, author = {Morihiro Hayashida and Mayumi Kamada and Jiangning Song and Tatsuya Akutsu}, title = {Prediction of protein-RNA residue-base contacts using two-dimensional conditional random field with the lasso}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-2}}, pages = {S15}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S2-S15}, doi = {10.1186/1752-0509-7-S2-S15}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HayashidaKSA13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HeFW13, author = {Fei He and Vincent Fromion and Hans V. Westerhoff}, title = {(Im)Perfect robustness and adaptation of metabolic networks subject to metabolic and gene-expression regulation: marrying control engineering with metabolic control analysis}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {131}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-131}, doi = {10.1186/1752-0509-7-131}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HeFW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HettlingAHBGB13, author = {Hannes Hettling and David J. C. Alders and Jaap Heringa and Thomas W. Binsl and A. B. Johan Groeneveld and Johannes H. G. M. van Beek}, title = {Computational estimation of tricarboxylic acid cycle fluxes using noisy {NMR} data from cardiac biopsies}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {82}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-82}, doi = {10.1186/1752-0509-7-82}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HettlingAHBGB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HockNHWLTWPT13, author = {Sabrina Hock and Yen{-}Kar Ng and Jan Hasenauer and Dominik M. Wittmann and Dominik Lutter and Dietrich Tr{\"{u}}mbach and Wolfgang Wurst and Nilima Prakash and Fabian J. Theis}, title = {Sharpening of expression domains induced by transcription and microRNA regulation within a spatio-temporal model of mid-hindbrain boundary formation}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {48}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-48}, doi = {10.1186/1752-0509-7-48}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/HockNHWLTWPT13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HoffmannS13, author = {Max Hoffmann and Ulrich S. Schwarz}, title = {A kinetic model for RNA-interference of focal adhesions}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {2}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-2}, doi = {10.1186/1752-0509-7-2}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HoffmannS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HuLYCLHS13, author = {Yangfan Hu and Jinquan Li and Wenying Yan and Jiajia Chen and Yin Li and Guang Hu and Bairong Shen}, title = {Identifying novel glioma associated pathways based on systems biology level meta-analysis}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-2}}, pages = {S9}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S2-S9}, doi = {10.1186/1752-0509-7-S2-S9}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HuLYCLHS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HuMZ13, author = {Xingchi Hu and Chuang Ma and Yanhong Zhou}, title = {A novel two-layer {SVM} model in miRNA Drosha processing site detection}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-4}}, pages = {S4}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S4-S4}, doi = {10.1186/1752-0509-7-S4-S4}, timestamp = {Sun, 04 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HuMZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HuangWZ13, author = {Qiang Huang and Ling{-}Yun Wu and Xiang{-}Sun Zhang}, title = {Corbi: a new {R} package for biological network alignment and querying}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-2}}, pages = {S6}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S2-S6}, doi = {10.1186/1752-0509-7-S2-S6}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HuangWZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HusiSDMVOM13, author = {Holger Husi and Maria Sanchez{-}Ni{\~{n}}o and Christian Delles and William Mullen and Antonia Vlahou and Alberto Ortiz Arduan and Harald Mischak}, title = {A combinatorial approach of Proteomics and Systems Biology in unravelling the mechanisms of acute kidney injury {(AKI):} involvement of {NMDA} receptor {GRIN1} in murine {AKI}}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {110}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-110}, doi = {10.1186/1752-0509-7-110}, timestamp = {Tue, 22 Mar 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/HusiSDMVOM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/IberG13, author = {Dagmar Iber and Christian Geyter}, title = {Computational modelling of bovine ovarian follicle development}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {60}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-60}, doi = {10.1186/1752-0509-7-60}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/IberG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ImamND13, author = {Saheed Imam and Daniel R. Noguera and Timothy J. Donohue}, title = {Global insights into energetic and metabolic networks in Rhodobacter sphaeroides}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {89}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-89}, doi = {10.1186/1752-0509-7-89}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ImamND13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/IorioSB13, author = {Francesco Iorio and Julio Saez{-}Rodriguez and Diego di Bernardo}, title = {Network based elucidation of drug response: from modulators to targets}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {139}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-139}, doi = {10.1186/1752-0509-7-139}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/IorioSB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/IwataMTKGY13, author = {Hiroaki Iwata and Sayaka Mizutani and Yasuo Tabei and Masaaki Kotera and Susumu Goto and Yoshihiro Yamanishi}, title = {Inferring protein domains associated with drug side effects based on drug-target interaction network}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-6}}, pages = {S18}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S6-S18}, doi = {10.1186/1752-0509-7-S6-S18}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/IwataMTKGY13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/JinZ13, author = {Suoqin Jin and Xiufen Zou}, title = {Construction of the influenza {A} virus infection-induced cell-specific inflammatory regulatory network based on mutual information and optimization}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {105}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-105}, doi = {10.1186/1752-0509-7-105}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/JinZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/JohnD13, author = {Peter C. St. John and Francis J. Doyle}, title = {Estimating confidence intervals in predicted responses for oscillatory biological models}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {71}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-71}, doi = {10.1186/1752-0509-7-71}, timestamp = {Fri, 07 May 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/JohnD13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/JooPF13, author = {Jaewook Joo and Steven J. Plimpton and Jean{-}Loup Faulon}, title = {Statistical ensemble analysis for simulating extrinsic noise-driven response in NF-{\(\kappa\)}}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {45}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-45}, doi = {10.1186/1752-0509-7-45}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/JooPF13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/JordaSCPHGFAW13, author = {Joel Jord{\`{a}} and Camilo Suarez and Marc Carnicer and Angela ten Pierick and Joseph J. Heijnen and Walter M. van Gulik and Pau Ferrer and Joan Albiol and Aljoscha Wahl}, title = {Glucose-methanol co-utilization in Pichia pastoris studied by metabolomics and instationary \({}^{\mbox{13}}\)C flux analysis}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {17}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-17}, doi = {10.1186/1752-0509-7-17}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/JordaSCPHGFAW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KahramanogullariL13, author = {Ozan Kahramanogullari and James F. Lynch}, title = {Stochastic flux analysis of chemical reaction networks}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {133}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-133}, doi = {10.1186/1752-0509-7-133}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KahramanogullariL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KellerDTFZARNHPZD13, author = {Roland Keller and Alexander D{\"{o}}rr and Akito Tabira and Akira Funahashi and Michael J. Ziller and Richard R. Adams and Nicolas Rodriguez and Nicolas Le Nov{\`{e}}re and Noriko Hiroi and Hannes Planatscher and Andreas Zell and Andreas Dr{\"{a}}ger}, title = {The systems biology simulation core algorithm}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {55}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-55}, doi = {10.1186/1752-0509-7-55}, timestamp = {Thu, 03 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KellerDTFZARNHPZD13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KimHZ13, author = {Soo{-}Jin Kim and JungWoo Ha and Byoung{-}Tak Zhang}, title = {Constructing higher-order miRNA-mRNA interaction networks in prostate cancer via hypergraph-based learning}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {47}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-47}, doi = {10.1186/1752-0509-7-47}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/KimHZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KimSJLK13, author = {Dokyoon Kim and Hyunjung Shin and Je{-}Gun Joung and Su{-}Yeon Lee and Ju Han Kim}, title = {Intra-relation reconstruction from inter-relation: miRNA to gene expression}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-3}}, pages = {S8}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S3-S8}, doi = {10.1186/1752-0509-7-S3-S8}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KimSJLK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KlapaTTTM13, author = {Maria I. Klapa and Kalliopi Tsafou and Evangelos Theodoridis and Athanasios K. Tsakalidis and Nicholas K. Moschonas}, title = {Reconstruction of the experimentally supported human protein interactome: what can we learn?}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {96}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-96}, doi = {10.1186/1752-0509-7-96}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KlapaTTTM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KnupferBDN13, author = {Christian Kn{\"{u}}pfer and Clemens Beckstein and Peter Dittrich and Nicolas Le Nov{\`{e}}re}, title = {Structure, function, and behaviour of computational models in systems biology}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {43}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-43}, doi = {10.1186/1752-0509-7-43}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KnupferBDN13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KoteraTYMTKG13, author = {Masaaki Kotera and Yasuo Tabei and Yoshihiro Yamanishi and Yuki Moriya and Toshiaki Tokimatsu and Minoru Kanehisa and Susumu Goto}, title = {{KCF-S:} {KEGG} Chemical Function and Substructure for improved interpretability and prediction in chemical bioinformatics}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-6}}, pages = {S2}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S6-S2}, doi = {10.1186/1752-0509-7-S6-S2}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KoteraTYMTKG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KotzeASADWG13, author = {Helen L. Kotze and Emily G. Armitage and Kieran J. Sharkey and James William Allwood and Warwick B. Dunn and Kaye J. Williams and Royston Goodacre}, title = {A novel untargeted metabolomics correlation-based network analysis incorporating human metabolic reconstructions}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {107}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-107}, doi = {10.1186/1752-0509-7-107}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KotzeASADWG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KrengelHTAJ13, author = {Annette Krengel and Jan Hauth and Marja{-}Riitta Taskinen and Martin Adiels and Mats Jirstrand}, title = {A continuous-time adaptive particle filter for estimations under measurement time uncertainties with an application to a plasma-leucine mixed effects model}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {8}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-8}, doi = {10.1186/1752-0509-7-8}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KrengelHTAJ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KrinnerRLS13, author = {Axel Krinner and Ingo Roeder and Markus Loeffler and Markus Scholz}, title = {Merging concepts - coupling an agent-based model of hematopoietic stem cells with an {ODE} model of granulopoiesis}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {117}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-117}, doi = {10.1186/1752-0509-7-117}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KrinnerRLS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KumarBR13, author = {Gaurav Kumar and Edmond J. Breen and Shoba Ranganathan}, title = {Identification of ovarian cancer associated genes using an integrated approach in a Boolean framework}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {12}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-12}, doi = {10.1186/1752-0509-7-12}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KumarBR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KuoTT13, author = {Tien{-}Chueh Kuo and Tze{-}Feng Tian and Yufeng Jane Tseng}, title = {3Omics: a web-based systems biology tool for analysis, integration and visualization of human transcriptomic, proteomic and metabolomic data}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {64}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-64}, doi = {10.1186/1752-0509-7-64}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KuoTT13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KupersteinCPVCBZ13, author = {Inna Kuperstein and David P. A. Cohen and Stuart Pook and Eric Viara and Laurence Calzone and Emmanuel Barillot and Andrei Yu. Zinovyev}, title = {NaviCell: a web-based environment for navigation, curation and maintenance of large molecular interaction maps}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {100}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-100}, doi = {10.1186/1752-0509-7-100}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KupersteinCPVCBZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KutumovaZSK13, author = {Elena Kutumova and Andrei Yu. Zinovyev and Ruslan N. Sharipov and Fedor A. Kolpakov}, title = {Model composition through model reduction: a combined model of {CD95} and NF-{\(\kappa\)}}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {13}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-13}, doi = {10.1186/1752-0509-7-13}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/KutumovaZSK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LasherRM13, author = {Christopher D. Lasher and Padmavathy Rajagopalan and T. M. Murali}, title = {Summarizing cellular responses as biological process networks}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {68}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-68}, doi = {10.1186/1752-0509-7-68}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LasherRM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LawlerHBC13, author = {Katherine Lawler and Kim E. Hammond{-}Kosack and Alvis Brazma and Richard M. R. Coulson}, title = {Genomic clustering and co-regulation of transcriptional networks in the pathogenic fungus Fusarium graminearum}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {52}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-52}, doi = {10.1186/1752-0509-7-52}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LawlerHBC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LeeHLCCYHLXC13, author = {Yi{-}Ying Lee and Chih{-}Yuan Hsu and Ling{-}Jiun Lin and Chih{-}Chun Chang and Hsiao{-}Chun Cheng and Tsung{-}Hsien Yeh and Rei{-}Hsing Hu and Che Lin and Zhen Xie and Bor{-}Sen Chen}, title = {Systematic design methodology for robust genetic transistors based on {I/O} specifications via promoter-RBS libraries}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {109}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-109}, doi = {10.1186/1752-0509-7-109}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LeeHLCCYHLXC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LeePK13, author = {Minho Lee and Keunwan Park and Dongsup Kim}, title = {Interaction network among functional drug groups}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-3}}, pages = {S4}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S3-S4}, doi = {10.1186/1752-0509-7-S3-S4}, timestamp = {Thu, 05 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LeePK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LeonMP13, author = {Miguel Ponce de Leon and Francisco Montero and Juli Peret{\'{o}}}, title = {Solving gap metabolites and blocked reactions in genome-scale models: application to the metabolic network of Blattabacterium cuenoti}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {114}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-114}, doi = {10.1186/1752-0509-7-114}, timestamp = {Mon, 25 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LeonMP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiHZLW13, author = {Pengping Li and Xu Hua and Zhen Zhang and Jie Li and Jin Wang}, title = {Characterization of regulatory features of housekeeping and tissue-specific regulators within tissue regulatory networks}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {112}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-112}, doi = {10.1186/1752-0509-7-112}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiHZLW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiJQCV13, author = {Limin Li and Hao Jiang and Yushan Qiu and Wai{-}Ki Ching and Vassilios S. Vassiliadis}, title = {Discovery of metabolite biomarkers: flux analysis and reaction-reaction network approach}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-2}}, pages = {S13}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S2-S13}, doi = {10.1186/1752-0509-7-S2-S13}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiJQCV13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiLCW13, author = {Jingyao Li and Dongdong Lin and Hongbao Cao and Yu{-}Ping Wang}, title = {An improved sparse representation model with structural information for Multicolour Fluorescence In-Situ Hybridization {(M-FISH)} image classification}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-4}}, pages = {S5}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S4-S5}, doi = {10.1186/1752-0509-7-S4-S5}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiLCW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiLZXLZSQZCX13, author = {Ke{-}ning Li and Zi{-}hui Li and Ning Zhao and Yaoqun Xu and Yongjing Liu and Yuanshuai Zhou and Desi Shang and Fujun Qiu and Rui Zhang and Zhi{-}qiang Chang and Yan Xu}, title = {Functional analysis of microRNA and transcription factor synergistic regulatory network based on identifying regulatory motifs in non-small cell lung cancer}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {122}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-122}, doi = {10.1186/1752-0509-7-122}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/LiLZXLZSQZCX13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiN13, author = {Yifeng Li and Alioune Ngom}, title = {Sparse representation approaches for the classification of high-dimensional biological data}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-4}}, pages = {S6}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S4-S6}, doi = {10.1186/1752-0509-7-S4-S6}, timestamp = {Mon, 28 Nov 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/LiN13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiTSYXBMZW13, author = {Fuhai Li and Hua Tan and Jaykrishna Singh and Jian Yang and Xiaofeng Xia and Jiguang Bao and Jinwen Ma and Ming Zhan and Stephen T. C. Wong}, title = {A 3D multiscale model of cancer stem cell in tumor development}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-2}}, pages = {S12}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S2-S12}, doi = {10.1186/1752-0509-7-S2-S12}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiTSYXBMZW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiV13, author = {Pu Li and Quoc Dong Vu}, title = {Identification of parameter correlations for parameter estimation in dynamic biological models}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {91}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-91}, doi = {10.1186/1752-0509-7-91}, timestamp = {Mon, 12 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiV13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiangZSGZ13, author = {Shide Liang and Dandan Zheng and Daron M. Standley and Huarong Guo and Chi Zhang}, title = {A novel function prediction approach using protein overlap networks}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {61}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-61}, doi = {10.1186/1752-0509-7-61}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiangZSGZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiaoC13, author = {Vance Chiang{-}Chi Liao and Ming{-}Syan Chen}, title = {Efficient mining gapped sequential patterns for motifs in biological sequences}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-4}}, pages = {S7}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S4-S7}, doi = {10.1186/1752-0509-7-S4-S7}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiaoC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiebalMMLW13, author = {Ulf W. Liebal and Thomas Millat and Jon Marles{-}Wright and Richard J. Lewis and Olaf Wolkenhauer}, title = {Simulations of stressosome activation emphasize allosteric interactions between RsbR and RsbT}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {3}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-3}, doi = {10.1186/1752-0509-7-3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiebalMMLW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiuDCN13, author = {Yuanhua Liu and Valentina Devescovi and Suning Chen and Christine Nardini}, title = {Multilevel omic data integration in cancer cell lines: advanced annotation and emergent properties}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {14}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-14}, doi = {10.1186/1752-0509-7-14}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiuDCN13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiuYW13, author = {Juan Liu and Xinghuo Ye and Fang{-}Xiang Wu}, title = {Characterizing dynamic regulatory programs in mouse lung development and their potential association with tumourigenesis via miRNA-TF-mRNA circuits}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-2}}, pages = {S11}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S2-S11}, doi = {10.1186/1752-0509-7-S2-S11}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiuYW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiuZSY13, author = {Qi Liu and Shilin Zhao and Pei{-}Fang Su and Shyr Yu}, title = {Gene and isoform expression signatures associated with tumor stage in kidney renal clear cell carcinoma}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-5}}, pages = {S7}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S5-S7}, doi = {10.1186/1752-0509-7-S5-S7}, timestamp = {Sun, 12 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/LiuZSY13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LopezPN13, author = {Yosvany L{\'{o}}pez and Ashwini Patil and Kenta Nakai}, title = {Identification of novel motif patterns to decipher the promoter architecture of co-expressed genes in Arabidopsis thaliana}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-3}}, pages = {S10}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S3-S10}, doi = {10.1186/1752-0509-7-S3-S10}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LopezPN13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LopezYATTHVW13, author = {Luis D. Lopez and Jingyi Yu and Cecilia N. Arighi and Catalina O. Tudor and Manabu Torii and Hongzhan Huang and K. Vijay{-}Shanker and Cathy H. Wu}, title = {A framework for biomedical figure segmentation towards image-based document retrieval}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-4}}, pages = {S8}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S4-S8}, doi = {10.1186/1752-0509-7-S4-S8}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LopezYATTHVW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LouhimoLHLMRMBLNH13, author = {Riku Louhimo and Marko Laakso and Tuomas Heikkinen and Susanna Laitinen and Pekka Manninen and Vladimir Rogojin and Minna Miettinen and Carl Blomqvist and Jianjun Liu and Heli Nevanlinna and Sampsa Hautaniemi}, title = {Identification of genetic markers with synergistic survival effect in cancer}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-1}}, pages = {S2}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S1-S2}, doi = {10.1186/1752-0509-7-S1-S2}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LouhimoLHLMRMBLNH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MaCFHC13, author = {Chifeng Ma and Hung{-}I Harry Chen and Mario Flores and Yufei Huang and Yidong Chen}, title = {BRCA-Monet: a breast cancer specific drug treatment mode-of-action network for treatment effective prediction using large scale microarray database}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-5}}, pages = {S5}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S5-S5}, doi = {10.1186/1752-0509-7-S5-S5}, timestamp = {Mon, 27 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MaCFHC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MadarDBZPA13, author = {Daniel Madar and Erez Dekel and Anat Bren and Anat Zimmer and Ziv Porat and Uri Alon}, title = {Promoter activity dynamics in the lag phase of Escherichia coli}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {136}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-136}, doi = {10.1186/1752-0509-7-136}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MadarDBZPA13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MarchisioCWS13, author = {Mario A. Marchisio and Moreno Colaiacovo and Ellis Whitehead and J{\"{o}}rg Stelling}, title = {Modular, rule-based modeling for the design of eukaryotic synthetic gene circuits}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {42}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-42}, doi = {10.1186/1752-0509-7-42}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MarchisioCWS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Martinez-PasamarAMMMGV13, author = {Sara Martinez{-}Pasamar and Elena Abad and Beatriz Moreno and Nieves V{\'{e}}lez de Mendiz{\'{a}}bal and Ivan Martinez{-}Forero and Jordi Garc{\'{\i}}a{-}Ojalvo and Pablo Villoslada}, title = {Dynamic cross-regulation of antigen-specific effector and regulatory {T} cell subpopulations and microglia in brain autoimmunity}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {34}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-34}, doi = {10.1186/1752-0509-7-34}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Martinez-PasamarAMMMGV13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MassucciDGMCMM13, author = {Francesco Alessandro Massucci and Mauro DiNuzzo and Federico Giove and Bruno Maraviglia and Isaac P{\'{e}}rez Castillo and Enzo Marinari and Andrea De Martino}, title = {Energy metabolism and glutamate-glutamine cycle in the brain: a stoichiometric modeling perspective}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {103}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-103}, doi = {10.1186/1752-0509-7-103}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MassucciDGMCMM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MatsuokaMKENHGSLWWFKK13, author = {Yukiko Matsuoka and Hiromi Matsumae and Manami Katoh and Amie J. Eisfeld and Gabriele Neumann and Takeshi Hase and Samik Ghosh and Jason E. Shoemaker and Tiago J. S. Lopes and Tokiko Watanabe and Shinji Watanabe and Satoshi Fukuyama and Hiroaki Kitano and Yoshihiro Kawaoka}, title = {A comprehensive map of the influenza {A} virus replication cycle}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {97}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-97}, doi = {10.1186/1752-0509-7-97}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MatsuokaMKENHGSLWWFKK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MayburdB13, author = {Anatoly L. Mayburd and Ancha V. Baranova}, title = {Knowledge-based compact disease models identify new molecular players contributing to early-stage Alzheimer's disease}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {121}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-121}, doi = {10.1186/1752-0509-7-121}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MayburdB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MimoriNKTOSYN13, author = {Takahiro Mimori and Naoki Nariai and Kaname Kojima and Mamoru Takahashi and Akira Ono and Yukuto Sato and Yumi Yamaguchi{-}Kabata and Masao Nagasaki}, title = {iSVP: an integrated structural variant calling pipeline from high-throughput sequencing data}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-6}}, pages = {S8}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S6-S8}, doi = {10.1186/1752-0509-7-S6-S8}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/MimoriNKTOSYN13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MisraS13, author = {Ashish Misra and Ganesh Sriram}, title = {Network component analysis provides quantitative insights on an Arabidopsis transcription factor-gene regulatory network}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {126}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-126}, doi = {10.1186/1752-0509-7-126}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MisraS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MohammadiSG13, author = {Shahin Mohammadi and Shankar Subramaniam and Ananth Grama}, title = {Inferring the effective TOR-dependent network: a computational study in yeast}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {84}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-84}, doi = {10.1186/1752-0509-7-84}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MohammadiSG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MuellerBPM13, author = {Thomas J. Mueller and Bertram M. Berla and Himadri B. Pakrasi and Costas D. Maranas}, title = {Rapid construction of metabolic models for a family of Cyanobacteria using a multiple source annotation workflow}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {142}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-142}, doi = {10.1186/1752-0509-7-142}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MuellerBPM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/NakatsuiAK13, author = {Masahiko Nakatsui and Michihiro Araki and Akihiko Kondo}, title = {An approach for dynamical network reconstruction of simple network motifs}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-6}}, pages = {S4}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S6-S4}, doi = {10.1186/1752-0509-7-S6-S4}, timestamp = {Sun, 04 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/NakatsuiAK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/NieY13, author = {Yaling Nie and Jingkai Yu}, title = {Mining breast cancer genes with a network based noise-tolerant approach}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {49}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-49}, doi = {10.1186/1752-0509-7-49}, timestamp = {Wed, 19 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/NieY13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/NilufarMLP13, author = {Sharmin Nilufar and Anne Morrow and Jonathan Lee and Theodore J. Perkins}, title = {FiloDetect: automatic detection of filopodia from fluorescence microscopy images}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {66}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-66}, doi = {10.1186/1752-0509-7-66}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/NilufarMLP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/NishioOIYUMT13, author = {Yousuke Nishio and Soichi Ogishima and Masao Ichikawa and Yohei Yamada and Yoshihiro Usuda and Tadashi Masuda and Hiroshi Tanaka}, title = {Analysis of l-glutamic acid fermentation by using a dynamic metabolic simulation model of Escherichia coli}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {92}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-92}, doi = {10.1186/1752-0509-7-92}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/NishioOIYUMT13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/NohSSHKJCKC13, author = {Kyungchul Noh and Kyung Soon Shin and Dongkwan Shin and Jae Yeon Hwang and June Sic Kim and Joon Hwan Jang and Chun Kee Chung and Jun Soo Kwon and Kwang{-}Hyun Cho}, title = {Impaired coupling of local and global functional feedbacks underlies abnormal synchronization and negative symptoms of schizophrenia}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {30}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-30}, doi = {10.1186/1752-0509-7-30}, timestamp = {Sun, 04 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/NohSSHKJCKC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/OguzLCWBT13, author = {Cihan Oguz and Teeraphan Laomettachit and Katherine C. Chen and Layne T. Watson and William T. Baumann and John J. Tyson}, title = {Optimization and model reduction in the high dimensional parameter space of a budding yeast cell cycle model}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {53}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-53}, doi = {10.1186/1752-0509-7-53}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/OguzLCWBT13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/OliveiraBBFIZ13, author = {Juliana Oliveira and Anderson de Brito and Carla Braconi and Caio de Melo Freire and Atila Iamarino and Paolo de Andrade Zanotto}, title = {Modularity and evolutionary constraints in a baculovirus gene regulatory network}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {87}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-87}, doi = {10.1186/1752-0509-7-87}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/OliveiraBBFIZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/OoiM13, author = {Hsu Kiang Ooi and Lan Ma}, title = {Modeling heterogeneous responsiveness of intrinsic apoptosis pathway}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {65}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-65}, doi = {10.1186/1752-0509-7-65}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/OoiM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/OsterlundNBN13, author = {Tobias {\"{O}}sterlund and Intawat Nookaew and Sergio Bordel and Jens Nielsen}, title = {Mapping condition-dependent regulation of metabolism in yeast through genome-scale modeling}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {36}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-36}, doi = {10.1186/1752-0509-7-36}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/OsterlundNBN13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PalssonHBZJOSPV13, author = {Sirus Palsson and Timothy P. Hickling and Erica L. Bradshaw{-}Pierce and Michael Zager and Karin Jooss and Peter O'Brien and Mary E. Spilker and Bernhard {\O}. Palsson and Paolo Vicini}, title = {The development of a fully-integrated immune response model {(FIRM)} simulator of the immune response through integration of multiple subset models}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {95}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-95}, doi = {10.1186/1752-0509-7-95}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PalssonHBZJOSPV13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PertsovskayaADGV13, author = {Inna Pertsovskaya and Elena Abad and N{\'{u}}ria Domedel{-}Puig and Jordi Garc{\'{\i}}a{-}Ojalvo and Pablo Villoslada}, title = {Transient oscillatory dynamics of interferon beta signaling in macrophages}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {59}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-59}, doi = {10.1186/1752-0509-7-59}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PertsovskayaADGV13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PeyTCP13, author = {Jon Pey and Luis Tobalina and Joaqu{\'{\i}}n Prada J. de Cisneros and Francisco J. Planes}, title = {A network-based approach for predicting key enzymes explaining metabolite abundance alterations in a disease phenotype}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {62}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-62}, doi = {10.1186/1752-0509-7-62}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PeyTCP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PeyVRBP13, author = {Jon Pey and Kaspar Valgepea and Angel Rubio and John E. Beasley and Francisco J. Planes}, title = {Integrating gene and protein expression data with genome-scale metabolic networks to infer functional pathways}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {134}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-134}, doi = {10.1186/1752-0509-7-134}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PeyVRBP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PinnaHFFK13, author = {Andrea Pinna and Sandra Heise and Robert J. Flassig and Alberto de la Fuente and Steffen Klamt}, title = {Reconstruction of large-scale regulatory networks based on perturbation graphs and transitive reduction: improved methods and their evaluation}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {73}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-73}, doi = {10.1186/1752-0509-7-73}, timestamp = {Mon, 08 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/PinnaHFFK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PodsiadloWPRW13, author = {Agnieszka Podsiadlo and Mariusz Wrzesien and Wieslaw Paja and Witold R. Rudnicki and Bartek Wilczynski}, title = {Active enhancer positions can be accurately predicted from chromatin marks and collective sequence motif data}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-6}}, pages = {S16}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S6-S16}, doi = {10.1186/1752-0509-7-S6-S16}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/PodsiadloWPRW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PokhilkoMM13, author = {Alexandra V. Pokhilko and Paloma Mas and Andrew J. Millar}, title = {Modelling the widespread effects of {TOC1} signalling on the plant circadian clock and its outputs}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {23}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-23}, doi = {10.1186/1752-0509-7-23}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PokhilkoMM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PradhanDP13, author = {Meeta Pradhan and Akshay Desai and Mathew J. Palakal}, title = {Systems biology approach to stage-wise characterization of epigenetic genes in lung adenocarcinoma}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {141}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-141}, doi = {10.1186/1752-0509-7-141}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PradhanDP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/QiWSHSXXC13, author = {Ran Qi and Dengyuan Wu and Li Sheng and Donald Henson and Arnold M. Schwartz and Eric Xu and Kai Xing and Dechang Chen}, title = {On an ensemble algorithm for clustering cancer patient data}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-4}}, pages = {S9}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S4-S9}, doi = {10.1186/1752-0509-7-S4-S9}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/QiWSHSXXC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/QureshiS13, author = {Rehman Qureshi and Ahmet Sacan}, title = {Weighted set enrichment of gene expression data}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-4}}, pages = {S10}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S4-S10}, doi = {10.1186/1752-0509-7-S4-S10}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/QureshiS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/RanLFLXLSCJLL13, author = {Jihua Ran and Hui Li and Jianfeng Fu and Ling Liu and Yanchao Xing and Xiumei Li and Hongming Shen and Yan Chen and Xiaofang Jiang and Yan Li and Huiwu Li}, title = {Construction and analysis of the protein-protein interaction network related to essential hypertension}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {32}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-32}, doi = {10.1186/1752-0509-7-32}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/RanLFLXLSCJLL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/RanolaLLH13, author = {John M. O. Ranola and Peter Langfelder and Kenneth Lange and Steve Horvath}, title = {Cluster and propensity based approximation of a network}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {21}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-21}, doi = {10.1186/1752-0509-7-21}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/RanolaLLH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/RasheedRB13, author = {Zeehasham Rasheed and Huzefa Rangwala and Daniel Barbar{\'{a}}}, title = {16S rRNA metagenome clustering and diversity estimation using locality sensitive hashing}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-4}}, pages = {S11}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S4-S11}, doi = {10.1186/1752-0509-7-S4-S11}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/RasheedRB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/RauJN13, author = {Andrea Rau and Florence Jaffr{\'{e}}zic and Gr{\'{e}}gory Nuel}, title = {Joint estimation of causal effects from observational and intervention gene expression data}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {111}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-111}, doi = {10.1186/1752-0509-7-111}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/RauJN13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/RaySY13, author = {Debjit Ray and Yongchun Su and Ping Ye}, title = {Dynamic modeling of yeast meiotic initiation}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {37}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-37}, doi = {10.1186/1752-0509-7-37}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/RaySY13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/RenWLW13, author = {Jun Ren and Jianxin Wang and Min Li and Lusheng Wang}, title = {Identifying protein complexes based on density and modularity in protein-protein interaction network}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-4}}, pages = {S12}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S4-S12}, doi = {10.1186/1752-0509-7-S4-S12}, timestamp = {Fri, 21 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/RenWLW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/RiemerRS13, author = {S. Alexander Riemer and Rene Rex and Dietmar Schomburg}, title = {A metabolite-centric view on flux distributions in genome-scale metabolic models}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {33}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-33}, doi = {10.1186/1752-0509-7-33}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/RiemerRS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Rodriguez-FernandezRKB13, author = {Maria Rodriguez{-}Fernandez and Markus Rehberg and Andreas Kremling and Julio R. Banga}, title = {Simultaneous model discrimination and parameter estimation in dynamic models of cellular systems}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {76}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-76}, doi = {10.1186/1752-0509-7-76}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Rodriguez-FernandezRKB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SaithongRKCSNSMC13, author = {Treenut Saithong and Oratai Rongsirikul and Saowalak Kalapanulak and Porntip Chiewchankaset and Wanatsanan Siriwat and Supatcharee Netrphan and Malinee Suksangpanomrung and Asawin Meechai and Supapon Cheevadhanarak}, title = {Starch biosynthesis in cassava: a genome-based pathway reconstruction and its exploitation in data integration}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {75}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-75}, doi = {10.1186/1752-0509-7-75}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SaithongRKCSNSMC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SalernoCMBA13, author = {Luca Salerno and Carlo Cosentino and Alessio Merola and Declan G. Bates and Francesco Amato}, title = {Validation of a model of the {GAL} regulatory system via robustness analysis of its bistability characteristics}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {39}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-39}, doi = {10.1186/1752-0509-7-39}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SalernoCMBA13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Sands13, author = {Tim Sands}, title = {Annual acknowledgement of reviewers}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {35}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-35}, doi = {10.1186/1752-0509-7-35}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Sands13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SantraKK13, author = {Tapesh Santra and Walter Kolch and Boris N. Kholodenko}, title = {Integrating Bayesian variable selection with Modular Response Analysis to infer biochemical network topology}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {57}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-57}, doi = {10.1186/1752-0509-7-57}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SantraKK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SchaadtSHH13, author = {Nadine S. Schaadt and Anke Steinbach and Rolf W. Hartmann and Volkhard Helms}, title = {Rule-based regulatory and metabolic model for Quorum sensing in P. aeruginosa}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {81}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-81}, doi = {10.1186/1752-0509-7-81}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SchaadtSHH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SchittlerAB13, author = {Daniella Schittler and Frank Allg{\"{o}}wer and Rob J. De Boer}, title = {A new model to simulate and analyze proliferating cell populations in BrdU labeling experiments}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-1}}, pages = {S4}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S1-S4}, doi = {10.1186/1752-0509-7-S1-S4}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SchittlerAB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SchonbachSTR13, author = {Christian Sch{\"{o}}nbach and Bairong Shen and Tin Wee Tan and Shoba Ranganathan}, title = {InCoB2013 introduces Systems Biology as a major conference theme}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-3}}, pages = {S1}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S3-S1}, doi = {10.1186/1752-0509-7-S3-S1}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SchonbachSTR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SenVR13, author = {Partho Sen and Henri J. Vial and Ovidiu Radulescu}, title = {Kinetic modelling of phospholipid synthesis in Plasmodium knowlesi unravels crucial steps and relative importance of multiple pathways}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {123}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-123}, doi = {10.1186/1752-0509-7-123}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SenVR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ShangGXCMOG13, author = {Lei Shang and David P. Gardner and Weijia Xu and Jamie J. Cannone and Daniel P. Miranker and Stuart Ozer and Robin Ray Gutell}, title = {Two accurate sequence, structure, and phylogenetic template-based {RNA} alignment systems}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-4}}, pages = {S13}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S4-S13}, doi = {10.1186/1752-0509-7-S4-S13}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/ShangGXCMOG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ShiGCSHCX13, author = {Xu Shi and Jinghua Gu and Xi Chen and Ayesha N. Shajahan and Leena Hilakivi{-}Clarke and Robert Clarke and Jianhua Xuan}, title = {mAPC-GibbsOS: an integrated approach for robust identification of gene regulatory networks}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-5}}, pages = {S4}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S5-S4}, doi = {10.1186/1752-0509-7-S5-S4}, timestamp = {Thu, 19 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ShiGCSHCX13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ShiXZXLWZJGL13, author = {Hongbo Shi and Juan Xu and Guangde Zhang and Liangde Xu and Chunquan Li and Li Wang and Zheng Zhao and Wei Jiang and Zheng Guo and Xia Li}, title = {Walking the interactome to identify human miRNA-disease associations through the functional link between miRNA targets and disease genes}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {101}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-101}, doi = {10.1186/1752-0509-7-101}, timestamp = {Fri, 19 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ShiXZXLWZJGL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ShinCSHS13, author = {Yong{-}Jun Shin and Kai{-}Yuan Chen and Ali H. Sayed and Brandon Hencey and Xiling Shen}, title = {Post-translational regulation enables robust p53 regulation}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {83}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-83}, doi = {10.1186/1752-0509-7-83}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ShinCSHS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SimchaYAG13, author = {David M. Simcha and Laurent Younes and Martin J. Aryee and Donald Geman}, title = {Identification of direction in gene networks from expression and methylation}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {118}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-118}, doi = {10.1186/1752-0509-7-118}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/SimchaYAG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SlawekA13, author = {Janusz Slawek and Tomasz Arodz}, title = {{ENNET:} inferring large gene regulatory networks from expression data using gradient boosting}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {106}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-106}, doi = {10.1186/1752-0509-7-106}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SlawekA13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SmithS13, author = {Graham R. Smith and Daryl P. Shanley}, title = {Computational modelling of the regulation of Insulin signalling by oxidative stress}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {41}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-41}, doi = {10.1186/1752-0509-7-41}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SmithS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SohnKLK13, author = {Kyung{-}Ah Sohn and Dokyoon Kim and Jaehyun Lim and Ju Han Kim}, title = {Relative impact of multi-layered genomic data on gene expression phenotypes in serous ovarian tumors}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-6}}, pages = {S9}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S6-S9}, doi = {10.1186/1752-0509-7-S6-S9}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SohnKLK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SrivastavaHBPA13, author = {Prashant K. Srivastava and Richard P. Hull and Jacques Behmoaras and Enrico Petretto and Timothy J. Aitman}, title = {JunD/AP1 regulatory network analysis during macrophage activation in a rat model of crescentic glomerulonephritis}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {93}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-93}, doi = {10.1186/1752-0509-7-93}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SrivastavaHBPA13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/StobbeSTRKM13, author = {Miranda D. Stobbe and Morris A. Swertz and Ines Thiele and Trebor Rengaw and Antoine H. C. van Kampen and Perry D. Moerland}, title = {Consensus and conflict cards for metabolic pathway databases}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {50}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-50}, doi = {10.1186/1752-0509-7-50}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/StobbeSTRKM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TabbaaNSHJ13, author = {Omar P. Tabbaa and German Nudelman and Stuart C. Sealfon and Fernand Hayot and Ciriyam Jayaprakash}, title = {Noise propagation through extracellular signaling leads to fluctuations in gene expression}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {94}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-94}, doi = {10.1186/1752-0509-7-94}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/TabbaaNSHJ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TabeiY13, author = {Yasuo Tabei and Yoshihiro Yamanishi}, title = {Scalable prediction of compound-protein interactions using minwise hashing}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-6}}, pages = {S3}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S6-S3}, doi = {10.1186/1752-0509-7-S6-S3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/TabeiY13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TangYCLKS13, author = {Yifei Tang and Wenying Yan and Jiajia Chen and Cheng Luo and Antti Kaipia and Bairong Shen}, title = {Identification of novel microRNA regulatory pathways associated with heterogeneous prostate cancer}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-3}}, pages = {S6}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S3-S6}, doi = {10.1186/1752-0509-7-S3-S6}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/TangYCLKS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TchitchekETJGBTWFTLNMSWBKK13, author = {Nicolas Tchitchek and Amie J. Eisfeld and Jennifer Tisoncik{-}Go and Laurence Josset and Lisa E. Gralinski and Christophe B{\'{e}}cavin and Susan C. Tilton and Bobbie{-}Jo M. Webb{-}Robertson and Martin T. Ferris and Allison L. Totura and Chengjun Li and Gabriele Neumann and Thomas O. Metz and Richard D. Smith and Katrina M. Waters and Ralph S. Baric and Yoshihiro Kawaoka and Michael G. Katze}, title = {Specific mutations in {H5N1} mainly impact the magnitude and velocity of the host response in mice}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {69}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-69}, doi = {10.1186/1752-0509-7-69}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/TchitchekETJGBTWFTLNMSWBKK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TessmerJCKC13, author = {Oliver L. Tessmer and Yuhua Jiao and Jeffrey A. Cruz and David M. Kramer and Jin Chen}, title = {Functional approach to high-throughput plant growth analysis}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-6}}, pages = {S17}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S6-S17}, doi = {10.1186/1752-0509-7-S6-S17}, timestamp = {Fri, 18 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/TessmerJCKC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TianFMM13, author = {Zhongyuan Tian and Adrien Faur{\'{e}} and Hirotada Mori and Hiroshi Matsuno}, title = {Identification of key regulators in glycogen utilization in E. coli based on the simulations from a hybrid functional Petri net model}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-6}}, pages = {S1}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S6-S1}, doi = {10.1186/1752-0509-7-S6-S1}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/TianFMM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TorchalaCKB13, author = {Mieczyslaw Torchala and Przemyslaw Chelminiak and Michal Kurzynski and Paul A. Bates}, title = {RaTrav: a tool for calculating mean first-passage times on biochemical networks}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {130}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-130}, doi = {10.1186/1752-0509-7-130}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/TorchalaCKB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TreloarSHMLMB13, author = {Katrina K. Treloar and Matthew J. Simpson and Parvathi Haridas and Kerry J. Manton and David I. Leavesley and Donald L. S. McElwain and Ruth E. Baker}, title = {Multiple types of data are required to identify the mechanisms influencing the spatial expansion of melanoma cell colonies}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {137}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-137}, doi = {10.1186/1752-0509-7-137}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/TreloarSHMLMB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TrifonovPFR13, author = {Vladimir Trifonov and Laura Pasqualucci and Riccardo Dalla Favera and Raul Rabadan}, title = {MutComFocal: an integrative approach to identifying recurrent and focal genomic alterations in tumor samples}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {25}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-25}, doi = {10.1186/1752-0509-7-25}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/TrifonovPFR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TrifonovPTFR13, author = {Vladimir Trifonov and Laura Pasqualucci and Enrico Tiacci and Brunangelo Falini and Raul Rabadan}, title = {{SAVI:} a statistical algorithm for variant frequency identification}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-2}}, pages = {S2}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S2-S2}, doi = {10.1186/1752-0509-7-S2-S2}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/TrifonovPTFR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/UdyavarHCZTLLCSSLFEEMQ13, author = {Akshata R. Udyavar and Megan D. Hoeksema and Jonathan E. Clark and Yong Zou and Zuojian Tang and Zhiguo Li and Ming Li and Heidi Chen and Alexander R. Statnikov and Yu Shyr and Daniel C. Liebler and John K. Field and Rosana Eisenberg and Lourdes Estrada and Pierre P. Massion and Vito Quaranta}, title = {Co-expression network analysis identifies Spleen Tyrosine Kinase {(SYK)} as a candidate oncogenic driver in a subset of small-cell lung cancer}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-5}}, pages = {S1}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S5-S1}, doi = {10.1186/1752-0509-7-S5-S1}, timestamp = {Sun, 12 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/UdyavarHCZTLLCSSLFEEMQ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/VafaeeRBJ13, author = {Fatemeh Vafaee and Daniela Rosu and Fiona Broackes{-}Carter and Igor Jurisica}, title = {Novel semantic similarity measure improves an integrative approach to predicting gene functional associations}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {22}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-22}, doi = {10.1186/1752-0509-7-22}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/VafaeeRBJ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Vazquez13, author = {Alexei Vazquez}, title = {Optimization of personalized therapies for anticancer treatment}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {31}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-31}, doi = {10.1186/1752-0509-7-31}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Vazquez13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Vital-LopezWR13, author = {Francisco G. Vital{-}Lopez and Anders Wallqvist and Jaques Reifman}, title = {Bridging the gap between gene expression and metabolic phenotype via kinetic models}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {63}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-63}, doi = {10.1186/1752-0509-7-63}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Vital-LopezWR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/VogtCS13, author = {Torsten Vogt and Tobias Czauderna and Falk Schreiber}, title = {Translation of {SBGN} maps: Process Description to Activity Flow}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {115}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-115}, doi = {10.1186/1752-0509-7-115}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/VogtCS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WangCWW13, author = {Hsiuying Wang and Chia{-}Chun Chiu and Yi{-}Ching Wu and Wei{-}Sheng Wu}, title = {Shrinkage regression-based methods for microarray missing value imputation}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-6}}, pages = {S11}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S6-S11}, doi = {10.1186/1752-0509-7-S6-S11}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WangCWW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WangLCHLCC13, author = {Yu{-}Chao Wang and Che Lin and Ming{-}Ta Chuang and Wen{-}Ping Hsieh and Chung{-}Yu Lan and Yung{-}Jen Chuang and Bor{-}Sen Chen}, title = {Interspecies protein-protein interaction network construction for characterization of host-pathogen interactions: a Candida albicans-zebrafish interaction study}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {79}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-79}, doi = {10.1186/1752-0509-7-79}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WangLCHLCC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WangPXLP13, author = {Jianxin Wang and Xiaoqing Peng and Qianghua Xiao and Min Li and Yi Pan}, title = {An effective method for refining predicted protein complexes based on protein activity and the mechanism of protein complex formation}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {28}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-28}, doi = {10.1186/1752-0509-7-28}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WangPXLP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WangVHPW13, author = {Qinghua Wang and Keerthi Venkataramanan and Hongzhan Huang and Eleftherios T. Papoutsakis and Cathy H. Wu}, title = {Transcription factors and genetic circuits orchestrating the complex, multilayered response of Clostridium acetobutylicum to butanol and butyrate stress}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {120}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-120}, doi = {10.1186/1752-0509-7-120}, timestamp = {Wed, 10 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/WangVHPW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WangXEFZ13, author = {Vicky Wang and Li Xi and Ahmed Enayetallah and Eric Fauman and Daniel Ziemek}, title = {GeneTopics - interpretation of gene sets via literature-driven topic models}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-5}}, pages = {S10}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S5-S10}, doi = {10.1186/1752-0509-7-S5-S10}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/WangXEFZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WangZC13, author = {Yong Wang and Xiang{-}Sun Zhang and Luonan Chen}, title = {Computational systems biology in the big data era}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-2}}, pages = {S1}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S2-S1}, doi = {10.1186/1752-0509-7-S2-S1}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WangZC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WangZL13, author = {Jing Wang and Dabing Zhang and Jing Li}, title = {{PREAL:} prediction of allergenic protein by maximum Relevance Minimum Redundancy (mRMR) feature selection}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-5}}, pages = {S9}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S5-S9}, doi = {10.1186/1752-0509-7-S5-S9}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WangZL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WeberB13, author = {Marc Weber and Javier Buceta}, title = {Dynamics of the quorum sensing switch: stochastic and non-stationary effects}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {6}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-6}, doi = {10.1186/1752-0509-7-6}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WeberB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WeberHVGZD13, author = {Michael Weber and Sebastian Henkel and Sebastian Vlaic and Reinhard Guthke and Everardus J. van Zoelen and Dominik Driesch}, title = {Inference of dynamical gene-regulatory networks based on time-resolved multi-stimuli multi-experiment data applying NetGenerator {V2.0}}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {1}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-1}, doi = {10.1186/1752-0509-7-1}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WeberHVGZD13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WeberSKGZ13, author = {Michael Weber and Ana M. Sotoca and Peter Kupfer and Reinhard Guthke and Everardus J. van Zoelen}, title = {Dynamic modelling of microRNA regulation during mesenchymal stem cell differentiation}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {124}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-124}, doi = {10.1186/1752-0509-7-124}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WeberSKGZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WiditaM13, author = {Chasanah Kusumastuti Widita and Osamu Maruyama}, title = {PPSampler2: Predicting protein complexes more accurately and efficiently by sampling}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-6}}, pages = {S14}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S6-S14}, doi = {10.1186/1752-0509-7-S6-S14}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WiditaM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Williams-DeVaneRHBHGE13, author = {ClarLynda R. Williams{-}DeVane and David M. Reif and Elaine Cohen Hubal and Pierre R. Bushel and Edward E. Hudgens and Jane E. Gallagher and Stephen W. Edwards}, title = {Decision tree-based method for integrating gene expression, demographic, and clinical data to determine disease endotypes}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {119}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-119}, doi = {10.1186/1752-0509-7-119}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/Williams-DeVaneRHBHGE13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WinklerF13, author = {Jessica M. Winkler and Howard S. Fox}, title = {Transcriptome meta-analysis reveals a central role for sex steroids in the degeneration of hippocampal neurons in Alzheimer's disease}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {51}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-51}, doi = {10.1186/1752-0509-7-51}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WinklerF13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WinterbachMRWR13, author = {Wynand Winterbach and Piet Van Mieghem and Marcel J. T. Reinders and Huijuan Wang and Dick de Ridder}, title = {Topology of molecular interaction networks}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {90}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-90}, doi = {10.1186/1752-0509-7-90}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WinterbachMRWR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WintermuteLS13, author = {Edwin H. Wintermute and Tami D. Lieberman and Pamela A. Silver}, title = {An objective function exploiting suboptimal solutions in metabolic networks}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {98}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-98}, doi = {10.1186/1752-0509-7-98}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WintermuteLS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WrzodekBRDZ13, author = {Clemens Wrzodek and Finja B{\"{u}}chel and Manuel Ruff and Andreas Dr{\"{a}}ger and Andreas Zell}, title = {Precise generation of systems biology models from {KEGG} pathways}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {15}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-15}, doi = {10.1186/1752-0509-7-15}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WrzodekBRDZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WuGAJ13, author = {Chao Wu and Ranga Chandra Gudivada and Bruce J. Aronow and Anil G. Jegga}, title = {Computational drug repositioning through heterogeneous network clustering}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-5}}, pages = {S6}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S5-S6}, doi = {10.1186/1752-0509-7-S5-S6}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WuGAJ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WuSN13, author = {Chengkun Wu and Jean{-}Marc Schwartz and Goran Nenadic}, title = {PathNER: a tool for systematic identification of biological pathway mentions in the literature}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-3}}, pages = {S2}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S3-S2}, doi = {10.1186/1752-0509-7-S3-S2}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WuSN13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WuSZT13, author = {Qianqian Wu and Kate Smith{-}Miles and Tianshou Zhou and Tianhai Tian}, title = {Stochastic modelling of biochemical systems of multi-step reactions using a simplified two-variable model}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-4}}, pages = {S14}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S4-S14}, doi = {10.1186/1752-0509-7-S4-S14}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WuSZT13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/XiangQQH13, author = {Zuoshuang Xiang and Tingting Qin and Zhaohui S. Qin and Yongqun He}, title = {A genome-wide MeSH-based literature mining system predicts implicit gene-to-gene relationships and networks}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-3}}, pages = {S9}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S3-S9}, doi = {10.1186/1752-0509-7-S3-S9}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/XiangQQH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/XuYTSWLL13, author = {Huayong Xu and Hui Yu and Kang Tu and Qianqian Shi and Chaochun Wei and Yuan{-}Yuan Li and Yi{-}Xue Li}, title = {cGRNB: a web server for building combinatorial gene regulatory networks through integrated engineering of seed-matching sequence information and gene expression datasets}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-2}}, pages = {S7}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S2-S7}, doi = {10.1186/1752-0509-7-S2-S7}, timestamp = {Thu, 27 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/XuYTSWLL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YangDMHJPD13, author = {Ruoting Yang and Bernie J. Daigle Jr. and Seid Y. Muhie and Rasha Hammamieh and Marti Jett and Linda R. Petzold and Francis J. Doyle III}, title = {Core modular blood and brain biomarkers in social defeat mouse model for post traumatic stress disorder}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {80}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-80}, doi = {10.1186/1752-0509-7-80}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/YangDMHJPD13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YangW13, author = {Tzu{-}Hsien Yang and Wei{-}Sheng Wu}, title = {Inferring functional transcription factor-gene binding pairs by integrating transcription factor binding data with transcription factor knockout data}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-6}}, pages = {S13}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S6-S13}, doi = {10.1186/1752-0509-7-S6-S13}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/YangW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YangZC13, author = {Zhiyuan Yang and Yan Zhang and Luonan Chen}, title = {Investigation of anti-cancer mechanisms by comparative analysis of naked mole rat and rat}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-2}}, pages = {S5}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S2-S5}, doi = {10.1186/1752-0509-7-S2-S5}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/YangZC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YinV13, author = {Weiwei Yin and Eberhard O. Voit}, title = {Function and design of the Nox1 system in vascular smooth muscle cells}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {20}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-20}, doi = {10.1186/1752-0509-7-20}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/YinV13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YlipaaY0N13, author = {Antti Ylip{\"{a}}{\"{a}} and Olli Yli{-}Harja and Wei Zhang and Matti Nykter}, title = {Characterization of aberrant pathways across human cancers}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-1}}, pages = {S1}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S1-S1}, doi = {10.1186/1752-0509-7-S1-S1}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/YlipaaY0N13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YoshidaMKK13, author = {Kenta Yoshida and Kazuya Maeda and Hiroyuki Kusuhara and Akihiko Konagaya}, title = {Estimation of feasible solution space using Cluster Newton Method: application to pharmacokinetic analysis of irinotecan with physiologically-based pharmacokinetic models}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-3}}, pages = {S3}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S3-S3}, doi = {10.1186/1752-0509-7-S3-S3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/YoshidaMKK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YousofshahiOLH13, author = {Mona Yousofshahi and Michael Orshansky and Kyongbum Lee and Soha Hassoun}, title = {Probabilistic strain optimization under constraint uncertainty}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {29}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-29}, doi = {10.1186/1752-0509-7-29}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/YousofshahiOLH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YousofshahiUSH13, author = {Mona Yousofshahi and Ehsan Ullah and Russell Stern and Soha Hassoun}, title = {MC\({}^{\mbox{3}}\): a steady-state model and constraint consistency checker for biochemical networks}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {129}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-129}, doi = {10.1186/1752-0509-7-129}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/YousofshahiUSH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YuLLZ13, author = {Hui Yu and Chen{-}Ching Lin and Yuan{-}Yuan Li and Zhongming Zhao}, title = {Dynamic protein interaction modules in human hepatocellular carcinoma progression}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-5}}, pages = {S2}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S5-S2}, doi = {10.1186/1752-0509-7-S5-S2}, timestamp = {Thu, 27 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/YuLLZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YvertONIFSO13, author = {Ga{\"{e}}l Yvert and Shinsuke Ohnuki and Satoru Nogami and Yasutaka Imanaga and Steffen Fehrmann and Joseph Schacherer and Yoshikazu Ohya}, title = {Single-cell phenomics reveals intra-species variation of phenotypic noise in yeast}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {54}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-54}, doi = {10.1186/1752-0509-7-54}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/YvertONIFSO13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZhangGS13, author = {Xia Zhang and M. Heather West Greenlee and Jeanne M. Serb}, title = {EnRICH: Extraction and Ranking using Integration and Criteria Heuristics}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {4}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-4}, doi = {10.1186/1752-0509-7-4}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ZhangGS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZhangLLLLLSDHX13, author = {Hao Zhang and Zhi Li and Yanpu Li and Yuanning Liu and Junxin Liu and Xin Li and Tingjie Shen and Yunna Duan and Minggang Hu and Dong Xu}, title = {A computational method for predicting regulation of human microRNAs on the influenza virus genome}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-2}}, pages = {S3}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S2-S3}, doi = {10.1186/1752-0509-7-S2-S3}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/ZhangLLLLLSDHX13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZhangWMD13, author = {Fan Zhang and Mu Wang and Tran Michael and Renee Drabier}, title = {Novel alternative splicing isoform biomarkers identification from high-throughput plasma proteomics profiling of breast cancer}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-5}}, pages = {S8}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S5-S8}, doi = {10.1186/1752-0509-7-S5-S8}, timestamp = {Fri, 04 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/ZhangWMD13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZhangZDS13, author = {Shaoqiang Zhang and Xiguo Zhou and Chuanbin Du and Zhengchang Su}, title = {{SPIC:} {A} novel similarity metric for comparing transcription factor binding site motifs based on information contents}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-2}}, pages = {S14}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S2-S14}, doi = {10.1186/1752-0509-7-S2-S14}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ZhangZDS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZhangZWZ13, author = {Junhua Zhang and Shi{-}Hua Zhang and Yong Wang and Xiang{-}Sun Zhang}, title = {Identification of mutated core cancer modules by integrating somatic mutation, copy number variation, and gene expression data}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-2}}, pages = {S4}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S2-S4}, doi = {10.1186/1752-0509-7-S2-S4}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ZhangZWZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZhouRHGJFYWW13, author = {Hufeng Zhou and Javad Rezaei and Hugo Willy and Shangzhi Gao and Jingjing Jin and Mengyuan Fan and Chern Han Yong and Michal Wozniak and Limsoon Wong}, title = {Stringent DDI-based Prediction of H. sapiens-M. tuberculosis H37Rv Protein-Protein Interactions}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-6}}, pages = {S6}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S6-S6}, doi = {10.1186/1752-0509-7-S6-S6}, timestamp = {Mon, 16 Nov 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/ZhouRHGJFYWW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZhouVWWWBO13, author = {Yi Zhou and Alexei Vazquez and Aaron Wise and Tomoko Warita and Katsuhiko Warita and Ziv Bar{-}Joseph and Zolt{\'{a}}n N. Oltvai}, title = {Carbon catabolite repression correlates with the maintenance of near invariant molecular crowding in proliferating E. coli cells}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {138}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-138}, doi = {10.1186/1752-0509-7-138}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ZhouVWWWBO13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Alam-NazkiK12, author = {Aiman Alam{-}Nazki and Jawahar Krishnan}, title = {An investigation of spatial signal transduction in cellular networks}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {83}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-83}, doi = {10.1186/1752-0509-6-83}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Alam-NazkiK12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/AlshalalfaBGMA12, author = {Mohammed Alshalalfa and Gary D. Bader and Anna Goldenberg and Quaid Morris and Reda Alhajj}, title = {Detecting microRNAs of high influence on protein functional interaction networks: a prostate cancer case study}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {112}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-112}, doi = {10.1186/1752-0509-6-112}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/AlshalalfaBGMA12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/AslamS12, author = {Naveed Aslam and Harel Z. Shouval}, title = {Regulation of cytoplasmic polyadenylation can generate a bistable switch}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {12}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-12}, doi = {10.1186/1752-0509-6-12}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/AslamS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/AuleyWJK12, author = {Mark Mc Auley and Darren J. Wilkinson and Janette Jones and Thomas B. L. Kirkwood}, title = {A whole-body mathematical model of cholesterol metabolism and its age-associated dysregulation}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {130}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-130}, doi = {10.1186/1752-0509-6-130}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/AuleyWJK12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BazzaniHH12, author = {Susanna Bazzani and Andreas Hoppe and Hermann{-}Georg Holzh{\"{u}}tter}, title = {Network-based assessment of the selectivity of metabolic drug targets in Plasmodium falciparum with respect to human liver metabolism}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {118}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-118}, doi = {10.1186/1752-0509-6-118}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BazzaniHH12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Beguerisse-DiazHLBD12, author = {Mariano Beguerisse{-}D{\'{\i}}az and Mercedes C. Hern{\'{a}}ndez{-}G{\'{o}}mez and Alessandro M. Lizzul and Mauricio Barahona and Radhika Desikan}, title = {Compound stress response in stomatal closure: a mathematical model of {ABA} and ethylene interaction in guard cells}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {146}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-146}, doi = {10.1186/1752-0509-6-146}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Beguerisse-DiazHLBD12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BeisserGKFSHDKDM12, author = {Daniela Beisser and Markus A. Grohme and Joachim Kopka and Marcus Frohme and Ralph O. Schill and Steffen Hengherr and Thomas Dandekar and Gunnar W. Klau and Marcus T. Dittrich and Tobias M{\"{u}}ller}, title = {Integrated pathway modules using time-course metabolic profiles and {EST} data from Milnesium tardigradum}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {72}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-72}, doi = {10.1186/1752-0509-6-72}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/BeisserGKFSHDKDM12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Ben-HamoE12, author = {Rotem Ben{-}Hamo and Sol Efroni}, title = {Biomarker robustness reveals the {PDGF} network as driving disease outcome in ovarian cancer patients in multiple studies}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {3}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-3}, doi = {10.1186/1752-0509-6-3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Ben-HamoE12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BiliourisBSK12, author = {Konstantinos Biliouris and David Babson and Claudia Schmidt{-}Dannert and Yiannis N. Kaznessis}, title = {Stochastic simulations of a synthetic bacteria-yeast ecosystem}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {58}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-58}, doi = {10.1186/1752-0509-6-58}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BiliourisBSK12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BirtwistleRKADHKOK12, author = {Marc R. Birtwistle and Jens Rauch and Anatoly Kiyatkin and Edita Aksamitiene and Maciej Dobrzynski and Jan B. Hoek and Walter Kolch and Babatunde A. Ogunnaike and Boris N. Kholodenko}, title = {Emergence of bimodal cell population responses from the interplay between analog single-cell signaling and protein expression noise}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {109}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-109}, doi = {10.1186/1752-0509-6-109}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BirtwistleRKADHKOK12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BoeleOT12, author = {Joost Boele and Brett G. Olivier and Bas Teusink}, title = {FAME, the Flux Analysis and Modeling Environment}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {8}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-8}, doi = {10.1186/1752-0509-6-8}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BoeleOT12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BosiaOBCC12, author = {Carla Bosia and Matteo Osella and Mariama El Baroudi and Davide Cor{\`{a}} and Michele Caselle}, title = {Gene autoregulation via intronic microRNAs and its functions}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {131}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-131}, doi = {10.1186/1752-0509-6-131}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BosiaOBCC12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BravoOME12, author = {Maria Bravo and Thomas Orfeo and Kenneth G. Mann and Stephen J. Everse}, title = {Modeling of human factor Va inactivation by activated protein {C}}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {45}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-45}, doi = {10.1186/1752-0509-6-45}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BravoOME12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BrettnerM12, author = {Leandra M. Brettner and Joanna Masel}, title = {Protein stickiness, rather than number of functional protein-protein interactions, predicts expression noise and plasticity in yeast}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {128}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-128}, doi = {10.1186/1752-0509-6-128}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BrettnerM12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BrownL12, author = {Sherry{-}Ann Brown and Leslie M. Loew}, title = {Computational analysis of calcium signaling and membrane electrophysiology in cerebellar Purkinje neurons associated with ataxia}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {70}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-70}, doi = {10.1186/1752-0509-6-70}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/BrownL12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ByrneDS12, author = {David Byrne and Alexandra Dumitriu and Daniel Segr{\`{e}}}, title = {Comparative multi-goal tradeoffs in systems engineering of microbial metabolism}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {127}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-127}, doi = {10.1186/1752-0509-6-127}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ByrneDS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/CaiHGLKW12, author = {Hong Cai and Changjin Hong and Jianying Gu and Timothy G. Lilburn and Rui Kuang and Yufeng Wang}, title = {Module-based subnetwork alignments reveal novel transcriptional regulators in malaria parasite Plasmodium falciparum}, journal = {{BMC} Syst. Biol.}, volume = {6}, number = {{S-3}}, pages = {S5}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-S3-S5}, doi = {10.1186/1752-0509-6-S3-S5}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/CaiHGLKW12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/CaiWZ012, author = {Bingjing Cai and Haiying Wang and Huiru Zheng and Hui Wang}, title = {Detection of protein complexes from affinity purification/mass spectrometry data}, journal = {{BMC} Syst. Biol.}, volume = {6}, number = {{S-3}}, pages = {S4}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-S3-S4}, doi = {10.1186/1752-0509-6-S3-S4}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/CaiWZ012.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/CarbonellFPF12, author = {Pablo Carbonell and Davide Fichera and Shashi Bhushan Pandit and Jean{-}Loup Faulon}, title = {Enumerating metabolic pathways for the production of heterologous target chemicals in chassis organisms}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {10}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-10}, doi = {10.1186/1752-0509-6-10}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/CarbonellFPF12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/CaspetaSANN12, author = {Luis Caspeta and Saeed Shoaie and Rasmus Agren and Intawat Nookaew and Jens Nielsen}, title = {Genome-scale metabolic reconstructions of Pichia stipitis and Pichia pastoris and in silico evaluation of their potentials}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {24}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-24}, doi = {10.1186/1752-0509-6-24}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/CaspetaSANN12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChavaliBTJPP12, author = {Arvind K. Chavali and Anna S. Blazier and Jose L. Tlaxca and Paul A. Jensen and Richard D. Pearson and Jason A. Papin}, title = {Metabolic network analysis predicts efficacy of FDA-approved drugs targeting the causative agent of a neglected tropical disease}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {27}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-27}, doi = {10.1186/1752-0509-6-27}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChavaliBTJPP12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChemmangattuvalappilTB12, author = {Nishanth G. Chemmangattuvalappil and Keith Task and Ipsita Banerjee}, title = {An integer optimization algorithm for robust identification of non-linear gene regulatory networks}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {119}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-119}, doi = {10.1186/1752-0509-6-119}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChemmangattuvalappilTB12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChenH12, author = {Bor{-}Sen Chen and Chih{-}Yuan Hsu}, title = {Robust synchronization control scheme of a population of nonlinear stochastic synthetic genetic oscillators under intrinsic and extrinsic molecular noise via quorum sensing}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {136}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-136}, doi = {10.1186/1752-0509-6-136}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChenH12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChenJQC12, author = {Xi Chen and Hao Jiang and Yushan Qiu and Wai{-}Ki Ching}, title = {On optimal control policy for probabilistic Boolean network: a state reduction approach}, journal = {{BMC} Syst. Biol.}, volume = {6}, number = {{S-1}}, pages = {S8}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-S1-S8}, doi = {10.1186/1752-0509-6-S1-S8}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChenJQC12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChenPRSMSS12, author = {Zhengzhang Chen and Kanchana Padmanabhan and Andrea M. Rocha and Yekaterina Shpanskaya and James R. Mihelcic and Kathleen Scott and Nagiza F. Samatova}, title = {Spice: discovery of phenotype-determining component interplays}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {40}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-40}, doi = {10.1186/1752-0509-6-40}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/ChenPRSMSS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChenWSZ12, author = {Xin Chen and Qiong Wu and Ruimin Sun and Louxin Zhang}, title = {Two combinatorial optimization problems for {SNP} discovery using base-specific cleavage and mass spectrometry}, journal = {{BMC} Syst. Biol.}, volume = {6}, number = {{S-2}}, pages = {S5}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-S2-S5}, doi = {10.1186/1752-0509-6-S2-S5}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChenWSZ12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChenYYAS12, author = {Liang{-}Chun Chen and Hsiang{-}Yuan Yeh and Cheng{-}Yu Yeh and Carlos Arias and Von{-}Wun Soo}, title = {Identifying co-targets to fight drug resistance based on a random walk model}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {5}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-5}, doi = {10.1186/1752-0509-6-5}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChenYYAS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChenZHWZ12, author = {Chen Chen and Junfei Zhao and Qiang Huang and Rui{-}Sheng Wang and Xiang{-}Sun Zhang}, title = {Inferring domain-domain interactions from protein-protein interactions in the complex network conformation}, journal = {{BMC} Syst. Biol.}, volume = {6}, number = {{S-1}}, pages = {S7}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-S1-S7}, doi = {10.1186/1752-0509-6-S1-S7}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChenZHWZ12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChickarmaneOP12, author = {Vijay Chickarmane and Victor Olariu and Carsten Peterson}, title = {Probing the role of stochasticity in a model of the embryonic stem cell - heterogeneous gene expression and reprogramming efficiency}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {98}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-98}, doi = {10.1186/1752-0509-6-98}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChickarmaneOP12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChouV12, author = {I{-}Chun Chou and Eberhard O. Voit}, title = {Estimation of dynamic flux profiles from metabolic time series data}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {84}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-84}, doi = {10.1186/1752-0509-6-84}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChouV12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChungL12, author = {Bevan Chung and Dong{-}Yup Lee}, title = {Computational codon optimization of synthetic gene for protein expression}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {134}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-134}, doi = {10.1186/1752-0509-6-134}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChungL12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ClarkDTKM12, author = {Neil R. Clark and Ruth Dannenfelser and Christopher M. Tan and Michael E. Komosinski and Avi Ma'ayan}, title = {Sets2Networks: network inference from repeated observations of sets}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {89}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-89}, doi = {10.1186/1752-0509-6-89}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ClarkDTKM12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/CoskunQCCCYJDLOO12, author = {Sarp A. Coskun and Xinjian Qi and Ali Cakmak and En Cheng and A. Erc{\"{u}}ment {\c{C}}i{\c{c}}ek and Lei Yang and Rishiraj Jadeja and Ranjan K. Dash and Nicola Lai and Gultekin {\"{O}}zsoyoglu and Z. Meral {\"{O}}zsoyoglu}, title = {PathCase-SB: integrating data sources and providing tools for systems biology research}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {67}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-67}, doi = {10.1186/1752-0509-6-67}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/CoskunQCCCYJDLOO12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/CreamerSACTBHBHHP12, author = {Matthew S. Creamer and Edward C. Stites and Meraj Aziz and James A. Cahill and Chin Wee Tan and Michael E. Berens and Haiyong Han and Kimberly J. Bussey and Daniel D. Von Hoff and William S. Hlavacek and Richard G. Posner}, title = {Specification, annotation, visualization and simulation of a large rule-based model for {ERBB} receptor signaling}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {107}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-107}, doi = {10.1186/1752-0509-6-107}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/CreamerSACTBHBHHP12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/CrespoRJKS12, author = {Isaac Crespo and Kirsten Roomp and Wiktor Jurkowski and Hiroaki Kitano and Antonio del Sol}, title = {Gene regulatory network analysis supports inflammation as a key neurodegeneration process in prion disease}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {132}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-132}, doi = {10.1186/1752-0509-6-132}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/CrespoRJKS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/CroftSJG12, author = {Larry Croft and Damian Szklarczyk and Lars Juhl Jensen and Jan Gorodkin}, title = {Multiple independent analyses reveal only transcription factors as an enriched functional class associated with microRNAs}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {90}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-90}, doi = {10.1186/1752-0509-6-90}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/CroftSJG12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/CrownAA12, author = {Scott B. Crown and Woo Ahn and Maciek R. Antoniewicz}, title = {Rational design of \({}^{\mbox{13}}\)C-labeling experiments for metabolic flux analysis in mammalian cells}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {43}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-43}, doi = {10.1186/1752-0509-6-43}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/CrownAA12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/CruzHDWPHDG12, author = {Ana Luisa B. Cruz and Marit Hebly and Giang{-}Huong Duong and Sebastian A. Wahl and Jack T. Pronk and Joseph J. Heijnen and Pascale A. S. Daran{-}Lapujade and Walter M. van Gulik}, title = {Similar temperature dependencies of glycolytic enzymes: an evolutionary adaptation to temperature dynamics?}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {151}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-151}, doi = {10.1186/1752-0509-6-151}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/CruzHDWPHDG12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/DAuriaDGKWCSLPH12, author = {Kevin M. D'Auria and Gina M. Donato and Mary C. Gray and Glynis L. Kolling and Cirle A. Warren and Lauren M. Cave and Michael D. Solga and Joanne A. Lannigan and Jason A. Papin and Erik L. Hewlett}, title = {Systems analysis of the transcriptional response of human ileocecal epithelial cells to Clostridium difficile toxins and effects on cell cycle control}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {2}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-2}, doi = {10.1186/1752-0509-6-2}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/DAuriaDGKWCSLPH12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/DaiLLZ12, author = {Chao Dai and Wenyuan Li and Juan Liu and Xianghong Jasmine Zhou}, title = {Integrating many co-splicing networks to reconstruct splicing regulatory modules}, journal = {{BMC} Syst. Biol.}, volume = {6}, number = {{S-1}}, pages = {S17}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-S1-S17}, doi = {10.1186/1752-0509-6-S1-S17}, timestamp = {Fri, 19 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/DaiLLZ12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/DasY12, author = {Jishnu Das and Haiyuan Yu}, title = {{HINT:} High-quality protein interactomes and their applications in understanding human disease}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {92}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-92}, doi = {10.1186/1752-0509-6-92}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/DasY12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/DongC12, author = {Chao{-}Yi Dong and Kwang{-}Hyun Cho}, title = {An optimally evolved connective ratio of neural networks that maximizes the occurrence of synchronized bursting behavior}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {23}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-23}, doi = {10.1186/1752-0509-6-23}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/DongC12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/DrawertEH12, author = {Brian Drawert and Stefan Engblom and Andreas Hellander}, title = {{URDME:} a modular framework for stochastic simulation of reaction-transport processes in complex geometries}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {76}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-76}, doi = {10.1186/1752-0509-6-76}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/DrawertEH12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/EssackMSB12, author = {Magbubah Essack and Cameron MacPherson and Sebastian Schmeier and Vladimir B. Bajic}, title = {Identification of estrogen responsive genes using esophageal squamous cell carcinoma {(ESCC)} as a model}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {135}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-135}, doi = {10.1186/1752-0509-6-135}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/EssackMSB12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/FacchettiZA12, author = {Giuseppe Facchetti and Mattia Zampieri and Claudio Altafini}, title = {Predicting and characterizing selective multiple drug treatments for metabolic diseases and cancer}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {115}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-115}, doi = {10.1186/1752-0509-6-115}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/FacchettiZA12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/FanGPLTPL12, author = {ShengJun Fan and Qiang Geng and Zhen{-}Yu Pan and Xin Li and Lu Tie and Yan Pan and Xuejun Li}, title = {Clarifying off-target effects for torcetrapib using network pharmacology and reverse docking approach}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {152}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-152}, doi = {10.1186/1752-0509-6-152}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/FanGPLTPL12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/FengXCT12, author = {Xueyang Feng and You Xu and Yixin Chen and Yinjie J. Tang}, title = {MicrobesFlux: a web platform for drafting metabolic models from the {KEGG} database}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {94}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-94}, doi = {10.1186/1752-0509-6-94}, timestamp = {Thu, 12 Jan 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/FengXCT12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/FloresLYSRLVLM12, author = {Ricardo J. Flores and Yiting Li and Alexander Yu and Jianhe Shen and Pulivarthi H. Rao and Serrine S. Lau and Marina Vannucci and Ching C. Lau and Tsz{-}Kwong Man}, title = {A systems biology approach reveals common metastatic pathways in osteosarcoma}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {50}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-50}, doi = {10.1186/1752-0509-6-50}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/FloresLYSRLVLM12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/FuJZX12, author = {Yan Fu and Xiaoshan Jiang and Hang Zhang and Jianhua Xing}, title = {A strategy to study pathway cross-talks of cells under repetitive exposure to stimuli}, journal = {{BMC} Syst. Biol.}, volume = {6}, number = {{S-3}}, pages = {S6}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-S3-S6}, doi = {10.1186/1752-0509-6-S3-S6}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/FuJZX12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/FuTDWCLZGC12, author = {Jihong Fu and Wentao Tang and Peng Du and Guanghui Wang and Wei Chen and Jingming Li and Yunxiang Zhu and Jun Gao and Long Cui}, title = {Identifying MicroRNA-mRNA regulatory network in colorectal cancer by a combination of expression profile and bioinformatics analysis}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {68}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-68}, doi = {10.1186/1752-0509-6-68}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/FuTDWCLZGC12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/FujitaSKSPM12, author = {Andr{\'{e}} Fujita and Patricia Severino and Kaname Kojima and Jo{\~{a}}o Ricardo Sato and Alexandre Galv{\~{a}}o Patriota and Satoru Miyano}, title = {Functional clustering of time series gene expression data by Granger causality}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {137}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-137}, doi = {10.1186/1752-0509-6-137}, timestamp = {Mon, 03 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/FujitaSKSPM12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GaoCLWCZD12, author = {Xianfu Gao and Wanjia Chen and Rongxia Li and Minfeng Wang and Chunlei Chen and Rong Zeng and Yueyi Deng}, title = {Systematic variations associated with renal disease uncovered by parallel metabolomics of urine and serum}, journal = {{BMC} Syst. Biol.}, volume = {6}, number = {{S-1}}, pages = {S14}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-S1-S14}, doi = {10.1186/1752-0509-6-S1-S14}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GaoCLWCZD12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GidvaniSLDMDI12, author = {Rohan D. Gidvani and Peter Sudmant and Grace Li and Lance F. DaSilva and Brendan J. McConkey and Bernard P. Duncker and Brian P. Ingalls}, title = {A quantitative model of the initiation of {DNA} replication in Saccharomyces cerevisiae predicts the effects of system perturbations}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {78}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-78}, doi = {10.1186/1752-0509-6-78}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GidvaniSLDMDI12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GonnetDWS12, author = {Pedro Gonnet and Sotiris Dimopoulos and Lukas Widmer and J{\"{o}}rg Stelling}, title = {A specialized {ODE} integrator for the efficient computation of parameter sensitivities}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {46}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-46}, doi = {10.1186/1752-0509-6-46}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GonnetDWS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GrieneisenSHM12, author = {Ver{\^{o}}nica A. Grieneisen and Ben Scheres and Paulien Hogeweg and Athanasius F. M. Mar{\'{e}}e}, title = {Morphogengineering roots: comparing mechanisms of morphogen gradient formation}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {37}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-37}, doi = {10.1186/1752-0509-6-37}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GrieneisenSHM12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GuLCZW12, author = {Zuguang Gu and Jialin Liu and Kunming Cao and Junfeng Zhang and Jin Wang}, title = {Centrality-based pathway enrichment: a systematic approach for finding significant pathways dominated by key genes}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {56}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-56}, doi = {10.1186/1752-0509-6-56}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GuLCZW12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GuZW12, author = {Zuguang Gu and Chenyu Zhang and Jin Wang}, title = {Gene regulation is governed by a core network in hepatocellular carcinoma}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {32}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-32}, doi = {10.1186/1752-0509-6-32}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GuZW12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HaleLC12, author = {Paul J. Hale and Alfredo M. L{\'{o}}pez{-}Yunez and Jake Y. Chen}, title = {Genome-wide meta-analysis of genetic susceptible genes for Type 2 Diabetes}, journal = {{BMC} Syst. Biol.}, volume = {6}, number = {{S-3}}, pages = {S16}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-S3-S16}, doi = {10.1186/1752-0509-6-S3-S16}, timestamp = {Wed, 19 May 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HaleLC12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HanCTX12, author = {Bing Han and Xue{-}wen Chen and Zohreh Talebizadeh and Hua Xu}, title = {Genetic studies of complex human diseases: Characterizing SNP-disease associations using Bayesian networks}, journal = {{BMC} Syst. Biol.}, volume = {6}, number = {{S-3}}, pages = {S14}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-S3-S14}, doi = {10.1186/1752-0509-6-S3-S14}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HanCTX12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HaoRL12, author = {Dapeng Hao and Cong Ren and Chuanxing Li}, title = {Revisiting the variation of clustering coefficient of biological networks suggests new modular structure}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {34}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-34}, doi = {10.1186/1752-0509-6-34}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HaoRL12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HaubrockLW12, author = {Martin Haubrock and Jie Li and Edgar Wingender}, title = {Using potential master regulator sites and paralogous expansion to construct tissue-specific transcriptional networks}, journal = {{BMC} Syst. Biol.}, volume = {6}, number = {{S-2}}, pages = {S15}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-S2-S15}, doi = {10.1186/1752-0509-6-S2-S15}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HaubrockLW12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HauryMVV12, author = {Anne{-}Claire Haury and Fantine Mordelet and Paola Vera{-}Licona and Jean{-}Philippe Vert}, title = {{TIGRESS:} Trustful Inference of Gene REgulation using Stability Selection}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {145}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-145}, doi = {10.1186/1752-0509-6-145}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HauryMVV12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HeavnerSBMW12, author = {Benjamin D. Heavner and Kieran Smallbone and Brandon Barker and Pedro Mendes and Larry P. Walker}, title = {Yeast 5 - an expanded reconstruction of the Saccharomyces cerevisiae metabolic network}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {55}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-55}, doi = {10.1186/1752-0509-6-55}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HeavnerSBMW12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HelikarKMBRMWSLR12, author = {Tom{\'{a}}s Helikar and Bryan M. Kowal and Sean McClenathan and Mitchell Bruckner and Thaine W. Rowley and Alex Madrahimov and Benjamin Wicks and Manish Shrestha and Kahani Limbu and Jim A. Rogers}, title = {The Cell Collective: Toward an open and collaborative approach to systems biology}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {96}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-96}, doi = {10.1186/1752-0509-6-96}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HelikarKMBRMWSLR12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HepburnCWS12, author = {Iain Hepburn and Weiliang Chen and Stefan Wils and Erik De Schutter}, title = {{STEPS:} efficient simulation of stochastic reaction-diffusion models in realistic morphologies}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {36}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-36}, doi = {10.1186/1752-0509-6-36}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HepburnCWS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HoekM12, author = {Milan van Hoek and Roeland Merks}, title = {Redox balance is key to explaining full vs. partial switching to low-yield metabolism}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {22}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-22}, doi = {10.1186/1752-0509-6-22}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HoekM12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HongKKKSCS12, author = {Ji{-}Young Hong and Geun{-}Hong Kim and Jun{-}Woo Kim and Soon{-}Sung Kwon and Eisuke F. Sato and Kwang{-}Hyun Cho and Eun Bo Shim}, title = {Computational modeling of apoptotic signaling pathways induced by cisplatin}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {122}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-122}, doi = {10.1186/1752-0509-6-122}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HongKKKSCS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HongLKKCS12, author = {Changki Hong and Minho Lee and Dongsup Kim and Dong San Kim and Kwang{-}Hyun Cho and Insik Shin}, title = {A checkpoints capturing timing-robust Boolean model of the budding yeast cell cycle regulatory network}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {129}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-129}, doi = {10.1186/1752-0509-6-129}, timestamp = {Thu, 05 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HongLKKCS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HongX0T12, author = {Tian Hong and Jianhua Xing and Liwu Li and John J. Tyson}, title = {A simple theoretical framework for understanding heterogeneous differentiation of CD4\({}^{\mbox{+}}\) {T} cells}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {66}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-66}, doi = {10.1186/1752-0509-6-66}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HongX0T12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HuangCCCC12, author = {Yu{-}Feng Huang and Sheng{-}Chung Chen and Yih{-}Shien Chiang and Tzu{-}Han Chen and Kuo{-}Ping Chiu}, title = {Palindromic sequence impedes sequencing-by-ligation mechanism}, journal = {{BMC} Syst. Biol.}, volume = {6}, number = {{S-2}}, pages = {S10}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-S2-S10}, doi = {10.1186/1752-0509-6-S2-S10}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HuangCCCC12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HuangZXSZ12, author = {Yufei Huang and Zhongming Zhao and Hua Xu and Yu Shyr and Bing Zhang}, title = {Advances in systems biology: computational algorithms and applications}, journal = {{BMC} Syst. Biol.}, volume = {6}, number = {{S-3}}, pages = {S1}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-S3-S1}, doi = {10.1186/1752-0509-6-S3-S1}, timestamp = {Mon, 03 Jun 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HuangZXSZ12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/IngkasuwanNPTBMCTC12, author = {Papapit Ingkasuwan and Supatcharee Netrphan and Sukon Prasitwattanaseree and Morakot Tanticharoen and Sakarindr Bhumiratana and Asawin Meechai and Jeerayut Chaijaruwanich and Hideki Takahashi and Supapon Cheevadhanarak}, title = {Inferring transcriptional gene regulation network of starch metabolism in Arabidopsis thaliana leaves using graphical Gaussian model}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {100}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-100}, doi = {10.1186/1752-0509-6-100}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/IngkasuwanNPTBMCTC12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/JayapandianZEZS12, author = {Catherine P. Jayapandian and Meng Zhao and Rob M. Ewing and Guo{-}Qiang Zhang and Satya Sanket Sahoo}, title = {A semantic proteomics dashboard (SemPoD) for data management in translational research}, journal = {{BMC} Syst. Biol.}, volume = {6}, number = {{S-3}}, pages = {S20}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-S3-S20}, doi = {10.1186/1752-0509-6-S3-S20}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/JayapandianZEZS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/JiaLZ12, author = {Peilin Jia and Yang Liu and Zhongming Zhao}, title = {Integrative pathway analysis of genome-wide association studies and gene expression data in prostate cancer}, journal = {{BMC} Syst. Biol.}, volume = {6}, number = {{S-3}}, pages = {S13}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-S3-S13}, doi = {10.1186/1752-0509-6-S3-S13}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/JiaLZ12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/JiaSG12, author = {Gengjie Jia and Gregory Stephanopoulos and Rudiyanto Gunawan}, title = {Incremental parameter estimation of kinetic metabolic network models}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {142}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-142}, doi = {10.1186/1752-0509-6-142}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/JiaSG12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/JiaoA12, author = {Shuyun Jiao and Ping Ao}, title = {Absorbing phenomena and escaping time for Muller's ratchet in adaptive landscape}, journal = {{BMC} Syst. Biol.}, volume = {6}, number = {{S-1}}, pages = {S10}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-S1-S10}, doi = {10.1186/1752-0509-6-S1-S10}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/JiaoA12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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